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1.
Adv Protein Chem Struct Biol ; 85: 183-215, 2011.
Article de Anglais | MEDLINE | ID: mdl-21920324

RÉSUMÉ

Flexibility is the key magnitude to understand the variety of functions of proteins. Unfortunately, its experimental study is quite difficult, and in fact, most experimental procedures are designed to reduce flexibility and allow a better definition of the structure. Theoretical approaches have become then the alternative but face serious timescale problems, since many biologically relevant deformation movements happen in a timescale that is far beyond the possibility of current atomistic models. In this complex scenario, coarse-grained simulation methods have emerged as a powerful and inexpensive alternative. Along this chapter, we will review these coarse-grained methods, and explain their physical foundations and their range of applicability.


Sujet(s)
Protéines/composition chimique , Bases de données de protéines , Humains , Simulation de dynamique moléculaire , Méthode de Monte Carlo , Protéines/métabolisme
2.
Nutr Metab Cardiovasc Dis ; 21(4): 231-6, 2011 Apr.
Article de Anglais | MEDLINE | ID: mdl-20382511

RÉSUMÉ

BACKGROUND AND AIMS: To investigate the prevalence of high cardiovascular risk in the Spanish working population, and its distribution among different occupations and gender. METHODS AND RESULTS: Cross-sectional study of 309,955 workers (72.6% males, mean age 36.5 years, range 16-74 years), who underwent a routine medical check-up. Workers were classified as high, intermediate or low cardiovascular risk, according to the SCORE system. Workers with a relative risk greater than 4 were also considered as high-risk. The prevalence of high cardiovascular risk was 7.6% (95% CI 7.5-7.7) in males and 1.7% (95% CI 1.6-1.8) in females. After adjusting for age and gender, the prevalence of high cardiovascular risk was greater in workers from the Agriculture and Construction sectors than in those from Industry and Service sectors. The prevalence of high cardiovascular risk was higher in blue-collar than in white-collar occupations. CONCLUSIONS: A sizeable proportion of workers, especially blue-collar males, are at high cardiovascular risk. Knowledge of this risk for certain workers may serve as a basis for preventive strategies.


Sujet(s)
Maladies cardiovasculaires/épidémiologie , Professions , Adolescent , Adulte , Facteurs âges , Sujet âgé , Agriculture , Études transversales , Femelle , Humains , Mâle , Adulte d'âge moyen , Surveillance de la population , Prévalence , Prévention primaire , Appréciation des risques , Facteurs de risque , Facteurs sexuels , Facteurs socioéconomiques , Espagne/épidémiologie , Jeune adulte
3.
J Med Chem ; 48(23): 7103-12, 2005 Nov 17.
Article de Anglais | MEDLINE | ID: mdl-16279768

RÉSUMÉ

The 2,4-disubstituted thiadiazolidinones (TDZD) are described as the first ATP-noncompetitive GSK-3 inhibitors. Following an SAR study about TDZD, different structural modifications in the heterocyclic ring aimed to test the influence of each heteroatom on the biological study are here reported here. Various compounds such as hydantoins, dithiazolidindiones, rhodanines, maleimides, and triazoles were synthesized and screened as GSK-3 inhibitors. After an extensive SAR study among these different heterocyclic families, TDZDs have been revealed as a privileged scaffold for the selective inhibition of GSK-3. A CoMFA analysis was also performed highlighting the molecular electrostatic field interaction in the interaction of TDZDs with GSK-3. Moreover, first mapping studies indicate two binding modes which in turn might imply relevant differences in the mechanism that underly the inhibitory activity of TDZDs.


Sujet(s)
Glycogen Synthase Kinase 3/antagonistes et inhibiteurs , Glycogen Synthase Kinase 3/composition chimique , Relation quantitative structure-activité , Thiadiazoles/synthèse chimique , Sites de fixation , Hydantoïnes/synthèse chimique , Hydantoïnes/composition chimique , Maléimides/synthèse chimique , Maléimides/composition chimique , Modèles moléculaires , Liaison aux protéines , Rhodanine/analogues et dérivés , Rhodanine/synthèse chimique , Rhodanine/composition chimique , Relation structure-activité , Thiadiazoles/composition chimique
4.
J Neurol Neurosurg Psychiatry ; 72(2): 266-9, 2002 Feb.
Article de Anglais | MEDLINE | ID: mdl-11796781

RÉSUMÉ

A novel mutation (V89L) in the presenilin 1 (PSEN1) gene is described in a family with pathologically confirmed Alzheimer's disease. The mutation was identified in two affected members with early onset Alzheimer's disease characterised by early and marked behavioural disturbances. The mutation is located on the same side of the helix as other described mutations in the first transmembrane domain and its relation to other mutations in this helix suggests that they share a common pathogenic mechanism.


Sujet(s)
Maladie d'Alzheimer/génétique , Protéines membranaires/génétique , Troubles mentaux/génétique , Maladie d'Alzheimer/diagnostic , Maladie d'Alzheimer/anatomopathologie , Encéphale/anatomopathologie , Chromosomes humains de la paire 14 , Analyse de mutations d'ADN , Exons , Études de suivi , Humains , Mâle , Troubles mentaux/diagnostic , Troubles mentaux/anatomopathologie , Adulte d'âge moyen , Mutation/génétique , Tests neuropsychologiques , Pedigree , Préséniline-1
5.
Protein Eng ; 14(11): 911-7, 2001 Nov.
Article de Anglais | MEDLINE | ID: mdl-11742111

RÉSUMÉ

Protein engineering is a promising tool to obtain stable proteins. Comparison between homologous thermophilic and mesophilic enzymes from a given structural family can reveal structural features responsible for the enhanced stability of thermophilic proteins. Structures from pig heart cytosolic and Thermus flavus malate dehydrogenases (cMDH, Tf MDH), two proteins showing a 55% sequence homology, were compared with the aim of increasing cMDH stability using features from the Thermus flavus enzyme. Three potential salt bridges from Tf MDH were selected on the basis of their location in the protein (surface R176-D200, inter-subunit E57-K168 and intrasubunit R149-E275) and implemented on cMDH using site-directed mutagenesis. Mutants containing E275 were not produced in any detectable amount, which shows that the energy penalty of introducing a charge imbalance in a region that was not exposed to solvent was too unfavourable to allow proper folding of the protein. The salt bridge R149-E275, if formed, would not enhance stability enough to overcome this effect. The remaining mutants were expressed and active and no differences from wild-type other than stability were found. Of the mutants assayed, Q57E/L168K led to a stability increase of 0.4 kcal/mol, as determined by either guanidinium chloride denaturalization or thermal inactivation experiments. This results in a 15 degrees C shift in the optimal temperature, thus confirming that the inter-subunit salt bridge initially present in the T.flavus enzyme was formed in the cMDH structure and that the extra energy obtained is transformed into an increase in protein stability. These results indicate that the use of structural features of thermophilic enzymes, revealed by a detailed comparison of three-dimensional structures, is a valid strategy to improve the stability of mesophilic malate dehydrogenases.


Sujet(s)
Cytosol/enzymologie , Malate dehydrogenase/composition chimique , Catalyse , Guanidine/composition chimique , Cinétique , Modèles moléculaires , Mutagenèse dirigée , Mutation , NAD/composition chimique , Conformation des protéines , Ingénierie des protéines , Pliage des protéines , Protéines recombinantes/composition chimique , Sels , Température , Thermodynamique , Thermus/enzymologie
6.
Proteins ; 45(4): 428-37, 2001 Dec 01.
Article de Anglais | MEDLINE | ID: mdl-11746690

RÉSUMÉ

The latest version of the classical molecular interaction potential (CMIP) has the ability to predict the position of crystallographic waters in several proteins with great accuracy. This article analyzes the ability of the CMIP functional to improve the setup procedure of the molecular system in molecular dynamics (MD) simulations of proteins. To this end, the CMIP strategy is used to include both water molecules and counterions in different protein systems. The structural details of the configurations sampled from trajectories obtained using the CMIP setup procedure are compared with those obtained from trajectories derived from a standard equilibration process. The results show that standard MD simulations can lead to artifactual results, which are avoided using the CMIP setup procedure. Because the CMIP is easy to implement at a low computational cost, it can be very useful in obtaining reliable MD trajectories.


Sujet(s)
Modèles chimiques , Protéines/composition chimique , Acetylcholinesterase/composition chimique , Acetylcholinesterase/métabolisme , Animaux , Sites de fixation , Catalase/composition chimique , Catalase/métabolisme , Simulation numérique , Humains , Ions/composition chimique , Ions/métabolisme , Déplacement , Conformation des protéines , Protéines/métabolisme , Électricité statique , Thymidine kinase/composition chimique , Thymidine kinase/métabolisme , Eau/composition chimique , Eau/métabolisme
7.
Cancer Gene Ther ; 8(10): 740-50, 2001 Oct.
Article de Anglais | MEDLINE | ID: mdl-11687897

RÉSUMÉ

Pancreatic cancer has long carried poor prognosis. The development of new therapeutic approaches is particularly urgent. Inactivation of the tumor-suppressor gene p16(INK4a/CDKN2), a specific inhibitor of the cyclin-dependent kinases CDK4 and CDK6, is the most common genetic alteration in human pancreatic cancer, making it an ideal target for gene replacement. Here we transfected tumor cells using a recombinant adenovirus containing the wt-p16 cDNA (Ad5RSV-p16). The overexpression of p16 decreased cell proliferation in all four human pancreatic tumor cell lines (NP-9, NP-18, NP-29, and NP-31). However, G1 arrest and senescence were observed in only three. In contrast, the fourth (NP-18) showed a significant increase in apoptosis. This differential behavior may be related to the differences found in the expression level of E2F-1. Experiments on subcutaneous pancreatic xenografts demonstrated the effectiveness of p16 in the inhibition of pancreatic tumor growth in vivo. Taken together, our results indicate that approaches involving p16 replacement are promising in pancreatic cancer treatment.


Sujet(s)
Adénocarcinome/thérapie , Adenoviridae/génétique , Apoptose , Inhibiteur p16 de kinase cycline-dépendante/génétique , Thérapie génétique/méthodes , Tumeurs du pancréas/thérapie , Adénocarcinome/métabolisme , Adénocarcinome/anatomopathologie , Animaux , Technique de Western , Broxuridine , Cycle cellulaire/génétique , Vieillissement de la cellule , Vecteurs génétiques , Humains , Souris , Souris de lignée BALB C , Souris nude , Tumeurs du pancréas/métabolisme , Tumeurs du pancréas/anatomopathologie , Transfection , Cellules cancéreuses en culture , beta-Galactosidase/métabolisme
8.
J Am Chem Soc ; 123(39): 9665-72, 2001 Oct 03.
Article de Anglais | MEDLINE | ID: mdl-11572688

RÉSUMÉ

A variety of theoretical methods including classical molecular interaction potentials, classical molecular dynamics, and activated molecular dynamics have been used to analyze the substrate recognition mechanisms of peroxisomal catalase from Saccharomyces cerevisiae. Special attention is paid to the existence of channels connecting the heme group with the exterior of the protein. On the basis of these calculations a rationale is given for the unique catalytic properties of this enzyme, as well as for the change in enzyme efficiency related to key mutations. According to our calculations the water is expected to be a competitive inhibitor of the enzyme, blocking the access of hydrogen peroxide to the active site. The main channel is the preferred route for substrate access to the enzyme and shows a cooperative binding to hydrogen peroxide. However, the overall affinity of the main channel for H(2)O(2) is only slightly larger than that for H(2)O. Alternative channels connecting the heme group with the monomer interface and the NADP(H) binding site are detected. These secondary channels might be important for product release.


Sujet(s)
Catalase/métabolisme , Modèles chimiques , Catalase/composition chimique , Protéines fongiques/composition chimique , Protéines fongiques/métabolisme , Peroxyde d'hydrogène/métabolisme , Saccharomyces cerevisiae/enzymologie , Solutions , Spécificité du substrat , Thermodynamique
9.
J Membr Biol ; 180(3): 213-20, 2001 Apr 01.
Article de Anglais | MEDLINE | ID: mdl-11337893

RÉSUMÉ

In the small intestine, cationic amino acids are transported by y(+)-like and b(0,+)-like systems present in the luminal side of the epithelium. Here, we report the characterization of a b(0,+)-like system in the apical membrane of the chicken jejunum, and its properties as an amino acid exchanger. Analysis of the brush border membrane by Western blot points out the presence of rBAT (protein related to b0,+ amino acid transport system) in these membranes. A functional mechanism for amino acid exchange across this system was established by kinetic analysis measuring fluxes at varying substrate concentrations both in internal (in) and external (out) vesicle compartments. This intestinal b(0,+)-like system functions for L-arginine as an obligatory exchanger since its transport capacity increases 100-200 fold in exchange conditions, thus suggesting an important role in the intestinal absorption of cationic amino acids. The kinetic analysis of Argin efflux velocities is compatible with the formation of a ternary complex and excludes a model involving a ping-pong mechanism. The binding affinity of Argout is higher than that of Argin, suggesting a possible order of binding (Argout first) for the formation of the ternary complex during the exchange cycle. A model of double translocation pathways with alternating access is discussed.


Sujet(s)
Antigènes CD/métabolisme , Protéines de transport/métabolisme , Jéjunum/métabolisme , Systèmes de transport d'acides aminés , Animaux , Poulets , Antigènes CD98 , Cinétique , Microvillosités/métabolisme
10.
Pediatr Res ; 48(3): 315-22, 2000 Sep.
Article de Anglais | MEDLINE | ID: mdl-10960496

RÉSUMÉ

Glutaryl-CoA dehydrogenase (GCDH) deficiency causes glutaric aciduria type I (GA I), an inborn error of metabolism that is characterized clinically by dystonia and dyskinesia and pathologically by neural degeneration of the caudate and putamen. Studies of metabolite excretion allowed us to categorize 43 GA I Spanish patients into two groups: group 1 (26 patients), those presenting with high excretion of both glutarate and 3-hydroxyglutarate, and group 2 (17 patients), those who might not be detected by routine urine organic acid analysis because glutarate might be normal and 3-hydroxyglutarate only slightly higher than controls. Single-strand conformation polymorphism (SSCP) screening and sequence analysis of the 11 exons and the corresponding intron boundaries of the GCDH gene allowed us to identify 13 novel and 10 previously described mutations. The most frequent mutations in group 1 were A293T and R402W with an allele frequency of 30% and 28%, respectively. These two mutations were also found in group 2, but always in heterozygosity, in particular in combination with mutations V400M or R227P. Interestingly, mutations V400M and R227P were only found in group 2, and at least one of these mutations was found in 11 of 15 unrelated alleles, accounting together for 53% of the mutant alleles in group 2. Therefore, it seems clear that two genetically and biochemically distinct groups of patients exist. The severity of the clinical phenotype seems to be closely linked to the development of encephalopathic crises rather than to residual enzyme activity or genotype. Comparison of GCDH protein with other acyl-CoA dehydrogenases (whose x-ray crystal structure has been determined) reveals that most of the mutations identified in GCDH protein seem to affect folding and tetramerization, as has been described for a number of mutations affecting mitochondrial beta-oxidation acyl-CoA dehydrogenases.


Sujet(s)
Glutarates/urine , Maladies métaboliques/génétique , Maladies métaboliques/urine , Oxidoreductases acting on CH-CH group donors , Oxidoreductases/déficit , Oxidoreductases/génétique , Polymorphisme génétique , Allèles , Séquence d'acides aminés , Femelle , Fréquence d'allèle , Glutaryl-CoA dehydrogenase , Humains , Mâle , Données de séquences moléculaires , Mutation , Alignement de séquences , Espagne
11.
Cancer Gene Ther ; 7(4): 545-56, 2000 Apr.
Article de Anglais | MEDLINE | ID: mdl-10811472

RÉSUMÉ

Chemotherapy does not significantly improve prognosis in pancreatic cancer. New therapeutical approaches involving p53 gene replacement appear to be very encouraging due to the key role of p53 in the cell response to DNA damage. Here, we have evaluated the effectiveness of combining wild-type p53 (wt-p53) gene reintroduction (Ad5CMV-p53) and exposure to two genotoxic drugs, gemcitabine and cisplatin, in several human pancreatic cell lines. The efficiency of the combinations was clearly dependent upon timing, as assessed by cell survival determinations. Although wt-p53 transduction before drug treatment induced chemoresistance, p53 transduction in cells treated previously with gemcitabine increased cytotoxicity. Cell cycle profiles showed significant decreases in the percentage of cells in the S phase as a consequence of arrests provoked by the expression of exogenous p53, reducing the number of cells susceptible to the drug. The sensitivity of cells to cisplatin, which has a lower degree of S-phase specificity, was not modified as much by p53 gene replacement. In contrast, the recognition of the previous drug-induced DNA damage by the newly expressed wt-p53 elicited increases in sub-G1 populations, consistent with the annexin determinations and bax/bcl-2 ratios observed. Experiments on subcutaneous pancreatic xenografts corroborated the effectiveness of this approach in vivo. Thus, the combination of p53 transduction and chemotherapy, under a correct schedule of administration, appears to be a very promising therapy for human pancreatic cancer.


Sujet(s)
Adenoviridae/génétique , Antimétabolites antinéoplasiques/toxicité , Survie cellulaire/effets des médicaments et des substances chimiques , Cisplatine/toxicité , Désoxycytidine/analogues et dérivés , Gènes p53 , Apoptose/effets des médicaments et des substances chimiques , Cycle cellulaire/effets des médicaments et des substances chimiques , Altération de l'ADN , Désoxycytidine/toxicité , Relation dose-effet des médicaments , Vecteurs génétiques , Humains , Protéines de fusion recombinantes/biosynthèse , Transfection , Cellules cancéreuses en culture , beta-Galactosidase/analyse , beta-Galactosidase/génétique ,
12.
Neurology ; 52(3): 566-70, 1999 Feb.
Article de Anglais | MEDLINE | ID: mdl-10025789

RÉSUMÉ

OBJECTIVE: To characterize the mutation responsible for early-onset AD in a large Spanish kindred. BACKGROUND: Mutations in the presenilin 1 (PS1) gene have been identified and are known to be responsible for 18 to 50% of familial early-onset AD cases. METHODS: Patients were characterized clinically. The proband was further studied with EEG, CSF analysis, CT, brain biopsy, and histology. Other members were studied using EEG, CT, MRI, and SPECT. Genetic analysis of PS1 was performed using PCR amplification of PS1 exons and direct sequencing followed by PS1 modeling of the normal and mutant PS1 proteins. RESULTS: A novel mutation (Ser169Pro) in exon 6 of the PS1 gene was identified in different affected members. The Ser169Pro mutation is located at a site of the PS1 protein that is not a cluster of mutations. The mutation was not present in 100 general population controls and in 50 unrelated sporadic AD cases. The Ser169Pro mutation is associated with generalized myoclonic seizures several years after the initial symptoms of AD, a very early AD onset (< or =35 years), and a rapidly progressive cognitive decline. CONCLUSIONS: The absence of the PS1 Ser169Pro mutation in the general population and in sporadic AD cases together with its detection in the affected members of this kindred suggests that it is a pathogenic mutation. The serine to proline change predicts a kink in the alpha-helix of the transmembrane domain of the PS1 protein that could radically disrupt its normal structure. Further characterization of the effect of this mutation could help identify the function of the PS1 protein and the pathogenic mechanisms of AD.


Sujet(s)
Maladie d'Alzheimer/complications , Maladie d'Alzheimer/génétique , Épilepsies myocloniques/complications , Protéines membranaires/génétique , Séquence d'acides aminés , Exons , Données de séquences moléculaires , Mutation , Pedigree , Phénotype , Préséniline-1 , Espagne , Facteurs temps
13.
Eur J Biochem ; 259(1-2): 519-27, 1999 Jan.
Article de Anglais | MEDLINE | ID: mdl-9914535

RÉSUMÉ

To generate novel forms of metal-binding proteins, six mutant mouse metallothionein (MT) 1 fragments, in which a terminal cysteine residue was replaced by histidine, were expressed in Escherichia coli. The spectroscopic and analytical results showed that the alphaMT (C33H, C36H, C41H, C57H) and betaMT (C5H, C13H) mutant forms bound 4 and 3 Zn(II) atoms per molecule of protein to the nearest integer, even though in C41H and C5H, species of lower stoichiometry were also detected. In Cd(II) titrations, all the Zn(II) ions bound to the mutant proteins were displaced from the binding sites, giving rise to Cd-mutated MT forms with 4 and 3 Cd(II), respectively. However, although Cys-to-His substitutions maintained the binding capacity of the MT fragments, they caused structural changes with respect to the wild-type proteins. While C13H, C36H and C57H seem to contain Zn(II)-aggregates that are closely related to those of the wild-type proteins, only C41H and C57H gave rise to Cd(II)-aggregates similar to those of Cd4-alphaMT, where the His residue plays the role of the substituted Cys. Despite the structural implications of the Cys-to-His replacement, the dissociation constants showed no major decrease in the Cd-binding affinity in any of the mutants assayed compared with the wild-type.


Sujet(s)
Cadmium/métabolisme , Cystéine , Histidine , Métallothionéine/métabolisme , Zinc/métabolisme , Séquence d'acides aminés , Animaux , Sites de fixation , Dichroïsme circulaire , Cystéine/génétique , Escherichia coli/génétique , Histidine/génétique , Spectrométrie de masse , Métallothionéine/génétique , Souris , Données de séquences moléculaires , Mutagenèse dirigée , Fragments peptidiques/génétique , Fragments peptidiques/métabolisme , Conformation des protéines , Protéines recombinantes/métabolisme , Spectrophotométrie UV
14.
J Lipid Res ; 39(4): 821-33, 1998 Apr.
Article de Anglais | MEDLINE | ID: mdl-9555946

RÉSUMÉ

Certain missense substitutions on the human lipase (hLPL) gene produce mutated proteins that are retained in different compartments along the secretory pathway. The purpose of the present study was to elucidate whether the C-terminal domain of the hLPL molecule could be important for secretion. We constructed by site-directed mutagenesis three carboxy-terminal mutated (F388-->Stop, K428-->Stop and K441-->Stop) hLPL cDNAs that were expressed in COS1 cells. Immunoblotting of cell extracts showed that all three constructs led to similar levels of protein. Both wild type (WT) hLPL and the truncated K441-->Stop hLPL were secreted to the extracellular medium, and presented a similar intracellular distribution pattern as shown by immunofluorescence. Neither F388-->Stop nor K428-->Stop hLPL protein was detected in cell medium. Immunofluorescence experiments showed that both truncated hLPL were retained within an intracellular compartment, which became larger. Double immunofluorescence analysis using antibodies against LPL and antiprotein disulfide isomerase as a marker showed that the truncated K428-->Stop hLPL was retained within the rough endoplasmic reticulum. This truncated protein was not found in other compartments in the secretory pathway, such as Golgi complex and lysosomes, indicating that it did not exit the endoplasmic reticulum. Further analysis of the C-terminal region of the LPL molecular model showed both that F388-->Stop and K428-->Stop hLPL truncated proteins are highly hydrophobic. As retention of secretory proteins in the rough endoplasmic reticulum is a quality control mechanism of the secretory pathway, we conclude that the C-terminal domain of hLPL is critical for correct intracellular processing of the newly synthesized protein.


Sujet(s)
Réticulum endoplasmique rugueux/métabolisme , Lipoprotein lipase/métabolisme , Analyse de mutations d'ADN , Humains , Lipoprotein lipase/génétique , Mutagenèse dirigée , Maturation post-traductionnelle des protéines , Protéines recombinantes/métabolisme , Relation structure-activité
15.
Hum Mutat ; 11(5): 412, 1998.
Article de Anglais | MEDLINE | ID: mdl-10206681

RÉSUMÉ

A new unstable alpha-globin chain associated with alpha-thalassemia phenotype has been found in a Spanish patient. Molecular analysis of the alpha-globin gene complex using PCR and non-radioactive single-strand conformation analysis, allowed to identify a new mutation in the second exon of the alpha-globin gene. Direct sequencing of the abnormal fragment revealed a 3 bp deletion, which led to the loss of a single codon corresponding to a Lys (K) residue at position 60 or 61 DK60 or DK61. Theoretical structural analysis, performed by computational methods, indicated that the loss of an amino acid residue at this position disturbed the contact region between the B and E-helices, affecting the overall stability of the molecule. Therefore, the DK60 and DK61 results in a structurally abnormal alpha-globin chain, not previously described, named Hb Clinic, which leads to the alpha-thalassemia phenotype in the heterozygote patient. No abnormal hemoglobin was detected by standard electrophoretic procedures, suggesting that this alpha-globin chain variant is so unstable that it may be catabolized immediately after its synthesis. This mutation was confirmed by PCR using an allele specific primer.


Sujet(s)
Codon/génétique , Globines/génétique , Délétion de séquence/génétique , alpha-Thalassémie/génétique , Biologie informatique , Humains , Espagne
16.
Eur J Biochem ; 244(1): 203-12, 1997 Feb 15.
Article de Anglais | MEDLINE | ID: mdl-9063465

RÉSUMÉ

The steady-state kinetics of D-2-hydroxy-4-methylvalerate dehydrogenase have been studied at pH 8.0 by initial velocity, product inhibition, and dead-end inhibition techniques. The mechanism is rapid-equilibrium ordered in the NAD+ plus D-2-hydroxy-4-methylvalerate direction, and steady-state ordered in the other direction. In both cases coenzyme is the first substrate added and both the E-NADH-D-2-hydroxy-4-methylvalerate and E-NAD+-2-oxo-4-methylvalerate give rise to abortive complexes which cause excess substrate inhibition. Steady-state measurements show that the rate-limiting step in both directions at pH 8.0 is between formation of the enzyme-coenzyme-substrate ternary complex and the release of the first product of the reaction. Transient kinetics combined with primary kinetic deuterium isotope effects show that in the NADH-->NAD+ direction there is a slow, rate-limiting rearrangement of the E-NADH-oxoacid complex while hydride transfer is very fast. The release of NAD+ at pH 8.0 is 200-times faster than Kcat (NADH-->NAD+) whereas the release of NADH is only 5-times faster than Kcat (NAD+-->NADH). The pH dependence of NADH binding depends upon the presence of two ionizable residues with a pKa of about 5.9. The pH dependence of kinetic parameters is explained by a third ionizable residue with pKa values 7.2 (in the E-NADH complex) and < or = 6.4 (in the E-NAD+ complex) which may be the proton donor and acceptor for the chemical reaction. At pH 6.5 the mechanism changes in the NADH-->NAD+ direction to be partly limited by the chemical step with a measured primary kinetic isotope effect of 5.7 and partly by an only slightly faster dissociation of NAD+. In addition the inhibition by excess oxo-4-methylvalerate is more pronounced. The mechanism implies that removing the positive charges created by the two groups which control coenzyme affinity could both enhance the catalytic rate at pH 6.5 and diminish excess substrate inhibition to provide an enzyme better suited to the bulk synthesis of D-2-hydroxyacids.


Sujet(s)
Alcohol oxidoreductases/composition chimique , Alcohol oxidoreductases/métabolisme , Lactobacillus/enzymologie , Alcohol oxidoreductases/antagonistes et inhibiteurs , Sites de fixation , Fixation compétitive , Concentration en ions d'hydrogène , Cinétique , Lactobacillus/métabolisme , NAD/métabolisme , Spécificité du substrat
17.
Eur J Biochem ; 244(1): 213-9, 1997 Feb 15.
Article de Anglais | MEDLINE | ID: mdl-9063466

RÉSUMÉ

Five residues involved in catalysis and coenzyme binding have been identified in D-2-hydroxy-4-methylvalerate dehydrogenase from Lactobacillus delbrueckii subsp. bulgaricus by using biochemical and genetical methods. Enzyme inactivation with diethylpyrocarbonate indicated that a single histidine residue was involved in catalysis. Since H296 is the only conserved histidine in the whole family of NAD-dependent D-2-hydroxyacid dehydrogenases, we constructed the H296Q and H296S mutants and showed that their catalytic efficiencies were reduced 10(5)-fold compared with the wild-type enzyme. This low residual activity was shown to be insensitive to diethylpyrocarbonate. Taken together these data demonstrate that H296 is responsible for proton exchange in the redox reaction. Two acidic residues (D259 and E264) were candidates for maintaining H296 in the protonated state and their roles were examined by mutagenesis. The D259N and E264Q mutant enzymes both showed similar and large reductions in their Kcat/K(m) ratios (200-800-fold, depending on pH), indicating that either D259 or E264 (or both) could partner H296. The conserved R235 residue was a candidate for binding the alpha-carboxyl group of the substrate and it was changed to lysine. The R235K mutant showed a 104-fold reduced Kcat/K(m) due to both an increased K(m) and a reduced Kcat for 2-oxo-4-methylvalerate. Thus R235 plays a role in binding the substrate carboxylate similar to R171 in the L-lactate dehydrogenases. Finally, we constructed the H205Q mutant to test the role of this partially conserved histidine residue (in 10/13 enzymes of the family). This mutant enzyme displayed a 7.7-fold increased Kcat and a doubled catalytic efficiency at pH 5, was as sensitive to diethylpyrocarbonate as the wild-type but showed a sevenfold increased K(m) for NADH and a 100-fold increase in Kd for NADH together with 10-30-fold lower substrate inhibition. The transient kinetic behaviour of the H205Q mutant is as predicted from our previous study on the enzymatic mechanism of D-2-hydroxy-4-methylvalerate dehydrogenase which showed that coenzyme binding is highly pH dependent and indicated that release of the oxidised coenzyme is a significant component of the rate-limiting processes in catalysis at pH 6.5.


Sujet(s)
Alcohol oxidoreductases/génétique , Alcohol oxidoreductases/métabolisme , Lactobacillus/enzymologie , Lactobacillus/génétique , Alcohol oxidoreductases/effets des médicaments et des substances chimiques , Sites de fixation , Catalyse , Dicarbonate de diéthyle/pharmacologie , Activation enzymatique/effets des médicaments et des substances chimiques , Cinétique , Mutagenèse dirigée , NAD/métabolisme , Spécificité du substrat
18.
Surg Laparosc Endosc ; 6(4): 290-5, 1996 Aug.
Article de Anglais | MEDLINE | ID: mdl-8840451

RÉSUMÉ

The development of a postoperative lymphocele after renal transplantation is a well-described complication that occurs with relative frequency. Management options have previously included simple aspiration, percutaneous imaging-guided drainage with catheter placement, and operative marsupialization of the cyst into the peritoneal cavity. Because these collections are often multiloculated, catheter drainage may be of limited value, and the recurrence rate is unacceptably high. The operative approach is the most definitive method and is still considered the treatment of choice. This paper describes a laparoscopic approach to peritoneal fenestration and internal drainage of lymphoceles after renal transplant surgery and recommends that this technique be considered the primary mode of therapy for this complication.


Sujet(s)
Maladies du rein/chirurgie , Transplantation rénale/effets indésirables , Laparoscopie/méthodes , Lymphocèle/étiologie , Lymphocèle/chirurgie , Adulte , Marqueurs biologiques , Humains , Maladies du rein/étiologie , Mâle , Tomodensitométrie
19.
Am Surg ; 62(7): 594-6; discussion 596-7, 1996 Jul.
Article de Anglais | MEDLINE | ID: mdl-8651558

RÉSUMÉ

Laparoscopic colectomy has been associated with a shorter postoperative ileus when compared to open colectomy, although the mechanism is unclear. This study is designed to evaluate gastric emptying following open colectomies (OC) versus laparoscopic-aided colectomies (LAC) using serial serum acetaminophen levels (ACE), which correlate with gastric emptying. The study groups were limited to patients undergoing either right or left colectomy who received general anesthetic. Patients with diabetes mellitus or other colon resections were excluded. Postoperative analgesia was provided with intramuscular ketorolac and opioids for breakthrough pain. Patients received 500 mg ACE at 24 and 48 hours postoperatively, and ACE levels were measured 5, 10, 20, 30, 45, 60, 90, and 120 minutes following ingestion. The OC and LAC groups were matched in terms of operation performed. There were multiple carcinomas in the OC group, and none in the LAC group. Normal control values were also obtained for ACE absorption curves. Of all the time intervals tested at both 24 and 48 hours, there was only a single time interval (30 minutes at the 48-hour testing interval) in which there was a significant difference between the OC and LAC groups. In both the OC and LAC groups, there were multiple time intervals when the ACE levels were significantly different when compared to controls. The results indicate no significant difference in gastric emptying as measured by acetaminophen absorption in postoperative colectomy patients. Therefore, although laparoscopic patients have a clinically shorter postoperative ileus, the mechanism for this reduction appears unrelated to gastric emptying.


Sujet(s)
Colectomie/méthodes , Maladies du côlon/chirurgie , Vidange gastrique , Laparoscopie , Acétaminophène/sang , Acétaminophène/pharmacocinétique , Tumeurs du côlon/chirurgie , Diverticule du côlon/chirurgie , Vidange gastrique/physiologie , Humains , Période postopératoire , Études prospectives , Résultat thérapeutique
20.
J Biol Chem ; 271(30): 17761-70, 1996 Jul 26.
Article de Anglais | MEDLINE | ID: mdl-8663357

RÉSUMÉ

Mutations in the rBAT gene cause type I cystinuria, a common inherited aminoaciduria of cystine and dibasic amino acids due to their defective renal and intestinal reabsorption (Calonge, M. J., Gasparini, P., Chillarón, J., Chillón, M., Gallucci, M., Rousaud, F., Zelante, L., Testar, X., Dallapiccola, B., Di Silverio, F., Barceló, P., Estivill, X., Zorzano, A., Nunes, V., and Palacín, M. (1994) Nat. Genet. 6, 420-426; Calonge, M. J., Volipini, V., Bisceglia, L., Rousaud, F., De Sanctis, L., Beccia, E., Zelante, L., Testar, X., Zorzano, A., Estivill, X., Gasparini, P., Nunes, V., and Palacín, M.(1995) Proc. Natl. Acad. Sci. U. S. A. 92, 9667-9671). One important question that remains to be clarified is how the apparently non-concentrative system bo,+-like, associated with rBAT expression, participates in the active renal reabsorption of these amino acids. Several studies have demonstrated exchange of amino acids induced by rBAT in Xenopus oocytes. Here we offer evidence that system bo,+-like is an obligatory amino acid exchanger in oocytes and in the "renal proximal tubular" cell line OK. System bo, +-like showed a 1:1 stoichiometry of exchange, and the hetero-exchange dibasic (inward) with neutral (outward) amino acids were favored in oocytes. Obligatory exchange of amino acids via system bo,+-like fully explained the amino acid-induced current in rBAT-injected oocytes. Exchange via system bo,+-like is coupled enough to ensure a specific accumulation of substrates until the complete replacement of the internal oocyte substrates. Due to structural and functional analogies of the cell surface antigen 4F2hc to rBAT, we tested for amino acid exchange via system y+L-like. 4F2hc-injected oocytes accumulated substrates to a level higher than CAT1-injected oocytes (i.e. oocytes expressing system y+) and showed exchange of amino acids with the substrate specificity of system y+L and L-leucine-induced outward currents in the absence of extracellular sodium. In contrast to L-arginine, system y+L-like did not mediate measurable L-leucine efflux from the oocyte. We propose a role of systems bo,+-like and y+L-like in the renal reabsorption of cystine and dibasic amino acids that is based on their active tertiary transport mechanism and on the apical and basolateral localization of rBAT and 4F2hc, respectively, in the epithelial cells of the proximal tubule of the nephron.


Sujet(s)
Systèmes de transport d'acides aminés basiques , Acides aminés diaminés/métabolisme , Protéines de transport/métabolisme , Cystine/métabolisme , Tubules contournés proximaux/métabolisme , Glycoprotéines membranaires/métabolisme , Animaux , Transport biologique actif , Protéines de transport/génétique , Lignée cellulaire , Tubules contournés proximaux/cytologie , Cinétique , Glycoprotéines membranaires/génétique , Modèles biologiques , Ovocytes/métabolisme , Rats , Protéines recombinantes/métabolisme
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