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Pharmacogenomics ; 21(8): 509-520, 2020 06.
Article de Anglais | MEDLINE | ID: mdl-32427048

RÉSUMÉ

Aim: GDF15 levels are a biomarker for metformin use. We performed the functional annotation of noncoding genome-wide association study (GWAS) SNPs for GDF15 levels and the Genotype-Tissue Expression (GTEx)-expression quantitative trait loci (eQTLs) for GDF15 expression within metformin-activated enhancers around GDF15. Materials & methods: These enhancers were identified using chromatin immunoprecipitation followed by sequencing data for active (H3K27ac) and silenced (H3K27me3) histone marks on human hepatocytes treated with metformin, Encyclopedia of DNA Elements data and cis-regulatory elements assignment tools. Results: The GWAS lead SNP rs888663, the SNP rs62122429 associated with GDF15 levels in the Outcome Reduction with Initial Glargine Intervention trial, and the GTEx-expression quantitative trait locus rs4808791 for GDF15 expression in whole blood are located in a metformin-activated enhancer upstream of GDF15 and tightly linked in Europeans and East Asians. Conclusion: Noncoding variation within a metformin-activated enhancer may increase GDF15 expression and help to predict GDF15 levels.


Sujet(s)
Étude d'association pangénomique/méthodes , Facteur-15 de croissance et de différenciation/biosynthèse , Facteur-15 de croissance et de différenciation/génétique , Metformine/pharmacologie , Polymorphisme de nucléotide simple/génétique , Lignée cellulaire , Hépatocytes/effets des médicaments et des substances chimiques , Hépatocytes/métabolisme , Humains , Hypoglycémiants/pharmacologie , Polymorphisme de nucléotide simple/effets des médicaments et des substances chimiques
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