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1.
Head Neck Pathol ; 18(1): 92, 2024 Oct 04.
Article in English | MEDLINE | ID: mdl-39365497

ABSTRACT

PURPOSE: The current study aimed to investigate the use of surrogate immunohistochemical (IHC) markers of proliferation and stem cells to distinguish ameloblastoma (AB) from ameloblastic carcinoma (AC). METHODS: The study assessed a total of 29 ACs, 6 ABs that transformed into ACs, and a control cohort of 20 ABs. The demographics and clinicopathologic details of the included cases of AC were recorded. The Ki-67 proliferation index was scored through automated methods with the QuPath open-source software platform. For SOX2, OCT4 and Glypican-3 IHC, each case was scored using a proportion of positivity score combined with an intensity score to produce a total score. RESULTS: All cases of AC showed a relatively high median proliferation index of 41.7%, with statistically significant higher scores compared to ABs. ABs that transformed into ACs had similar median proliferation scores to the control cohort of ABs. Most cases of AC showed some degree of SOX2 expression, with 58.6% showing high expression. OCT4 expression was not seen in any case of AC. GPC-3 expression in ACs was limited, with high expression in 17.2% of ACs. Primary ACs showed higher median proliferation scores and degrees of SOX2 and GPC-3 expression than secondary cases. Regarding SOX2, OCT4 and GPC-3 IHC expression, no statistically significant differences existed between the cohort of ABs and ACs. CONCLUSION: Ki-67 IHC as a proliferation marker, particularly when assessed via automated methods, was helpful in distinguishing AC from AB cases. In contrast to other studies, surrogate IHC markers of embryonic stem cells, SOX2, OCT4 and GPC-3, were unreliable in distinguishing the two entities.


Subject(s)
Ameloblastoma , Biomarkers, Tumor , Cell Proliferation , Immunohistochemistry , Ameloblastoma/pathology , Ameloblastoma/diagnosis , Ameloblastoma/metabolism , Humans , Biomarkers, Tumor/analysis , Biomarkers, Tumor/metabolism , Female , Male , Diagnosis, Differential , Adult , Middle Aged , Embryonic Stem Cells , Jaw Neoplasms/pathology , Jaw Neoplasms/metabolism , Jaw Neoplasms/diagnosis , Adolescent , Young Adult , Octamer Transcription Factor-3/metabolism , Octamer Transcription Factor-3/analysis , Aged , SOXB1 Transcription Factors/analysis , SOXB1 Transcription Factors/metabolism , Child , Glypicans
2.
Biomed Pharmacother ; 179: 117399, 2024 Oct.
Article in English | MEDLINE | ID: mdl-39243433

ABSTRACT

Proper fetal development requires tight regulation of serotonin concentrations within the fetoplacental unit. This homeostasis is partly maintained by the placental transporter OCT3/SLC22A3, which takes up serotonin from the fetal circulation. Metformin, an antidiabetic drug commonly used to treat gestational diabetes mellitus, was shown to inhibit OCT3. We, therefore, hypothesized that its use during pregnancy could disrupt placental serotonin homeostasis. This hypothesis was tested using three experimental model systems: primary trophoblast cells isolated from the human term placenta, fresh villous human term placenta fragments, and rat term placenta perfusions. Inhibition of serotonin transport by metformin at three concentrations (1 µM, 10 µM, and 100 µM) was assessed in all three models. The OCT3 inhibitor decynium-22 (100 µM) and paroxetine (100 µM), a dual inhibitor of SERT and OCT3, were used as controls. In primary trophoblasts, paroxetine exhibited the strongest inhibition of serotonin uptake, followed by decynium-22. Metformin showed a concentration-dependent effect, reducing serotonin uptake by up to 57 % at the highest concentration. Its inhibitory effect was less pronounced in fresh villous fragments but remained statistically significant at all concentrations. In the perfused rat placenta, metformin demonstrated a concentration-dependent effect, reducing placental serotonin uptake by 44 % at the highest concentration tested. Our findings across all experimental models show inhibition of placental OCT3 by metformin, resulting in reduced serotonin uptake by the trophoblast. This sheds light on mechanisms that may underpin metformin-mediated effects on fetal development.


Subject(s)
Metformin , Placenta , Serotonin , Trophoblasts , Metformin/pharmacology , Female , Pregnancy , Animals , Serotonin/metabolism , Placenta/metabolism , Placenta/drug effects , Humans , Trophoblasts/metabolism , Trophoblasts/drug effects , Rats , Biological Transport/drug effects , Octamer Transcription Factor-3/metabolism , Hypoglycemic Agents/pharmacology , Cells, Cultured , Rats, Wistar , Organic Cation Transport Proteins
3.
PLoS One ; 19(9): e0311120, 2024.
Article in English | MEDLINE | ID: mdl-39348365

ABSTRACT

Enhancers have critical functions in the precise, spatiotemporal control of transcription during development. It is thought that enhancer grammar, or the characteristics and arrangements of transcription factor binding sites, underlie the specific functions of developmental enhancers. In this study, we sought to identify grammatical constraints that direct enhancer activity in the naïve state of pluripotency, focusing on the enhancers for the naïve-state specific gene, Klf4. Using a combination of biochemical tests, reporter assays, and endogenous mutations in mouse embryonic stem cells, we have studied the binding sites for the transcription factors OCT4 and SOX2. We have found that the three Klf4 enhancers contain suboptimal OCT4-SOX2 composite binding sites. Substitution with a high-affinity OCT4-SOX2 binding site in Klf4 enhancer E2 rescued enhancer function and Klf4 expression upon loss of the ESRRB and STAT3 binding sites. We also observed that the low-affinity of the OCT4-SOX2 binding site is crucial to drive the naïve-state specific activities of Klf4 enhancer E2. Altogether, our work suggests that the affinity of OCT4-SOX2 binding sites could facilitate enhancer functions in specific states of pluripotency.


Subject(s)
Enhancer Elements, Genetic , Kruppel-Like Factor 4 , Kruppel-Like Transcription Factors , Octamer Transcription Factor-3 , SOXB1 Transcription Factors , Animals , Kruppel-Like Transcription Factors/metabolism , Kruppel-Like Transcription Factors/genetics , SOXB1 Transcription Factors/metabolism , SOXB1 Transcription Factors/genetics , Octamer Transcription Factor-3/metabolism , Octamer Transcription Factor-3/genetics , Mice , Binding Sites , Mouse Embryonic Stem Cells/metabolism , Protein Binding , STAT3 Transcription Factor/metabolism , STAT3 Transcription Factor/genetics
4.
Sci Rep ; 14(1): 22619, 2024 09 30.
Article in English | MEDLINE | ID: mdl-39349745

ABSTRACT

Cancer stem cells (CSC) play an important role in carcinogenesis and are acknowledged to be responsible for chemoresistance in cholangiocarcinoma (CCA). Studying CCA CSC has been challenging, due to lack of consensus CSC markers, and to their plastic nature. Since dual expression of the core pluripotent factors SOX2/OCT4 has been shown to correlate with poor outcome in CCA patients, we selected the SOX2/OCT4 activating short half-life GFP-based live reporter (SORE6-dsCopGFP) to study CSC dynamics at the single-cell level. Transduction of five human CCA cell lines resulted in the expression of 1.8-13.1% GFP-positive (SORE6POS) cells. By live imaging, we found that SORE6POS CCA cells possess self-renewal capacity and that they can be induced to differentiate. Significantly, the SORE6POS cells were highly tumorigenic, both in vitro and in vivo, thus implicating the characteristics of primary CSCs. When we then analyzed for selected CSC-related markers, we found that the majority of both CD133+/CD44+, and CD133+/LGR5+ CCA cells were SORE6POS cells. Exposing transduced cells to standard CCA chemotherapy revealed higher growth rate inhibition at 50% (GR50s) for SORE6POS cells compared to GFP-negative (SORE6NEG) ones indicating that these CSC-like cells were more resistant to the treatment. Moreover, the chemotherapy induced SORE6POS from SORE6NEG cells, while retaining the existing SORE6POS population. Finally, treatment of transduced cells with CDK4/6 inhibitors in vitro for 3 days resulted in a lowered CSC number in the culture. Thus, applying a live reporter system allowed us to elucidate the stem cell diversity and drug-induced plasticity of CCA CSCs. These findings have clear implications for future management of such patients.


Subject(s)
Bile Duct Neoplasms , Cholangiocarcinoma , Neoplastic Stem Cells , Neoplastic Stem Cells/metabolism , Neoplastic Stem Cells/drug effects , Neoplastic Stem Cells/pathology , Humans , Cholangiocarcinoma/pathology , Cholangiocarcinoma/metabolism , Cholangiocarcinoma/drug therapy , Cell Line, Tumor , Bile Duct Neoplasms/pathology , Bile Duct Neoplasms/drug therapy , Bile Duct Neoplasms/metabolism , Genes, Reporter , SOXB1 Transcription Factors/metabolism , SOXB1 Transcription Factors/genetics , Single-Cell Analysis/methods , Animals , Mice , Octamer Transcription Factor-3/metabolism , Octamer Transcription Factor-3/genetics , Antineoplastic Agents/pharmacology , Cell Plasticity/drug effects , Drug Resistance, Neoplasm
5.
Cytokine ; 182: 156725, 2024 Oct.
Article in English | MEDLINE | ID: mdl-39106575

ABSTRACT

During the aging process, elastin is degraded and the level of elastin-derived peptides (EDPs) successively increases. The main peptide released from elastin during its degradation is a peptide with the VGVAPG sequence. To date, several papers have described that EDPs or elastin-like peptides (ELPs) affect human mesenchymal stem cells (hMSCs) derived from different tissues. Unfortunately, despite the described effect of EDPs or ELPs on the hMSC differentiation process, the mechanism of action of these peptides has not been elucidated. Therefore, the aim of the present study was to evaluate the impact of the VGVAPG and VVGPGA peptides on the hMSC stemness marker and elucidation of the mechanism of action of these peptides. Our data show that both studied peptides (VGVAPG and VVGPGA) act with the involvement of ERK1/2 and c-SRC kinases. However, their mechanism of activation is probably different in hMSCs derived from adipose tissue. Both studied peptides increase the KI67 protein level in hMSCs, but this is not accompanied with cell proliferation. Moreover, the changes in the NANOG and c-MYC protein expression and in the SOX2 and POU5F1 mRNA expression suggest that EDPs reduced the hMSC stemness properties and could initiate cell differentiation. The initiation of differentiation was evidenced by changes in the expression of AhR and PPARγ protein as well as specific genes (ACTB, TUBB3) and proteins (ß-actin, RhoA) involved in cytoskeleton remodeling. Our data suggest that the presence of EDPs in tissue can initiate hMSC differentiation into more tissue-specific cells.


Subject(s)
Cell Differentiation , Elastin , Mesenchymal Stem Cells , Humans , Mesenchymal Stem Cells/metabolism , Elastin/metabolism , Adipose Tissue/metabolism , Adipose Tissue/cytology , Ki-67 Antigen/metabolism , SOXB1 Transcription Factors/metabolism , SOXB1 Transcription Factors/genetics , Peptides/metabolism , Gene Expression Regulation/drug effects , Nanog Homeobox Protein/metabolism , Nanog Homeobox Protein/genetics , Cells, Cultured , Oligopeptides/metabolism , Octamer Transcription Factor-3/metabolism , Octamer Transcription Factor-3/genetics , Cell Proliferation , Proto-Oncogene Proteins c-myc/metabolism , Proto-Oncogene Proteins c-myc/genetics , Mitogen-Activated Protein Kinase 3/metabolism , Mitogen-Activated Protein Kinase 1/metabolism
6.
Reprod Domest Anim ; 59(8): e14706, 2024 Aug.
Article in English | MEDLINE | ID: mdl-39157940

ABSTRACT

The present study describes the morphological and immunohistochemical characteristics of a case of diffuse seminoma in a 16-year-old male mixed-breed horse. According to the owner, the animal's left testicle had been gradually increasing in size over a period of 2 months. On palpation, the testicle had a firm consistency, with no sensitivity to digital pressure, was adhered to the scrotum and measuring 16 cm × 8 cm. In the ultrasound examination, it presented a heterogeneous texture and areas of hypoechogenic echogenicity without visualization of the mediastinum. Therefore, the bilateral orchiectomy was performed. After the surgical procedure, it was found that the affected testicle presented a firm mass measuring 9 cm × 7 cm × 3.5 cm. Histologically, a multilobulated, non-encapsulated and invasive tumour mass was found, which replaced the seminiferous tubules, consisting of polygonal cells arranged in a mantle that varied from cohesive to loosely cohesive, supported by a scarce fibrous stroma. In the immunohistochemical examination, the neoplastic cells showed positive immunolabelling for OCT4 and C-KIT. In this report, the physical examination combined with the ultrasonographic examination were fundamental to the therapeutic management of the case, and the final diagnosis was made after histopathological and immunohistochemical tests.


Subject(s)
Horse Diseases , Orchiectomy , Seminoma , Testicular Neoplasms , Male , Animals , Seminoma/veterinary , Seminoma/pathology , Seminoma/surgery , Horses , Testicular Neoplasms/veterinary , Testicular Neoplasms/pathology , Testicular Neoplasms/surgery , Orchiectomy/veterinary , Horse Diseases/pathology , Horse Diseases/surgery , Horse Diseases/diagnostic imaging , Ultrasonography/veterinary , Immunohistochemistry/veterinary , Proto-Oncogene Proteins c-kit/analysis , Proto-Oncogene Proteins c-kit/metabolism , Octamer Transcription Factor-3/analysis , Octamer Transcription Factor-3/metabolism
7.
Mol Cell ; 84(18): 3455-3468.e6, 2024 Sep 19.
Article in English | MEDLINE | ID: mdl-39208807

ABSTRACT

Mammalian gene expression is controlled by transcription factors (TFs) that engage sequence motifs in a chromatinized genome, where nucleosomes can restrict DNA access. Yet, how nucleosomes affect individual TFs remains unclear. Here, we measure the ability of over one hundred TF motifs to recruit TFs in a defined chromosomal locus in mouse embryonic stem cells. This identifies a set sufficient to enable the binding of TFs with diverse tissue specificities, functions, and DNA-binding domains. These chromatin-competent factors are further classified when challenged to engage motifs within a highly phased nucleosome. The pluripotency factors OCT4-SOX2 preferentially engage non-nucleosomal and entry-exit motifs, but not nucleosome-internal sites, a preference that also guides binding genome wide. By contrast, factors such as BANP, REST, or CTCF engage throughout, causing nucleosomal displacement. This supports that TFs vary widely in their sensitivity to nucleosomes and that genome access is TF specific and influenced by nucleosome position in the cell.


Subject(s)
Mouse Embryonic Stem Cells , Nucleosomes , Transcription Factors , Nucleosomes/metabolism , Nucleosomes/genetics , Animals , Mice , Transcription Factors/metabolism , Transcription Factors/genetics , Mouse Embryonic Stem Cells/metabolism , Binding Sites , Protein Binding , Genome/genetics , Octamer Transcription Factor-3/metabolism , Octamer Transcription Factor-3/genetics , Chromatin/metabolism , Chromatin/genetics , SOXB1 Transcription Factors/genetics , SOXB1 Transcription Factors/metabolism , Chromatin Assembly and Disassembly
8.
PLoS One ; 19(7): e0306969, 2024.
Article in English | MEDLINE | ID: mdl-38990953

ABSTRACT

Docetaxel (Doc) plays a crucial role in clinical antineoplastic practice. However, it is continuously documented that tumors frequently develop chemoresistance and relapse, which may be related to polyploid giant cancer cells (PGCCs). The aim of this study was investigate the formation mechanism and biological behavior of PGCCs induced by Doc. Ovarian cancer cells were treated with Doc, and then the effect of Doc on cellular viability was evaluated by MTT assay and microscopic imaging analysis. The biological properties of PGCCs were further evaluated by Hoechst 33342 staining, cell cycle and DNA content assay, DNA damage response (DDR) signaling detection, ß-galactosidase staining, mitochondrial membrane potential detection, and reverse transcription-quantitative polymerase chain reaction. The results indicated that Doc reduced cellular viability; however, many cells were still alive, and were giant and polyploid. Doc increased the proportion of cells stayed in the G2/M phase and reduced the number of cells. In addition, the expression of γ-H2A.X was constantly increased after Doc treatment. PGCCs showed senescence-associated ß-galactosidase activity and an increase in the monomeric form of JC-1. The mRNA level of octamer-binding transcription factor 4 (OCT4) and krüppel-like factor 4 (KLF4) was significantly increased in PGCCs. Taken together, our results suggest that Doc induces G2/M cell cycle arrest, inhibits the proliferation and activates persistent DDR signaling to promote the formation of PGCCs. Importantly, PGCCs exhibit a senescence phenotype and express stem cell markers.


Subject(s)
Cellular Senescence , Docetaxel , Kruppel-Like Factor 4 , Neoplastic Stem Cells , Ovarian Neoplasms , Polyploidy , Humans , Docetaxel/pharmacology , Female , Ovarian Neoplasms/drug therapy , Ovarian Neoplasms/pathology , Ovarian Neoplasms/metabolism , Ovarian Neoplasms/genetics , Cellular Senescence/drug effects , Cell Line, Tumor , Neoplastic Stem Cells/drug effects , Neoplastic Stem Cells/metabolism , Neoplastic Stem Cells/pathology , Octamer Transcription Factor-3/metabolism , Octamer Transcription Factor-3/genetics , Giant Cells/drug effects , Giant Cells/metabolism , Antineoplastic Agents/pharmacology , Phenotype , Cell Survival/drug effects , Membrane Potential, Mitochondrial/drug effects , Kruppel-Like Transcription Factors/metabolism , Kruppel-Like Transcription Factors/genetics , Taxoids/pharmacology , DNA Damage/drug effects , Gene Expression Regulation, Neoplastic/drug effects , Biomarkers, Tumor/metabolism , Biomarkers, Tumor/genetics
9.
Development ; 151(14)2024 Jul 15.
Article in English | MEDLINE | ID: mdl-39069943

ABSTRACT

Naïve epiblast cells in the embryo and pluripotent stem cells in vitro undergo developmental progression to a formative state competent for lineage specification. During this transition, transcription factors and chromatin are rewired to encode new functional features. Here, we examine the role of mitogen-activated protein kinase (ERK1/2) signalling in pluripotent state transition. We show that a primary consequence of ERK activation in mouse embryonic stem cells is elimination of Nanog, which precipitates breakdown of the naïve state gene regulatory network. Variability in pERK dynamics results in heterogeneous loss of Nanog and metachronous state transition. Knockdown of Nanog allows exit without ERK activation. However, transition to formative pluripotency does not proceed and cells collapse to an indeterminate identity. This outcome is due to failure to maintain expression of the central pluripotency factor Oct4. Thus, during formative transition ERK signalling both dismantles the naïve state and preserves pluripotency. These results illustrate how a single signalling pathway can both initiate and secure transition between cell states.


Subject(s)
MAP Kinase Signaling System , Nanog Homeobox Protein , Octamer Transcription Factor-3 , Pluripotent Stem Cells , Animals , Nanog Homeobox Protein/metabolism , Nanog Homeobox Protein/genetics , Mice , Octamer Transcription Factor-3/metabolism , Octamer Transcription Factor-3/genetics , Pluripotent Stem Cells/metabolism , Pluripotent Stem Cells/cytology , Cell Differentiation/genetics , Mouse Embryonic Stem Cells/metabolism , Mouse Embryonic Stem Cells/cytology , Gene Expression Regulation, Developmental , Germ Layers/metabolism , Germ Layers/cytology , Gene Regulatory Networks , Homeodomain Proteins/metabolism , Homeodomain Proteins/genetics
10.
Sci Rep ; 14(1): 15760, 2024 07 09.
Article in English | MEDLINE | ID: mdl-38977828

ABSTRACT

Manufacturing regenerative medicine requires continuous monitoring of pluripotent cell culture and quality assessment while eliminating cell destruction and contaminants. In this study, we employed a novel method to monitor the pluripotency of stem cells through image analysis, avoiding the traditionally used invasive procedures. This approach employs machine learning algorithms to analyze stem cell images to predict the expression of pluripotency markers, such as OCT4 and NANOG, without physically interacting with or harming cells. We cultured induced pluripotent stem cells under various conditions to induce different pluripotent states and imaged the cells using bright-field microscopy. Pluripotency states of induced pluripotent stem cells were assessed using invasive methods, including qPCR, immunostaining, flow cytometry, and RNA sequencing. Unsupervised and semi-supervised learning models were applied to evaluate the results and accurately predict the pluripotency of the cells using only image analysis. Our approach directly links images to invasive assessment results, making the analysis of cell labeling and annotation of cells in images by experts dispensable. This core achievement not only contributes for safer and more reliable stem cell research but also opens new avenues for real-time monitoring and quality control in regenerative medicine manufacturing. Our research fills an important gap in the field by providing a viable, noninvasive alternative to traditional invasive methods for assessing pluripotency. This innovation is expected to make a significant contribution to improving regenerative medicine manufacturing because it will enable a more detailed and feasible understanding of cellular status during the manufacturing process.


Subject(s)
Biomarkers , Induced Pluripotent Stem Cells , Induced Pluripotent Stem Cells/metabolism , Induced Pluripotent Stem Cells/cytology , Biomarkers/metabolism , Humans , Octamer Transcription Factor-3/metabolism , Octamer Transcription Factor-3/genetics , Nanog Homeobox Protein/metabolism , Nanog Homeobox Protein/genetics , Image Processing, Computer-Assisted/methods , Machine Learning , Regenerative Medicine/methods , Flow Cytometry/methods , Animals , Cell Differentiation , Cells, Cultured
11.
Clin Exp Pharmacol Physiol ; 51(8): e13908, 2024 Aug.
Article in English | MEDLINE | ID: mdl-39075744

ABSTRACT

M. Luo , Z. Liu , H. Hao , T. Lu , M. Chen , M. Lei , C.M. Verfaillie , and Z. Liu , "High Glucose Facilitates Cell Cycle Arrest of Rat Bone Marrow Multipotent Adult Progenitor Cells through Transforming Growth Factor-ß1 and Extracellular Signal-Regulated Kinase 1/2 Signalling without Changing Oct4 Expression," Clinical and Experimental Pharmacology and Physiology 39, no. 10 (2012): 843-851. https://doi.org/10.1111/j.1440-1681.2012.05747.x This Expression of Concern is for the above article, published online on 14 July 2012, in Wiley Online Library (wileyonlinelibrary.com), and has been issued by agreement between the journal Editor-in-Chief, Yang Yang, and the Publisher, John Wiley & Sons Australia, Ltd. The Expression of Concern has been agreed due to concerns raised by a third party after publication regarding the similarity of certain blots in Figures 2 and 3 and the underlying data that they represent. The authors did not respond to multiple requests for the original data. The journal is issuing this Expression of Concern because the concerns regarding the integrity of the data and the results presented cannot be resolved.


Subject(s)
Cell Cycle Checkpoints , Glucose , MAP Kinase Signaling System , Octamer Transcription Factor-3 , Transforming Growth Factor beta1 , Animals , Rats , Glucose/metabolism , Transforming Growth Factor beta1/metabolism , Octamer Transcription Factor-3/metabolism , Octamer Transcription Factor-3/genetics , MAP Kinase Signaling System/drug effects , Multipotent Stem Cells/metabolism , Multipotent Stem Cells/cytology , Bone Marrow Cells/metabolism , Bone Marrow Cells/cytology , Adult Stem Cells/metabolism , Adult Stem Cells/cytology
12.
Front Immunol ; 15: 1344637, 2024.
Article in English | MEDLINE | ID: mdl-38962013

ABSTRACT

Disulfidptosis, a regulated form of cell death, has been recently reported in cancers characterized by high SLC7A11 expression, including invasive breast carcinoma, lung adenocarcinoma, and hepatocellular carcinoma. However, its role in colon adenocarcinoma (COAD) has been infrequently discussed. In this study, we developed and validated a prognostic model based on 20 disulfidptosis-related genes (DRGs) using LASSO and Cox regression analyses. The robustness and practicality of this model were assessed via a nomogram. Subsequent correlation and enrichment analysis revealed a relationship between the risk score, several critical cancer-related biological processes, immune cell infiltration, and the expression of oncogenes and cell senescence-related genes. POU4F1, a significant component of our model, might function as an oncogene due to its upregulation in COAD tumors and its positive correlation with oncogene expression. In vitro assays demonstrated that POU4F1 knockdown noticeably decreased cell proliferation and migration but increased cell senescence in COAD cells. We further investigated the regulatory role of the DRG in disulfidptosis by culturing cells in a glucose-deprived medium. In summary, our research revealed and confirmed a DRG-based risk prediction model for COAD patients and verified the role of POU4F1 in promoting cell proliferation, migration, and disulfidptosis.


Subject(s)
Adenocarcinoma , Biomarkers, Tumor , Colorectal Neoplasms , Gene Expression Regulation, Neoplastic , Humans , Colorectal Neoplasms/genetics , Colorectal Neoplasms/mortality , Colorectal Neoplasms/diagnosis , Prognosis , Adenocarcinoma/genetics , Adenocarcinoma/mortality , Biomarkers, Tumor/genetics , Female , Cell Line, Tumor , Male , Cell Proliferation/genetics , Gene Expression Profiling , Transcriptome , Nomograms , Octamer Transcription Factor-3/genetics , Cell Movement/genetics
13.
Cancer Cell ; 42(8): 1336-1351.e9, 2024 Aug 12.
Article in English | MEDLINE | ID: mdl-39029462

ABSTRACT

The POU2F3-POU2AF2/3 transcription factor complex is the master regulator of the tuft cell lineage and tuft cell-like small cell lung cancer (SCLC). Here, we identify a specific dependence of the POU2F3 molecular subtype of SCLC (SCLC-P) on the activity of the mammalian switch/sucrose non-fermentable (mSWI/SNF) chromatin remodeling complex. Treatment of SCLC-P cells with a proteolysis targeting chimera (PROTAC) degrader of mSWI/SNF ATPases evicts POU2F3 and its coactivators from chromatin and attenuates downstream signaling. B cell malignancies which are dependent on the POU2F1/2 cofactor, POU2AF1, are also sensitive to mSWI/SNF ATPase degraders, with treatment leading to chromatin eviction of POU2AF1 and IRF4 and decreased IRF4 signaling in multiple myeloma cells. An orally bioavailable mSWI/SNF ATPase degrader significantly inhibits tumor growth in preclinical models of SCLC-P and multiple myeloma without signs of toxicity. This study suggests that POU2F-POU2AF-driven malignancies have an intrinsic dependence on the mSWI/SNF complex, representing a therapeutic vulnerability.


Subject(s)
Lung Neoplasms , Small Cell Lung Carcinoma , Transcription Factors , Humans , Animals , Lung Neoplasms/genetics , Lung Neoplasms/metabolism , Lung Neoplasms/pathology , Mice , Small Cell Lung Carcinoma/genetics , Small Cell Lung Carcinoma/metabolism , Small Cell Lung Carcinoma/pathology , Transcription Factors/metabolism , Transcription Factors/genetics , Cell Line, Tumor , Octamer Transcription Factor-3/metabolism , Octamer Transcription Factor-3/genetics , Xenograft Model Antitumor Assays , Signal Transduction , Gene Expression Regulation, Neoplastic , Octamer Transcription Factor-2
14.
Cancer Cell ; 42(8): 1352-1369.e13, 2024 Aug 12.
Article in English | MEDLINE | ID: mdl-39029464

ABSTRACT

Small cell lung cancers (SCLCs) are composed of heterogeneous subtypes marked by lineage-specific transcription factors, including ASCL1, NEUROD1, and POU2F3. POU2F3-positive SCLCs, ∼12% of all cases, are uniquely dependent on POU2F3 itself; as such, approaches to attenuate POU2F3 expression may represent new therapeutic opportunities. Here using genome-scale screens for regulators of POU2F3 expression and SCLC proliferation, we define mSWI/SNF complexes as top dependencies specific to POU2F3-positive SCLC. Notably, chemical disruption of mSWI/SNF ATPase activity attenuates proliferation of all POU2F3-positive SCLCs, while disruption of non-canonical BAF (ncBAF) via BRD9 degradation is effective in pure non-neuroendocrine POU2F3-SCLCs. mSWI/SNF targets to and maintains accessibility over gene loci central to POU2F3-mediated gene regulatory networks. Finally, clinical-grade pharmacologic disruption of SMARCA4/2 ATPases and BRD9 decreases POU2F3-SCLC tumor growth and increases survival in vivo. These results demonstrate mSWI/SNF-mediated governance of the POU2F3 oncogenic program and suggest mSWI/SNF inhibition as a therapeutic strategy for POU2F3-positive SCLCs.


Subject(s)
Gene Expression Regulation, Neoplastic , Lung Neoplasms , Small Cell Lung Carcinoma , Transcription Factors , Animals , Humans , Mice , Cell Line, Tumor , Cell Proliferation , Chromosomal Proteins, Non-Histone/metabolism , Chromosomal Proteins, Non-Histone/genetics , Lung Neoplasms/genetics , Lung Neoplasms/metabolism , Lung Neoplasms/pathology , Lung Neoplasms/drug therapy , Octamer Transcription Factor-3/metabolism , Octamer Transcription Factor-3/genetics , Small Cell Lung Carcinoma/genetics , Small Cell Lung Carcinoma/metabolism , Small Cell Lung Carcinoma/pathology , Small Cell Lung Carcinoma/drug therapy , Transcription Factors/metabolism , Transcription Factors/genetics
15.
Life Sci ; 352: 122905, 2024 Sep 01.
Article in English | MEDLINE | ID: mdl-38992573

ABSTRACT

AIMS: Colon cancer poses a major threat to human health and a heavy burden on the national economy. As a member of the SOX transcription factor family, SRY-box transcription factor 21 (SOX21) is associated with various cancers, but its mechanism of action in colon cancer remains unclear. This study focused on the molecular mechanisms of transcription factor SOX21 in proliferation and metastasis of colon cancer cells. MAIN METHODS: We analyzed SOX21 expression level and its impact on survival in colon cancer patients by bioinformatics analysis. We used public databases for gene correlation, GSEA enrichment analysis. Cell function experiments (colony formation assay, wound healing assay, Transwell migration and invasion assay) were utilized to determine the impact of SOX21 silencing and over-expression on cell proliferation and metastasis. The luciferase reporter assay, CUT&RUN-qPCR assay and Methylation Specific PCR were used to explore SOX21-POU class 4 homeobox 2 (POU4F2) molecular interactions. The molecular mechanisms were verified by Quantitative real-time PCR and Western blot analysis. KEY FINDINGS: SOX21 is highly expressed and affects the overall survival of colon cancer patients. SOX21 can attenuates POU4F2 methylation state by binding with it. In addition, this interaction facilitate its transcriptional activation of Hedgehog pathway, mediates epithelial-mesenchymal transition (EMT), consequently promoting the proliferation and metastasis of colon cancer cells. SIGNIFICANCE: Our study reveals that SOX21 is an oncogenic molecule and suggests its regulatory role in colon carcinogenesis and progression, providing new insights into the treatment of this disease.


Subject(s)
Cell Proliferation , Colonic Neoplasms , Epithelial-Mesenchymal Transition , Hedgehog Proteins , Signal Transduction , Humans , Epithelial-Mesenchymal Transition/genetics , Colonic Neoplasms/pathology , Colonic Neoplasms/genetics , Colonic Neoplasms/metabolism , Hedgehog Proteins/metabolism , Hedgehog Proteins/genetics , Gene Expression Regulation, Neoplastic , Cell Line, Tumor , Neoplasm Metastasis , Cell Movement , SOXB2 Transcription Factors/metabolism , SOXB2 Transcription Factors/genetics , Octamer Transcription Factor-3/metabolism , Octamer Transcription Factor-3/genetics
16.
Cell Biochem Biophys ; 82(3): 2585-2595, 2024 Sep.
Article in English | MEDLINE | ID: mdl-38963603

ABSTRACT

Oxidative stress hurts the survival of transplanted mesenchymal stem cells (MSCs). Lipopolysaccharide (LPS) preconditioning inhibits apoptotic death in MSCs. Also, Lovastatin's protective effect was reported on MSCs. Here, we investigated the potential of LPS and Lovastatin combination therapy on the survival and proliferation of MSCs. MSCs harvested from adult rats (240-260 g) femur and tibia bone marrow. Third passage MSCs were divided into 6 groups control group, LPS, LPS + Lovastatin (10 and 15 µM), and Lovastatin (10 and 15 µM). Cell survival and proliferation were assessed using an MTT assay 24 h after LPS, Lovastatin, or LPS + Lovastatin treatment. Also, Malondialdehyde (MDA) as a lipid peroxidation marker and antioxidant enzymes such as Glutathione peroxidase (GPX) and Superoxide dismutase (SOD) activity levels evaluated. Finally, the expression level of tumor protein P53 (P53) and octamer-binding transcription factor 4 (OCT4) genes were measured by qRT-PCR test. Lovastatin 10 µM potentiated proliferation and survival of MSCs. It can increase the activity of GPX and SOD. 10 µM Lovastatin could not affect MDA amounts but decreased the expression levels of P53 and Oct4 significantly. Nevertheless, treatment with LPS reduced the survival and proliferation of MSCs, along with a significant reduction in GPX activity. LPS + Lovastatin could increase SOD activity, however, GPX enzyme activity and MSCs proliferation did not change so, and it was not effective. We propose Lovastatin at the dose of 10 µM as a suitable combination agent to increase the survival and proliferation of MSCs in oxidative stress conditions.


Subject(s)
Cell Proliferation , Cell Survival , Glutathione Peroxidase , Lipopolysaccharides , Lovastatin , Mesenchymal Stem Cells , Superoxide Dismutase , Animals , Mesenchymal Stem Cells/cytology , Mesenchymal Stem Cells/drug effects , Mesenchymal Stem Cells/metabolism , Lipopolysaccharides/pharmacology , Rats , Cell Proliferation/drug effects , Lovastatin/pharmacology , Cell Survival/drug effects , Superoxide Dismutase/metabolism , Glutathione Peroxidase/metabolism , Tumor Suppressor Protein p53/metabolism , Tumor Suppressor Protein p53/genetics , Malondialdehyde/metabolism , Octamer Transcription Factor-3/metabolism , Octamer Transcription Factor-3/genetics , Bone Marrow Cells/cytology , Bone Marrow Cells/drug effects , Oxidative Stress/drug effects , Inflammation/drug therapy , Inflammation/metabolism , Inflammation/pathology , Male
17.
Nucleic Acids Res ; 52(14): 8146-8164, 2024 Aug 12.
Article in English | MEDLINE | ID: mdl-38850157

ABSTRACT

During early development, gene expression is tightly regulated. However, how genome organization controls gene expression during the transition from naïve embryonic stem cells to epiblast stem cells is still poorly understood. Using single-molecule microscopy approaches to reach nanoscale resolution, we show that genome remodeling affects gene transcription during pluripotency transition. Specifically, after exit from the naïve pluripotency state, chromatin becomes less compacted, and the OCT4 transcription factor has lower mobility and is more bound to its cognate sites. In epiblast cells, the active transcription hallmark, H3K9ac, decreases within the Oct4 locus, correlating with reduced accessibility of OCT4 and, in turn, with reduced expression of Oct4 nascent RNAs. Despite the high variability in the distances between active pluripotency genes, distances between Nodal and Oct4 decrease during epiblast specification. In particular, highly expressed Oct4 alleles are closer to nuclear speckles during all stages of the pluripotency transition, while only a distinct group of highly expressed Nodal alleles are in close proximity to Oct4 when associated with a nuclear speckle in epiblast cells. Overall, our results provide new insights into the role of the spatiotemporal genome remodeling during mouse pluripotency transition and its correlation with the expression of key pluripotency genes.


Subject(s)
Genome , Germ Layers , Mouse Embryonic Stem Cells , Octamer Transcription Factor-3 , Animals , Mice , Mouse Embryonic Stem Cells/metabolism , Mouse Embryonic Stem Cells/cytology , Octamer Transcription Factor-3/genetics , Octamer Transcription Factor-3/metabolism , Germ Layers/cytology , Germ Layers/metabolism , Genome/genetics , Gene Expression Regulation, Developmental , Chromatin/metabolism , Chromatin/genetics , Cell Differentiation/genetics , Single Molecule Imaging/methods , Pluripotent Stem Cells/metabolism , Pluripotent Stem Cells/cytology , Histones/metabolism , Histones/genetics , Chromatin Assembly and Disassembly
18.
Cells Dev ; 179: 203933, 2024 Sep.
Article in English | MEDLINE | ID: mdl-38908828

ABSTRACT

Using a transgenic zebrafish line harboring a heat-inducible dominant-interference pou5f3 gene (en-pou5f3), we reported that this PouV gene is involved in isthmus development at the midbrain-hindbrain boundary (MHB), which patterns the midbrain and cerebellum. Importantly, the functions of pou5f3 reportedly differ before and after the end of gastrulation. In the present study, we examined in detail the effects of en-pou5f3 induction on isthmus development during embryogenesis. When en-pou5f3 was induced around the end of gastrulation (bud stage), the isthmus was abrogated or deformed by the end of somitogenesis (24 hours post-fertilization). At this stage, the expression of MHB markers -- such as pax2a, fgf8a, wnt1, and gbx2 -- was absent in embryos lacking the isthmus structure, whereas it was present, although severely distorted, in embryos with a deformed isthmus. We further found that, after en-pou5f3 induction at late gastrulation, pax2a, fgf8a, and wnt1 were immediately and irreversibly downregulated, whereas the expression of en2a and gbx2 was reduced only weakly and slowly. Induction of en-pou5f3 at early somite stages also immediately downregulated MHB genes, particularly pax2a, but their expression was restored later. Overall, the data suggested that pou5f3 directly upregulates at least pax2a and possibly fgf8a and wnt1, which function in parallel in establishing the MHB, and that the role of pou5f3 dynamically changes around the end of gastrulation. We next examined the transcriptional regulation of pax2a using both in vitro and in vivo reporter analyses; the results showed that two upstream 1.0-kb regions with sequences conserved among vertebrates specifically drove transcription at the MHB. These reporter analyses confirmed that development of the isthmic organizer is regulated by PouV through direct regulation of pax2/pax2a in vertebrate embryos.


Subject(s)
Gene Expression Regulation, Developmental , PAX2 Transcription Factor , Zebrafish Proteins , Zebrafish , Animals , Zebrafish/genetics , Zebrafish/embryology , Zebrafish/metabolism , PAX2 Transcription Factor/metabolism , PAX2 Transcription Factor/genetics , Zebrafish Proteins/genetics , Zebrafish Proteins/metabolism , Gastrulation/genetics , Animals, Genetically Modified , Wnt1 Protein/genetics , Wnt1 Protein/metabolism , Embryo, Nonmammalian/metabolism , POU Domain Factors/genetics , POU Domain Factors/metabolism , Octamer Transcription Factor-3/metabolism , Octamer Transcription Factor-3/genetics , Embryonic Development/genetics , Mesencephalon/metabolism , Mesencephalon/embryology , Homeodomain Proteins/metabolism , Homeodomain Proteins/genetics , Somites/metabolism , Somites/embryology , Fibroblast Growth Factors
19.
Cell ; 187(15): 4010-4029.e16, 2024 Jul 25.
Article in English | MEDLINE | ID: mdl-38917790

ABSTRACT

Mammalian blastocyst formation involves the specification of the trophectoderm followed by the differentiation of the inner cell mass into embryonic epiblast and extra-embryonic primitive endoderm (PrE). During this time, the embryo maintains a window of plasticity and can redirect its cellular fate when challenged experimentally. In this context, we found that the PrE alone was sufficient to regenerate a complete blastocyst and continue post-implantation development. We identify an in vitro population similar to the early PrE in vivo that exhibits the same embryonic and extra-embryonic potency and can form complete stem cell-based embryo models, termed blastoids. Commitment in the PrE is suppressed by JAK/STAT signaling, collaborating with OCT4 and the sustained expression of a subset of pluripotency-related transcription factors that safeguard an enhancer landscape permissive for multi-lineage differentiation. Our observations support the notion that transcription factor persistence underlies plasticity in regulative development and highlight the importance of the PrE in perturbed development.


Subject(s)
Blastocyst , Cell Differentiation , Endoderm , Animals , Endoderm/metabolism , Endoderm/cytology , Mice , Blastocyst/metabolism , Blastocyst/cytology , Cell Lineage , Octamer Transcription Factor-3/metabolism , Octamer Transcription Factor-3/genetics , Signal Transduction , Embryonic Development , Janus Kinases/metabolism , Gene Expression Regulation, Developmental , STAT Transcription Factors/metabolism , Transcription Factors/metabolism , Female , Embryo, Mammalian/metabolism , Embryo, Mammalian/cytology
20.
Medicina (Kaunas) ; 60(6)2024 May 26.
Article in English | MEDLINE | ID: mdl-38929487

ABSTRACT

Background and Objectives: Lung adenocarcinoma is a leading cause of cancer-related mortality despite recent therapeutic advances. Cancer stem cells have gained increasing attention due to their ability to induce cancer cell proliferation through self-renewal and differentiation into multiple cell lineages. OCT4 and LIN28 (and their homologs A and B) have been identified as key regulators of pluripotency in mammalian embryonic (ES) and induced stem (IS) cells, and they are the crucial regulators of cancer progression. However, their exact role in lung adenocarcinoma has not yet been clarified. Materials and Methods: The aim of this study was to explore the role of the pluripotency factors OCT4 and LIN28 in a cohort of surgically resected human lung adenocarcinomas to reveal possible biomarkers for lung adenocarcinoma prognosis and potential therapeutic targets. The expressions of OCT4, LIN28A and LIN28B were analyzed in formalin-fixed, paraffin-embedded tissue samples from 96 patients with lung adenocarcinoma by immunohistochemistry. The results were analyzed with clinicopathologic parameters and were related to the prognosis of patients. Results: Higher OCT4 expression was related to an improved 5-year overall survival (OS) rate (p < 0.001). Nuclear LIN28B expression was lower in stage I and II tumors (p < 0.05) compared to advanced stage tumors. LIN28B cytoplasmic expression was associated with 5-year OS rates not only in univariate (p < 0.005), but also in multivariate analysis (where age, gender, histopathological subtype and stage were used as cofactors, p < 0.01 HR = 2.592). Patients with lower LIN28B expression showed improved 5-year OS rates compared to patients with increased LIN28B expression. Conclusions: Our findings indicate that OCT4 and LIN28B are implicated in lung adenocarcinoma progression and prognosis outcome; thus, they serve as promising prognostic biomarkers and putative therapeutic targets in lung adenocarcinomas.


Subject(s)
Adenocarcinoma of Lung , Lung Neoplasms , Octamer Transcription Factor-3 , RNA-Binding Proteins , Humans , Octamer Transcription Factor-3/analysis , Octamer Transcription Factor-3/metabolism , Male , Female , RNA-Binding Proteins/analysis , Middle Aged , Lung Neoplasms/mortality , Lung Neoplasms/pathology , Adenocarcinoma of Lung/pathology , Adenocarcinoma of Lung/mortality , Aged , Adenocarcinoma/mortality , Adenocarcinoma/pathology , Adenocarcinoma/metabolism , Prognosis , Biomarkers, Tumor/analysis , Adult , Survival Analysis , Immunohistochemistry , Aged, 80 and over
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