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1.
Arch Oral Biol ; 48(12): 843-50, 2003 Dec.
Article de Anglais | MEDLINE | ID: mdl-14596874

RÉSUMÉ

UNLABELLED: Ameloblastomas are the most common odontogenic neoplasia in humans, and although typically considered locally invasive and benign, frequently recur subsequent to surgical resection. The Tg.AC transgenic mouse carrying the v-Ha-ras oncogene has been found to spontaneously develop ameloblastoma-like tumours (35% by 1 year of age) that are rare in the wild type FVB background strain. OBJECTIVE: The purpose of this study was to characterise the mRNA expression of genes in the mouse tumours that are either expressed in human ameloblastomas or essential for normal odontogenesis and to correlate the expression to the histological phenotype. STUDY METHODS: Histological, immunohistochemical and RT-PCR studies were used to evaluate clinically demonstrable odontogenic tumours occurring spontaneously in seven Tg.AC v-Ha-ras transgenic mice (homozygous, at 7 months of age or heterozygous at 11 months of age). RESULTS: Most genes profiled were expressed in all tumour samples, however three (amelogenin, matrix metalloproteinase-20 (MMP-20) and Dlx7) displayed differential expression. In addition, only the most highly differentiated tumour stained positively for collagen. In most cases, the variable expression could be explained by reference to the histological phenotype, although differences in gene expression were apparent within the Type 2 and the mixed phenotype tumours. CONCLUSIONS: These data confirm that many of the genes thought to be important in odontogenesis and odontogenic tumour formation in humans are also expressed in these murine ameloblastoma-like tumours however genes associated with terminal differentiation of ameloblasts demonstrate differential expression between the tumour phenotypes.


Sujet(s)
Améloblastome/métabolisme , Gènes ras , Tumeurs de la mâchoire/métabolisme , Protéines tumorales/génétique , ARN messager/analyse , Facteurs de transcription , Améloblastome/anatomopathologie , Amélogénine , Animaux , Différenciation cellulaire , Protéines de l'émail dentaire/analyse , Protéines de l'émail dentaire/génétique , Expression des gènes , Protéines à homéodomaine/analyse , Protéines à homéodomaine/génétique , Immunohistochimie/méthodes , Tumeurs de la mâchoire/anatomopathologie , Énamelysine , Matrix metalloproteinases/analyse , Matrix metalloproteinases/génétique , Souris , Souris transgéniques , Protéines tumorales/analyse , RT-PCR
2.
Mol Carcinog ; 32(4): 176-86, 2001 Dec.
Article de Anglais | MEDLINE | ID: mdl-11746829

RÉSUMÉ

The Tg.AC transgenic mouse carries a v-Ha-ras transgene. Skin papillomas develop in Tg.AC mice upon repeated dermal application of tumor promoters and carcinogens. The transgene is inserted at a single site on chromosome 11 in a multiple-copy array. Although most of the >or= 40 copies are arranged in a direct-repeat orientation, two copies of the transgene are inserted in a palindromic, inverted-repeat orientation. Deletion of the palindromic transgene promoter sequence is associated strongly with and diagnostic of loss of phenotypic responsiveness to Tg.AC papillomagens, such as 12-O-tetradecanoylphorbol-13-acetate (TPA). Unexpectedly, a loss of palindromic transgene sequence, in the absence of an observable reduction in copy number of the direct-repeat-oriented transgene sequence, is seen in DNA from papillomas when compared to genomic DNA from tail clips or skin samples away from the application site. Transgene-derived transcripts were detectable in all Tg.AC papillomas sampled. The transgene locus was hypomethylated in papillomas but not in samples from tail clips from the same animal or from skin samples away from the application site in responder Tg.AC mice, as shown by loss of resistance to digestion by HpaII. A cell line derived from a Tg.AC squamous cell carcinoma showed complete loss of the palindromic transgene sequence, hypomethylation of the transgene locus, and strong expression of v-Ha-ras mRNA. These data indicate that the palindromic transgene sequence, which appears to be necessary for initial responsiveness to tumorigens, may be susceptible to deletion during rapid cellular proliferation and is not required for transgene expression in later phases of papilloma growth.


Sujet(s)
Régulation de l'expression des gènes tumoraux , Gènes ras , Papillome/génétique , Tumeurs cutanées/génétique , Animaux , Cancérogènes/toxicité , Régulation de l'expression des gènes tumoraux/effets des médicaments et des substances chimiques , Prédisposition génétique à une maladie , Souris , Souris transgéniques , Papillome/induit chimiquement , Régions promotrices (génétique) , ARN messager/génétique , Délétion de séquence , Tumeurs cutanées/induit chimiquement , 12-Myristate-13-acétate de phorbol/toxicité
3.
Genomics ; 70(3): 292-9, 2000 Dec 15.
Article de Anglais | MEDLINE | ID: mdl-11161779

RÉSUMÉ

Transformation-associated recombination (TAR) cloning allows entire genes and large chromosomal regions to be specifically, accurately, and quickly isolated from total genomic DNA. We report the first example of radial TAR cloning from the mouse genome. Tg.AC mice carry a zeta-globin promoter/v-Ha-ras transgene. Fluorescence in situ hybridization localized the transgene integrant as a single site proximal to the centromere of chromosome 11. Radial TAR cloning in yeast was utilized to create orientation-specific yeast artificial chromosomes (YACs) to explore the possibility that cis-flanking regions were involved in transgene expression. YACs containing variable lengths of 5' or 3' flanking chromosome 11 DNA and the Tg.AC transgene were specifically chosen, converted to bacterial artificial chromosomes (BACs), and assayed for their ability to promote transcription of the transgene following transfection into an FVB/N carcinoma cell line. A transgene-specific reverse transcription-polymerase chain reaction assay was utilized to examine RNA transcripts from stably transfected clones. All Tg.AC BACs expressed the transgene in this in vitro system. This report describes the cloning of the v-Ha-ras transgene and suggests that transcriptional activity may not require cis elements flanking the transgene's integration site.


Sujet(s)
ADN/génétique , Génome , Recombinaison génétique , Transgènes , Animaux , Séquence nucléotidique , Chromosomes artificiels de bactérie , Chromosomes artificiels de levure , Clonage moléculaire , Amorces ADN , Hybridation fluorescente in situ , Souris , Réaction de polymérisation en chaîne
4.
Mol Carcinog ; 29(4): 229-35, 2000 Dec.
Article de Anglais | MEDLINE | ID: mdl-11170261

RÉSUMÉ

This work was initiated to determine the potential for the Tg.AC mouse model to identify chemical carcinogens by an oral route of administration. Tg.AC v-Ha-ras transgenic mice were exposed to dimethyvinyl chloride (DMVC; 1-chloro-2-methylpropene), a structural analog of the human carcinogen vinyl chloride. In the National Toxicology Program 2-yr bioassay, DMVC induced tumors in the oral, nasal, and gastric epithelia of rats and mice. Initial studies were performed in female Tg.AC mice to determine an appropriate oral dose of DMVC to evaluate the potential for stratified gastric or oral epithelia of Tg.AC mice to serve as a target tissue for a transgene-dependent induced tumorigenic response. DMVC was administered to 13- to14-wk-old Tg.AC mice by gavage at doses of 0, 50, 100, and 200 mg/kg five times a week for 20 wk. The forestomachs of DMVC-treated Tg.AC mice had an increasing number of papillomas, which were associated with an increase in the dose of DMVC. The average numbers of papillomas per mouse per dose were 2.4, 7.6, 14.1, and 12.6 for the 0, 50, 100, and 200-mg/kg dose groups, respectively. The optimum papillomagenic dose of 100 mg/kg DMVC was established and administered for 5, 10, and 15/wk to investigate the kinetics of papilloma induction in Tg.AC mice. The average numbers of papillomas per animal were 1.8, 8.8, and 19.0 at 5, 10, and 15 wk, respectively. Reverse transcription-polymerase chain reaction assays determined that the v-Ha-ras transgene was transcriptionally active in all tumor tissues but not in nontumor tissues. In situ hybridization assays performed in conjunction with bromodeoxyuridine in vivo labeling localized the transgene-expressing cells of the forestomach papillomas to the proliferating cellular component of the tumors, as previously seen in skin papillomas of Tg.AC mice. The present results confirm that DMVC is tumorigenic and that oral routes of administration can be used to rapidly elicit a transgene-associated tumor response in the forestomach of Tg.AC mice.


Sujet(s)
Cancérogènes/pharmacologie , Papillome/anatomopathologie , Tumeurs de l'estomac/anatomopathologie , Chloro-éthylène/analogues et dérivés , Chloro-éthylène/pharmacologie , Administration par voie orale , Animaux , Tests de cancérogénicité , Relation dose-effet des médicaments , Femelle , Expression des gènes , Souris , Souris transgéniques , Papillome/induit chimiquement , Papillome/génétique , ARN messager/génétique , ARN messager/métabolisme , RT-PCR , Tumeurs de l'estomac/induit chimiquement , Tumeurs de l'estomac/génétique , Transgènes/génétique , Protéines G ras/génétique
6.
Toxicol Pathol ; 26(4): 562-9, 1998.
Article de Anglais | MEDLINE | ID: mdl-9715516

RÉSUMÉ

Alterations in growth factor signaling pathways frequently accompany the development and maintenance of epithelial neoplasia. Transforming growth factor alpha (TGF alpha) and its epidermal growth factor receptor have been thought to play an especially important role in epithelial neoplasia. In this study, mice were derived genetically deficient (null) in functional TGF alpha expression and carrying the Tg.AC/v-Ha-ras transgene. The goals were to determine if (a) papillomagenesis was dependent on TGF alpha and (b) progression to malignancy was dependent on TGF alpha expression. Groups of male and female mice heterozygous or homozygous for the TGF alpha null allele and hemizygous for the Tg.AC transgene were treated twice weekly for 10 or 15 wk with doses of 12-O-tetradecanoylphorbol-13-acetate (TPA) known to produce papillomas in Tg.AC mice. Papillomas were readily induced in both male and female TGF alpha null mice. Malignant progression of papillomas was observed in all TGF alpha null treatment groups. Additionally, we examined the response of TGF alpha null mice to full thickness dorsal wounds, a stimulus known to promote papillomagenesis in Tg.AC mice. As in the TPA study, papillomas were induced in both male and female TGF alpha null mice. These studies indicate that TGF alpha is not required for the induction and maintenance of papillomas nor is it essential for the malignant conversion of papillomas in Tg.AC mice.


Sujet(s)
Carcinome épidermoïde/anatomopathologie , Carcinomes/anatomopathologie , Papillome/anatomopathologie , Tumeurs cutanées/anatomopathologie , Facteur de croissance transformant alpha/physiologie , Animaux , Cancérogènes/métabolisme , Carcinomes/induit chimiquement , Carcinome épidermoïde/induit chimiquement , Récepteurs ErbB/biosynthèse , Récepteurs ErbB/génétique , Femelle , Génotype , Souris , Souris transgéniques , Papillome/induit chimiquement , Rats , RT-PCR , Tumeurs cutanées/induit chimiquement , Facteur de croissance transformant alpha/déficit , Facteur de croissance transformant alpha/génétique , Cicatrisation de plaie
7.
Am J Pathol ; 153(1): 247-54, 1998 Jul.
Article de Anglais | MEDLINE | ID: mdl-9665485

RÉSUMÉ

A transgenic mouse line (Tg.AC) carrying an activated v-Ha-ras oncogene fused to the embryonic zeta-globin promoter develops an array of spontaneous epithelial and mesenchymal neoplasms. In this report we describe the morphological, immunophenotypic, and molecular features of a unique hematopoietic neoplasm in these mice. The cardinal lesion of this disease is marked hepatomegaly due to leukemic proliferation and infiltration. In the peripheral blood, there is a marked increase in the number of metarubricytes and other less differentiated erythroid progenitor cells. Leukemic cells stain positively with an erythroid-associated nuclear transcription factor (GATA-1). Using a reverse transcription polymerase chain reaction assay, co-expression of GATA-1 and endogenous zeta-globin genes is detected in hematopoietic tissues of nonleukemic transgenic and nontransgenic mice. ras transgene expression is, however, detected only in normal bone marrow and leukemic tissues of transgenic mice, and 5' mapping experiments using S1 protection analysis of total RNA from leukemic tissue indicates that transcription of the transgene mRNA is initiated from the natural zeta-globin promoter start site, supporting the belief that the zeta-globin promoter directs v-Ha-ras expression in erythroid progenitor cells, ultimately leading to leukemic transformation.


Sujet(s)
Gènes ras/génétique , Leucémie érythroblastique aigüe/génétique , Leucémie érythroblastique aigüe/anatomopathologie , Animaux , Hémogramme , Cellules sanguines/métabolisme , Moelle osseuse/métabolisme , Protéines de liaison à l'ADN/métabolisme , Facteurs érythroïdes spécifiques , Facteur de transcription GATA-1 , Globines/métabolisme , Leucémie érythroblastique aigüe/métabolisme , Foie/métabolisme , Foie/anatomopathologie , Souris , Souris transgéniques , Taille d'organe , Réaction de polymérisation en chaîne , Rate/métabolisme , Rate/anatomopathologie , Facteurs de transcription/métabolisme , Transcription génétique , Protéines G ras/métabolisme
8.
Biochem Biophys Res Commun ; 247(3): 644-53, 1998 Jun 29.
Article de Anglais | MEDLINE | ID: mdl-9647747

RÉSUMÉ

One of the most frequently detected changes in human solid tumors is the mutation of the ras oncogene, which has been associated with production of angiogenic growth factors such as vascular endothelial growth factor/vascular permeability factor (VEGF/VPF). Using the v-Ha-ras Tg-AC transgenic mice and the background FVB/N strain of inbred mice, the pattern of expression of specific VEGF/VPF transcripts was characterized in major organs and in skin, papillomas, and carcinomas during multi-stage skin carcinogenesis. Three VEGF/VPF transcripts were found to be constitutively expressed in skin as well as the major organs in both mouse strains, which corresponded in size and sequence to previously reported murine VEGF120 with a bp size of 331, VEGF164 with a bp size of 333, and VEGF188 with a bp size of 407. A previously unreported fourth murine transcript was also detected in skin and major tissues from both mouse strains which corresponded to rat VEGF144, with a bp size of 404. In addition, a unique 425 bp VEGF transcript which corresponded to human VEGF205 was present in highly vascularized tissues including heart, lung, liver, kidney, brain, as well in papillomas and carcinomas isolated from v-Ha-ras Tg.AC mice. In contrast, VEGF205 was present only in carcinomas derived from FVB/N mice. An antibody generated from a peptide sequence designed to detect each of the five VEGF/VPF peptides defined by RT-PCR analysis confirmed the existence of these five peptides and confirmed that the murine VEGF205 peptide was selectively expressed in papillomas and carcinomas derived from v-Ha-ras Tg.AC mice. These results demonstrate that there is significant alternative splicing of the murine VEGF/VPF gene during multi-stage carcinogenesis, which results in four commonly expressed VEGF transcripts. In addition, these studies identified a fifth VEGF transcript and peptide at the later stages of tumor promotion and in progression which appears to be linked to the presence of v-Ha-ras.


Sujet(s)
Facteurs de croissance endothéliale/génétique , Régulation de l'expression des gènes tumoraux/génétique , Gènes ras/génétique , Lymphokines/génétique , Tumeurs cutanées/génétique , Épissage alternatif/génétique , Animaux , Souris , Lignées consanguines de souris , Souris transgéniques , Protéines tumorales/composition chimique , Néovascularisation pathologique/physiopathologie , Papillome/génétique , Réaction de polymérisation en chaîne , ARN messager/génétique , Tumeurs cutanées/anatomopathologie , Transcription génétique/génétique , Facteur de croissance endothéliale vasculaire de type A , Facteurs de croissance endothéliale vasculaire
9.
Mol Carcinog ; 21(4): 244-50, 1998 Apr.
Article de Anglais | MEDLINE | ID: mdl-9585254

RÉSUMÉ

Tg.AC transgenic mice have a transgene composed of a zeta-globin transcriptional control region, a v-Ha-ras coding region, and a simian virus 40 3' polyadenylation signal sequence. Induced ectopic expression of the transgene by chemical treatment or full-skin-thickness wounding leads to the development of skin papillomas. Reverse transcription-polymerase chain reaction assays and protein blotting indicated that the transgene was expressed 16-28 d after full-skin-thickness surgical wounding. Normal unwounded skin did not express the transgene. DNA blotting indicated that the position of the transgene remained stable during wound-induced tumorigenesis. Concomitant with the v-Ha-ras mRNA and protein expression was the hypomethylation of specific MspI/HpaII sites within the transgene. These results are consistent with the hypothesis that hypomethylation is required for the induced and sustained expression of the Tg.AC v-Ha-ras transgene in spontaneous and induced tumors in Tg.AC mice.


Sujet(s)
Transformation cellulaire néoplasique/génétique , Méthylation de l'ADN , Régulation de l'expression des gènes , Gènes ras , Protéine oncogène p21(ras)/physiologie , Papillome/génétique , Tumeurs cutanées/génétique , Peau/traumatismes , Transgènes , Cicatrisation de plaie/génétique , Animaux , Femelle , Globines/génétique , Souris , Souris transgéniques , Protéine oncogène p21(ras)/biosynthèse , Protéine oncogène p21(ras)/génétique , Papillome/étiologie , Réaction de polymérisation en chaîne , Virus simien 40/génétique , Tumeurs cutanées/étiologie , Transcription génétique , Plaies et blessures/complications
10.
Mol Carcinog ; 20(1): 108-14, 1997 Sep.
Article de Anglais | MEDLINE | ID: mdl-9328441

RÉSUMÉ

The Tg.AC transgenic mouse, which harbors an activated v-Ha-ras coding region that is fused to an embryonic zeta globin transcriptional control region and a 3' simian virus 40 polyadenylation sequence, rapidly develops epidermal papillomas in response to topical application of chemical carcinogens or tumor promoters or to full-thickness wounding of the dorsal skin. In this report, we investigated the localization and temporal induction of v-Ha-ras transgene expression after full-thickness wounding of Tg.AC mouse skin. Surgically inflicted full-thickness incisions 3 cm long yielded four to six papillomas per Tg.AC mouse by 5 wk after wounding. Similar wounding of the FVB/N isogenic host strain did not produce tumors, which implicates a causal role for the v-Ha-ras transgene. Reverse transcription-polymerase chain reaction assays detected the v-Ha-ras transgene transcript in total RNA samples isolated from wound-associated tissue 3 and 4 wk after wounding. Tissues 1-2 wk after wounding and all non-wound-associated tissues were negative for transgene expression. In situ hybridization experiments using transgene-specific 35S-labeled antisense RNA probes localized transgene expression to the basal epidermal cells in wound-induced papillomas. Adjacent normal and hyperplastic skin tissues were negative for transgene expression by this assay. This work supports the hypothesis that the wound repair response leads to the transcriptional activation and continued expression of the v-Ha-ras transgene in specific cells in the skin, which alters normal epithelial differentiation and ultimately results in neoplastic growth.


Sujet(s)
Régulation de l'expression des gènes tumoraux , Gènes ras , Papillome/étiologie , Papillome/métabolisme , Tumeurs cutanées/étiologie , Tumeurs cutanées/métabolisme , Transgènes , Plaies et blessures/complications , Plaies et blessures/métabolisme , Animaux , Femelle , Expression des gènes , Hybridation in situ , Souris , Lignées consanguines de souris , Souris transgéniques , Papillome/génétique , Réaction de polymérisation en chaîne , ARN messager/génétique , ARN messager/métabolisme , Tumeurs cutanées/génétique
13.
Plasmid ; 28(3): 194-200, 1992 Nov.
Article de Anglais | MEDLINE | ID: mdl-1461938

RÉSUMÉ

Genetic analysis of Acetobacter xylinum, a cellulose-synthesizing bacterium, has been limited by lack of a successful transformation method. Transformation of A. xylinum was attempted using two broad-host-range plasmids (pUCD2 and pRK248) and a variety of transformation methods. Methods using CaCl2, freeze/thaw treatments, and polyethylene glycol were unsuccessful. Transformation of a cellulose-negative strain of A. xylinum with plasmid DNA has been achieved with high-voltage electroporation. Electroporation conditions of 25 microF capacitance, 2.5 kV, 400 ohms resistance, and pulse lengths of 6-8 ms were applied to a cell/DNA mixture in a 0.2-cm cuvette. Plasmid pUCD2 transformed at an efficiency of 10(6)-10(7) transformants/micrograms DNA and pRK248 yielded 10(5) transformants/micrograms DNA. The frequency of transformation increased linearly with increasing DNA concentration, while transformation efficiency remained constant. pUCD2 was recovered from transformants following chloramphenicol amplification and observed by agarose gel electrophoresis. Both plasmids could be reisolated from Escherichia coli after back-transformation with alkaline lysis DNA preparations from Acetobacter transformants. Electro-transformation of A. xylinum with plasmid DNA suggests its potential use for analysis of the A. xylinum genome.


Sujet(s)
Gluconacetobacter xylinus/génétique , Transformation génétique , Cellulose/biosynthèse , ADN bactérien/génétique , Électricité , Études d'évaluation comme sujet , Gluconacetobacter xylinus/métabolisme , Plasmides
14.
Crit Rev Microbiol ; 17(6): 435-47, 1991.
Article de Anglais | MEDLINE | ID: mdl-2039586

RÉSUMÉ

Cellulose is the most abundant biological polymer on Earth. It is found in wood and cotton, and forms the basic structural foundation of the cell wall of almost all eukaryotic plants. Bacteria are known to secrete cellulose as part of their metabolism of glucose and other sugars. The focus of this review is upon bacterial cellulose synthesis. We emphasize recent literature directed primarily upon Acetobacter xylinum, which has been most widely studied. Our review covers the following topics relating to cellulose synthesis: genetics, biochemistry, ultrastructure, growth conditions, and ecological considerations as they relate to the diversity of microbes capable of synthesizing this abundant, unique polymer--cellulose.


Sujet(s)
Acetobacter/métabolisme , Cellulose/biosynthèse , Acetobacter/croissance et développement , Acetobacter/ultrastructure
15.
Mol Gen Genet ; 219(1-2): 1-8, 1989 Oct.
Article de Anglais | MEDLINE | ID: mdl-2482436

RÉSUMÉ

SOD-4, a cytosolic form of superoxide dismutase in maize, originally was defined as a single band of activity by zymogram analysis. The protein was purified to "homogeneity" as shown by a single band on native or denaturing polyacrylamide gels and a single spot on two dimensional gels. The N-terminal amino acid sequence for the first 20 residues was determined for the purified SOD-4 protein. All residues were clearly determined except for residue twelve, where both glutamic and aspartic acids were found. A maize lambda gt11 cDNA library was constructed from scutellar poly(A)+ RNA. Two cDNAs were isolated, restriction mapped, and their DNA sequences determined. The amino acid sequence deduced from both cDNAs matched perfectly the N-terminal sequence of the purified protein except for the residue at position 12. Significantly, at the twelfth codon, one cDNA was found to code for glutamic acid and the other cDNA had a codon for aspartic acid. Both cDNAs contained similar but not identical 5' and 3' untranslated sequences. Both cDNAs contained polyadenylation signals and tails. cDNA isolations, RNA, and genomic DNA blots confirm the existence and expression of two genes that produce indistinguishable SOD-4 proteins.


Sujet(s)
Gènes de plante , Superoxide dismutase/génétique , Zea mays/génétique , Séquence d'acides aminés , Animaux , Séquence nucléotidique , ADN/génétique , ADN/isolement et purification , Électrophorèse bidimensionnelle sur gel , Humains , Isoenzymes , Données de séquences moléculaires , Tests aux précipitines , ARN/génétique , Cartographie de restriction , Similitude de séquences d'acides nucléiques , Superoxide dismutase/isolement et purification , Superoxide dismutase/métabolisme , Zea mays/enzymologie
16.
Appl Environ Microbiol ; 55(10): 2448-52, 1989 Oct.
Article de Anglais | MEDLINE | ID: mdl-16348023

RÉSUMÉ

The cellulose-producing bacterium Acetobacter xylinum has been considered a strict aerobe, and it has been suggested that the function of cellulose is to hold cells in an aerobic environment. In this study, we showed that A. xylinum is capable of growing microaerophilically. Cellulose pellicles provided significant protection to A. xylinum cells from the killing effects of UV light. In experiments measuring colonization by A. xylinum, molds, and other bacteria on pieces of apple, cellulose pellicles enhanced colonization of A. xylinum on the substrate and provided protection from competitors which use the same substrate as a source of nutrients. Cellulose pellicles produced by A. xylinum may have multiple functions in the growth and survival of the organism in nature.

17.
Appl Environ Microbiol ; 55(5): 1317-9, 1989 May.
Article de Anglais | MEDLINE | ID: mdl-16347923

RÉSUMÉ

Acetobacter xylinum is a bacterium that can synthesize cellulose when grown in an undefined medium containing glucose. We developed a defined minimal medium for A. xylinum that contains 1% glucose, 0.1% NH(4)Cl, 0.115% citric acid, 0.33% Na(2)HPO(4), 0.01% KCl, 0.025% MgSO(4). 7H(2)O, and 7.5 mg of nicotinamide per liter which both allows cellulose synthesis and can be used to isolate a variety of auxotrophic mutants.

18.
J Mol Biol ; 194(3): 423-42, 1987 Apr 05.
Article de Anglais | MEDLINE | ID: mdl-3625769

RÉSUMÉ

The outer boundaries of the internal transcriptional control region in the VARNA1 gene have been located from positions +10 to +69. To further define the detailed organization of the functional domains in this region and the function(s) of the 5' flanking sequence, and to obtain a more detailed insight into other transcriptionally important sequences, we have constructed 77 mutants with deletion endpoints at almost every one to five base-pairs in the entire region from -30 to +160 for transcriptional studies. Using our highly active crude extract under our assay conditions, and quantitatively measuring the transcriptional efficiency and competing strength of each mutant, we have revealed new features of important transcriptional control sequences and defined the transcriptional functions of several functional domains in this gene. The essential domain is from +59/+63 to +66/+68, which corresponds to the B block sequence. This is smaller than that defined previously. The second most important domain is the region from +12/14 to +40, which includes the A block sequence that dictates the wild-type major start site and amplifies the events started by the B block region, mediated through factors and RNA polymerase III. Furthermore, the domain from -5 to +11 affects the use of certain start site(s). Moreover, the 5' flanking region from -30 to +1 contributes 80 to 90% of the overall transcriptional efficiency of the gene. Finally, our transcriptional studies of mutants deleted of the A block sequence and all of the upstream sequence indicated that an intimate interaction between the two blocks is essential for initiation of transcription. Furthermore, the B block sequence is more important than the A block sequence in the transcription reaction. The mechanism and control of transcriptional initiation in the VARNA1 gene is similar to that in some tRNA genes, but differs from that in others.


Sujet(s)
Adenoviridae/génétique , Gènes viraux , ARN viral/génétique , Autoradiographie , Séquence nucléotidique , ADN viral/génétique , Mutation , Plasmides , Régions terminatrices (génétique) , Transcription génétique
20.
Proc Natl Acad Sci U S A ; 84(1): 179-83, 1987 Jan.
Article de Anglais | MEDLINE | ID: mdl-3467349

RÉSUMÉ

A cDNA clone encoding maize cytosolic superoxide dismutase 2 (SOD2) was isolated from a cDNA library constructed in pUC9 plasmids from size-selected poly(A)+ RNA. The library was screened with mixed synthetic oligode-oxynucleotide probes. The sequence of the probes was derived from the amino acid sequence from a region of the protein near the NH2 terminus. One positive clone contained an insertion of a 612-base-pair fragment. The amino acid sequence, deduced from the nucleotide sequence of the cDNA, revealed that the clone contained the coding region for all but the first of the 151 amino acids of the SOD2 protein. Additional 5' and 3' flanking sequences, absent on the pUC9 Sod2 clone, were obtained from a lambda gt11 clone isolated from a maize leaf library probed with the pUC9 Sod2 insert. Hybrid-selection translation assays also demonstrate that the cDNA clone contains Sod2 sequences.


Sujet(s)
Clonage moléculaire , ADN/métabolisme , Gènes , Plantes/génétique , Superoxide dismutase/génétique , Séquence d'acides aminés , Séquence nucléotidique , Plantes/enzymologie , ARN messager/génétique , ARN messager/isolement et purification , Zea mays/enzymologie , Zea mays/génétique
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