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1.
Leukemia ; 32(5): 1147-1156, 2018 05.
Article de Anglais | MEDLINE | ID: mdl-29434279

RÉSUMÉ

Aberrant activation of the JAK3-STAT signaling pathway is a characteristic feature of many hematological malignancies. In particular, hyperactivity of this cascade has been observed in natural killer/T-cell lymphoma (NKTL) cases. Although the first-in-class JAK3 inhibitor tofacitinib blocks JAK3 activity in NKTL both in vitro and in vivo, its clinical utilization in cancer therapy has been limited by the pan-JAK inhibition activity. To improve the therapeutic efficacy of JAK3 inhibition in NKTL, we have developed a highly selective and durable JAK3 inhibitor PRN371 that potently inhibits JAK3 activity over the other JAK family members JAK1, JAK2, and TYK2. PRN371 effectively suppresses NKTL cell proliferation and induces apoptosis through abrogation of the JAK3-STAT signaling. Moreover, the activity of PRN371 has a more durable inhibition on JAK3 compared to tofacitinib in vitro, leading to significant tumor growth inhibition in a NKTL xenograft model harboring JAK3 activating mutation. These findings provide a novel therapeutic approach for the treatment of NKTL.


Sujet(s)
Janus kinase 3/antagonistes et inhibiteurs , Lymphome T/traitement médicamenteux , Pyridones/usage thérapeutique , Pyrimidines/usage thérapeutique , Facteurs de transcription STAT/métabolisme , Transduction du signal , Animaux , Apoptose/effets des médicaments et des substances chimiques , Lignée cellulaire tumorale , Prolifération cellulaire/effets des médicaments et des substances chimiques , Hétérogreffes/effets des médicaments et des substances chimiques , Humains , Janus kinase 3/métabolisme , Souris , Cellules T tueuses naturelles/anatomopathologie , Pyridones/pharmacologie , Pyrimidines/pharmacologie
2.
J Oral Rehabil ; 41(8): 555-63, 2014 Aug.
Article de Anglais | MEDLINE | ID: mdl-24836732

RÉSUMÉ

Patients with temporomandibular muscle and joint disorder (TMJD) increasingly seek and receive treatment for their pain with botulinum toxin (BoNTA; botulinum toxin A). Used intramuscularly in therapeutic doses, it produces localised paresis. Such paresis creates risk of reduced bone mineral density, or 'disuse osteopenia'. Animal studies have frequently used BoNTA as a model of paralysis to induce bone changes within short periods. Osteopenic effects can be enduring in animals but have yet to be studied in humans. This is the first study in humans to examine bone-related consequences of BoNTA injections in the masticatory muscles, comparing oral and maxillofacial radiologists' ratings of trabecular bone patterns in the condyles of patients with TMJD exposed to multiple masticatory muscle injection sessions with BoNTA to a sample of patients with TMJD unexposed to masticatory muscle injections with BoNTA. Cone-beam computed tomography (CBCT)-derived images of bilateral condyles were evaluated in seven patients with TMJD receiving 2+ recent BoNTA treatment sessions for facial pain and nine demographically matched patients with TMJD not receiving BoNTA treatment. Two oral and maxillofacial radiologists evaluated CBCT images for evidence of trabecular changes consistent with osteopenia. Both evaluators noted decreased density in all participants exposed to BoNTA and in none of the unexposed participants (P < 0.001). No other abnormalities associated with reduced loading were detected. These findings need replication in a larger sample and over a longer time period, to ensure safety of patients with TMJD receiving multiple BoNTA injections for their pain.


Sujet(s)
Densité osseuse/effets des médicaments et des substances chimiques , Maladies osseuses métaboliques/induit chimiquement , Maladies osseuses métaboliques/imagerie diagnostique , Toxines botuliniques de type A/effets indésirables , Algie faciale/traitement médicamenteux , Agents neuromusculaires/effets indésirables , Syndrome de l'articulation temporomandibulaire/traitement médicamenteux , Adulte , Toxines botuliniques de type A/administration et posologie , Tomodensitométrie à faisceau conique , Femelle , Humains , Injections musculaires , Condyle mandibulaire/imagerie diagnostique , Condyle mandibulaire/effets des médicaments et des substances chimiques , Muscles masticateurs/physiopathologie , Agents neuromusculaires/administration et posologie , Satisfaction des patients , Projets pilotes , Qualité de vie , Résultat thérapeutique
3.
J Comp Pathol ; 144(4): 277-88, 2011 May.
Article de Anglais | MEDLINE | ID: mdl-21145564

RÉSUMÉ

Bovine spongiform encephalopathy (BSE) is a prion disease of domesticated cattle, first identified in Great Britain (GB) in 1986. The disease has been characterized by histopathological, immunohistochemical, biochemical and biological properties, which have shown a consistent disease phenotype among cases obtained by passive surveillance. With the advent of active surveillance in 2001, immunological tests for detection of the prion protein revealed some cases with different biochemical characteristics and, in certain instances, differences in pathology that have indicated variant phenotypes and the possibility of agent strain variation. This study examines a case set of 523 bovine brains derived from archived material identified through passive surveillance in GB. All cases conformed to the phenotype of classical BSE (BSE-C) by histopathological, immunohistochemical and biochemical approaches. The analyses consolidated an understanding of BSE-C and, by western blotting, confirmed differentiation from the known atypical BSE cases which exhibit higher or lower molecular masses than BSE-C (BSE-H and BSE-L respectively).


Sujet(s)
Encéphale/anatomopathologie , Encéphalopathie spongiforme bovine/anatomopathologie , Protéines PrPSc/métabolisme , Animaux , Biodiversité , Technique de Western/médecine vétérinaire , Encéphale/métabolisme , Bovins , Encéphalopathie spongiforme bovine/métabolisme , Immunohistochimie/médecine vétérinaire , Phénotype , Surveillance de la population/méthodes , Protéines PrPSc/isolement et purification , Royaume-Uni
5.
J Neurol Neurosurg Psychiatry ; 77(10): 1129-35, 2006 Oct.
Article de Anglais | MEDLINE | ID: mdl-16772356

RÉSUMÉ

BACKGROUND: Attentional dysfunction is believed to be a prominent and distinguishing neuropsychological feature of dementia with Lewy bodies (DLB); yet, the specific nature of the attentional deficit and factors that can potentially influence attentional processing in DLB have not been fully defined. AIMS: To clarify the nature of the attentional deficit in early-stage DLB relative to patients with early-stage dementia of the Alzheimer's type (DAT) and elderly controls, and examine the effect of task complexity and type of cognitive load on attentional processing in DLB. METHODS: Attentional impairment and fluctuating attention were investigated in three groups of subjects--patients with clinical features of early probable DLB (n = 20), a group with early probable DAT (n = 19) and healthy elderly controls (n = 20)--using an experimental computerised reaction time paradigm. RESULTS: Patients with DLB showed greater attentional impairment and fluctuations in attention relative to patients with DAT and elderly controls. The attentional deficit was generalised in nature but increased in magnitude as greater demands were placed on attentional selectivity. Attentional deficits in DLB were most pronounced under task conditions that required more active recruitment of executive control and visuospatial cognitive processes. CONCLUSIONS: Attentional deficits in DLB are widespread and encompass all aspects of attentional function. Deficits in higher cortical function influence the degree of attentional impairment and fluctuating attention, suggesting that attentional processing in DLB is mediated by interacting cortical and subcortical mechanisms. These findings serve to clarify the nature of the attentional deficit in DLB and have potentially important ramifications for our understanding of the neurocognitive underpinnings of fluctuations.


Sujet(s)
Maladie d'Alzheimer/physiopathologie , Maladie d'Alzheimer/psychologie , Attention , Maladie à corps de Lewy/physiopathologie , Maladie à corps de Lewy/psychologie , Processus mentaux , Sujet âgé , Sujet âgé de 80 ans ou plus , Cortex cérébral/physiopathologie , Cognition , Femelle , Humains , Mâle , Questionnaire sur l'état mental de Kahn
6.
J Comp Pathol ; 131(2-3): 112-20, 2004.
Article de Anglais | MEDLINE | ID: mdl-15276850

RÉSUMÉ

Archive central nervous tissue from 286 cats with neurological disorders was reviewed for histological evidence of feline spongiform encephalopathy (FSE), which may have occurred before it was first recognized in 1990. The following six categories of disease were identified: congenital; degenerative; inflammatory; neoplastic; FSE; lesion-free. The largest category (inflammatory) contained 92 cats, of which 47 were considered to be consistent with infection by feline infectious peritonitis (FIP) virus. Six cats showed evidence of more than one disease process; thus, one cat with FIP also had toxocara infection of the lateral ventricles and five cats with FSE also showed perivascular cuffing suggestive of concurrent viral infection. In only two cases did the diagnosis on review differ significantly from the original interpretation. There was no evidence of FSE before the original case was recognized in April 1990.


Sujet(s)
Maladies des chats/épidémiologie , Maladies des chats/anatomopathologie , Maladies du système nerveux central/épidémiologie , Maladies du système nerveux central/anatomopathologie , Maladies du système nerveux central/médecine vétérinaire , Animaux , Chats , Microscopie électronique à transmission , Maladies à prions/épidémiologie , Maladies à prions/anatomopathologie , Maladies à prions/médecine vétérinaire , Études rétrospectives
7.
J Feline Med Surg ; 6(4): 279-81, 2004 Aug.
Article de Anglais | MEDLINE | ID: mdl-15265483

RÉSUMÉ

Unilateral swelling of submandibular salivary gland in two cats was diagnosed as necrotising sialometaplasia. Histological features that differentiate the disease from other salivary gland lesions, particularly neoplasia are: lobular necrosis of salivary tissue; squamous metaplasia conforming to duct and/or acinar outlines; preservation of salivary lobular morphology; and variable inflammation and granulation tissue.


Sujet(s)
Maladies des chats/diagnostic , Sialométaplasie nécrosante/médecine vétérinaire , Animaux , Maladies des chats/anatomopathologie , Maladies des chats/chirurgie , Chats , Diagnostic différentiel , Femelle , Mâle , Sialométaplasie nécrosante/diagnostic
8.
Vet Rec ; 148(14): 437-41, 2001 Apr 07.
Article de Anglais | MEDLINE | ID: mdl-11338713

RÉSUMÉ

Feline spongiform encephalopathy (FSE), a transmissible spongiform encephalopathy or prion disease of cats, first reported in Great Britain in 1990, is believed to result from the consumption of food contaminated by the agent of bovine spongiform encephalopathy (BSE). The accumulation of PrP in non-neural tissues of cats diagnosed as suffering from FSE was investigated by immunohistochemistry. In the majority of the cats no disease-specific PrP was detected in lymphoid tissues. Small amounts of PrP were detected in the spleen of only two of 13 samples examined, in Peyer's patches of one of the two cases for which suitable material was available, but in the myenteric plexus of all four cats in which sections of intestine were examined. In addition PrP immunostaining was found in the kidney of all the cats with FSE whose kidneys were examined.


Sujet(s)
Maladies des chats/diagnostic , Rein/anatomopathologie , Tissu lymphoïde/anatomopathologie , Protéines PrPSc/isolement et purification , Maladies à prions/médecine vétérinaire , Animaux , Études cas-témoins , Maladies des chats/anatomopathologie , Chats , Immunohistochimie/médecine vétérinaire , Valeur prédictive des tests , Maladies à prions/diagnostic
9.
Biochemistry ; 39(33): 10072-81, 2000 Aug 22.
Article de Anglais | MEDLINE | ID: mdl-10955995

RÉSUMÉ

SH2 domains are small protein domains that bind specifically to tyrosyl-phosphorylated sequences. Because phosphorylation contributes a large part of the binding free energy, it has been postulated that electrostatic interactions may play an important role in SH2 domain recognition. To test this hypothesis, we have examined the salt dependence of the interaction between tyrosyl-phosphorylated peptides and SH2 domains. The dependence of the binding constant, K(obs), on [NaCl] was shown to be strong for binding of the tandem SH2 domain of the Syk kinase (Syk-tSH2) to doubly phosphorylated peptides derived from immune-receptor tyrosine activation motifs (dpITAMs): the slopes of plots of log(K(obs)) versus log [NaCl], designated SK(obs), ranged from -2.6 +/- 0.1 to -3.1 +/- 0.2. Binding of the single SH2 domain of the Src kinase to its consensus singly phosphorylated peptide (sequence pYEEI where pY indicates a phosphotyrosine) was also highly dependent on [NaCl] with a SK(obs) value of -2.4 +/- 0.1. The ability of salt to disrupt the interactions between Syk-tSH2 and dpITAM peptides was shown to be anion-dependent with the inhibitory effect following the order: phosphate > Cl(-) > F(-). For the Syk-tSH2 system, interactions in the pY-binding pockets were shown to be responsible for a large portion of the total salt dependence: removal of either phosphate from the dpITAM peptide reduced the magnitude of SK(obs) by 40-60% and weakened binding by 2-3 orders of magnitude. Consistent with this finding, binding of the single amino acid Ac-pY-NH(2) was characterized by a large salt dependence of binding and was also dependent on the identity of the perturbing anion. The role of peptide residues C-terminal to the pY, which are implicated in determining the specificity of the phosphopeptide-SH2 domain interaction, was next probed by comparing the binding of the Src SH2 domain to a peptide containing the pYEEI sequence with that of a lower affinity variant pYAAI peptide: the magnitude of SK(obs) for the variant peptide was reduced to -1.3 +/- 0.1 as compared to -2.4 +/- 0.1 for the pYEEI peptide, indicating that in addition to pY, residues conferring peptide binding specificity contribute significantly to the salt dependence of SH2 domain binding. This study shows that electrostatic interactions play important roles not only in mediating pY recognition and binding but also in contributing to the specificity of the interactions between tyrosyl phosphopeptides and SH2 domains.


Sujet(s)
Proenzymes/métabolisme , Phosphopeptides/métabolisme , Phosphotyrosine , Protein-tyrosine kinases/métabolisme , Sels , Domaine d'homologie SRC , src-Family kinases/métabolisme , Séquence d'acides aminés , Sites de fixation , Protéines et peptides de signalisation intracellulaire , Modèles chimiques , Modèles moléculaires , Données de séquences moléculaires , Liaison aux protéines , Électricité statique , Syk kinase
10.
J Mol Biol ; 299(2): 521-35, 2000 Jun 02.
Article de Anglais | MEDLINE | ID: mdl-10860756

RÉSUMÉ

SH2 domains are protein modules which bind tyrosine phosphorylated sequences in many signaling pathways. These domains contain two regions with specialized functions: residues in one region form a deep pocket into which the phosphotyrosine of the target inserts, while the other region contains the so-called "specificity determining residues" which interact with the three residues C-terminal to the phosphotyrosine in the target. Here, titration calorimetry and site-directed mutagenesis have been used to probe the importance of eight specificity determining residues of the SH2 domain of the Src kinase involved in contacts with its tyrosine phosphorylated consensus peptide target (sequence pYEEI where pY indicates a phosphotyrosine). Mutating six of these eight residues to Ala individually, resulted in a threefold or less loss in binding affinity; hence the majority of the residues in the specificity determining region are by themselves of minimal importance for binding. Two residues were found to have significant effects on binding: Tyr betaD5 and Lys betaD3. Tyr betaD5 was the most crucial residue as evidenced by the 30-fold loss in affinity when Tyr betaD5 is mutated to Ile. However, while this mutation eliminated the specificity of the Src SH2 domain for the pYEEI peptide sequence, it was not sufficient to switch the specificity of the Src SH2 domain to that of a related SH2 domain which has an Ile at the betaD5 position. Mutation of Lys betaD3 to an Ala residue resulted in a modest reduction in binding affinity (sevenfold). It is interesting that this mutation resulted in a change of specificity affecting the selection of the +1 position residue C-terminal to the phosphotyrosine. Except for the Lys betaD3-+1 Glu interaction which is significantly coupled, only weak energetic coupling was observed across the binding interface, as assessed using double mutant cycles. The results of this study suggest that interactions involving the specificity determining region of SH2 domains may be insufficient by themselves to target single SH2 domains to particular phosphorylated sites.


Sujet(s)
Mutation/génétique , Domaine d'homologie SRC , src-Family kinases/composition chimique , src-Family kinases/métabolisme , Substitution d'acide aminé/génétique , Sites de fixation , Calorimétrie , Simulation numérique , Séquence consensus , Lysine/génétique , Lysine/métabolisme , Modèles moléculaires , Peptides/composition chimique , Peptides/métabolisme , Phosphotyrosine/métabolisme , Liaison aux protéines , Relation structure-activité , Spécificité du substrat , Thermodynamique , Titrimétrie , Tyrosine/génétique , Tyrosine/métabolisme , src-Family kinases/génétique
11.
J Mol Biol ; 293(4): 971-85, 1999 Nov 05.
Article de Anglais | MEDLINE | ID: mdl-10543978

RÉSUMÉ

The binding of tyrosine phosphorylated targets by SH2 domains is required for propagation of many cellular signals in higher eukaryotes; however, the determinants of phosphotyrosine (pTyr) recognition by SH2 domains are not well understood. In order to identify the attributes of pTyr required for high affinity interaction with SH2 domains, the binding of the SH2 domain of the Src kinase (Src SH2 domain) to a dephosphorylated peptide, a phosphoserine-containing peptide, and the amino acid pTyr was studied using titration calorimetry and compared with the binding of a high affinity tyrosyl phosphopeptide. The dephosphorylated peptide and the phosphoserine containing peptide both bind extremely weakly to the Src SH2 domain (DeltaGo (dephosphorylated)=-3.6 kcal/mol, DeltaGo (phosphoserine) >-3.7 kcal/mol); however, the DeltaGo value of pTyr binding is more favorable (-4.7 kcal/mol, or 50 % of the entire binding free energy of a high affinity tyrosyl phosphopeptide). These results indicate that both the phosphate and the tyrosine ring of the pTyr are critical determinants of high affinity binding. Alanine mutagenesis was also used to evaluate the energetic contribution to binding of ten residues located in the pTyr-binding site. Mutation of the strictly conserved Arg betaB5 resulted in a large increase in DeltaGo (DeltaDeltaGo=3.2 kcal/mol) while elimination of the other examined residues each resulted in a significantly smaller (DeltaDeltaGo<1.4 kcal/mol) reduction in affinity, indicating that Arg betaB5 is the single most important determinant of pTyr recognition. However, mutation of Cys betaC3, a residue unique to the Src SH2 domain, surprisingly increased affinity by eightfold (DeltaDeltaGo=-1.1 kcal/mol). Using a double mutant cycle analysis, it was revealed that residues of the pTyr-binding pocket are not coupled to the peptide residues C-terminal to the pTyr. In addition, comparison of each residue's DeltaDeltaGo value upon mutation with that residue's sequence conservation among SH2 domains revealed only a modest correlation between a residue's energetic contribution to pTyr recognition and its conservation throughout evolution. The results of this investigation highlight the importance of a single critical interaction, the buried ionic bond between the phosphate of the pTyr and Arg betaB5 of the SH2 domain, driving the binding of SH2 domains to tyrosine phosphorylated targets.


Sujet(s)
Phosphotyrosine/métabolisme , Domaine d'homologie SRC , src-Family kinases/composition chimique , src-Family kinases/métabolisme , Substitution d'acide aminé/génétique , Arginine/génétique , Arginine/métabolisme , Fixation compétitive , Calorimétrie , Séquence conservée/génétique , Cystéine/génétique , Cystéine/métabolisme , Évolution moléculaire , Cinétique , Modèles moléculaires , Mutagenèse dirigée/génétique , Fragments peptidiques/composition chimique , Fragments peptidiques/génétique , Fragments peptidiques/métabolisme , Phosphopeptides/composition chimique , Phosphopeptides/génétique , Phosphopeptides/métabolisme , Phosphorylation , Phosphosérine/métabolisme , Relation structure-activité , Thermodynamique , Titrimétrie , src-Family kinases/génétique
12.
J Med Genet ; 36(7): 567-70, 1999 Jul.
Article de Anglais | MEDLINE | ID: mdl-10424821

RÉSUMÉ

Cri du chat syndrome is associated with a deletion on the short arm of chromosome 5. The main diagnostic feature is a high pitched, cat-like cry which has recently been localised to 5p15.3 and is separate from the remaining clinical features of the syndrome, which have been localised to 5p15.2. The present study describes a family of four who have a deletion slightly distal (5p15.3) to the critical region. Detailed neuropsychological evaluations indicated a similar pattern of cognitive performance to that reported for subjects with typical CDCS but with only minimal intellectual impairment. In addition, in this family the 5p deletion is transmitted in an autosomal dominant fashion, contrasting with most cases of CDCS, which are either de novo or occur as an unbalanced product of a balanced translocation in a normal parent. This study confirms the importance of differentiating between 5p deletions that coincide with the typical cri du chat phenotype which includes severe to profound learning disability and deletions that only delete the distal critical region that coincides with a milder degree of cognitive impairment and a much improved prognosis.


Sujet(s)
Chromosomes humains de la paire 5 , Maladie du cri du chat/génétique , Adolescent , Adulte , Enfant , Zébrage chromosomique , Humains , Tests d'intelligence , Caryotypage , Tests neuropsychologiques , Pedigree , Pronostic
14.
Biochemistry ; 38(16): 5147-54, 1999 Apr 20.
Article de Anglais | MEDLINE | ID: mdl-10213620

RÉSUMÉ

SH2 domains are protein modules which interact with specific tyrosine phosphorylated sequences in target proteins. The SH2 domain of the Src kinase binds with high affinity to a tyrosine phosphorylated peptide containing the amino acids Glu, Glu, and Ile (EEI) at the positions +1, +2, and +3 C-terminal to the phosphotyrosine, respectively. To investigate the degree of selectivity of the Src SH2 domain for each amino acid of the EEI motif, the binding thermodynamics of a panel of substitutions at the +1 (Gln, Asp, Ala, Gly), +2 (Gln, Asp, Ala, Gly), and +3 (Leu, Val, Ala, Gly) positions were examined using titration microcalorimetry. It was revealed that the Src SH2 domain is insensitive (DeltaDeltaG degrees

Sujet(s)
Phosphopeptides/métabolisme , Phosphotyrosine/métabolisme , Domaine d'homologie SRC , Alanine/génétique , Alanine/métabolisme , Séquence d'acides aminés , Substitution d'acide aminé/génétique , Animaux , Calorimétrie , Acide glutamique/métabolisme , Température élevée , Humains , Isoleucine/métabolisme , Mutagenèse dirigée , Fragments peptidiques/génétique , Fragments peptidiques/métabolisme , Phosphopeptides/génétique , Phosphotyrosine/génétique , Liaison aux protéines/génétique , Thermodynamique , Domaine d'homologie SRC/génétique
15.
Eval Health Prof ; 22(4): 427-41, 1999 Dec.
Article de Anglais | MEDLINE | ID: mdl-10623399

RÉSUMÉ

The authors randomly selected 400 physicians from a population of 1,545 practicing physicians providing follow-up care to patients who received bone marrow or blood stem cell transplants at the Fred Hutchinson Cancer Research Center to determine interest in receiving Internet-based transplant information. In a two-factor completely randomized factorial design, the 400 physicians were assigned to receive mailed surveys with either no compensation or a $5 check and either no follow-up call or a follow-up call 3 weeks after mailing. Overall, 51.5% of the physicians returned the mailed surveys. Comparison of logit models showed that inclusion of a $5 check in the mailer significantly (p = .016) increased the probability of returning the surveys (57.5% vs. 45.5%). In contrast, the telephone follow-up had no overall effect. The authors concluded a modest financial reward can significantly improve physician response rates to research surveys but a telephone follow-up may be inefficient and even ineffective.


Sujet(s)
Attitude du personnel soignant , Motivation , Médecins/psychologie , Recherche , Enquêtes et questionnaires , Adulte , Post-cure , Sujet âgé , Analyse statistique factorielle , Femelle , Humains , Services d'information , Internet , Modèles logistiques , Mâle , Adulte d'âge moyen , Transplantation d'organe , États-Unis
16.
Biochemistry ; 37(44): 15400-7, 1998 Nov 03.
Article de Anglais | MEDLINE | ID: mdl-9799501

RÉSUMÉ

The binding of Src homology 2 (SH2) domains to tyrosyl phosphopeptides depends on electrostatic interactions between the phosphotyrosine and its binding site. To probe the role of these interactions, we have used isothermal titration calorimetry to study the pH dependence of the binding of the SH2 domain of the Src kinase to a high-affinity tyrosyl phosphopeptide. Two independent approaches were employed. In a first series of experiments that focused on determining the peptide's association constant between pH 5.0 and 9.0, two ionizable groups were characterized. One group, with free and bound pKas of 6.2 and 4.4, respectively, could be identified as the phosphate in the phosphotyrosine while the other group, with free and bound pKas of 8.2 and 8.5, respectively, could be only tentatively assigned to a cysteine in the phosphotyrosine binding pocket. Further information on the linkage between peptide binding and protonation of the phosphotyrosine was obtained from a second series of experiments, which focused on determining the peptide binding enthalpy at low values of pH in several buffers with different ionization enthalpies. These data provided free and bound pKa values for the phosphotyrosine identical to those derived from the first series of experiments, and hence demonstrated for the first time that the two approaches provide identical information regarding proton linkage. In addition, the second series of experiments also determined the intrinsic enthalpy of binding of both the protonated and deprotonated phosphate forms of the peptide. These two sets of experiments provided a complete energetic profile of the linkage between phosphate ionization and peptide binding. From this profile, it was determined that the PO32- form of the peptide binds 2.3 kcal mol-1 more favorably than the PO3H1- form due entirely to a more favorable entropy of binding.


Sujet(s)
Peptides/métabolisme , Phosphotyrosine/métabolisme , Protons , Thermodynamique , Domaine d'homologie SRC , Animaux , Antigènes transformants de polyomavirus/composition chimique , Antigènes transformants de polyomavirus/métabolisme , Calorimétrie , Cricetinae , Humains , Concentration en ions d'hydrogène , Modèles chimiques , Peptides/composition chimique , Phosphotyrosine/composition chimique , Liaison aux protéines
17.
Structure ; 6(9): 1141-51, 1998 Sep 15.
Article de Anglais | MEDLINE | ID: mdl-9753693

RÉSUMÉ

BACKGROUND: SH2 domains have a fundamental role in signal transduction. These domains interact with proteins containing phosphorylated tyrosine residues and, in doing so, mediate the interactions of proteins involved in tyrosine kinase signalling. The issue of specificity in SH2 domain interactions is therefore of great interest in terms of understanding tyrosine kinase signal-transduction pathways and in the discovery of drugs to inhibit them. Water molecules are found at the interfaces of many complexes, however, to date little attention has been paid to their role in dictating specificity. RESULTS: Here we use a combination of nanoflow electrospray ionization mass spectrometry (ESI-MS), isothermal titration calorimetry and structural data to investigate the effect of water molecules in complexes formed between the SH2 domain of tyrosine kinase Src and tyrosyl phosphopeptides. Binding studies have been performed using a series of different peptides that were selected to allow changes in the water content at the complex interface and demonstrate changes in specificity. ESI-MS enables quantification of the number of water molecules that interact with a higher affinity than those generally found solvating the biomolecular complex. CONCLUSIONS: Comparing the interactions of different peptides, we show that an intricate network of water molecules have a key role in dictating specificity. The use of mass spectrometry to quantify tightly bound water molecules may prove of general use in structural biology, where an independent determination of the water molecules associated with a structure would be advantageous. Furthermore, the ability to assess whether given water molecules are important in high-affinity binding could make this method a precious tool in drug design.


Sujet(s)
Phosphopeptides/métabolisme , Tyrosine , Eau , Domaine d'homologie SRC , Cristallographie aux rayons X , Liaison hydrogène , Spectroscopie par résonance magnétique , Spectrométrie de masse , Modèles chimiques , Liaison aux protéines , Conformation des protéines , Thermodynamique
18.
Biochemistry ; 37(25): 9083-90, 1998 Jun 23.
Article de Anglais | MEDLINE | ID: mdl-9636054

RÉSUMÉ

Src homology 2 (SH2) domains are protein modules that specifically bind to tyrosyl phosphorylated peptides on signaling proteins. X-ray crystallographic studies of the SH2 domain of the Src kinase have probed the mechanism of binding, leading to the "two-pronged plug two-holed socket" mechanism whereby binding is hypothesized to resemble a two-pronged plug (the peptide) inserting into a two-holed socket (the SH2 domain). This binding model predicts (1) a hydrophobic basis for high-affinity binding largely determined by the level of insertion of the third residue C-terminal to the phosphotyrosine in the peptide into a primarily hydrophobic pocket (the +3 binding pocket) of the SH2 domain, and (2) a binding mechanism involving no significant conformational changes in the SH2 domain. In this study, we have probed these predictions by using isothermal titration calorimetry to extract complete thermodynamic profiles (Delta G degrees, Delta H degrees, Delta S degrees, Delta Cp degrees) for the binding of the Src SH2 domain to two series of tyrosyl phosphopeptides. One series consisted of peptides that have been determined by X-ray crystallography to have different levels of insertion of the peptide's +3 position into the +3 binding pocket. The other series consisted of peptides with progressively smaller hydrophobic side chains (I, L, V, and A) at the +3 position. Consistent with a binding mechanism that does not involve substantial conformational changes, the Delta Cp degrees values for all peptides were small and, at least for the high-affinity interactions, similar to the Delta Cp degrees values predicted from surface area calculations. However, unexpectedly, this study reveals that high-affinity binding was only partially determined by the interactions between the +3 residue in the peptide and the +3 binding pocket. Furthermore, the Delta Cp degrees values for all peptides studied were similar, implying similar degrees of desolvation of the +3 binding pocket upon binding. These results indicate that the "two-pronged plug two-holed socket" model is an oversimplification of the Src SH2 domain binding mechanism.


Sujet(s)
Modèles moléculaires , Phosphopeptides/métabolisme , Phosphotyrosine/métabolisme , Thermodynamique , Domaine d'homologie SRC , Animaux , Antigènes transformants de polyomavirus/composition chimique , Antigènes transformants de polyomavirus/métabolisme , Calorimétrie , Cricetinae , Humains , Phosphopeptides/composition chimique , Phosphotyrosine/composition chimique , Liaison aux protéines , Structure secondaire des protéines , Récepteurs aux facteurs de croissance dérivés des plaquettes/composition chimique , Récepteurs aux facteurs de croissance dérivés des plaquettes/métabolisme , Relation structure-activité , Propriétés de surface , Température
19.
Proc AMIA Symp ; : 386-90, 1998.
Article de Anglais | MEDLINE | ID: mdl-9929247

RÉSUMÉ

Evidence-based practice in medicine promotes the performance of medicine based upon proven and validated practice. The CARE-PARTNER system presented here is a computerized knowledge-support system for stem-cell post-transplant long-term follow-up (LTFU) care on the WWW, which means that it monitors the quality of the knowledge both of its own knowledge-base and of its users. Its aim is to support the evidence-based practice of the LTFU clinicians and of the home-town physicians who actually care for the transplanted patients. Currently, three fundamental characteristics of CARE-PARTNER are accountable for its knowledge-support function: the quality of its knowledge-base, its availability on the WWW, and its learning from experience capability. As a matter of fact, the integration of a case-based reasoner in the reasoning framework enables the system to introspectively study its results, and to learn from its successes and failures, thus confronting the quality of the guidelines and pathways it reuses to the reality and complexity of the clinical cases.


Sujet(s)
Intelligence artificielle , Transplantation de cellules souches hématopoïétiques , Internet , Thérapie assistée par ordinateur , Continuité des soins , Systèmes d'aide à la décision clinique , Médecine factuelle , Humains
20.
J Comp Pathol ; 115(1): 77-84, 1996 Jul.
Article de Anglais | MEDLINE | ID: mdl-8878753

RÉSUMÉ

Three cases of urethral caruncle were recognized in bitches with a history of chronic dysuria. Clinical and radiological examinations revealed the presence of inoperable lesions involving much of the urethra in all three cases. At post-mortem examination of Case 1, an oval swelling, 1.5 x 1.0 cm, was detected within the wall of the urethra close to the vagino-urethral orifice. In Case 2, firm, mottled yellow, white and red tissue formed a thickening between the urethra and vagina. In Case 3, a cylindrical cream mass, 8 cm long and 3 cm in diameter, surrounded the urethra and impinged on the wall of the vagina. Histologically, glandular structures lined by a single layer of epithelial cells and a mixed granulomatous inflammatory reaction were present in the wall of the urethra of all three cases.


Sujet(s)
Maladies des chiens/étiologie , Maladies de l'urètre/médecine vétérinaire , Troubles mictionnels/médecine vétérinaire , Animaux , Calculs/composition chimique , Calculs/médecine vétérinaire , Chiens , Femelle , Hyperplasie/imagerie diagnostique , Radiographie , Urètre/imagerie diagnostique , Urètre/anatomopathologie , Maladies de l'urètre/complications , Maladies de l'urètre/imagerie diagnostique , Obstruction urétrale/étiologie , Obstruction urétrale/médecine vétérinaire , Vessie urinaire/imagerie diagnostique , Vessie urinaire/anatomopathologie , Troubles mictionnels/complications
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