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1.
Microb Ecol ; 81(4): 965-976, 2021 May.
Article de Anglais | MEDLINE | ID: mdl-33404820

RÉSUMÉ

Lichens host highly diverse microbial communities, with bacteria being one of the most explored groups in terms of their diversity and functioning. These bacteria could partly originate from symbiotic propagules developed by many lichens and, perhaps more commonly and depending on environmental conditions, from different sources of the surroundings. Using the narrowly distributed species Peltigera frigida as an object of study, we propose that bacterial communities in these lichens are different from those in their subjacent substrates, even if some taxa might be shared. Ten terricolous P. frigida lichens and their substrates were sampled from forested sites in the Coyhaique National Reserve, located in an understudied region in Chile. The mycobiont identity was confirmed using partial 28S and ITS sequences. Besides, 16S fragments revealed that mycobionts were associated with the same cyanobacterial haplotype. From both lichens and substrates, Illumina 16S amplicon sequencing was performed using primers that exclude cyanobacteria. In lichens, Proteobacteria was the most abundant phylum (37%), whereas soil substrates were dominated by Acidobacteriota (39%). At lower taxonomic levels, several bacterial groups differed in relative abundance among P. frigida lichens and their substrates, some of them being highly abundant in lichens but almost absent in substrates, like Sphingomonas (8% vs 0.2%), and others enriched in lichens, as an unassigned genus of Chitinophagaceae (10% vs 2%). These results reinforce the idea that lichens would carry some components of their microbiome when propagating, but they also could acquire part of their bacterial community from the substrates.


Sujet(s)
Ascomycota , Cyanobactéries , Lichens , Microbiote
2.
Mol Ecol ; 18(10): 2185-97, 2009 May.
Article de Anglais | MEDLINE | ID: mdl-19389164

RÉSUMÉ

Lowland tropical habitats harbour an unexplored genetic diversity of epiphyllous fungi. In the shade of rainforest understoreys, lichenized fungi are specialized to an ephemeral habitat where they produce little vegetative biomass and develop reproductive structures early. In a first population genetic study of epiphyllous lichen fungi, we analysed the intraspecific genetic diversity of five leaf-colonizing lichen mycobiont species. Sampling focused on a lowland perhumid forest plot in Costa Rica, with additional collections from other localities throughout the country. In all species we detected sympatric occurrence of highly diverged haplotypes. Haplotypes belonging to distinct clades in networks were also found on the same leaf, clearly indicating multiple independent colonization events on single leaves. Despite the unusually high genetic diversity of these leaf-colonizing tropical fungi, we did not detect pronounced spatial structure of the haplotype distribution between geographical regions. The observed patterns suggest that the diversity of foliicolous lichens could be much higher than expected, with several cryptic genetic lineages within each morphologically characterized species.


Sujet(s)
Variation génétique , Génétique des populations , Lichens/génétique , Costa Rica , ADN fongique/génétique , ADN mitochondrial/génétique , Champignons/génétique , Géographie , Haplotypes , Phylogenèse , Analyse de séquence d'ADN , Spécificité d'espèce , Arbres/microbiologie , Climat tropical
3.
FEMS Microbiol Lett ; 247(1): 1-6, 2005 Jun 01.
Article de Anglais | MEDLINE | ID: mdl-15927741

RÉSUMÉ

Fatty acid components, in both the free and combined form of the intact tropical lichen Teloschistes flavicans, and its isolated photobiont and mycobiont, were analyzed by GC-MS of derived methyl esters. Its rDNA analysis confirmed that the isolated cultured symbionts belong to the genera Trebouxia and Teloschistes, respectively. The fatty acid composition of the lichen did not correspond to those found in the isolated symbionts, suggesting that the fatty acid metabolism is markedly influenced by the symbiosis. Differences in the fatty acid composition in the lichen were observed during the summer (27 degrees C), when the main fatty acids were saturated and in the winter (22 degrees C) when an increase of unsaturated fatty acids occurred. Similar differences of composition were also observed for the cultured mycobiont at different temperatures. The increase in the unsaturation level at low temperatures would maintain the membrane fluidity. Our results are the first on the fatty acids of a tropical lichen and suggest that it is sensitive to small temperature variations, which influences its saturated and unsaturated fatty acid composition.


Sujet(s)
Acides gras/analyse , Lichens/physiologie , Acyltransferases , Ascomycota/composition chimique , Ascomycota/génétique , Ascomycota/croissance et développement , Brésil , Chlorophyta/composition chimique , Chlorophyta/génétique , Chlorophyta/croissance et développement , Chromatographie en phase gazeuse , Esters/analyse , Acides gras insaturés/analyse , Lichens/composition chimique , Lichens/isolement et purification , Spectrométrie de masse , Saisons , Symbiose , Température , Climat tropical
4.
Mycologia ; 96(5): 1159-62, 2004.
Article de Anglais | MEDLINE | ID: mdl-21148936

RÉSUMÉ

The new corticolous species Arthonia isidiata is described from the Pacific lowlands of Costa Rica. A. isidiata is characterized by minute, cylindrical to coralloid isidia produced on the thallus surface. The species currently is known only from the type locality in Corcovado National Park, where it occurs abundantly in the coastal rainforest around Sirena Biological Station.

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