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1.
Mar Biotechnol (NY) ; 25(6): 1099-1109, 2023 Dec.
Article de Anglais | MEDLINE | ID: mdl-37864761

RÉSUMÉ

The marine environment is a rich reservoir of diverse biological entities, many of which possess unique properties that are of immense value to biotechnological applications. One such example is the red fluorescent protein derived from the coral Discosoma sp. This protein, encoded by the DsRed gene, has been the subject of extensive research due to its potential applications in various fields. In the study, a variant of the red fluorescent protein was generated through random mutagenesis using the DsRed2 gene as a template. The process employed error-prone PCR (epPCR) to introduce random mutations, leading to the isolation of twelve gene variants. Among these, one variant stood out due to its unique spectral properties, exhibiting dual fluorescence emission at both 480 nm (green) and 550 nm (red). This novel variant was expressed in both Escherichia coli and zebrafish (Danio rerio) muscle, confirming the dual fluorescence emission in both model systems. One of the immediate applications of this novel protein variant is in ornamental aquaculture. The dual fluorescence can serve as a unique marker or trait, enhancing the aesthetic appeal of aquatic species in ornamental settings.


Sujet(s)
Anthozoa , Red Fluorescent Protein , Animaux , Fluorescence , Danio zébré/génétique , Danio zébré/métabolisme , Protéines luminescentes/génétique , Protéines luminescentes/métabolisme , Anthozoa/génétique , Anthozoa/métabolisme , Biotechnologie , Protéines à fluorescence verte
2.
Int J Biol Macromol ; 189: 734-743, 2021 Oct 31.
Article de Anglais | MEDLINE | ID: mdl-34455007

RÉSUMÉ

This work aimed the application of a new biocatalyst for biodiesel production from residual agro-industrial fatty acids. A recombinant Pichia pastoris displaying lipase from Rhizomucor miehei (RML) on the cell surface, using the PIR-1 anchor system, were prepared using glycerol as the carbon source. The biocatalyst, named RML-PIR1 showed optimum temperature of 45 °C (74.0 U/L). The stability tests resulted in t1/2 of 3.49 and 2.15 h at 40 and 45 °C, respectively. RML-PIR1 was applied in esterification reactions using industrial co-products as substrates, palm fatty acid distillate (PFAD) and soybean fatty acid distillate (SFAD). The highest productivity was observed for SFAD after 48 h presenting 79.1% of conversion using only 10% of biocatalyst and free-solvent system. This is about ca. eight times higher than commercial free RML in the same conditions. The stabilizing agents study revealed that the treatment using glutaraldehyde (GA) and poly(ethylene glycol) (PEG) enabled increased stability and reuse of biocatalyst. It was observed by SEM analysis that the treatment modified the cell morphology. RML-PIR1-GA presented 87.9% of the initial activity after 6 reuses, whilst the activity of unmodified RML-PIR decreased by 40% after the first use. These results were superior to those obtained in the literature, making this new biocatalyst promising for biotechnological applications, such as the production of biofuels on a large scale.


Sujet(s)
Agriculture , Biocarburants/microbiologie , Déchets industriels , Triacylglycerol lipase/métabolisme , Rhizomucor/enzymologie , Saccharomycetales/métabolisme , Biocatalyse , Estérification , Spécificité du substrat , Température
3.
J Venom Anim Toxins Incl Trop Dis ; 27: e20200127, 2021 Mar 12.
Article de Anglais | MEDLINE | ID: mdl-33796137

RÉSUMÉ

BACKGROUND: Insects can be found in numerous diverse environments, being exposed to pathogenic organisms like fungi and bacteria. Once these pathogens cross insect physical barriers, the innate immune system operates through cellular and humoral responses. Antimicrobial peptides are small molecules produced by immune signaling cascades that develop an important and generalist role in insect defenses against a variety of microorganisms. In the present work, a cecropin B-like peptide (AgCecropB) sequence was identified in the velvetbean caterpillar Anticarsia gemmatalis and cloned in a bacterial plasmid vector for further heterologous expression and antimicrobial tests. METHODS: AgCecropB sequence (without the signal peptide) was cloned in the plasmid vector pET-M30-MBP and expressed in the Escherichia coli BL21(DE3) expression host. Expression was induced with IPTG and a recombinant peptide was purified using two affinity chromatography steps with Histrap column. The purified peptide was submitted to high-resolution mass spectrometry (HRMS) and structural analyses. Antimicrobial tests were performed using gram-positive (Bacillus thuringiensis) and gram-negative (Burkholderia kururiensis and E. coli) bacteria. RESULTS: AgCecropB was expressed in E. coli BL21 (DE3) at 28°C with IPTG 0.5 mM. The recombinant peptide was purified and enriched after purification steps. HRMS confirmed AgCrecropB molecular mass (4.6 kDa) and circular dichroism assay showed α-helix structure in the presence of SDS. AgCrecropB inhibited almost 50% of gram-positive B. thuringiensis bacteria growth. CONCLUSIONS: The first cecropin B-like peptide was described in A. gemmatalis and a recombinant peptide was expressed using a bacterial platform. Data confirmed tertiary structure as predicted for the cecropin peptide family. AgCecropB was capable to inhibit B. thuringiensis growth in vitro.

4.
J. Venom. Anim. Toxins incl. Trop. Dis. ; 27: e20200127, 2021. graf, tab
Article de Anglais | VETINDEX | ID: vti-31981

RÉSUMÉ

Insects can be found in numerous diverse environments, being exposed to pathogenic organisms like fungi and bacteria. Once these pathogens cross insect physical barriers, the innate immune system operates through cellular and humoral responses. Antimicrobial peptides are small molecules produced by immune signaling cascades that develop an important and generalist role in insect defenses against a variety of microorganisms. In the present work, a cecropin B-like peptide (AgCecropB) sequence was identified in the velvetbean caterpillar Anticarsia gemmatalis and cloned in a bacterial plasmid vector for further heterologous expression and antimicrobial tests. Methods AgCecropB sequence (without the signal peptide) was cloned in the plasmid vector pET-M30-MBP and expressed in the Escherichia coli BL21(DE3) expression host. Expression was induced with IPTG and a recombinant peptide was purified using two affinity chromatography steps with Histrap column. The purified peptide was submitted to high-resolution mass spectrometry (HRMS) and structural analyses. Antimicrobial tests were performed using gram-positive (Bacillus thuringiensis) and gram-negative (Burkholderia kururiensis and E. coli) bacteria. Results AgCecropB was expressed in E. coli BL21 (DE3) at 28°C with IPTG 0.5 mM. The recombinant peptide was purified and enriched after purification steps. HRMS confirmed AgCrecropB molecular mass (4.6 kDa) and circular dichroism assay showed α-helix structure in the presence of SDS. AgCrecropB inhibited almost 50% of gram-positive B. thuringiensis bacteria growth. Conclusions The first cecropin B-like peptide was described in A. gemmatalis and a recombinant peptide was expressed using a bacterial platform. Data confirmed tertiary structure as predicted for the cecropin peptide family. AgCecropB was capable to inhibit B. thuringiensis growth in vitro.(AU)


Sujet(s)
Animaux , Peptides , Glycine max/microbiologie , Perforines/classification , Cécropines/administration et posologie , Système immunitaire
5.
J. venom. anim. toxins incl. trop. dis ; J. venom. anim. toxins incl. trop. dis;27: e20200127, 2021. graf, tab
Article de Anglais | LILACS, VETINDEX | ID: biblio-1154767

RÉSUMÉ

Insects can be found in numerous diverse environments, being exposed to pathogenic organisms like fungi and bacteria. Once these pathogens cross insect physical barriers, the innate immune system operates through cellular and humoral responses. Antimicrobial peptides are small molecules produced by immune signaling cascades that develop an important and generalist role in insect defenses against a variety of microorganisms. In the present work, a cecropin B-like peptide (AgCecropB) sequence was identified in the velvetbean caterpillar Anticarsia gemmatalis and cloned in a bacterial plasmid vector for further heterologous expression and antimicrobial tests. Methods AgCecropB sequence (without the signal peptide) was cloned in the plasmid vector pET-M30-MBP and expressed in the Escherichia coli BL21(DE3) expression host. Expression was induced with IPTG and a recombinant peptide was purified using two affinity chromatography steps with Histrap column. The purified peptide was submitted to high-resolution mass spectrometry (HRMS) and structural analyses. Antimicrobial tests were performed using gram-positive (Bacillus thuringiensis) and gram-negative (Burkholderia kururiensis and E. coli) bacteria. Results AgCecropB was expressed in E. coli BL21 (DE3) at 28°C with IPTG 0.5 mM. The recombinant peptide was purified and enriched after purification steps. HRMS confirmed AgCrecropB molecular mass (4.6 kDa) and circular dichroism assay showed α-helix structure in the presence of SDS. AgCrecropB inhibited almost 50% of gram-positive B. thuringiensis bacteria growth. Conclusions The first cecropin B-like peptide was described in A. gemmatalis and a recombinant peptide was expressed using a bacterial platform. Data confirmed tertiary structure as predicted for the cecropin peptide family. AgCecropB was capable to inhibit B. thuringiensis growth in vitro.(AU)


Sujet(s)
Animaux , Peptides , Glycine max/microbiologie , Perforines/classification , Cécropines/administration et posologie , Système immunitaire
6.
Enzyme Microb Technol ; 140: 109621, 2020 Oct.
Article de Anglais | MEDLINE | ID: mdl-32912681

RÉSUMÉ

Yarrowia lipolytica IMUFRJ 50682 is a Brazilian wild-type strain with potential application in bioconversion processes which can be improved through synthetic biology. In this study, we focused on a combinatorial dual cleavage CRISPR/Cas9-mediated for construction of irreversible auxotrophic mutants IMUFRJ 50682, which genomic information is not available, thought paired sgRNAs targeting upstream and downstream sites of URA3 gene. The disruption efficiency ranged from 5 to 28 % for sgRNAs combinations closer to URA3's start and stop codon and the auxotrophic mutants lost about 970 bp containing all coding sequence, validating this method for genomic edition of wild-type strains. In addition, we introduced a fluorescent phenotype and achieved cloning rates varying from 80 to 100 %. The ura3Δ strains IMUFRJ 50682 were also engineered for ß-carotene synthesis as proof of concept. Carotenoid-producing strains exhibited a similar growth profile compared to the wild-type strain and were able to synthesized 30.54-50.06 mg/L (up to 4.8 mg/g DCW) of ß-carotene in YPD and YNB flask cultures, indicating a promisor future of the auxotrophic mutants IMUFRJ 50682 as a chassis for production of novel value-added chemicals.


Sujet(s)
Systèmes CRISPR-Cas , Génie métabolique/méthodes , Yarrowia/génétique , Protéine-9 associée à CRISPR/génétique , Protéine-9 associée à CRISPR/métabolisme , Milieux de culture/métabolisme , Fluorescence , Protéines fongiques/génétique , Ciblage de gène , Mutation , 30530/génétique , Uracile/métabolisme , Yarrowia/croissance et développement , Yarrowia/métabolisme , Bêtacarotène/biosynthèse , Bêtacarotène/génétique
7.
Protein Expr Purif ; 159: 21-26, 2019 07.
Article de Anglais | MEDLINE | ID: mdl-30836141

RÉSUMÉ

l-asparaginase catalyzes the conversion of l-asparagine to l-aspartate and ammonium. This protein is an important therapeutic enzyme used for the treatment of acute lymphoblastic leukemia. In this study, the asparaginase II-encoding gene ASP3 from Saccharomyces cerevisiae was cloned into the expression vector pET28a in-fusion with a 6x histidine tag and was expressed in Escherichia coli BL21 (DE3) cells. The protein was expressed at a high level (225.6 IU/g cells) as an intracellular and soluble molecule and was purified from the supernatant by nickel affinity chromatography. The enzyme showed very low activity against l-glutamine. The denaturing electrophoresis analysis indicated that the recombinant protein had a molecular mass of ∼38 kDa. The native enzyme was a tetramer with a molecular mass of approximately 178 kDa. The enzyme preparation showed antitumor activity against the K562 and Jurkat cell lines comparable or even superior to the E. coli commercial asparaginase.


Sujet(s)
Antinéoplasiques/métabolisme , Asparaginase/génétique , Protéines bactériennes/génétique , Escherichia coli/métabolisme , Protéines recombinantes/génétique , Saccharomyces cerevisiae/génétique , Antinéoplasiques/composition chimique , Asparaginase/composition chimique , Asparaginase/métabolisme , Asparagine/métabolisme , Protéines bactériennes/composition chimique , Protéines bactériennes/métabolisme , Lignée cellulaire tumorale , Clonage moléculaire , Expression des gènes , Glutamine/métabolisme , Humains , Masse moléculaire , Leucémie-lymphome lymphoblastique à précurseurs B et T/traitement médicamenteux , Protéines recombinantes/composition chimique , Protéines recombinantes/métabolisme
8.
Braz J Microbiol ; 50(2): 405-413, 2019 Apr.
Article de Anglais | MEDLINE | ID: mdl-30827000

RÉSUMÉ

The effect of gene dosage on the production of Candida antarctica lipase B (CalB) in the methylotrophic yeast Komagataella phaffii, at high densities in a simple medium containing crude glycerin as the sole carbon source, is described. The use of crude glycerin, the main by-product of biodiesel production from vegetable oils, will reduce the production cost of the bioprocess. Two K. phaffii strains were constructed with one or three copies of LipB, an optimized version of the gene encoding CalB under the control of the constitutive PPGK1 promoter. These two constructs were tested and compared on batches using minimal-salts medium with crude glycerin. The strain with three copies achieved a higher enzyme yield (48,760 U/L, 2.3-fold higher than the one-copy strain), with 42 g/L biomass, with no effects on growth.


Sujet(s)
Candida/enzymologie , Candida/génétique , Protéines fongiques/biosynthèse , Protéines fongiques/génétique , Triacylglycerol lipase/biosynthèse , Triacylglycerol lipase/génétique , Pichia/génétique , Saccharomycetales/métabolisme , Candida/métabolisme , Dosage génique/génétique , Glycérol/métabolisme , Régions promotrices (génétique)/génétique , Saccharomycetales/génétique
9.
PLoS One ; 12(8): e0183857, 2017.
Article de Anglais | MEDLINE | ID: mdl-28837648

RÉSUMÉ

A modified Pseudomonas aeruginosa strain capable of overexpressing the estA gene, an encoding gene for a membrane-bound esterase, was constructed and its rhamnolipid (RML) production was studied. Fermentations using wild-type (WT) and modified P. aeruginosa strains were conducted until exhaustion of glycerol in Medium Salt Production, using two different C/N ratios. At a C/N of 83.2, the modified strain produced up to 3.9 times more RMLs than the WT, yielding a maximum concentration of 14.62 g/L RML when measured by HPLC and 22 g/L by the orcinol assay. Cell-free supernatant from the modified strain reduced surface tension to 29.4 mN/m and had a CMC of 240 mg/L and CMD of 56.05. This is the first report on the construction of an estA-based recombinant strain for RML production.


Sujet(s)
Gènes bactériens , Glycolipides/biosynthèse , Pseudomonas aeruginosa/métabolisme , Chromatographie en phase liquide à haute performance , Chromatographie sur couche mince , Milieux de culture , Fermentation , Pseudomonas aeruginosa/génétique , Tension superficielle , Tensioactifs/pharmacologie
10.
PLoS Negl Trop Dis ; 11(7): e0005829, 2017 Jul.
Article de Anglais | MEDLINE | ID: mdl-28759578

RÉSUMÉ

Snakebite envenomation is a neglected condition that constitutes a public health problem in tropical and subtropical countries, including Brazil. Interestingly, some animals are resistant to snake envenomation due to the presence of inhibitory glycoproteins in their serum that target toxic venom components. DM64 is an acidic glycoprotein isolated from Didelphis aurita (opossum) serum that has been characterized as an inhibitor of the myotoxicity induced by bothropic toxins bearing phospholipase A2 (PLA2) structures. This antitoxic protein can serve as an excellent starting template for the design of novel therapeutics against snakebite envenomation, particularly venom-induced local tissue damage. Therefore, the aim of this work was to produce a recombinant DM64 (rDM64) in the methylotrophic yeast Pichia pastoris and to compare its biological properties with those of native DM64. Yeast fermentation in the presence of Pefabloc, a serine protease inhibitor, stimulated cell growth (~1.5-fold), increased the rDM64 production yield approximately 10-fold and significantly reduced the susceptibility of rDM64 to proteolytic degradation. P. pastoris fermentation products were identified by mass spectrometry and Western blotting. The heterologous protein was efficiently purified from the culture medium by affinity chromatography (with immobilized PLA2 myotoxin) and/or an ion exchange column. Although both native and recombinant DM64 exhibit different glycosylation patterns, they show very similar electrophoretic mobilities after PNGase F treatment. rDM64 formed a noncovalent complex with myotoxin II (Lys49-PLA2) from Bothrops asper and displayed biological activity that was similar to that of native DM64, inhibiting the cytotoxicity of myotoxin II by 92% at a 1:1 molar ratio.


Sujet(s)
Protéines du sang/composition chimique , Inhibiteurs de la phospholipase A2/composition chimique , Phospholipases A2/composition chimique , Protéines de reptiles/composition chimique , Venins de serpent/composition chimique , Séquence d'acides aminés , Animaux , Protéines du sang/biosynthèse , Bothrops , Brésil , Lignée cellulaire , Spectrométrie de masse , Souris , Opossum , Pichia , Protéines recombinantes/biosynthèse
11.
PLoS One ; 11(6): e0156692, 2016.
Article de Anglais | MEDLINE | ID: mdl-27253887

RÉSUMÉ

L-asparaginase is an enzyme used as a chemotherapeutic agent, mainly for treating acute lymphoblastic leukemia. In this study, the gene of L-asparaginase from Zymomonas mobilis was cloned in pET vectors, fused to a histidine tag, and had its codons optimized. The L-asparaginase was expressed extracellularly and intracellularly (cytoplasmically) in Escherichia coli in far larger quantities than obtained from the microorganism of origin, and sufficient for initial cytotoxicity tests on leukemic cells. The in silico analysis of the protein from Z. mobilis indicated the presence of a signal peptide in the sequence, as well as high identity to other sequences of L-asparaginases with antileukemic activity. The protein was expressed in a bioreactor with a complex culture medium, yielding 0.13 IU/mL extracellular L-asparaginase and 3.6 IU/mL intracellular L-asparaginase after 4 h of induction with IPTG. The cytotoxicity results suggest that recombinant L-asparaginase from Z. mobilis expressed extracellularly in E.coli has a cytotoxic and cytostatic effect on leukemic cells.


Sujet(s)
Antinéoplasiques/usage thérapeutique , Asparaginase/usage thérapeutique , Escherichia coli/métabolisme , Leucémies/traitement médicamenteux , Protéines recombinantes/usage thérapeutique , Zymomonas/enzymologie , Antinéoplasiques/pharmacologie , Apoptose/effets des médicaments et des substances chimiques , Asparaginase/génétique , Asparaginase/pharmacologie , Séquence nucléotidique , Bioréacteurs , Cycle cellulaire/effets des médicaments et des substances chimiques , Lignée cellulaire tumorale , Forme du noyau cellulaire/effets des médicaments et des substances chimiques , Prolifération cellulaire/effets des médicaments et des substances chimiques , Survie cellulaire/effets des médicaments et des substances chimiques , Enfant , Enfant d'âge préscolaire , Clonage moléculaire , Simulation numérique , Femelle , Humains , Nourrisson , Leucémies/anatomopathologie , Mâle , Phylogenèse , Protéines recombinantes/génétique , Protéines recombinantes/pharmacologie
12.
Hist. ciênc. saúde-Manguinhos ; Hist. ciênc. saúde-Manguinhos;22(4): 1321-1333, out.-dez. 2015.
Article de Anglais | LILACS | ID: lil-767028

RÉSUMÉ

Among the epistemological obstacles described by Gaston Bachelard, we contend that unitary and pragmatic knowledge is correlated to the teleological categories of Ernst Mayr and is the basis for prevailing debate on the notion of "function" in biology. Given the proximity of the aspects highlighted by these authors, we propose to associate the role of teleological thinking in biology and the notion of unitary and pragmatic knowledge as an obstacle to scientific knowledge. Thus, teleological thinking persists acting as an epistemological obstacle in biology, according to Bachelardian terminology. Our investigation led us to formulate the "teleological obstacle," which we consider important for the future of biology and possibly other sciences.


Dentre os obstáculos epistemológicos descritos por Gaston Bachelard, propomos que o conhecimento unitário e pragmático se relaciona com as categorias de teleologia propostas por Ernst Mayr e fundamenta as discussões atuais sobre a noção de "função" em biologia. Dada a proximidade dos aspectos salientados por ambos, propomos relacionar o papel do pensamento teleológico na biologia e a noção do conhecimento unitário e pragmático como obstáculo ao conhecimento científico. O pensamento teleológico, portanto, ainda atua como obstáculo epistemológico na biologia, segundo a terminologia bachelardiana. Nossas investigações nos levaram à formulação do "obstáculo teleológico", que entendemos ser importante para o desenvolvimento da biologia e possivelmente para outras ciências.


Sujet(s)
Philosophie , Biologie , Science
13.
PLoS One ; 10(10): e0141454, 2015.
Article de Anglais | MEDLINE | ID: mdl-26510006

RÉSUMÉ

Yeast Surface Display (YSD) is a strategy to anchor proteins on the yeast cell wall which has been employed to increase enzyme stability thus decreasing production costs. Lipase B from Candida antarctica (LipB) is one of the most studied enzymes in the context of industrial biotechnology. This study aimed to assess the biochemical features of this important biocatalyst when immobilized on the cell surface of the methylotrophic yeast Pichia pastoris using the YSD approach. For that purpose, two anchors were tested. The first (Flo9) was identified after a prospection of the P. pastoris genome being related to the family of flocculins similar to Flo1 but significantly smaller. The second is the Protein with Internal Repeats (Pir1) from P. pastoris. An immunolocalization assay showed that both anchor proteins were able to display the reporter protein EGFP in the yeast outer cell wall. LipB was expressed in P. pastoris fused either to Flo9 (FLOLIPB) or Pir1 (PIRLIPB). Both constructions showed hydrolytic activity towards tributyrin (>100 U/mgdcw and >80 U/mgdcw, respectively), optimal hydrolytic activity around 45°C and pH 7.0, higher thermostability at 45°C and stability in organic solvents when compared to a free lipase.


Sujet(s)
Candida/génétique , Techniques d'exposition à la surface cellulaire , Triacylglycerol lipase/génétique , Pichia/génétique , Techniques de double hybride , Candida/enzymologie , Catalyse , Biologie informatique/méthodes , Stabilité enzymatique , Expression des gènes , Gènes rapporteurs , Concentration en ions d'hydrogène , Triacylglycerol lipase/métabolisme , Pichia/métabolisme , Température
14.
PLoS One ; 10(6): e0131624, 2015.
Article de Anglais | MEDLINE | ID: mdl-26111144

RÉSUMÉ

The great potential of lipases is known since 1930 when the work of J. B. S. Haldane was published. After eighty-five years of studies and developments, are lipases still important biocatalysts? For answering this question the present work investigated the technological development of four important industrial sectors where lipases are applied: production of detergent formulations; organic synthesis, focusing on kinetic resolution, production of biodiesel, and production of food and feed products. The analysis was made based on research publications and patent applications, working as scientific and technological indicators, respectively. Their evolution, interaction, the major players of each sector and the main subject matters disclosed in patent documents were discussed. Applying the concept of technology life cycle, S-curves were built by plotting cumulative patent data over time to monitor the attractiveness of each technology for investment. The results lead to a conclusion that the use of lipases as biocatalysts is still a relevant topic for the industrial sector, but developments are still needed for lipase biocatalysis to reach its full potential, which are expected to be achieved within the third, and present, wave of biocatalysis.


Sujet(s)
Biocatalyse , Biotechnologie/tendances , Triacylglycerol lipase/composition chimique , Aliment pour animaux , Animaux , Biocarburants , Détergents/synthèse chimique , Détergents/composition chimique , Industrie alimentaire , Prévision , Humains , Brevets comme sujet/statistiques et données numériques , Publications/statistiques et données numériques
15.
Hist Cienc Saude Manguinhos ; 22(4): 1321-33, 2015 Dec.
Article de Anglais | MEDLINE | ID: mdl-25650703

RÉSUMÉ

Among the epistemological obstacles described by Gaston Bachelard, we contend that unitary and pragmatic knowledge is correlated to the teleological categories of Ernst Mayr and is the basis for prevailing debate on the notion of "function" in biology. Given the proximity of the aspects highlighted by these authors, we propose to associate the role of teleological thinking in biology and the notion of unitary and pragmatic knowledge as an obstacle to scientific knowledge. Thus, teleological thinking persists acting as an epistemological obstacle in biology, according to Bachelardian terminology. Our investigation led us to formulate the "teleological obstacle," which we consider important for the future of biology and possibly other sciences.


Sujet(s)
Biologie , Philosophie , Science
16.
Protein Expr Purif ; 88(1): 26-32, 2013 Mar.
Article de Anglais | MEDLINE | ID: mdl-23201282

RÉSUMÉ

The need to find more stable catalysts has encouraged the study of naturally resilient enzymes, such as those found in extremophile organisms. In the present work, the influence of rare codons on the expression in Escherichia coli of the lipase Pf2001Δ60 from Pyrococcus furiosus was evaluated. Expression was carried out in two E. coli strains, BL21(DE3)pLysS and the rare tRNA supplemented Rosetta(DE3)pLysS. 3(2) factorial design was used to appraise the influence of temperature and inducer concentration on enzyme expression every hour for the 4-h expression period. Four response surfaces were constructed for each time, and the statistical parameters were evaluated. Lipase production was twice as high for Rosetta(DE3)pLysS than for BL21(DE3)pLysS. The factorial design indicated that optimal expression occurred at 30 °C after 4h, with lipase production of 240 U/L. The analysis of statistical parameters during the expression time showed that the velocity at which the enzyme was produced affected cell growth and maximum activity, with a higher speed leading to lower expression and cell growth. The presence of rare tRNAs prevented bottlenecks in lipase expression, and the experimental design was shown to be important for maximizing the production strategies and minimizing the metabolic load to which the host is subjected.


Sujet(s)
Stabilité enzymatique/génétique , Triacylglycerol lipase/génétique , Pyrococcus furiosus/enzymologie , Protéines de fusion recombinantes/biosynthèse , Clonage moléculaire , Codon , Escherichia coli , Régulation de l'expression des gènes bactériens , Triacylglycerol lipase/biosynthèse , ARN de transfert/génétique , Protéines de fusion recombinantes/génétique , Propriétés de surface , Température
17.
Cienc. cogn ; 17(2): 76-97, jul. 2012. ilus, tab
Article de Portugais | Index Psychologie - Revues | ID: psi-56792

RÉSUMÉ

A partir do estudo da epistemologia de Bachelard na disciplina Lógica e Filosofia da Ciência da Pós-Graduação em Bioquímica do Instituto de Química/Universidade Federal do Rio de Janeiro (IQ/UFRJ), buscou-se identificar obstáculos epistemológicos entre pós-graduandos em bioquímica e áreas correlatas. Um questionário com perguntas e excertos de artigos científicos de revistas de alto fator de impacto foi respondido, anonimamente, por pós-graduandos de diferentes cursos da UFRJ e de outras universidades, que nunca cursaram disciplina relacionada à epistemologia. Foi possível identificar concepções vitalistas (animismo) tanto nas respostas às perguntas como na aceitação ou não identificação deste obstáculo nos excertos. O obstáculo pragmático e unitário foi identificado através de uma concepção teleológica dos processos evolutivos, em afirmações como a existência de objetivos/finalidades na adaptação dos organismos. Verificou-se a presença de figuras de linguagem, metáforas e analogias (obstáculo verbal) na explicação da evolução e do sistema imune, também encontradas nos excertos dos artigos. Foram também identificados obstáculos associados à observação primeira e generalização prematura. A partir deste diagnóstico verificou-se a necessidade de enfatizar o caráter objetivo, material, não teleológico da bioquímica, em disciplinas oferecidas desde a graduação


Sujet(s)
Humains , Religion , Biochimie , Comportement verbal
18.
Ciênc. cogn ; 17(2): 76-97, jul. 2012. ilus, tab
Article de Portugais | LILACS, Index Psychologie - Revues | ID: lil-677991

RÉSUMÉ

A partir do estudo da epistemologia de Bachelard na disciplina Lógica e Filosofia da Ciência da Pós-Graduação em Bioquímica do Instituto de Química/Universidade Federal do Rio de Janeiro (IQ/UFRJ), buscou-se identificar obstáculos epistemológicos entre pós-graduandos em bioquímica e áreas correlatas. Um questionário com perguntas e excertos de artigos científicos de revistas de alto fator de impacto foi respondido, anonimamente, por pós-graduandos de diferentes cursos da UFRJ e de outras universidades, que nunca cursaram disciplina relacionada à epistemologia. Foi possível identificar concepções vitalistas (animismo) tanto nas respostas às perguntas como na aceitação ou não identificação deste obstáculo nos excertos. O obstáculo pragmático e unitário foi identificado através de uma concepção teleológica dos processos evolutivos, em afirmações como a existência de objetivos/finalidades na adaptação dos organismos. Verificou-se a presença de figuras de linguagem, metáforas e analogias (obstáculo verbal) na explicação da evolução e do sistema imune, também encontradas nos excertos dos artigos. Foram também identificados obstáculos associados à observação primeira e generalização prematura. A partir deste diagnóstico verificou-se a necessidade de enfatizar o caráter objetivo, material, não teleológico da bioquímica, em disciplinas oferecidas desde a graduação.


Sujet(s)
Humains , Religion , Biochimie , Comportement verbal
19.
Enzyme Res ; 2011: 316939, 2011.
Article de Anglais | MEDLINE | ID: mdl-21760993

RÉSUMÉ

In this work, the lipase from Pyrococcus furiosus encoded by ORF PF2001 was expressed with a fusion protein (thioredoxin) in Escherichia coli. The purified enzymes with the thioredoxin tag (TRX-PF2001Δ60) and without the thioredoxin tag (PF2001Δ60) were characterized, and various influences of Triton X-100 were determined. The optimal temperature for both enzymes was 80°C. Although the thioredoxin presence did not influence the optimum temperature, the TRX-PF2001Δ60 presented specific activity twice lower than the enzyme PF2001Δ60. The enzyme PF2001Δ60 was assayed using MUF-acetate, MUF-heptanoate, and MUF-palmitate. MUF-heptanoate was the preferred substrate of this enzyme. The chelators EDTA and EGTA increased the enzyme activity by 97 and 70%, respectively. The surfactant Triton X-100 reduced the enzyme activity by 50% and lowered the optimum temperature to 60°C. However, the thermostability of the enzyme PF2001Δ60 was enhanced with Triton X-100.

20.
Vaccine ; 29(41): 7136-43, 2011 Sep 22.
Article de Anglais | MEDLINE | ID: mdl-21651937

RÉSUMÉ

Infections caused by Streptococcus pneumoniae are one of the main causes of death around the world. In order to address this problem, investigations are being made into the development of a protein-based vaccine. The aims of this study were to clone and express ClpP, a protein from S. pneumoniae serotype 14 in Escherichia coli, to optimize protein expression by using experimental design and to study plasmid segregation in the system. ClpP was cloned into the pET28b vector and expressed in E. coli BL21 Star (DE3). Protein expression was optimized by using central composite design, varying the inducer (IPTG) and kanamycin concentration, with a subsequent analysis being made of the concentration of heterologous protein, cell growth and the fraction of plasmid-bearing cells. In all the experiments, approximately the same concentration of ClpP was expressed in its soluble form, with a mean of 240.4mg/L at the center point. Neither the IPTG concentration nor the kanamycin concentration was found to have any statistically significant influence on protein expression. Also, higher IPTG concentrations were found to have a negative effect on cell growth and plasmid stability. Plasmid segregation was identified in the system under all the concentrations studied. Using statistical analysis, it was possible to ascertain that the procedures for determining plasmid stability (serial dilution and colony counting) were reproducible. It was concluded that the inducer concentration could be reduced tenfold and the antibiotic eliminated from the system without significantly affecting expression levels and with the positive effect of reducing costs.


Sujet(s)
Protéines bactériennes/biosynthèse , Escherichia coli/croissance et développement , Expression des gènes , Instabilité du génome , Isopropyl-1-thio-bêta-D-galactopyranoside/métabolisme , Kanamycine/pharmacologie , Serine endopeptidases/biosynthèse , Activation de la transcription/effets des médicaments et des substances chimiques , Antibactériens/pharmacologie , Protéines bactériennes/génétique , Clonage moléculaire , Endopeptidase Clp , Escherichia coli/génétique , Vecteurs génétiques , Humains , Plasmides , Protéines recombinantes/biosynthèse , Protéines recombinantes/génétique , Sélection génétique , Serine endopeptidases/génétique , Streptococcus pneumoniae/enzymologie , Streptococcus pneumoniae/génétique
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