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1.
Protein Expr Purif ; 225: 106584, 2025 Jan.
Article in English | MEDLINE | ID: mdl-39178976

ABSTRACT

Lipases comprise the third most commercialized group of enzymes worldwide and those of microbial origin are sought for their multiple advantages. Agro-industrial waste can be an alternative culture medium for producing lipases, reducing production costs and the improper disposal of waste frying oil (WFO). This study aimed to produce yeast lipases through submerged fermentation (SF) using domestic edible oil waste as inducer and alternative culture medium. The optimal culture conditions, most effective inducer, and purification method for a new lipase from Moesziomyces aphidis BRT57 were identified. Yeast was cultured in medium containing green coconut pulp and WFO waste for 72 h. The maximum production of lipases in SF occurred in a culture medium containing WFO and yeast extract at 48 and 72 h of incubation, with enzyme activities of 8.88 and 11.39 U mL-1, respectively. The lipase was isolated through ultrafiltration followed by size exclusion chromatography, achieving a 50.46 % recovery rate. To the best of our knowledge, this is the first study to report the production and purification of lipases from M. aphidis, demonstrating the value of frying oil as inducer and alternative medium for SF, contributing to the production of fatty acids for biodiesel from food waste.


Subject(s)
Cocos , Lipase , Lipase/isolation & purification , Lipase/chemistry , Lipase/biosynthesis , Lipase/metabolism , Cocos/chemistry , Plant Oils/chemistry , Fermentation , Fungal Proteins/isolation & purification , Fungal Proteins/chemistry , Fungal Proteins/biosynthesis , Fungal Proteins/genetics
2.
J Environ Sci (China) ; 149: 242-253, 2025 Mar.
Article in English | MEDLINE | ID: mdl-39181639

ABSTRACT

Poly(butylene succinate-co-furandicarboxylate) (PBSF) and poly(butylene adipate-co-furandicarboxylate) (PBAF) are novel furandicarboxylic acid-based biodegradable copolyesters with great potential to replace fossil-derived terephthalic acid-based copolyesters such as poly(butylene succinate-co-terephthalate) (PBST) and poly(butylene adipate-co-terephthalate) (PBAT). In this study, quantum chemistry techniques after molecular dynamics simulations are employed to investigate the degradation mechanism of PBSF and PBAF catalyzed by Candida antarctica lipase B (CALB). Computational analysis indicates that the catalytic reaction follows a four-step mechanism resembling the ping-pong bibi mechanism, with the initial two steps being acylation reactions and the subsequent two being hydrolysis reactions. Notably, the first step of the hydrolysis is identified as the rate-determining step. Moreover, by introducing single-point mutations to expand the substrate entrance tunnel, the catalytic distance of the first acylation step decreases. Additionally, energy barrier of the rate-determining step is decreased in the PBSF system by site-directed mutations on key residues increasing hydrophobicity of the enzyme's active site. This study unprecedently show the substrate binding pocket and hydrophobicity of the enzyme's active site have the potential to be engineered to enhance the degradation of copolyesters catalyzed by CALB.


Subject(s)
Fungal Proteins , Lipase , Polyesters , Lipase/metabolism , Lipase/chemistry , Fungal Proteins/metabolism , Fungal Proteins/chemistry , Polyesters/chemistry , Polyesters/metabolism , Biodegradation, Environmental , Molecular Dynamics Simulation , Hydrolysis , Models, Chemical
3.
Bioresour Technol ; 412: 131394, 2024 Nov.
Article in English | MEDLINE | ID: mdl-39218365

ABSTRACT

Biodiesel serves as a crucial biofuel alternative to petroleum-based diesel fuels, achieved through enzymatic transesterification of oil substrates. This study aims to investigate stabilized lipase (LP) within calcium carbonate (CaCO3) microparticles as a catalyst for solvent-free transesterification in biodiesel synthesis. The specific hydrolysis activity of the in-situ immobilized LP was 66% of that of free LP. However, the specific transesterification activity of immobilized LP in the solvent-free phase for biodiesel production was 2.29 times higher than that of free LP. These results suggest that the interfacial activation of LP molecules is facilitated by the inorganic CaCO3 environment. The immobilized LP demonstrated higher biodiesel production levels with superior stability compared to free LP, particularly regarding methanol molar ratio and temperature. To the best of our knowledge, there are no previous reports on the in-situ immobilization of LP in a CaCO3 carrier without any crosslinker as an interfacial-activated biocatalyst for biodiesel production.


Subject(s)
Biofuels , Calcium Carbonate , Enzymes, Immobilized , Lipase , Solvents , Calcium Carbonate/chemistry , Lipase/metabolism , Lipase/chemistry , Esterification , Enzymes, Immobilized/metabolism , Enzymes, Immobilized/chemistry , Solvents/chemistry , Temperature , Enzyme Stability , Methanol/chemistry , Hydrolysis , Enzyme Activation
4.
Molecules ; 29(17)2024 Aug 28.
Article in English | MEDLINE | ID: mdl-39274915

ABSTRACT

Phenylpropanoid sucrose esters are a large and important group of natural substances with significant therapeutic potential. This work describes a pilot study of the enzymatic hydroxycinnamoylation of sucrose and its derivatives which was carried out with the aim of obtaining precursors of natural phenylpropanoid sucrose esters, e.g., vanicoside B. In addition to sucrose, some chemically prepared sucrose acetonides and substituted 3'-O-cinnamates were subjected to enzymatic transesterification with vinyl esters of coumaric, ferulic and 3,4,5-trimethoxycinnamic acid. Commercial enzyme preparations of Lipozyme TL IM lipase and Pentopan 500 BG exhibiting feruloyl esterase activity were tested as biocatalysts in these reactions. The substrate specificity of the used biocatalysts for the donor and acceptor as well as the regioselectivity of the reactions were evaluated and discussed. Surprisingly, Lipozyme TL IM catalyzed the cinnamoylation of sucrose derivatives more to the 1'-OH and 4'-OH positions than to the 6'-OH when the 3'-OH was free and the 6-OH was blocked by isopropylidene. In this case, Pentopan reacted comparably to 1'-OH and 6'-OH positions. If sucrose 3'-O-coumarate was used as an acceptor, in the case of feruloylation with Lipozyme in CH3CN, 6-O-ferulate was the main product (63%). Pentopan feruloylated sucrose 3'-O-coumarate comparably well at the 6-OH and 6'-OH positions (77%). When a proton-donor solvent was used, migration of the 3'-O-cinnamoyl group from fructose to the 2-OH position of glucose was observed. The enzyme hydroxycinnamoylations studied can shorten the targeted syntheses of various phenylpropanoid sucrose esters.


Subject(s)
Coumaric Acids , Sucrose , Sucrose/chemistry , Sucrose/metabolism , Coumaric Acids/chemistry , Coumaric Acids/metabolism , Lipase/metabolism , Lipase/chemistry , Cinnamates/chemistry , Cinnamates/metabolism , Substrate Specificity , Esterification , Carboxylic Ester Hydrolases/metabolism , Carboxylic Ester Hydrolases/chemistry , Esters/chemistry , Esters/metabolism , Biocatalysis
5.
Molecules ; 29(17)2024 Aug 31.
Article in English | MEDLINE | ID: mdl-39274989

ABSTRACT

In the glycerolysis process for diacylglycerol (DAG) preparation, free lipases suffer from poor stability and the inability to be reused. To address this, a cost-effective immobilized lipase preparation was developed by cross-linking macroporous resin with poly (ethylene glycol) diglycidyl ether (PEGDGE) followed by lipase adsorption. The selected immobilization conditions were identified as pH 7.0, 35 °C, cross-linking agent concentration 2.0%, cross-linking time 4 h, lipase amount 5 mg/g of support, and adsorption time 4 h. Enzymatic properties of the immobilized lipase were analyzed, revealing enhanced pH stability, thermal stability, storage stability, and operational stability post-immobilization. The conditions for immobilized enzyme-catalyzed glycerolysis to produce DAG were selected, demonstrating the broad applicability of the immobilized lipase. The immobilized lipase catalyzed glycerolysis reactions using various oils as substrates, with DAG content in the products ranging between 35 and 45%, demonstrating broad applicability. Additionally, the changes during the repeated use of the immobilized lipase were characterized, showing that mechanical damage, lipase leakage, and alterations in the secondary structure of the lipase protein contributed to the decline in catalytic activity over time. These findings provide valuable insights for the industrial application of lipase.


Subject(s)
Diglycerides , Enzyme Stability , Enzymes, Immobilized , Lipase , Enzymes, Immobilized/chemistry , Enzymes, Immobilized/metabolism , Lipase/chemistry , Lipase/metabolism , Diglycerides/chemistry , Hydrogen-Ion Concentration , Glycerol/chemistry , Temperature , Eurotiales/enzymology , Biocatalysis , Fungal Proteins/chemistry , Fungal Proteins/metabolism
6.
Bioengineered ; 15(1): 2396647, 2024 Dec.
Article in English | MEDLINE | ID: mdl-39235136

ABSTRACT

Oleuropein (OP) is an appreciated compound present not only in fruits but also in leaves of olive trees, which can be transformed into hydroxytyrosol (HT), a substance with high antioxidant activity. In this work, the transformation of an agricultural residue containing OP (olive leaves or wastewater from mills) to the high added value compound HT is accomplished through different enzymatic strategies. Different enzymes were used, immobilized on various supports by diverse binding forces: beta-glucosidase encapsulated in siliceous material, esterases and lipases immobilized on hydrophobic supports (octyl-functionalized amorphous silica and periodic mesoporous organosilica), and esterase immobilized on amine-functionalized ordered mesoporous silica. All these biocatalysts were tested for oleuropein hydrolysis through two different reaction approaches: a) split of glucosidic bond catalyzed by beta-glucosidase (ß-glu), followed by hydrolysis of the aglycon and further ester hydrolysis. 5 mg·mL-1 of ß-glu fully hydrolyzed 5 mM OP at pH 7 and 50°C in 7 days, and further enzymatic hydrolysis of the aglycon yielded near to 0.5 mM HT in the best conditions tested. b) via direct hydrolysis of the ester bond to produce hydroxytyrosol in a one-step reaction using esterases or lipases. The latter reaction pathway catalyzed by lipase from Penicillium camemberti immobilized on octyl-silica (4 mg·mL-1) at 35°C and pH 6 directly produced 6.8 mM HT (1 mg·mL-1), transforming in 12 days near to 30% of the initial 25 mM OP from a commercial olive leaves extract.


Subject(s)
Enzymes, Immobilized , Iridoid Glucosides , Olea , Phenylethyl Alcohol , beta-Glucosidase , Phenylethyl Alcohol/chemistry , Phenylethyl Alcohol/metabolism , Phenylethyl Alcohol/analogs & derivatives , Iridoid Glucosides/chemistry , Olea/chemistry , Enzymes, Immobilized/metabolism , Enzymes, Immobilized/chemistry , beta-Glucosidase/metabolism , beta-Glucosidase/chemistry , Lipase/metabolism , Lipase/chemistry , Hydrolysis , Agriculture , Plant Leaves/chemistry , Iridoids/chemistry , Iridoids/metabolism
7.
J Phys Chem B ; 128(34): 8162-8169, 2024 Aug 29.
Article in English | MEDLINE | ID: mdl-39158521

ABSTRACT

Conventional bulk protein structure determination methods are not suitable for understanding the distinct and diverse interactions of proteins with interfaces. Notably, interfacial activation is a feature common to many lipases involving movement of a helical "lid" region upon contact with a hydrophobic surface to expose the catalytic site. Here we use the surface specificity of vibrational sum frequency generation spectroscopy (VSFG) spectroscopy to directly probe the conformation of Thermomyces lanuginosus lipase (TLL) at hydrophobic interfaces. The TLL-catalyzed reaction at the air/water interface is monitored by VSFG spectroscopy, showing loss of ester carbonyl modes and appearance of carboxylate stretching modes of the fatty acid products. Furthermore, comparison of experimental and calculated VSFG spectra of the amide I band of TLL allows us to discern the subtle structural changes involved with lid-opening at a hydrophobic surface. Finally, we report a likely orientation of this lid-open state, which interacts with the surface through a loop region away from the lid and active site. This experimental framework for probing protein structure and function at interfaces addresses a significant problem in protein science that is not only impeding the design of better enzymes for biotechnology applications but also drug discovery targeting membrane associated proteins.


Subject(s)
Hydrophobic and Hydrophilic Interactions , Lipase , Lipase/chemistry , Lipase/metabolism , Protein Conformation , Surface Properties , Eurotiales/enzymology , Fungal Proteins/chemistry , Fungal Proteins/metabolism , Spectrum Analysis/methods
8.
ACS Appl Mater Interfaces ; 16(36): 48126-48138, 2024 Sep 11.
Article in English | MEDLINE | ID: mdl-39196803

ABSTRACT

How to maintain high catalytic activity and stability in the process of biocatalysis is crucial, inspiring strategies to construct an appropriate catalytic microenvironment. Considering the lipase's inherent chirality and the necessity for a delicate hydrophilic-hydrophobic equilibrium, we crafted a chiral, nonaqueous catalytic microenvironment via the in situ coassembly of Boc-FLFL-NHNH2 (Bfl) and lipase. Benefiting from the chirality and distinct Bfl-lipase interactions, the lipase@Bfl supramolecular hybrid amplifies biological functionalities and can serve as a versatile and highly efficient catalyst. Kinetic investigations and molecular docking simulations uncover the strong lipase-substrate affinity and lipase-Bfl interactions, explaining the enhanced biological effects, catalytic activity, and stability. Our study establishes a suitable microenvironment to address the chirality and hydrophobicity during catalysis and highlights the potential of artificial chiral scaffolds and catalytic medium for enhancing lipase activity.


Subject(s)
Biocatalysis , Lipase , Molecular Docking Simulation , Lipase/chemistry , Lipase/metabolism , Hydrophobic and Hydrophilic Interactions , Stereoisomerism , Kinetics , Enzymes, Immobilized/chemistry , Enzymes, Immobilized/metabolism
9.
Enzyme Microb Technol ; 180: 110497, 2024 Oct.
Article in English | MEDLINE | ID: mdl-39154569

ABSTRACT

Substrate specificity in non-aqueous esterification catalyzed by commercial lipases activated by hydration-aggregation pretreatment was investigated. Four microbial lipases from Rhizopus japonicus, Burkholderia cepacia, Rhizomucor miehei, and Candida antarctica (fraction B) were used to study the effect of the carbon chain length of saturated fatty acid substrates on the esterification activity with methanol in n-hexane. Hydration-aggregation pretreatment had an activation effect on all lipases used, and different chain length dependencies of esterification activity for lipases from different origins were demonstrated. The effects of various acidic substrates with different degrees of unsaturation, aromatic rings, and alcohol substrates with different carbon chain lengths on esterification activity were examined using R. japonicus lipase, which demonstrated the most remarkable activity enhancement after hydration-aggregation pretreatment. Furthermore, in the esterification of myristic acid with methanol catalyzed by the hydrated-aggregated R. japonicus lipase, maximum reaction rate (5.43 × 10-5 mmol/(mg-biocat min)) and Michaelis constants for each substrate (48.5 mM for myristic acid, 24.7 mM for methanol) were determined by kinetic analysis based on the two-substrate Michaelis-Menten model.


Subject(s)
Burkholderia cepacia , Fungal Proteins , Lipase , Rhizomucor , Rhizopus , Substrate Specificity , Lipase/metabolism , Lipase/chemistry , Esterification , Rhizomucor/enzymology , Burkholderia cepacia/enzymology , Rhizopus/enzymology , Kinetics , Fungal Proteins/metabolism , Fungal Proteins/chemistry , Methanol/metabolism , Myristic Acid/metabolism , Water/chemistry , Water/metabolism , Bacterial Proteins/metabolism , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Fatty Acids/metabolism , Fatty Acids/chemistry , Hexanes/metabolism , Hexanes/chemistry
10.
Bioprocess Biosyst Eng ; 47(10): 1735-1749, 2024 Oct.
Article in English | MEDLINE | ID: mdl-39102121

ABSTRACT

In light of the growing demand for novel biocatalysts and enzyme production methods, this study aimed to evaluate the potential of Aspergillus tubingensis for producing lipase under submerged culture investigating the influence of culture time and inducer treatment. Moreover, this study also investigated conditions for the immobilization of A. tubingensis lipase by physical adsorption on styrene-divinylbenzene beads (Diaion HP-20), for these conditions to be applied to an alternative immobilization system with a packed-bed reactor. Furthermore, A. tubingensis lipase and its immobilized derivative were characterized in terms of their optimal ranges of pH and temperature. A. tubingensis was shown to be a good producer of lipase, obviating the need for inducer addition. The enzyme extract had a hydrolytic activity of 23 U mL-1 and achieved better performance in the pH range of 7.5 to 9.0 and in the temperature range of 20 to 50 °C. The proposed immobilization system was effective, yielding an immobilized derivative with enhanced hydrolytic activity (35 U g-1), optimum activity over a broader pH range (5.6 to 8.4), and increased tolerance to high temperatures (40 to 60 ℃). This research represents a first step toward lipase production from A. tubingensis under a submerged culture and the development of an alternative immobilization system with a packed-bed reactor. The proposed system holds promise for saving time and resources in future industrial applications.


Subject(s)
Bioreactors , Enzymes, Immobilized , Lipase , Lipase/chemistry , Lipase/metabolism , Enzymes, Immobilized/chemistry , Enzymes, Immobilized/metabolism , Adsorption , Hydrogen-Ion Concentration , Aspergillus/enzymology , Fungal Proteins/chemistry , Temperature
11.
Food Res Int ; 192: 114683, 2024 Sep.
Article in English | MEDLINE | ID: mdl-39147537

ABSTRACT

This work evaluated structured lipids (SLs) through chemical and enzymatic interesterification (CSLs and ESLs). Blends of soybean oil and peanut oil 1:1 wt% were used, with gradual addition of fully hydrogenated crambe to obtain a final behenic acid concentration of 6, 12, 18, and 24 %. Chemical catalysis used sodium methoxide (0.4 wt%) at 100 °C for 30 min, while enzymatic catalysis used Lipozyme TL IM (5 wt%) at 60 °C for 6 h. Major fatty acids identified were C16:0, C18:0, and C22:0. It was observed that with gradual increase of hard fat, the CSLs showed high concentrations of reaction intermediates, indicating further a steric hindrance, unlike ESLs. Increased hard fat also altered crystallization profile and triacylglycerols composition and ESLs showed lower solid fat, unlike CSLs. Both methods effectively produced SLs as an alternative to trans and palm fats, view to potential future applications in food products.


Subject(s)
Palm Oil , Soybean Oil , Palm Oil/chemistry , Soybean Oil/chemistry , Esterification , Peanut Oil/chemistry , Trans Fatty Acids/chemistry , Trans Fatty Acids/analysis , Fatty Acids/chemistry , Lipids/chemistry , Triglycerides/chemistry , Food Handling/methods , Lipase/chemistry , Lipase/metabolism , Hydrogenation
12.
Biomolecules ; 14(8)2024 Jul 24.
Article in English | MEDLINE | ID: mdl-39199285

ABSTRACT

This study aimed to explore the capacity of immobilized lipases on the acetylation of six aglycon flavonoids, namely myricetin, quercetin, luteolin, naringenin, fisetin and morin. For this purpose, lipase B from Candida antarctica (CaLB) and lipase from Thermomyces lanuginosus (TLL) were immobilized onto the surface of ZnOFe nanoparticles derived from an aqueous olive leaf extract. Various factors affecting the conversion of substrates and the formation of monoesterified and diesterified products, such as the amount of biocatalyst and the molar ratio of the substrates and reaction solvents were investigated. Both CaLB and TLL-ZnOFe achieved 100% conversion yield of naringenin to naringenin acetate after 72 h of reaction time, while TLL-ZnOFe achieved higher conversion yields of quercetin, morin and fisetin (73, 85 and 72% respectively). Notably, CaLB-ZnOFe displayed significantly lower conversion yields for morin compared with TLL-ZnOFe. Molecular docking analysis was used to elucidate this discrepancy, and it was revealed that the position of the hydroxyl groups of the B ring on morin introduced hindrances on the active site of CaLB. Finally, selected flavonoid esters showed significantly higher antimicrobial activity compared with the original compound. This work indicated that these lipase-based nanobiocatalysts can be successfully applied to produce lipophilic derivatives of aglycon flavonoids with improved antimicrobial activity.


Subject(s)
Enzymes, Immobilized , Flavonoids , Fungal Proteins , Lipase , Molecular Docking Simulation , Flavonoids/chemistry , Flavonoids/metabolism , Lipase/metabolism , Lipase/chemistry , Enzymes, Immobilized/metabolism , Enzymes, Immobilized/chemistry , Acetylation , Fungal Proteins/chemistry , Fungal Proteins/metabolism , Biocatalysis , Eurotiales/enzymology
13.
Carbohydr Polym ; 343: 122454, 2024 Nov 01.
Article in English | MEDLINE | ID: mdl-39174132

ABSTRACT

Efficient, green and stable catalysis has always been the core concept of enzyme catalysis in industrial processes for manufacturing. Therefore, we construct a new strategy with photothermal interfacial molecular transfer for green and efficient biodiesel catalysis. We encapsulate Candida albicans lipase B (CalB) in a γ-cyclodextrin metal-organic framework (γ-CD-MOF) loading with Ti3C2TX by in situ growth and electrostatic assembly. The γ-CD-MOF not only protects the fragile enzyme, but also enhances the catalytic performance through the synergistic effects of porous adsorption (MOF pore structure) and interfacial enrichment (cyclodextrins host-guest assembly structure) for accelerating substrate transfer (642.6 %). The CalB@γ-CD-MOF/MXene-i activity can be regulated up to 274.6 % by exposure to near-infrared (NIR). Importantly, CalB@γ-CD-MOF/MXene-i achieves 93.3 % biodiesel conversion under NIR and maintained 86.9 % activity after 6 cycles. Meanwhile, the MXene after the CalB@γ-CD-MOF/MXene catalytic cycle can be almost completely recovered. We verify the mechanism of high catalytic activity of γ-CD-MOF and rationalize the mechanism of CD molecular channel by DFT. Therefore, this highly selective enzyme catalytic platform offers new possibilities for green and efficient preparation of bioenergy.


Subject(s)
Biofuels , Fungal Proteins , Lipase , Metal-Organic Frameworks , Metal-Organic Frameworks/chemistry , Lipase/chemistry , Lipase/metabolism , Fungal Proteins/chemistry , Fungal Proteins/metabolism , Enzymes, Immobilized/chemistry , Enzymes, Immobilized/metabolism , Candida albicans/enzymology , Biocatalysis , gamma-Cyclodextrins/chemistry , Catalysis , Porosity , Titanium/chemistry
14.
J Biotechnol ; 393: 117-127, 2024 Sep 20.
Article in English | MEDLINE | ID: mdl-39098744

ABSTRACT

This study focuses on the development a green synthesis of epoxy fatty acids (EFAs) which are commonly used as the plasticizer in polymer industries. The intracellular lipases of Candida catenulata cells as a whole-cell biocatalyst (WCB) were examined in the bio-epoxidation of free fatty acids (FFAs) with hydrogen peroxide. The FFAs in soybean soap stock, an industrial by-product of vegetable oil factories, was used as the feedstock of the process. To remove phosphates from soap stock a degumming process was tested before the bio-epoxidation reaction and results revealed that the EFAs yield was improved using the degummed fatty acids (DFAs). The attachments of magnetic Fe3O4 nanoparticles to the surface of WCBs facilitated the recovery of the biocatalyst, and were improved stabilities. The activation energy for the magnetic whole-cell biocatalysts (MWCB) was 48.54 kJ mol-1, which was lower than the WCB system (51.28 kJ mol-1). The EFA yield was about 47.1 % and 33.8 % after 3 h for the MWCBs and 2 h for the WCBs, respectively. The MWCBs displayed acceptable reusability in the repetitious bio-epoxidation reaction with maintaining 59 % of the original activity after 5 cycles whereas the performance of the WCBs was 5.9 % at the same conditions. The effects of influential factors such as reaction time, molar ratio of H2O2 to CC, and batch and semi-batch operations were investigated for both biocatalyst systems. The quality of EFAs was characterized by FTIR and GC-MS analyses.


Subject(s)
Biocatalysis , Candida , Epoxy Compounds , Fatty Acids , Lipase , Lipase/metabolism , Lipase/chemistry , Candida/enzymology , Fatty Acids/metabolism , Epoxy Compounds/metabolism , Epoxy Compounds/chemistry , Hydrogen Peroxide/metabolism , Green Chemistry Technology/methods
15.
Food Chem ; 460(Pt 2): 140708, 2024 Dec 01.
Article in English | MEDLINE | ID: mdl-39096803

ABSTRACT

The detailed characterization of the structural features of peptides targeting cholesterol esterase (CEase) or pancreatic lipase (PPL) will benefit the management of hyperlipidemia and obesity. This study employed the Glide SP (standard precision)-peptide method to predict the binding modes of 202 dipeptides and 203 tripeptides to these targets, correlating residue composition and position with binding energy. Strong preferences for Trp, Phe, and Tyr were observed at all positions of potential inhibitory peptides, whereas negatively charged residues Glu and Asp were disfavored. Notably, Arg and aromatic rings significantly influenced the peptide conformation at the active site. Tripeptide IWR demonstrated the high efficacy, with IC50 values of 0.214 mg/mL for CEase and 0.230 mg/mL for PPL. Five novel IWR scaffold-tetrapeptides exhibited promising inhibitory activity. Non-covalent interactions and energy contributions dominated the formation of stable complexes. Our results provide insights for the development of new sequences or peptide-like molecules with enhanced inhibitory activity.


Subject(s)
Enzyme Inhibitors , Lipase , Peptides , Sterol Esterase , Sterol Esterase/chemistry , Sterol Esterase/antagonists & inhibitors , Sterol Esterase/metabolism , Enzyme Inhibitors/chemistry , Enzyme Inhibitors/pharmacology , Lipase/chemistry , Lipase/antagonists & inhibitors , Peptides/chemistry , Peptides/pharmacology , Humans , Pancreas/enzymology , Pancreas/chemistry , Animals , Molecular Docking Simulation
16.
J Pharm Biomed Anal ; 251: 116430, 2024 Dec 15.
Article in English | MEDLINE | ID: mdl-39197203

ABSTRACT

Enzyme immobilization by metal organic frameworks (MOFs) is an efficient way for screening active constituents in natural products. However, the enzyme's biocatalysis activity is usually decreased due to unfavorable conformational changes during the immobilization process. In this study, sodium cholate was firstly used as the modifier for zeolitic imidazolate framework-8 (ZIF-8) immobilized lipase to increase both the stability and activity. More importantly, with the help of solubilization of sodium cholate, a total of 3 flavonoids and 6 alkaloids candidate compounds were fished out. Their structures were identified and the enzyme inhibitory activities were verified. In addition, the binding information between the candidate compound and the enzyme was displayed by molecular docking. This study provides valuable information for the improvement of immobilized enzyme activity and functional active ingredients in complicated medicinal plant extracts.


Subject(s)
Enzyme Inhibitors , Enzymes, Immobilized , Flavonoids , Hydrophobic and Hydrophilic Interactions , Lipase , Metal-Organic Frameworks , Molecular Docking Simulation , Sodium Cholate , Solubility , Lipase/antagonists & inhibitors , Lipase/chemistry , Lipase/metabolism , Enzymes, Immobilized/chemistry , Enzymes, Immobilized/antagonists & inhibitors , Metal-Organic Frameworks/chemistry , Sodium Cholate/chemistry , Flavonoids/chemistry , Flavonoids/pharmacology , Enzyme Inhibitors/pharmacology , Enzyme Inhibitors/chemistry , Ligands , Alkaloids/chemistry , Alkaloids/pharmacology , Plant Extracts/chemistry , Plant Extracts/pharmacology
17.
J Agric Food Chem ; 72(36): 20140-20152, 2024 Sep 11.
Article in English | MEDLINE | ID: mdl-39198143

ABSTRACT

A new Candida parapsilosis ACCC 20221 (C. parapsilosis ACCC 20221) whole-cell catalyst with a high phenolic glycoside esters synthesis activity and large biomass was obtained after culture with glucose. The possible mechanisms were revealed by using comparative proteomics. It found the expression of proteins involved in post-translational modification, protein turnover, and chaperone, and RNA processing and modification was upregulated, which ensured the metabolic balance and accurate translation, correct folding, and post-translational modification of proteins, thus enhancing the production of lipases in C. parapsilosis ACCC 20221 cultured with glucose. Moreover, the glycolysis pathway, tricarboxylic acid cycle, and fatty acids synthesis were enhanced, while the ß-oxidation of fatty acids was weakened in C. parapsilosis ACCC 20221 cells cultured with glucose, which led to an increase in energy generation and cell membrane synthesis; thus, large biomass was obtained. In addition, CCE40476.1 and CAC86400.1, which were likely to exert arbutin esters synthesis activity in C. parapsilosis ACCC 20221, were screened, and it was found that vinyl propionate could easily enter the catalytic pocket of CCE40476.1 and form hydrogen bonding interactions with Leu191 and Ser266.


Subject(s)
Biomass , Candida parapsilosis , Esters , Fungal Proteins , Glucose , Glycosides , Proteomics , Esters/chemistry , Esters/metabolism , Fungal Proteins/metabolism , Fungal Proteins/chemistry , Fungal Proteins/genetics , Glucose/metabolism , Candida parapsilosis/metabolism , Glycosides/chemistry , Glycosides/metabolism , Phenols/metabolism , Phenols/chemistry , Lipase/metabolism , Lipase/chemistry , Biocatalysis
18.
J Agric Food Chem ; 72(30): 16835-16847, 2024 Jul 31.
Article in English | MEDLINE | ID: mdl-39028993

ABSTRACT

Few reports exist on one-step enzymatic methods for the simultaneous production of biodiesel and eicosapentaenoic acid ethyl ester (EPA-EE), a high-value pharmaceutical compound. This study aimed to efficiently express Rhizomucor miehei lipase (pRML) in Pichia pastoris X-33 via propeptide mutation and high-copy strain screening. The mutated enzyme was then used to simultaneously catalyze the production of both biodiesel and EPA-EE. The P46N mutation in the propeptide (P46N-pRML) significantly boosted its production, with the four-copy strain increasing enzyme yield by 3.7-fold, reaching 3425 U/mL. Meanwhile, its optimal temperature increased to 45-50 °C, pH expanded to 7.0-8.0, specific activity doubled, Km reduced to one-third, and kcat/Km increased 7-fold. Notably, P46N-pRML efficiently converts Nannochloropsis gaditana oil's eicosapentaenoic acid (EPA). Under optimal conditions, it achieves up to 93% biodiesel and 92% EPA-EE yields in 9 h. Our study introduces a novel, efficient one-step green method to produce both biodiesel and EPA-EE using this advanced enzyme.


Subject(s)
Biofuels , Eicosapentaenoic Acid , Fungal Proteins , Lipase , Rhizomucor , Stramenopiles , Rhizomucor/enzymology , Rhizomucor/genetics , Eicosapentaenoic Acid/metabolism , Eicosapentaenoic Acid/chemistry , Eicosapentaenoic Acid/analogs & derivatives , Lipase/metabolism , Lipase/genetics , Lipase/chemistry , Biofuels/analysis , Stramenopiles/genetics , Stramenopiles/enzymology , Stramenopiles/metabolism , Stramenopiles/chemistry , Fungal Proteins/genetics , Fungal Proteins/metabolism , Fungal Proteins/chemistry , Gene Expression , Enzyme Stability , Kinetics , Temperature , Hydrogen-Ion Concentration , Saccharomycetales/genetics , Saccharomycetales/metabolism , Saccharomycetales/enzymology
19.
Int J Mol Sci ; 25(14)2024 Jul 19.
Article in English | MEDLINE | ID: mdl-39063171

ABSTRACT

Lipases are enzymes that hydrolyze long-chain carboxylic esters, and in the presence of organic solvents, they catalyze organic synthesis reactions. However, the use of solvents in these processes often results in enzyme denaturation, leading to a reduction in enzymatic activity. Consequently, there is significant interest in identifying new lipases that are resistant to denaturing conditions, with extremozymes emerging as promising candidates for this purpose. Lip7, a lipase from Geobacillus sp. ID17, a thermophilic microorganism isolated from Deception Island, Antarctica, was recombinantly expressed in E. coli C41 (DE3) in functional soluble form. Its purification was achieved with 96% purity and 23% yield. Enzymatic characterization revealed Lip7 to be a thermo-alkaline enzyme, reaching a maximum rate of 3350 U mg-1 at 50 °C and pH 11.0, using p-nitrophenyl laurate substrate. Notably, its kinetics displayed a sigmoidal behavior, with a higher kinetic efficiency (kcat/Km) for substrates of 12-carbon atom chain. In terms of thermal stability, Lip7 demonstrates stability up to 60 °C at pH 8.0 and up to 50 °C at pH 11.0. Remarkably, it showed high stability in the presence of organic solvents, and under certain conditions even exhibited enzymatic activation, reaching up to 2.5-fold and 1.35-fold after incubation in 50% v/v ethanol and 70% v/v isopropanol, respectively. Lip7 represents one of the first lipases from the bacterial subfamily I.5 and genus Geobacillus with activity and stability at pH 11.0. Its compatibility with organic solvents makes it a compelling candidate for future research in biocatalysis and various biotechnological applications.


Subject(s)
Enzyme Stability , Geobacillus , Lipase , Recombinant Proteins , Solvents , Geobacillus/enzymology , Geobacillus/genetics , Lipase/genetics , Lipase/chemistry , Lipase/metabolism , Lipase/isolation & purification , Solvents/chemistry , Antarctic Regions , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Recombinant Proteins/genetics , Hydrogen-Ion Concentration , Bacterial Proteins/genetics , Bacterial Proteins/chemistry , Bacterial Proteins/metabolism , Kinetics , Substrate Specificity , Temperature , Escherichia coli/genetics , Escherichia coli/metabolism
20.
J Biotechnol ; 392: 118-127, 2024 Sep 10.
Article in English | MEDLINE | ID: mdl-38969178

ABSTRACT

This study aimed at Candida rugosa lipase immobilization on a low-cost and readily available support. Among agro-industrial crops, hemp tea waste was chosen as the carrier because it provides higher immobilization performance than hemp flower and leaf wastes. Support characterization by ATR-FTIR, SEM and elemental analysis and the optimization of the adsorption immobilization process were performed. The lipase adsorption immobilization was obtained by soaking the support with hexane under mild agitation for 2 h and a successively incubating the enzyme for 1 h at room temperature without removing the solvent. The esterification of oleic acid with n-decanol was tested in a solvent-free system by studying some parameters that influence the reaction, such as the substrates molar ratio, the lipase activity/oleic acid ratio, reaction temperature and the presence/absence of molecular sieves. The biocatalyst showed the ability to bring the esterification reaction to equilibrium under 60 min and good reusability (maintaining 60 % of its original activity after three successive esterification reactions) but low conversion (21 %) at the optimized conditions (40 °C, 1:2 substrates molar ratio, 0.56 lipase/oleic acid ratio, without sieves). Comparing the results with those obtained by free lipase form at the same activity (1 U) and experimental conditions, slightly higher conversion (%) appeared for the free lipase. All this highlighted that probably the source of lipase for its carbohydrate-binding pocket and lid structure affected the esterification of oleic acid but certainly, the immobilization didn't induce any lipase conformational change also allowing the reuse of the catalytic material.


Subject(s)
Cannabis , Enzymes, Immobilized , Lipase , Oleic Acid , Lipase/metabolism , Lipase/chemistry , Enzymes, Immobilized/metabolism , Enzymes, Immobilized/chemistry , Esterification , Oleic Acid/chemistry , Oleic Acid/metabolism , Cannabis/enzymology , Cannabis/chemistry , Cannabis/metabolism , Solvents/chemistry , Candida/enzymology , Saccharomycetales
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