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1.
BMC Genomics ; 17(1): 920, 2016 11 15.
Article de Anglais | MEDLINE | ID: mdl-27846799

RÉSUMÉ

BACKGROUND: Yeast-to-hypha transition is a major morphological change in fungi. Molecular regulators and pathways that are involved in this process have been extensively studied in model species, including Saccharomyces cerevisiae. The Mitogen-Actived Protein Kinase (MAPK) cascade, for example, is known to be involved in the yeast-to-pseudohypha switch. Yet the conservation of mechanisms regulating such morphological changes in non-model fungi is still poorly understood. Here, we investigate cell remodeling and transcriptomic modifications that occur during this morphological switch in the highly aggressive ascomycete fungus Ophiostoma novo-ulmi, the causal agent of Dutch elm disease. RESULTS: Using a combination of light microscopy, scanning electron microscopy and flow cytometry, we demonstrate that the morphological switch occurs in less than 27 h, with phenotypic cell modifications being detected within the first 4 h. Using RNAseq, we found that over 22% of the genome of O. novo-ulmi is differentially expressed during the transition. By performing clustering analyses of time series gene expression data, we identified several sets of genes that are differentially expressed according to distinct and representative temporal profiles. Further, we found that several genes that are homologous to S. cerevisiae MAPK genes are regulated during the yeast-to-hypha transition in O. novo-ulmi and mostly over-expressed, suggesting convergence in gene expression regulation. CONCLUSIONS: Our results are the first report of a time-course experiment monitoring the morphological transition in a non-model Sordariomycota species and reveal many genes of interest for further functional investigations of fungal dimorphism.


Sujet(s)
Hyphae , Ophiostoma/cytologie , Ophiostoma/physiologie , Transcriptome , AMP cyclique/métabolisme , Cyclic AMP-Dependent Protein Kinases/métabolisme , Analyse de profil d'expression de gènes , Régulation de l'expression des gènes fongiques , Études d'associations génétiques , Mitogen-Activated Protein Kinases/métabolisme , Saccharomyces cerevisiae/cytologie , Saccharomyces cerevisiae/physiologie , Transduction du signal
2.
Sci Rep ; 6: 21934, 2016 Feb 23.
Article de Anglais | MEDLINE | ID: mdl-26902398

RÉSUMÉ

Dutch elm disease (DED), caused by three fungal species in the genus Ophiostoma, is the most devastating disease of both native European and North American elm trees. Although many tolerant cultivars have been identified and released, the tolerance mechanisms are not well understood and true resistance has not yet been achieved. Here we show that the expression of disease-responsive genes in reactions leading to tolerance or susceptibility is significantly differentiated within the first 144 hours post-inoculation (hpi). Analysis of the levels of endogenous plant defense molecules such as jasmonic acid (JA) and salicylic acid (SA) in tolerant and susceptible American elm saplings suggested SA and methyl-jasmonate as potential defense response elicitors, which was further confirmed by field observations. However, the tolerant phenotype can be best characterized by a concurrent induction of JA and disease-responsive genes at 96 hpi. Molecular investigations indicated that the expression of fungal genes (i.e. cerato ulmin) was also modulated by endogenous SA and JA and this response was unique among aggressive and non-aggressive fungal strains. The present study not only provides better understanding of tolerance mechanisms to DED, but also represents a first, verified template for examining simultaneous transcriptomic changes during American elm-fungus interactions.


Sujet(s)
Cyclopentanes/métabolisme , Protéines fongiques/génétique , Ophiostoma/génétique , Oxylipines/métabolisme , Maladies des plantes/génétique , Protéines végétales/génétique , Ulmus/génétique , Acétates/immunologie , Acétates/métabolisme , Cyclopentanes/immunologie , Prédisposition aux maladies , Protéines fongiques/métabolisme , Régulation de l'expression des gènes fongiques , Régulation de l'expression des gènes végétaux , Interactions hôte-pathogène , Tolérance immunitaire , Annotation de séquence moléculaire , Ophiostoma/croissance et développement , Ophiostoma/pathogénicité , Oxylipines/immunologie , Phénotype , Maladies des plantes/immunologie , Maladies des plantes/microbiologie , Protéines végétales/immunologie , Acide salicylique/immunologie , Acide salicylique/métabolisme , Facteurs temps , Ulmus/immunologie , Ulmus/microbiologie , Virulence
3.
Mol Ecol ; 18(21): 4422-33, 2009 Nov.
Article de Anglais | MEDLINE | ID: mdl-19804376

RÉSUMÉ

The basidiomycetous fungus Onnia tomentosa is one of the most widespread root rot pathogens in North America. Although the disease is more severe on spruce and pine trees, this pathogen can infect several coniferous species. To study the population structure of O. tomentosa, we harvested 180 basidiocarps in a 45-year-old white spruce plantation in western Quebec in autumn 1997 and extracted DNA directly from individual basidiocarps. Using a combination of spatial coordinates and molecular data based on the analysis of two mitochondrial and three nuclear loci, we measured the average genet size and molecular diversity and assessed the relative contribution of basidiospores and vegetative growth to the stand colonization. Most of the sampled basidiocarps that clustered spatially belonged to the same genet. A total of 37 discrete multilocus genets of an average size of 3.42 m were obtained. The genet size distribution was skewed towards smaller genets (<3 m) that displayed higher diversity than the larger genets (>3 m). The nuclear loci were in Hardy-Weinberg equilibrium in the larger genets, but not in the smaller genets, which displayed a deficiency of heterozygotes. This suggests a Wahlund effect, whereby different colonization events resulted in expected heterozygosity higher than observed heterozygosity. Using an estimate of the growth rate of the fungus, only a few of the largest genets were approximately the age of the plantation. These observations are consistent with the colonization by basidiospores subsequent to site preparation and tree planting followed by secondary colonization events and vegetative spread.


Sujet(s)
Basidiomycota/génétique , Génétique des populations , Picea/microbiologie , Allèles , Basidiomycota/croissance et développement , Noyau de la cellule/génétique , ADN fongique/génétique , ADN mitochondrial/génétique , Fréquence d'allèle , Marqueurs génétiques , Maladies des plantes/microbiologie , Polymorphisme de conformation simple brin , Québec , Analyse de séquence d'ADN , Arbres/microbiologie
4.
Plant Dis ; 93(12): 1352, 2009 Dec.
Article de Anglais | MEDLINE | ID: mdl-30759531

RÉSUMÉ

Shoots affected by powdery mildew were collected from Siberian pea trees in July 2009 on the University of Wisconsin-Madison campus and on the campus of Université Laval, Quebec City, Quebec. This exotic shrub or small tree is infrequently planted in Wisconsin and three shrubs in a group that were affected are the only examples known on the UW-Madison campus. In Quebec City, Siberian pea tree is more commonly used as an ornamental, often in hedges (as is the case of the affected plants on the Université Laval campus). In both locations, <10% of foliage was visibly affected, but incidence was greater on shoots closer to the ground than on higher shoots. White-to-grayish mycelium was present on leaves and young stems and sometimes completely covered both upper and lower leaf surfaces. Dark brown-to-black chasmothecia were numerous on leaf blades, petioles, and young stems, but were most abundant on lower surfaces of leaves. Morphology of chasmothecia, including appendages with distinctive terminal dichotomous branching, (1) was consistent with descriptions and illustrations of the fungus Erysiphe palczewskii Jacz. (synonym Microsphaera palczewskii) (1-4) thought to be native to Asia, but also known as an invader of Europe where it occurs on the same host. For a sample from Université Laval, mean diameter of chasmothecia was 113 µm, mean appendage length was 185 µm, and barrel-shaped conidia that lacked fibrosin bodies averaged 30 × 14 µm. Asci contained oval, yellow ascospores with mean dimensions of 20 × 12 µm. DNA was extracted from chasmothecia, and nuclear rDNA sequences (633 nucleotides) of the Wisconsin (GenBank Accession No. GQ497277) and Quebec (GenBank Accession No. GQ497276) specimens differed by only one nucleotide. The sequences that were obtained most closely matched GenBank sequences for Oidium spp. (98%) and Erysiphe spp. (97%). Further observations indicated that the same pathogen affected Siberian pea trees planted as ornamentals at several locations separated by ≥15 km in the metropolitan Quebec area. This report extends the eastern known limit of E. palczewskii in the United States, previously known from collections in Alaska (2), Washington (4), Idaho (4), North Dakota (3), and Minnesota (3). To our knowledge, this is the first report of this disease in Canada, and it indicates that the distribution of E. palczewskii is transcontinental. Specimens from Madison, WI and Quebec, QC have been deposited in the U.S. National Fungus Collections (BPI 879152) and the Rene Pomerleau Herbarium of the Canadian Forest Service Laurentian Forestry Centre (QFB-22601). References: (1) U. Braun. Beih. Nova Hedwigia 89:1, 1987. (2) D. A. Glawe and G. A. Laursen. Online publication. doi:10:1094/PHP-2005-1017-01-BR. Plant Health Progress, 2005. (3) D. A. Glawe et al. Online publication. doi:10.1094/PHP-2006-0117-01-BR. Plant Health Progress, 2006. (4) C. Nischwitz and G. Newcombe. Plant Dis. 87:451, 2003.

5.
Geobiology ; 6(5): 461-70, 2008 Dec.
Article de Anglais | MEDLINE | ID: mdl-19076637

RÉSUMÉ

In this work, we experimentally evaluate pH and SO4(2-) dynamics associated with abiotic and microbial S2O3(2-) oxidation under varying [O2], [Fe(III)] and microbial strain/consortia (two pure strains, Acidithiobacillus ferrooxidans, Acidithiobacillus thiooxidans, their consortia, and two enrichments from an acidic environmental system, Moose Lake 2002 and Moose Lake 2003). Results of the batch experiments demonstrate highly active microbial processing of S2O3(2-) while abiotic controls under identical experimental conditions remain static with no pH decrease. When abiotic controls were manually titrated with acid to achieve similar pH decreases to those occurring in the microbial treatments, different S pathways were involved. In particular, disproportionation is a substantial component of initial microbial S2O3(2-) processing, and is accelerated by the presence of Fe(III), indicating that recycling of S through intermediate oxidation states is likely to be widespread in acidic mine environments where high [Fe(III)] is common. Furthermore, the microbially mediated S reaction pathways were dependent on both environmental conditions and microbial strain/consortia, indicating that microbial community structure also plays a key role. Collectively, these results highlight the importance of microbial activity, their poor representation by abiotic S models, the likelihood that Fe(III), rather than O2, is a key control on microbial S processing in acid environments and the need to identify the microbial community/strain involved.


Sujet(s)
Acidithiobacillus/métabolisme , Thiosulfates/métabolisme , Microbiologie de l'eau , Composés du fer III/métabolisme , Concentration en ions d'hydrogène , Oxydoréduction , Oxygène/métabolisme
6.
J Med Genet ; 45(12): 780-6, 2008 Dec.
Article de Anglais | MEDLINE | ID: mdl-18708425

RÉSUMÉ

BACKGROUND: Our discovery in 2003 of the first mutations of PCSK9 gene causing autosomal dominant hypercholesterolaemia (ADH) shed light on an unknown factor that strongly influences the level of circulating low density lipoprotein cholesterol (LDL-C). PCSK9 gain of function mutations cause hypercholesterolaemia by a reduction of LDL receptor levels, while PCSK9 loss of function variants are associated with a reduction of LDL-C values and a decreased risk of coronary heart disease. METHODS AND RESULTS: We report an insertion of two leucines (p.L21tri also designated p.L15_L16ins2L) in the leucine stretch of the signal peptide of PCSK9 that is found in two of 25 families with familial combined hyperlipidaemia (FCHL). This mutant is associated with high total cholesterol and LDL-C values in these families and is found also in a patient with familial hypercholesterolaemia and her father. CONCLUSION: PCSK9 variants might contribute to FCHL phenotype and are to be taken into consideration in the study of this complex and multigenic disease with other genes implicated in dyslipidaemia.


Sujet(s)
Variation génétique , Hyperlipidémie familiale mixte/génétique , Serine endopeptidases/génétique , Adulte , Séquence nucléotidique , Femelle , Humains , Leucine/génétique , Leucine/métabolisme , Données de séquences moléculaires , Mutation , Phénotype , Proprotéine convertase 9 , Proprotein convertases , Récepteurs aux lipoprotéines LDL/génétique
7.
Microb Ecol ; 54(4): 672-84, 2007 Nov.
Article de Anglais | MEDLINE | ID: mdl-17347891

RÉSUMÉ

Fungal diversity in the rhizosphere of healthy and diseased clonal black spruce (Picea mariana) plants was analyzed with regard to nursery production chronosequences. The four key production stages were sampled: mother plants (MP), 8-week-old cuttings (B + 0), second-year cuttings (B + 1), and third-year cuttings (B + 2). A total of 45 fungal taxa were isolated and identified based on cultural, phenotypic, and molecular characters. Members of phylum Ascomycota dominated, followed by Basidiomycota and Zygomycota. Diagnosis characters and distance analysis of the internal transcribed spacer rDNA sequences allowed the identification of 39 ascomycetous taxa. Many belong to the order Hypocreales, families Hypocreaceae and Nectriaceae, which contain many clusters of potentially pathogenic taxa (Cylindrocladium, Fusarium, and Neonectria) and are also ecologically associated with antagonistic taxa (Chaetomium, Hypocrea, Microsphaeropsis, Penicillium, Paecilomyces, Verticillium, Trichoderma, and Sporothrix). This is also the first report of a Cylindrocladium canadense association with disease symptoms and relation with Pestalotiopsis, Fusarium, Exserochilum, Rhizoctonia, and Xenochalara fungal consortia. Both production chronosequence and plant health considerably influenced fungal taxa assemblages. Unweighted pair-group arithmetic average clustering showed that isolates from MP, B + 0, and B + 1 plant rhizospheres clustered together within healthy or diseased health classes, whereas isolates from healthy and diseased B + 2 plants clustered together. Canonical correspondence analysis revealed substantial alteration in community assemblages with regard to plant health and yielded a principal axis direction that regrouped taxa associated with diseased plant rhizosphere soil, whereas the opposite axis direction was associated with healthy plants. Two diversity indices were defined and applied to assess the fungal taxa contribution (Tc) and persistence (Pi) throughout the production.


Sujet(s)
Écosystème , Champignons/classification , Champignons/génétique , Picea/microbiologie , Racines de plante/microbiologie , Microbiologie du sol , Ascomycota/classification , Ascomycota/génétique , Ascomycota/isolement et purification , ADN fongique/analyse , Espaceur de l'ADN ribosomique/analyse , Champignons/isolement et purification , Données de séquences moléculaires , Phylogenèse , Picea/croissance et développement , Maladies des plantes/microbiologie , Analyse de séquence d'ADN
8.
Phytopathology ; 97(5): 603-10, 2007 May.
Article de Anglais | MEDLINE | ID: mdl-18943580

RÉSUMÉ

ABSTRACT Poplar leaf rust caused by Melampsora medusae f. sp. deltoidae is a widespread disease in North America, where epidemics occur within zones of sympatry and allopatry of telial hosts (Populus spp.) and aecial hosts (Larix spp.). To test the hypothesis that epidemics originate in the zone of sympatry where the rust can complete its life cycle, populations in sympatry and allopatry were analyzed with single-strand conformational polymorphism for codominant detection of alleles directly from uredinia. More alleles were detected in rust populations in the zone of host sympatry than in allopatry. Almost all alleles found in the zone of allopatry were a subset of the allelic diversity present in the zone of host sympatry. Distance analyses clustered populations according to geographic origin, but not sampling year or type of stand (plantation or natural stands). Large differences in allelic and genotypic frequency were observed between years in allopatry but not in sympatry, suggesting new colonizations in allopatric populations. Our results point to a dynamic and complex pattern of inoculum dissemination in polar leaf rust. The hypothesis most consistent with our results is that populations in sympatry represent a source of inoculum for epidemics, with some annual recolonization in allopatry, possibly via intermediate population jumps.

9.
Can J Microbiol ; 52(6): 501-7, 2006 Jun.
Article de Anglais | MEDLINE | ID: mdl-16788717

RÉSUMÉ

We characterized a spontaneous albino mutant of Ceratocystis resinifera. Compared with the wild-type progenitor strain, the albino mutant had a reduced linear growth on culture medium, but its growth on lodgepole pine sapwood was unaffected. The albino mutant did not produce any coloured pigment on agar media or wood. However, upon exposure to exogenous scytalone, an intermediate metabolite of the melanin pathway, the production of a brownish melanin was restored. This suggests that the albino phenotype resulted from a mutation affecting the melanin synthesis pathway, upstream of the scytalone synthesis step. Melanin production was restored in the mutant by transforming it with a wild-type copy of the Ceratocystis resinifera polyketide synthase gene, PKS1. The complemented transformants produced melanin, indicating that the PKS1 gene was defective in the albino mutant. Sequence analysis revealed that the PKS1 allele found in the albino contained a single point mutation that resulted in an amino acid change from serine to proline at the 3' end of the beta-ketoacyl synthase motif.


Sujet(s)
Ascomycota/génétique , Mutation ponctuelle/génétique , Polyketide synthases/génétique , Séquence d'acides aminés , Ascomycota/enzymologie , Ascomycota/métabolisme , Séquence nucléotidique , Technique de Southern , ADN fongique/composition chimique , ADN fongique/génétique , ADN fongique/métabolisme , Type II site-specific deoxyribonuclease/métabolisme , Protéines fongiques/génétique , Protéines fongiques/métabolisme , Régulation de l'expression des gènes fongiques/génétique , Test de complémentation , Mélanines/biosynthèse , Mélanines/métabolisme , Données de séquences moléculaires , Complexes multienzymatiques/génétique , Complexes multienzymatiques/métabolisme , Phénotype , Polyketide synthases/métabolisme , Analyse de séquence d'ADN , Similitude de séquences d'acides aminés
10.
J Med Ethics ; 30(6): 527-32, 2004 Dec.
Article de Anglais | MEDLINE | ID: mdl-15574437

RÉSUMÉ

In Canada, the Assisted Human Reproduction Act received royal assent on 29 March 2004. The approach proposed by the federal government responds to Canadians' strong desire for an enforceable legislative framework in the field of reproduction technologies through criminal law. As a result of the widening gap between the rapid pace of technological change and governing legislation, a distinct need was perceived to create a regulatory framework to guide decisions regarding reproductive technologies. In this article the three main topics covered in the new legislation are commented on: cloning, germline therapy, and purchase of gametes and embryos. Some important issues also covered in the new legislation, such as privacy and access to information, data protection, identity of donors, and inspection, will not be addressed.


Sujet(s)
Clonage d'organisme/législation et jurisprudence , Législation médicale , Techniques de reproduction assistée/législation et jurisprudence , Canada , Commerce , Recherche sur l'embryon/législation et jurisprudence , Ingénierie humaine/législation et jurisprudence , Femelle , Cellules germinales , Réglementation gouvernementale , Humains , Mâle , Donneurs de tissus
11.
Appl Environ Microbiol ; 70(6): 3541-51, 2004 Jun.
Article de Anglais | MEDLINE | ID: mdl-15184155

RÉSUMÉ

Bacterial and fungal populations associated with the rhizosphere of healthy black spruce (Picea mariana) seedlings and seedlings with symptoms of root rot were characterized by cloned rRNA gene sequence analysis. Triplicate bacterial and fungal rRNA gene libraries were constructed, and 600 clones were analyzed by amplified ribosomal DNA restriction analysis and grouped into operational taxonomical units (OTUs). A total of 84 different bacterial and 31 different fungal OTUs were obtained and sequenced. Phylogenetic analyses indicated that the different OTUs belonged to a wide range of bacterial and fungal taxa. For both groups, pairwise comparisons revealed that there was greater similarity between replicate libraries from each treatment than between libraries from different treatments. Significant differences between pooled triplicate samples from libraries of genes from healthy seedlings and pooled triplicate samples from libraries of genes from diseased seedlings were also obtained for both bacteria and fungi, clearly indicating that the rhizosphere-associated bacterial and fungal communities of healthy and diseased P. mariana seedlings were different. The communities associated with healthy and diseased seedlings also showed distinct ecological parameters as indicated by the calculated diversity, dominance, and evenness indices. Among the main differences observed at the community level, there was a higher proportion of Acidobacteria, Gammaproteobacteria, and Homobasidiomycetes clones associated with healthy seedlings, while the diseased-seedling rhizosphere harbored a higher proportion of Actinobacteria, Sordariomycetes, and environmental clones. The methodological approach described in this study appears promising for targeting potential rhizosphere-competent biological control agents against root rot diseases occurring in conifer nurseries.


Sujet(s)
Bactéries/classification , Champignons/classification , Picea/microbiologie , Maladies des plantes/microbiologie , Racines de plante/microbiologie , Microbiologie du sol , Bactéries/génétique , Bactéries/isolement et purification , Écosystème , Champignons/génétique , Champignons/isolement et purification , Gènes d'ARN ribosomique , Données de séquences moléculaires , Phylogenèse , Cartographie de restriction , Plant/croissance et développement , Analyse de séquence d'ADN
12.
Plant Dis ; 88(7): 770, 2004 Jul.
Article de Anglais | MEDLINE | ID: mdl-30812495

RÉSUMÉ

During the summer of 2001, leaf spots resembling those caused by Septoria musiva Peck. were observed on shining willow (Salix lucida Mühl. subsp. lucida) at Leclerville, Québec, Canada (46°34'19″N,71°59'35″W). Affected leaves had brown, necrotic leaf spots (>5mm in diameter) surrounded by a darker brown halo. Conidia were cylindrical, straight to curved with 1 to 4 septa, 28 to 54 × 3.5 to 4 µm, and were produced in pycnidia located on the abaxial surface in the center of the leaf spots. The causal agent of this disease was successfully isolated by germinating the conidia on corn meal agar that was supplemented with streptomycin (50mg/ml) and chloramphenicol (300mg/ml) and followed with the transfer of the germinated conidia to potato dextrose agar. Leaf symptoms and morphology matched those of S. musiva, the cause of leaf spot and stem canker of hybrid poplars in North America (2,4). The internal transcribed spacers and the 5.8S portion of the rDNA were amplified using PCR with the ITS1 (5'-TCC GTA GGT GAA CCT GCG G-3') and ITS2 (5'-GCT GCG TTC TTC ATC GAT GC-3') primer pair on total genomic DNA extracted from a pure culture of the pathogen. The rDNA sequence obtained (GenBank Accession No. AY555277) had 100% identity at 506 base positions with the ITS1, 5.8S, and ITS2 of three S. musiva isolates from Québec and one from Wisconsin (GenBank Accession Nos. AY549464 to AY549467). To test for pathogenicity, excised leaf disks from plants propagated by softwood cuttings of the source plant and from one hybrid poplar clone (Populus maximowiczii × P. xjackii) were inoculated with 3 µl of a suspension of ground mycelium or sterile water (control). Disks were placed in a 24-well tissue culture plate with 1 ml of distilled water per well and incubated in a growth room maintained at 22°C with a 16-h photoperiod. After 1 month, symptoms were similar to those previously observed. Isolates collected from shining willow or hybrid poplar were able to induce S. musiva leaf spot symptoms on leaf disks excised from shining willow or the hybrid poplar clone. From symptomatic leaf disks, S. musiva was consistently reisolated. To our knowledge, this is the first report of S. musiva on a member of the genus Salix. S. didyma, S. salicicola, and S. salicina have been reported from leaves of species of Salix (1,3). Only a vague morphological description of S. didyma was found (3). Moreover, conidia of S. salicicola (20 to 50 × 2.5 to 3.5 µm) and S. salicina (40 to 60 µm long, unspecified width) overlap dimensions of S. musiva conidia (1). There is a need to reexamine the relationships between these species of Septoria. Evidently, the complete host range of S. musiva is not yet known. References: (1) L. Lanier et al. Mycologie et Pathologie Forestières. Masson. Paris, 1978. (2) M. E. Ostry. Eur. J. For. Pathol. 17:158, 1987. (3) P. A. Saccardo. Sylloge fungurum omnium hucusque cognitorum. Patavii: Sumptibus Auctoris, 1882. (4) L. J. Spielman et al. Plant Dis. 70:968, 1986.

13.
Mol Genet Genomics ; 269(6): 789-96, 2003 Sep.
Article de Anglais | MEDLINE | ID: mdl-14513363

RÉSUMÉ

Cerato-ulmin is a surface protein that belongs to the class of fungal proteins known as hydrophobins. This class II hydrophobin is produced throughout the life cycle and in all developmental stages of Ophiostoma novo-ulmi and O. ulmi; the aggressive and non-aggressive pathogens responsible for Dutch elm disease. Since yeast/mycelial transitions are often important to pathogenesis in dimorphic fungi such as Ophiostoma, we have examined the levels and abundance of cu mRNA in the yeast and mycelial stages of this fungus. The fungus contains one copy of the cu gene per haploid genome, located on chromosome IV. Our studies have been done using phosphoimager-based Northern analysis and real-time quantitative RT-PCR (qRT-PCR) to measure levels of cu mRNA. These measurements were made in both yeast-like and mycelial stages of the pathogen. Two wild-type, aggressive, strains of O. novo-ulmi (VA30 and H327) and one wild type non-aggressive strain of O. ulmi (H5) were analysed. As controls, we have utilized two types of mutants that we had previously generated, the null cu mutants THEK5-8 and THEK5-8-1, and a cu over-expression mutant, H5-tf16. Data generated by both Northern hybridization and real-time qRT-PCR analyses demonstrate that there is no cu mRNA transcription in the null mutants. The Northern analysis clearly showed that the over-expressing mutant H5-tf16 produces much more cu mRNA than the non-aggressive or aggressive strains. The quantitative data generated using qRT-PCR demonstrated that mycelium generally had 20-60% more cu mRNA than the yeast form. The non-aggressive strain of O. ulmi (H5) produces one-tenth as much cu mRNA as the aggressive strains (VA30 and H327). When transformed with additional copies of the cu gene, this same non-aggressive strain (H5-tf16) expressed about 20 times more cu mRNA than the wild type H5 strain. These data were consistently generated in multiple real-time qRT-PCR experiments with different RNA preparations, clearly demonstrating that the quantitative abundance values obtained were reproducible. Our study represents the first report on the use of real-time qRT-PCR to compare and quantify gene transcription in different growth phases of a fungal pathogen.


Sujet(s)
Protéines fongiques/métabolisme , Champignons/pathogénicité , Mycotoxines/métabolisme , Transcription génétique , Xylariales/métabolisme , Xylariales/pathogénicité , Technique de Northern , Amorces ADN , Protéines fongiques/génétique , Champignons/physiologie , Mycelium/génétique , Mycelium/métabolisme , Mycotoxines/génétique , ARN fongique/génétique , ARN fongique/métabolisme , RT-PCR , Xylariales/génétique
14.
Microb Ecol ; 44(1): 39-48, 2002 Jul.
Article de Anglais | MEDLINE | ID: mdl-12019460

RÉSUMÉ

Maize root colonization and phosphate solubilizing activity of the fungus Penicillium rugulosum were assessed in a greenhouse trial using soil-plant microcosms. The bacterial gene hph conferring resistance to hygromicin B was introduced by electroporation in the wild-type strain IR-94MF1 of P. rugulosum and one transformant, w-T3, was selected. Maize plants were grown for 5 weeks in a P-poor soil and fertilized with a Florida apatite mineral, with Navay, an apatite rock deposit from Venezuela, or with simple superphosphate. Inoculation treatments included strain IR-94MF1, transformant w-T3 and two IR-94MF1 UV-induced mutants with enhanced (Mps++) or reduced (Mps-) in vitro mineral phosphate solubilizing activity. In the absence of P fertilization, inoculation with any P. rugulosum isolate significantly reduced the size of the total and P-solubilizing bacterial community present in maize rhizosphere. The bacterial community significantly increased in maize inoculated with IR-94MF1 and w-T3 when P was added as apatites Navay or Florida. All P. rugulosum strains were able to stimulate the growth of maize plants as indicated by 3.6 to 28.6% increases in dry matter yields. In the presence of rock phosphate, P uptake by maize plants inoculated with the two mutants Mps++ and Mps- was not always in agreement with their P-solubilizing phenotypes. Strain IR-94MF1 and transformant w-T3 increased P assimilation by the plants fertilized with Navay rock phosphate by 26 and 38%, respectively. In this treatment, w-T3 showed its highest significant maize rhizosphere colonization. With the simple superphosphate treatment, w-T3 increased P uptake in plants by 8% over the uninoculated control and also decreased significantly the community size of total bacteria, total fungi, and P-solubilizing fungi in the rhizosphere.


Sujet(s)
Génie génétique , Sédiments géologiques/composition chimique , Penicillium/génétique , Penicillium/métabolisme , Phosphates/métabolisme , Zea mays/microbiologie , Transport biologique , Numération de colonies microbiennes , Électroporation , Hygromycine/pharmacologie , Mitose , Mutation/génétique , Penicillium/enzymologie , Phosphotransferases (Alcohol Group Acceptor)/génétique , Racines de plante/cytologie , Racines de plante/microbiologie , Microbiologie du sol , Solubilité , Zea mays/cytologie
15.
Mol Genet Genomics ; 266(1): 96-102, 2001 Sep.
Article de Anglais | MEDLINE | ID: mdl-11589582

RÉSUMÉ

A reliable DNA-mediated transformation system has been developed for Pseudozyma flocculosa, a fungus that is antagonistic to powdery-mildew fungi. Plasmids harboring various selectable markers under the control of different promoters were tested. Molecular analyses demonstrated that successful transformation could be achieved using a plasmid that confers resistance to hygromycin B under the control of the Ustilago maydis hsp70 promoter and terminator sequences. On average, 1-40 (mean = 20) transformants were obtained per 10 microg of linearized DNA per 10(8) protoplasts. Southern analysis of the transformants revealed that, in each case, the vector had integrated in multiple tandem copies into the genome of P. flocculosa, and that integration events were random. Pulsed-field gel electrophoresis was employed to separate the genome of P. flocculosa into at least 11 chromosomes with sizes ranging from 0.55 Mb to 2.9 Mb. Hybridization with the plasmid indicated that integration of vector DNA had occurred in one to several chromosomes depending on the transformant examined.


Sujet(s)
Basidiomycota/génétique , Techniques de transfert de gènes , Séquence nucléotidique , Technique de Southern , Amorces ADN , ADN fongique , Électrophorèse sur gel de polyacrylamide , Plasmides , Réaction de polymérisation en chaîne , Régions promotrices (génétique) , Transformation génétique
16.
Arterioscler Thromb Vasc Biol ; 21(5): 825-31, 2001 May.
Article de Anglais | MEDLINE | ID: mdl-11348881

RÉSUMÉ

In the present study, we demonstrate gamma-interferon (gamma-IFN)-inducible scavenger receptor A (SR-A) mRNA expression during the early stages of THP-1 and blood monocyte differentiation. Predominant induction of SR-A type II mRNA parallels the increased accumulation of cholesteryl esters under these conditions. A potential signal transducer and activator of transcription (STAT1) binding site (gamma-interferon activation site) in the SR-A promoter demonstrates gamma-IFN-inducible DNA binding activity and is most likely responsible for the gamma-IFN-dependent expression of an SR-A promoter-luciferase fusion construct. In contrast, gamma-IFN inhibits SR-A expression in mature macrophages as well as after prolonged gamma-IFN incubation of THP-1 monocytes. Taken together, these results demonstrate opposite effects of gamma-IFN on SR-A expression and activity during the early versus late stages of monocyte maturation. gamma-IFN-induced STAT1 activation, leading to increased SR-A expression, could therefore play an important role in the initial steps of foam cell formation and xanthomatosis.


Sujet(s)
Interféron gamma/pharmacologie , Monocytes/métabolisme , Régions promotrices (génétique) , Récepteurs immunologiques/génétique , Adulte , Différenciation cellulaire , Lignée cellulaire , Protéines de liaison à l'ADN/métabolisme , Femelle , Gènes , Humains , Macrophages/métabolisme , Mâle , Adulte d'âge moyen , Monocytes/effets des médicaments et des substances chimiques , Isoformes de protéines/biosynthèse , Isoformes de protéines/génétique , ARN messager/biosynthèse , Récepteurs immunologiques/biosynthèse , Récepteurs immunologiques/métabolisme , Récepteurs éboueurs , Éléments de réponse , Facteur de transcription STAT-1 , Récepteurs éboueurs de classe A , Transactivateurs/métabolisme
17.
Cancer Chemother Pharmacol ; 47(3): 236-40, 2001 Mar.
Article de Anglais | MEDLINE | ID: mdl-11320667

RÉSUMÉ

PURPOSE: Troxacitabine (beta-L-dioxolane cytidine, BCH-4556; Troxatyl, BioChem Pharma Inc.) is a novel nucleoside analogue, which in experiments demonstrated potent antitumor activity against both leukemias and solid tumors. Since troxacitabine is a cytidine nucleoside analogue like AraC (1-beta-D-arabinofuranosylcytosine), which is currently used in the treatment of acute myelogenous leukemia, we compared the in vivo antileukemic activity of troxacitabine with that of AraC in human leukemia xenograft models. METHODS: The antiproliferative activity of troxacitabine and AraC was analyzed on hemapoietic cell lines by use of a thymidine incorporation assay. For in vivo studies, we compared troxacitabine with AraC by using equitotoxic schedules of the two nucleosides optimized for therapeutic activity. The antileukemic activity of both drugs was evaluated by measurement of their effect on the percent increased lifespan. RESULTS: AraC had good in vitro antiproliferative activity (IC50 = 14 nM) but was ineffective in vivo against the HL60 promyelocyte leukemia cell line (treated vs control, T/C = 105%). Troxacitabine, which in contrast to AraC is not a substrate for cytidine deaminase, showed potent in vitro and in vivo activity in the same model (IC50 = 53 nM and T/C = 272% to 422%). The poor in vivo activity of AraC against HL60 leukemia cells could be due to the high cytidine deaminase (CDA; EC 3.5.4.5) activity in this cell line. This hypothesis was tested with CCRF-CEM T-lymphoblastoid leukemia cells which have undetectable levels of CDA activity. Short-term exposure of these leukemia cell lines to both drugs indicated that AraC was indeed significantly more effective in the CCRF-CEM cell line than in HL60. In contrast, the antiproliferative activity of troxacitabine was similar for both cell lines. These observations were extended to in vivo studies. Mice bearing CCRF-CEM tumor xenografts were treated with AraC and troxacitabine. In this model, T/C values were comparable for both drugs and ranged from 138% to 157%. CONCLUSIONS: Our findings indicate that troxacitabine is likely to be effective not only against solid tumors with high CDA activity but also in leukemias which have developed resistance to AraC due to increased CDA levels; this suggests that troxacitabine is a promising agent for the treatment of cancer. Indeed, significant antileukemic activity has been observed with troxacitabine in a phase I clinical trial in patients with primary refractory or relapsed acute myeloid leukemias (AML).


Sujet(s)
Antinéoplasiques/usage thérapeutique , Cytidine deaminase/métabolisme , Cytosine/analogues et dérivés , Cytosine/usage thérapeutique , Dioxolanes/usage thérapeutique , Leucémie à cellules T/traitement médicamenteux , Animaux , Division cellulaire/effets des médicaments et des substances chimiques , Femelle , Cellules HL-60 , Humains , Leucémie aiguë promyélocytaire/traitement médicamenteux , Leucémie aiguë promyélocytaire/enzymologie , Leucémie à cellules T/enzymologie , Souris , Souris SCID , Transplantation hétérologue , Cellules cancéreuses en culture
18.
Home Healthc Nurse ; 19(10): 632-40; quiz 641, 2001 Oct.
Article de Anglais | MEDLINE | ID: mdl-11982222

RÉSUMÉ

Home care professionals are increasingly required to manage patients with chronic respiratory conditions. Under PPS, an even stronger mandate requires that every intervention be timely, necessary, valuable, cost effective, and lead to positive patient outcomes. This article focuses on the cost benefits, tools, and interventions available that enhance the ability to assess respiratory status "from a distance."


Sujet(s)
Diagnostic infirmier/méthodes , Thérapie respiratoire/méthodes , Maladies de l'appareil respiratoire/diagnostic , Maladies de l'appareil respiratoire/soins infirmiers , Maladie chronique , Soins infirmiers communautaires , Humains , Tests de la fonction respiratoire , Sensibilité et spécificité , Indice de gravité de la maladie
19.
Phytopathology ; 91(4): 369-76, 2001 Apr.
Article de Anglais | MEDLINE | ID: mdl-18943849

RÉSUMÉ

ABSTRACT Genetic diversity was studied in seven Canadian populations of Ophiostoma piceae, the most prevalent sapstain fungus in Canadian softwoods. A total of 239 single-spore isolates were recovered following a systematic survey of sapstain fungi in logs and lumber at seven selected sawmills in six Canadian provinces (British Columbia, Alberta, Saskatchewan, Ontario, Québec, and New Brunswick). Sampling was carried out on five commercially important softwood species: balsam fir (Abies balsamea), white spruce (Picea glauca), black spruce (Picea mariana), jack pine (Pinus banksiana), and lodgepole pine (Pinus con-torta var. latifolia). The A and B mating types occurred at equal frequency (MAT A/ MAT B = 1.00:1.13) over all populations. Pseudo-allelic frequencies were estimated at each of 24 putative genetic loci by scoring for presence or absence of random amplified polymorphic DNA fragments generated by five primers. A total of 237 haplotypes were found among the 239 isolates, revealing a high level of genotypic diversity among isolates. Total gene diversity (H(T) = 0.414) was mostly attributable to diversity within populations (H(S) = 0.369). Thus, only 11.2% of the total variability was attributable to frequency differences among populations. An analysis of molecular variance revealed that most genetic variability occurred within subpopulations within mills (84.3%; P < 0.001), whereas low but statistically significant levels of genetic differentiation were also observed among subpopulations within populations (5.4%; P < 0.001) and among populations (10.3%; P < 0.001). Estimates of Nei' genetic distances were not correlated with geographic distances among sampling locations (r = -0.092; P = 0.310), although principal component analysis indicated that subpopulations located east of Saskatchewan were grouped on the same side of the second principal component axis. Overall, results suggest moderate genetic differentiation of O. piceae in Canada, which is consistent with the observation that sexual reproduction is frequently observed in this fungus.

20.
Arterioscler Thromb Vasc Biol ; 20(12): 2643-50, 2000 Dec.
Article de Anglais | MEDLINE | ID: mdl-11116066

RÉSUMÉ

Oxidized low density lipoproteins (Ox-LDLs) are increasingly thought to be a key element in atherogenesis. We have previously reported that serum albumin has important antioxidant properties and that a reduced synthesis of albumin may represent a crucial point in the overall antioxidant defense. In the present work, we aimed at determining whether Ox-LDL could modulate albumin synthesis in cultured human hepatocytes (HepG2 cells). With the use of enzyme immunoassay and radiolabeled leucine incorporation followed by specific immunoprecipitation, Ox-LDL was found to lead to a dose-dependent decrease in albumin secretion. Moreover, the protein synthesis and mRNA levels were decreased in the presence of Ox-LDL, as assessed by Northern blot analysis. Because oxysterols and lysophospholipids are key components of Ox-LDL, we tested the effects of oxysterols (7-ketocholesterol and 25-hydroxycholesterol) and lysophosphatidylcholine on albumin secretion and expression. In our experimental conditions, we found that incubations with oxysterols or lysophosphatidylcholine at pathophysiological concentrations similar to those measured in Ox-LDLs reproduced the above-mentioned inhibitory effects on albumin synthesis. On the basis of our in vitro data, we propose that this newly described biological effect of Ox-LDL might partly explain the findings of epidemiological studies indicating that reduced levels of serum albumin are associated with increased mortality.


Sujet(s)
Antioxydants/métabolisme , Lipoprotéines LDL/pharmacologie , Sérumalbumine/métabolisme , Diabète/métabolisme , Relation dose-effet des médicaments , Régulation négative , Régulation de l'expression des gènes/effets des médicaments et des substances chimiques , Humains , Hydroxycholestérols/pharmacologie , Hypercholestérolémie/métabolisme , Cétocholestérols/pharmacologie , Leucine/composition chimique , Foie/métabolisme , Lysolécithine/métabolisme , ARN messager/biosynthèse , Sérumalbumine/biosynthèse , Sérumalbumine/composition chimique , Facteurs temps , Tritium , Cellules cancéreuses en culture
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