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1.
BMC Gastroenterol ; 24(1): 54, 2024 Jan 30.
Article de Anglais | MEDLINE | ID: mdl-38291388

RÉSUMÉ

BACKGROUND & AIMS: With the increase in patients at risk of advanced liver disease due to the obesity epidemic, there will be a need for simple screening tools for advanced liver fibrosis. Soluble suppression of tumorigenicity 2 (sST2) is a serum biomarker for fibrotic processes. The aim of this study was to evaluate sST2 as marker for liver fibrosis in patients successfully treated for chronic hepatitis C. METHODS: 424 patients from the Swiss Hepatitis C Cohort Study were screened for inclusion in this post-hoc cohort study. Inclusion criteria were sustained virological response (SVR), available elastography (VCTE) and serum samples for biomarker analysis before and after treatment. For the validation of sST2, values were compared to VCTE, FIB-4 and APRI using Spearman's correlation and AUROC analyses. RESULTS: Data of 164 subjects were finally analyzed. Median sST2 values slightly increased with VCTE-derived fibrosis stages and remained stable after reaching SVR within the respective fibrosis stage, suggesting that sST2 is not influenced by liver inflammation. However, correlation of sST2 pre- and post-treatment with VCTE was fair (Spearman's rho = 0.39 and rho = 0.36). The area under the curve (AUROC) for sST2 in detecting VCTE-defined F4 fibrosis (vs. F0-F3) before therapy was 0.74 (95%CI 0.65-0.83), and 0.67(95%CI 0.56-0.78) for the discrimination of F3/F4 fibrosis vs. F0-F2. Adding sST2 to either APRI or FIB-4, respectively, increased diagnostic performance of both tests. CONCLUSIONS: sST2 can potentially identify patients with advanced fibrosis as a single serum marker and in combination with APRI and FIB-4.


Sujet(s)
Imagerie d'élasticité tissulaire , Hépatite C chronique , Humains , Études de cohortes , Aspartate aminotransferases , Cirrhose du foie , Foie/anatomopathologie , Hépatite C chronique/complications , Hépatite C chronique/traitement médicamenteux , Hépatite C chronique/anatomopathologie , Marqueurs biologiques
2.
Pathophysiology ; 30(3): 346-365, 2023 Aug 02.
Article de Anglais | MEDLINE | ID: mdl-37606389

RÉSUMÉ

Myc is one of the most well-known oncogenes driving tumorigenesis in a wide variety of tissues. From the brain to blood, its deregulation derails physiological pathways that grant the correct functioning of the cell. Its action is carried out at the gene expression level, where Myc governs basically every aspect of transcription. Indeed, in addition to its role as a canonical, chromatin-bound transcription factor, Myc rules RNA polymerase II (RNAPII) transcriptional pause-release, elongation and termination and mRNA capping. For this reason, it is evident that minimal perturbations of Myc function mirror malignant cell behavior and, consistently, a large body of literature mainly focuses on Myc malfunctioning. In healthy cells, Myc controls molecular mechanisms involved in pivotal functions, such as cell cycle (and proliferation thereof), apoptosis, metabolism and cell size, angiogenesis, differentiation and stem cell self-renewal. In this latter regard, Myc has been found to also regulate tissue regeneration, a hot topic in the research fields of aging and regenerative medicine. Indeed, Myc appears to have a role in wound healing, in peripheral nerves and in liver, pancreas and even heart recovery. Herein, we discuss the state of the art of Myc's role in tissue regeneration, giving an overview of its potent action beyond cancer.

3.
Int J Mol Sci ; 24(14)2023 Jul 10.
Article de Anglais | MEDLINE | ID: mdl-37511047

RÉSUMÉ

Glioblastoma multiforme (GBM) has high mortality and recurrence rates. Malignancy resilience is ascribed to Glioblastoma Stem Cells (GSCs), which are resistant to Temozolomide (TMZ), the gold standard for GBM post-surgical treatment. However, Nitric Oxide (NO) has demonstrated anti-cancer efficacy in GBM cells, but its potential impact on GSCs remains unexplored. Accordingly, we investigated the effects of NO, both alone and in combination with TMZ, on patient-derived GSCs. Experimentally selected concentrations of diethylenetriamine/NO adduct and TMZ were used through a time course up to 21 days of treatment, to evaluate GSC proliferation and death, functional recovery, and apoptosis. Immunofluorescence and Western blot analyses revealed treatment-induced effects in cell cycle and DNA damage occurrence and repair. Our results showed that NO impairs self-renewal, disrupts cell-cycle progression, and expands the quiescent cells' population. Consistently, NO triggered a significant but tolerated level of DNA damage, but not apoptosis. Interestingly, NO/TMZ cotreatment further inhibited cell cycle progression, augmented G0 cells, induced cell death, but also enhanced DNA damage repair activity. These findings suggest that, although NO administration does not eliminate GSCs, it stunts their proliferation, and makes cells susceptible to TMZ. The resulting cytostatic effect may potentially allow long-term control over the GSCs' subpopulation.


Sujet(s)
Tumeurs du cerveau , Glioblastome , Humains , Témozolomide/usage thérapeutique , Glioblastome/métabolisme , Monoxyde d'azote/métabolisme , Dacarbazine/usage thérapeutique , Lignée cellulaire tumorale , Prolifération cellulaire , Cycle cellulaire , Cellules souches/métabolisme , Tumeurs du cerveau/métabolisme , Résistance aux médicaments antinéoplasiques , Cellules souches tumorales/métabolisme , Antinéoplasiques alcoylants/pharmacologie , Antinéoplasiques alcoylants/usage thérapeutique
4.
Eur J Intern Med ; 114: 15-22, 2023 08.
Article de Anglais | MEDLINE | ID: mdl-37277249

RÉSUMÉ

Epigenetics is a rapidly growing field of biology that studies the changes in gene expression that are not due to alterations in the DNA sequence but rather the chemical modifications of DNA and its associated proteins. Epigenetic mechanisms can profoundly influence gene expression, cell differentiation, tissue development, and disease susceptibility. Understanding epigenetic changes is essential to elucidate the mechanisms underlying the increasingly recognized role of environmental and lifestyle factors in health and disease and the intergenerational transmission of phenotypes. Recent studies suggest epigenetics may be critical in various diseases, from cardiovascular disease and cancer to neurodevelopmental and neurodegenerative disorders. Epigenetic modifications are potentially reversible and could provide new therapeutic avenues for treating these diseases using epigenetic modulators. Moreover, epigenetics provide insight into disease pathogenesis and biomarkers for disease diagnosis and risk stratification. Nevertheless, epigenetic interventions have the potential for unintended consequences and may potentially lead to increased risks of unexpected outcomes, such as adverse drug reactions, developmental abnormalities, and cancer. Therefore, rigorous studies are essential to minimize the risks associated with epigenetic therapies and to develop safe and effective interventions for improving human health. This article provides a synthetic and historical view of the origin of epigenetics and some of the most relevant achievements.


Sujet(s)
Méthylation de l'ADN , Tumeurs , Humains , Épigenèse génétique , Tumeurs/génétique
5.
Biomedicines ; 11(2)2023 Jan 30.
Article de Anglais | MEDLINE | ID: mdl-36830948

RÉSUMÉ

MYC oncoprotein deregulation is a common catastrophic event in human cancer and limiting its activity restrains tumor development and maintenance, as clearly shown via Omomyc, an MYC-interfering 90 amino acid mini-protein. MYC is a multifunctional transcription factor that regulates many aspects of transcription by RNA polymerase II (RNAPII), such as transcription activation, pause release, and elongation. MYC directly associates with Protein Arginine Methyltransferase 5 (PRMT5), a protein that methylates a variety of targets, including RNAPII at the arginine residue R1810 (R1810me2s), crucial for proper transcription termination and splicing of transcripts. Therefore, we asked whether MYC controls termination as well, by affecting R1810me2S. We show that MYC overexpression strongly increases R1810me2s, while Omomyc, an MYC shRNA, or a PRMT5 inhibitor and siRNA counteract this phenomenon. Omomyc also impairs Serine 2 phosphorylation in the RNAPII carboxyterminal domain, a modification that sustains transcription elongation. ChIP-seq experiments show that Omomyc replaces MYC and reshapes RNAPII distribution, increasing occupancy at promoter and termination sites. It is unclear how this may affect gene expression. Transcriptomic analysis shows that transcripts pivotal to key signaling pathways are both up- or down-regulated by Omomyc, whereas genes directly controlled by MYC and belonging to a specific signature are strongly down-regulated. Overall, our data point to an MYC/PRMT5/RNAPII axis that controls termination via RNAPII symmetrical dimethylation and contributes to rewiring the expression of genes altered by MYC overexpression in cancer cells. It remains to be clarified which role this may have in tumor development.

6.
Int J Mol Sci ; 24(4)2023 Feb 20.
Article de Anglais | MEDLINE | ID: mdl-36835628

RÉSUMÉ

The concept of the Myc (c-myc, n-myc, l-myc) oncogene as a canonical, DNA-bound transcription factor has consistently changed over the past few years. Indeed, Myc controls gene expression programs at multiple levels: directly binding chromatin and recruiting transcriptional coregulators; modulating the activity of RNA polymerases (RNAPs); and drawing chromatin topology. Therefore, it is evident that Myc deregulation in cancer is a dramatic event. Glioblastoma multiforme (GBM) is the most lethal, still incurable, brain cancer in adults, and it is characterized in most cases by Myc deregulation. Metabolic rewiring typically occurs in cancer cells, and GBM undergoes profound metabolic changes to supply increased energy demand. In nontransformed cells, Myc tightly controls metabolic pathways to maintain cellular homeostasis. Consistently, in Myc-overexpressing cancer cells, including GBM cells, these highly controlled metabolic routes are affected by enhanced Myc activity and show substantial alterations. On the other hand, deregulated cancer metabolism impacts Myc expression and function, placing Myc at the intersection between metabolic pathway activation and gene expression. In this review paper, we summarize the available information on GBM metabolism with a specific focus on the control of the Myc oncogene that, in turn, rules the activation of metabolic signals, ensuring GBM growth.


Sujet(s)
Tumeurs du cerveau , Glioblastome , Adulte , Humains , Glioblastome/métabolisme , Protéines proto-oncogènes c-myc/métabolisme , Lignée cellulaire tumorale , Tumeurs du cerveau/métabolisme , Chromatine , Expression des gènes , Régulation de l'expression des gènes tumoraux , Prolifération cellulaire
7.
Life (Basel) ; 11(12)2021 Dec 17.
Article de Anglais | MEDLINE | ID: mdl-34947954

RÉSUMÉ

Nitric oxide (NO) is a diffusible signaling molecule produced by three isoforms of nitric oxide synthase, which release NO during the metabolism of the amino acid arginine. NO participates in pathophysiological responses of many different tissues, inducing concentration-dependent effect. Indeed, while low NO levels generally have protective effects, higher NO concentrations induce cytotoxic/cytostatic actions. In recent years, evidences have been accumulated unveiling S-nitrosylation as a major NO-dependent post-translational mechanism ruling gene expression. S-nitrosylation is a reversible, highly regulated phenomenon in which NO reacts with one or few specific cysteine residues of target proteins generating S-nitrosothiols. By inducing this chemical modification, NO might exert epigenetic regulation through direct effects on both DNA and histones as well as through indirect actions affecting the functions of transcription factors and transcriptional co-regulators. In this light, S-nitrosylation may also impact on cancer cell gene expression programs. Indeed, it affects different cell pathways and functions ranging from the impairment of DNA damage repair to the modulation of the activity of signal transduction molecules, oncogenes, tumor suppressors, and chromatin remodelers. Nitrosylation is therefore a versatile tool by which NO might control gene expression programs in health and disease.

8.
Cancers (Basel) ; 13(15)2021 Jul 30.
Article de Anglais | MEDLINE | ID: mdl-34359754

RÉSUMÉ

The impact of protein-coding genes on cancer onset and progression is a well-established paradigm in molecular oncology. Nevertheless, unveiling the contribution of the noncoding genes-including long noncoding RNAs (lncRNAs)-to tumorigenesis represents a great challenge for personalized medicine, since they (i) constitute the majority of the human genome, (ii) are essential and flexible regulators of gene expression and (iii) present all types of genomic alterations described for protein-coding genes. LncRNAs have been increasingly associated with cancer, their highly tissue- and cancer type-specific expression making them attractive candidates as both biomarkers and therapeutic targets. Medulloblastoma is one of the most common malignant pediatric brain tumors. Group 3 is the most aggressive subgroup, showing the highest rate of metastasis at diagnosis. Transcriptomics and reverse genetics approaches were combined to identify lncRNAs implicated in Group 3 Medulloblastoma biology. Here we present the first collection of lncRNAs dependent on the activity of the MYC oncogene, the major driver gene of Group 3 Medulloblastoma. We assessed the expression profile of selected lncRNAs in Group 3 primary tumors and functionally characterized these species. Overall, our data demonstrate the direct involvement of three lncRNAs in Medulloblastoma cancer cell phenotypes.

9.
Sci Rep ; 9(1): 15925, 2019 11 04.
Article de Anglais | MEDLINE | ID: mdl-31685892

RÉSUMÉ

Protein Arginine (R) methylation is the most common post-translational methylation in mammalian cells. Protein Arginine Methyltransferases (PRMT) 1 and 5 dimethylate their substrates on R residues, asymmetrically and symmetrically, respectively. They are ubiquitously expressed and play fundamental roles in tumour malignancies, including glioblastoma multiforme (GBM) which presents largely deregulated Myc activity. Previously, we demonstrated that PRMT5 associates with Myc in GBM cells, modulating, at least in part, its transcriptional properties. Here we show that Myc/PRMT5 protein complex includes PRMT1, in both HEK293T and glioblastoma stem cells (GSCs). We demonstrate that Myc is both asymmetrically and symmetrically dimethylated by PRMT1 and PRMT5, respectively, and that these modifications differentially regulate its stability. Moreover, we show that the ratio between symmetrically and asymmetrically dimethylated Myc changes in GSCs grown in stem versus differentiating conditions. Finally, both PRMT1 and PRMT5 activity modulate Myc binding at its specific target promoters. To our knowledge, this is the first work reporting R asymmetrical and symmetrical dimethylation as novel Myc post-translational modifications, with different functional properties. This opens a completely unexplored field of investigation in Myc biology and suggests symmetrically dimethylated Myc species as novel diagnostic and prognostic markers and druggable therapeutic targets for GBM.


Sujet(s)
Cellules souches tumorales/enzymologie , Protein-arginine N-methyltransferases/métabolisme , Protéines proto-oncogènes c-myc/métabolisme , Protéines de répression/métabolisme , Anticorps/immunologie , Points de contrôle du cycle cellulaire , Différenciation cellulaire , Lignée cellulaire tumorale , Glioblastome , Cellules HEK293 , Humains , Méthylation , Cellules souches tumorales/cytologie , Cellules souches tumorales/métabolisme , Régions promotrices (génétique) , Liaison aux protéines , Stabilité protéique , Protein-arginine N-methyltransferases/antagonistes et inhibiteurs , Protein-arginine N-methyltransferases/génétique , Protein-arginine N-methyltransferases/immunologie , Protéines proto-oncogènes c-myc/composition chimique , Protéines proto-oncogènes c-myc/génétique , Interférence par ARN , Petit ARN interférent/métabolisme , Protéines de répression/antagonistes et inhibiteurs , Protéines de répression/génétique , Protéines de répression/immunologie , Facteurs de transcription SOX-B1/génétique , Facteurs de transcription SOX-B1/métabolisme
10.
Brain ; 142(10): 2965-2978, 2019 10 01.
Article de Anglais | MEDLINE | ID: mdl-31412107

RÉSUMÉ

Basal ganglia are subcortical grey nuclei that play essential roles in controlling voluntary movements, cognition and emotion. While basal ganglia dysfunction is observed in many neurodegenerative or metabolic disorders, congenital malformations are rare. In particular, dysplastic basal ganglia are part of the malformative spectrum of tubulinopathies and X-linked lissencephaly with abnormal genitalia, but neurodevelopmental syndromes characterized by basal ganglia agenesis are not known to date. We ascertained two unrelated children (both female) presenting with spastic tetraparesis, severe generalized dystonia and intellectual impairment, sharing a unique brain malformation characterized by agenesis of putamina and globi pallidi, dysgenesis of the caudate nuclei, olfactory bulbs hypoplasia, and anomaly of the diencephalic-mesencephalic junction with abnormal corticospinal tract course. Whole-exome sequencing identified two novel homozygous variants, c.26C>A; p.(S9*) and c.752A>G; p.(Q251R) in the GSX2 gene, a member of the family of homeobox transcription factors, which are key regulators of embryonic development. GSX2 is highly expressed in neural progenitors of the lateral and median ganglionic eminences, two protrusions of the ventral telencephalon from which the basal ganglia and olfactory tubercles originate, where it promotes neurogenesis while negatively regulating oligodendrogenesis. The truncating variant resulted in complete loss of protein expression, while the missense variant affected a highly conserved residue of the homeobox domain, was consistently predicted as pathogenic by bioinformatic tools, resulted in reduced protein expression and caused impaired structural stability of the homeobox domain and weaker interaction with DNA according to molecular dynamic simulations. Moreover, the nuclear localization of the mutant protein in transfected cells was significantly reduced compared to the wild-type protein. Expression studies on both patients' fibroblasts demonstrated reduced expression of GSX2 itself, likely due to altered transcriptional self-regulation, as well as significant expression changes of related genes such as ASCL1 and PAX6. Whole transcriptome analysis revealed a global deregulation in genes implicated in apoptosis and immunity, two broad pathways known to be involved in brain development. This is the first report of the clinical phenotype and molecular basis associated to basal ganglia agenesis in humans.


Sujet(s)
Globus pallidus/croissance et développement , Protéines à homéodomaine/génétique , Putamen/croissance et développement , Adolescent , Adulte , Noyaux gris centraux/croissance et développement , Noyaux gris centraux/métabolisme , Noyaux gris centraux/physiopathologie , Différenciation cellulaire/génétique , Enfant d'âge préscolaire , Embryon de mammifère/métabolisme , Femelle , Globus pallidus/métabolisme , Globus pallidus/physiopathologie , Protéines à homéodomaine/métabolisme , Humains , Mâle , Mutation , Cellules souches neurales/métabolisme , Neurogenèse/physiologie , Neurones/métabolisme , Putamen/métabolisme , Putamen/physiopathologie , Télencéphale , Facteurs de transcription/génétique , /méthodes
11.
Oncotarget ; 9(10): 9325-9343, 2018 Feb 06.
Article de Anglais | MEDLINE | ID: mdl-29507693

RÉSUMÉ

Free serum copper correlates with tumor incidence and progression of human cancers, including hepatocellular carcinoma (HCC). Copper extracellular uptake is provided by the transporter CTR1, whose expression is regulated to avoid excessive intracellular copper entry. Inadequate copper serum concentration is involved in the pathogenesis of Non Alcoholic Fatty Liver Disease (NAFLD), which is becoming a major cause of liver damage progression and HCC incidence. Finally, MYC is over-expressed in most of HCCs and is a critical regulator of cellular growth, tumor invasion and metastasis. The purpose of our study was to understand if higher serum copper concentrations might be involved in the progression of NAFLD-cirrhosis toward-HCC. We investigated whether high exogenous copper levels sensitize liver cells to transformation and if it exists an interplay between copper-related proteins and MYC oncogene. NAFLD-cirrhotic patients were characterized by a statistical significant enhancement of serum copper levels, even more evident in HCC patients. We demonstrated that high extracellular copper concentrations increase cell growth, migration, and invasion of liver cancer cells by modulating MYC/CTR1 axis. We highlighted that MYC binds a specific region of the CTR1 promoter, regulating its transcription. Accordingly, CTR1 and MYC proteins expression were progressively up-regulated in liver tissues from NAFLD-cirrhotic to HCC patients. This work provides novel insights on the molecular mechanisms by which copper may favor the progression from cirrhosis to cancer. The Cu/MYC/CTR1 interplay opens a window to refine HCC diagnosis and design new combined therapies.

12.
Am J Hum Genet ; 101(4): 552-563, 2017 Oct 05.
Article de Anglais | MEDLINE | ID: mdl-28965847

RÉSUMÉ

The Sonic Hedgehog (SHH) pathway is a key signaling pathway orchestrating embryonic development, mainly of the CNS and limbs. In vertebrates, SHH signaling is mediated by the primary cilium, and genetic defects affecting either SHH pathway members or ciliary proteins cause a spectrum of developmental disorders. SUFU is the main negative regulator of the SHH pathway and is essential during development. Indeed, Sufu knock-out is lethal in mice, and recessive pathogenic variants of this gene have never been reported in humans. Through whole-exome sequencing in subjects with Joubert syndrome, we identified four children from two unrelated families carrying homozygous missense variants in SUFU. The children presented congenital ataxia and cerebellar vermis hypoplasia with elongated superior cerebellar peduncles (mild "molar tooth sign"), typical cranio-facial dysmorphisms (hypertelorism, depressed nasal bridge, frontal bossing), and postaxial polydactyly. Two siblings also showed polymicrogyria. Molecular dynamics simulation predicted random movements of the mutated residues, with loss of the native enveloping movement of the binding site around its ligand GLI3. Functional studies on cellular models and fibroblasts showed that both variants significantly reduced SUFU stability and its capacity to bind GLI3 and promote its cleavage into the repressor form GLI3R. In turn, this impaired SUFU-mediated repression of the SHH pathway, as shown by altered expression levels of several target genes. We demonstrate that germline hypomorphic variants of SUFU cause deregulation of SHH signaling, resulting in recessive developmental defects of the CNS and limbs which share features with both SHH-related disorders and ciliopathies.


Sujet(s)
Malformations multiples/génétique , Dysplasies osseuses/génétique , Cervelet/malformations , Malformations crâniofaciales/génétique , Malformations oculaires/génétique , Gènes récessifs , Protéines Hedgehog/métabolisme , Maladies kystiques rénales/génétique , Mutation faux-sens , Protéines de répression/génétique , Rétine/malformations , Malformations multiples/anatomopathologie , Dysplasies osseuses/anatomopathologie , Cellules cultivées , Cervelet/anatomopathologie , Enfant , Études de cohortes , Malformations crâniofaciales/anatomopathologie , Malformations oculaires/anatomopathologie , Femelle , Fibroblastes/métabolisme , Fibroblastes/anatomopathologie , Régulation de l'expression des gènes au cours du développement , Humains , Maladies kystiques rénales/anatomopathologie , Facteurs de transcription Krüppel-like/métabolisme , Mâle , Protéines de tissu nerveux/métabolisme , Protéines de répression/composition chimique , Protéines de répression/métabolisme , Rétine/anatomopathologie , Analyse de séquence d'ADN , Transduction du signal , Peau/métabolisme , Peau/anatomopathologie , Protéine à doigts de zinc Gli3
13.
EMBO Rep ; 17(12): 1872-1889, 2016 12.
Article de Anglais | MEDLINE | ID: mdl-27852622

RÉSUMÉ

MYC deregulation is common in human cancer and has a role in sustaining the aggressive cancer stem cell populations. MYC mediates a broad transcriptional response controlling normal biological programmes, but its activity is not clearly understood. We address MYC function in cancer stem cells through the inducible expression of Omomyc-a MYC-derived polypeptide interfering with MYC activity-taking as model the most lethal brain tumour, glioblastoma. Omomyc bridles the key cancer stemlike cell features and affects the tumour microenvironment, inhibiting angiogenesis. This occurs because Omomyc interferes with proper MYC localization and itself associates with the genome, with a preference for sites occupied by MYC This is accompanied by selective repression of master transcription factors for glioblastoma stemlike cell identity such as OLIG2, POU3F2, SOX2, upregulation of effectors of tumour suppression and differentiation such as ID4, MIAT, PTEN, and modulation of the expression of microRNAs that target molecules implicated in glioblastoma growth and invasion such as EGFR and ZEB1. Data support a novel view of MYC as a network stabilizer that strengthens the regulatory nodes of gene expression networks controlling cell phenotype and highlight Omomyc as model molecule for targeting cancer stem cells.


Sujet(s)
Régulation de l'expression des gènes tumoraux , Gènes myc , Glioblastome/génétique , Cellules souches tumorales/physiologie , Fragments peptidiques/génétique , Protéines proto-oncogènes c-myc/génétique , Facteurs de transcription/génétique , Inhibiteurs de l'angiogenèse , Apoptose , Facteurs de transcription à motif basique hélice-boucle-hélice/génétique , Différenciation cellulaire , Prolifération cellulaire , Récepteurs ErbB/génétique , Glioblastome/physiopathologie , Humains , Protéines d'inhibition de la différenciation/génétique , microARN/génétique , Protéines de tissu nerveux/génétique , Facteur de transcription-2 des oligodendrocytes , Liaison aux protéines , Activation de la transcription , Microenvironnement tumoral/génétique , Facteur de transcription Zeb1/génétique
14.
Oncotarget ; 7(22): 33257-71, 2016 May 31.
Article de Anglais | MEDLINE | ID: mdl-27119353

RÉSUMÉ

The c-MYC oncoprotein is a DNA binding transcription factor that enhances the expression of many active genes. c-MYC transcriptional signatures vary according to the transcriptional program defined in each cell type during differentiation. Little is known on the involvement of c-MYC in regulation of gene expression programs that are induced by extracellular cues such as a changing microenvironment. Here we demonstrate that inhibition of c-MYC in glioblastoma multiforme cells blunts hypoxia-dependent glycolytic reprogramming and mitochondria fragmentation in hypoxia. This happens because c-MYC inhibition alters the cell transcriptional response to hypoxia and finely tunes the expression of a subset of Hypoxia Inducible Factor 1-regulated genes. We also show that genes whose expression in hypoxia is affected by c-MYC inhibition are able to distinguish the Proneural subtype of glioblastoma multiforme, thus potentially providing a molecular signature for this class of tumors that are the least tractable among glioblastomas.


Sujet(s)
Antinéoplasiques/pharmacologie , Tumeurs du cerveau/traitement médicamenteux , Métabolisme énergétique/effets des médicaments et des substances chimiques , Glioblastome/traitement médicamenteux , Fragments peptidiques/pharmacologie , Protéines proto-oncogènes c-myc/antagonistes et inhibiteurs , Protéines proto-oncogènes c-myc/pharmacologie , Hypoxie tumorale , Microenvironnement tumoral , Sites de fixation , Tumeurs du cerveau/génétique , Tumeurs du cerveau/métabolisme , Tumeurs du cerveau/anatomopathologie , Régulation de l'expression des gènes tumoraux/effets des médicaments et des substances chimiques , Glioblastome/génétique , Glioblastome/métabolisme , Glioblastome/anatomopathologie , Glycolyse/effets des médicaments et des substances chimiques , Humains , Sous-unité alpha du facteur-1 induit par l'hypoxie/génétique , Sous-unité alpha du facteur-1 induit par l'hypoxie/métabolisme , Mitochondries/effets des médicaments et des substances chimiques , Mitochondries/métabolisme , Mitochondries/anatomopathologie , Régions promotrices (génétique) , Protéines proto-oncogènes c-myc/métabolisme , Transduction du signal/effets des médicaments et des substances chimiques , Facteurs temps , Transcription génétique/effets des médicaments et des substances chimiques
15.
Sci Rep ; 5: 15494, 2015 Nov 13.
Article de Anglais | MEDLINE | ID: mdl-26563484

RÉSUMÉ

The c-Myc protein is dysregulated in many human cancers and its function has not been fully elucitated yet. The c-Myc inhibitor Omomyc displays potent anticancer properties in animal models. It perturbs the c-Myc protein network, impairs c-Myc binding to the E-boxes, retaining transrepressive properties and inducing histone deacetylation. Here we have employed Omomyc to further analyse c-Myc activity at the epigenetic level. We show that both Myc and Omomyc stimulate histone H4 symmetric dimethylation of arginine (R) 3 (H4R3me2s), in human glioblastoma and HEK293T cells. Consistently, both associated with protein Arginine Methyltransferase 5 (PRMT5)--the catalyst of the reaction--and its co-factor Methylosome Protein 50 (MEP50). Confocal experiments showed that Omomyc co-localized with c-Myc, PRMT5 and H4R3me2s-enriched chromatin domains. Finally, interfering with PRMT5 activity impaired target gene activation by Myc whereas it restrained Omomyc-dependent repression. The identification of a histone-modifying complex associated with Omomyc represents the first demonstration of an active role of this miniprotein in modifying chromatin structure and adds new information regarding its action on c-Myc targets. More importantly, the observation that c-Myc may recruit PRMT5-MEP50, inducing H4R3 symmetric di-methylation, suggests previously unpredictable roles for c-Myc in gene expression regulation and new potential targets for therapy.


Sujet(s)
Histone/métabolisme , Fragments peptidiques/métabolisme , Protein-arginine N-methyltransferases/métabolisme , Protéines proto-oncogènes c-myc/métabolisme , Protéines adaptatrices de la transduction du signal/génétique , Protéines adaptatrices de la transduction du signal/métabolisme , Arginine/métabolisme , Technique de Western , Lignée cellulaire tumorale , Chromatine/génétique , Chromatine/métabolisme , Glioblastome/génétique , Glioblastome/métabolisme , Glioblastome/anatomopathologie , Cellules HEK293 , Humains , Méthylation , Microscopie confocale , Fragments peptidiques/génétique , Liaison aux protéines , Protein-arginine N-methyltransferases/génétique , Protéines proto-oncogènes c-myc/génétique , Interférence par ARN
16.
J Mol Cell Cardiol ; 83: 21-31, 2015 Jun.
Article de Anglais | MEDLINE | ID: mdl-25724723

RÉSUMÉ

DNA and histone methylation are well characterized epigenetic marks that are altered during the aging process. In aged cells and tissues, DNA cytosine tagging by methylation undergoes the so-called "epigenetic drift", in parallel with a change in the methylated histone profile. Despite the large body of knowledge regarding age-dependent epigenetic changes, there are few reports related to this topic in the cardiovascular field. This review summarizes age-dependent changes in DNA and histone methylation with a specific focus on age-related cardiovascular diseases (CVDs).


Sujet(s)
Vieillissement/métabolisme , Troubles du rythme cardiaque/métabolisme , Athérosclérose/métabolisme , Chromatine/métabolisme , Épigenèse génétique , Défaillance cardiaque/métabolisme , Vieillissement/génétique , Animaux , Troubles du rythme cardiaque/génétique , Troubles du rythme cardiaque/anatomopathologie , Athérosclérose/génétique , Athérosclérose/anatomopathologie , Chromatine/composition chimique , Méthylation de l'ADN , Défaillance cardiaque/génétique , Défaillance cardiaque/anatomopathologie , Histone/génétique , Histone/métabolisme , Humains , Myocarde/métabolisme , Myocarde/anatomopathologie , Protéines du groupe Polycomb/génétique , Protéines du groupe Polycomb/métabolisme , Transduction du signal
17.
Differentiation ; 87(3-4): 134-146, 2014.
Article de Anglais | MEDLINE | ID: mdl-24613594

RÉSUMÉ

The dysfunction of the primary cilium, a complex, evolutionarily conserved, organelle playing an important role in sensing and transducing cell signals, is the unifying pathogenetic mechanism of a growing number of diseases collectively termed "ciliopathies", typically characterized by multiorgan involvement. Developmental defects of the central nervous system (CNS) characterize a subset of ciliopathies showing clinical and genetic overlap, such as Joubert syndrome (JS) and Meckel syndrome (MS). Although several knock-out mice lacking a variety of ciliary proteins have shown the importance of primary cilia in the development of the brain and CNS-derived structures, developmental in vitro studies, extremely useful to unravel the role of primary cilia along the course of neural differentiation, are still missing. Mouse embryonic stem cells (mESCs) have been recently proven to mimic brain development, giving the unique opportunity to dissect the CNS differentiation process along its sequential steps. In the present study we show that mESCs express the ciliary proteins Meckelin and Jouberin in a developmentally-regulated manner, and that these proteins co-localize with acetylated tubulin labeled cilia located at the outer embryonic layer. Further, mESCs differentiating along the neuronal lineage activate the cilia-dependent sonic hedgehog signaling machinery, which is impaired in Meckelin knock-out cells but results unaffected in Jouberin-deficient mESCs. However, both lose the ability to acquire a neuronal phenotype. Altogether, these results demonstrate a pivotal role of Meckelin and Jouberin during embryonic neural specification and indicate mESCs as a suitable tool to investigate the developmental impact of ciliary proteins dysfunction.


Sujet(s)
Cellules souches embryonnaires/cytologie , Protéines membranaires/métabolisme , Cellules souches neurales/cytologie , Neurogenèse , Protéines proto-oncogènes/métabolisme , Protéines adaptatrices du transport vésiculaire , Animaux , Lignage cellulaire , Cellules cultivées , Cils vibratiles/métabolisme , Cellules souches embryonnaires/effets des médicaments et des substances chimiques , Cellules souches embryonnaires/métabolisme , Protéines Hedgehog/génétique , Protéines Hedgehog/métabolisme , Protéines membranaires/génétique , Souris , Cellules souches neurales/effets des médicaments et des substances chimiques , Cellules souches neurales/métabolisme , Phénotype , Protéines proto-oncogènes/génétique , Trétinoïne/pharmacologie , Tubuline/génétique , Tubuline/métabolisme
18.
Pediatr Neurol ; 50(4): 421-6, 2014 Apr.
Article de Anglais | MEDLINE | ID: mdl-24630287

RÉSUMÉ

BACKGROUND: Kohlschutter-Tonz syndrome (KTS; MIM 22675) is a rare autosomal recessive disorder characterized by intellectual impairment, spasticity, epilepsy, and amelogenesis imperfecta. We have recently identified the causative gene and mutation underlying KTS, namely, p.R157X, corresponding to ROGDI c.571C>T, which creates a premature stop codon in ROGDI homolog (Drosophila), a gene of unknown function, in KTS patients of Druze origin. PATIENTS: To better delineate the phenotype of KTS, 16 cases (eight female, eight male), from seven families (five kindreds) originating from a Druze village in Northern Israel, all homozygous for the same deleterious mutation, were investigated. Medical records were reviewed, and a detailed medical history was obtained by interview of parents. RESULTS: Age at onset between six and 12 months of age and the intensity of convulsions were variably manifested by affected sibs and mirror the progression of mental and motor deterioration. Amelogenesis imperfecta and deficient speech occur in all cases. By late adolescence and early twenties, individuals with KTS are bedridden, fed by a gastrostomy tube, spastic, and practically have no cognitive and language perception. CONCLUSIONS: KTS, a genetic disease heralded by convulsions, "yellow teeth," and severe mental impairment, allows for a clinical variability as regarding age of onset and severity of seizures that per se predict the speed of mental deterioration. In all cases, however, the morbid course of the disease is ultimately equally devastating by the twenties.


Sujet(s)
Amélogenèse imparfaite/génétique , Amélogenèse imparfaite/physiopathologie , Démence/génétique , Démence/physiopathologie , Épilepsie/génétique , Épilepsie/physiopathologie , Adolescent , Enfant , Enfant d'âge préscolaire , Famille , Femelle , Homozygote , Humains , Nourrisson , Israël , Mâle , Mutation , Pedigree , Jeune adulte
19.
Arterioscler Thromb Vasc Biol ; 32(10): 2435-43, 2012 Oct.
Article de Anglais | MEDLINE | ID: mdl-22859492

RÉSUMÉ

OBJECTIVE: To address the role of epigenetic enzymes in the process of arterial vasorelaxation and nitrate tolerance, in vitro and in vivo experiments were performed in the presence or absence of glyceryl trinitrate (GTN) or histone deacetylases/histone acetylases modulators. METHODS AND RESULTS: In vitro single GTN administration rapidly increased cGMP synthesis and protein N(ε)-lysine acetylation in rat smooth muscle cells, including myosin light chain and smooth muscle actin. This phenomenon determined a decrease in myosin light chain phosphorylation and actomyosin formation. These effects were abolished by prolonged exposure to GTN and rescued by treatment with trichostatin A. In vivo, adult male rats were treated for 72 hours with subcutaneous injections of GTN alone or in combination with the histone deacetylases inhibitors trichostatin A, suberoylanilide hydroxamic acid, MS-27-275, or valproic acid. Ex vivo experiments performed on aortic rings showed that the effect of tolerance was reversed by all proacetylation drugs, including the p300/CREB binding protein-associated factor activator pentadecylidenemalonate 1b (SPV106). Any response to GTN was abolished by anacardic acid, a potent histone acetylases inhibitor. CONCLUSIONS: This study establishes the following points: (1) GTN treatment increases histone acetylases activity; (2) GTN-activated p300/CREB binding protein-associated factor increases protein N(ε)-lysine acetylation; (3) N(ε)-lysine acetylation of contractile proteins influences GTN-dependent vascular response. Hence, combination of epigenetic drugs and nitroglycerin may be envisaged as a novel treatment strategy for coronary artery disease symptoms and other cardiovascular accidents of ischemic origin.


Sujet(s)
Actines/métabolisme , Aorte/physiologie , Lysine/métabolisme , Chaînes légères de myosine/métabolisme , Nitroglycérine/métabolisme , Vasodilatation/physiologie , Facteurs de transcription CBP-p300/métabolisme , Acétylation , Animaux , Aorte/effets des médicaments et des substances chimiques , Benzamides/pharmacologie , GMP cyclique/métabolisme , Inhibiteurs de désacétylase d'histone/pharmacologie , Acides hydroxamiques/pharmacologie , Injections sous-cutanées , Mâle , Modèles animaux , Contraction musculaire/effets des médicaments et des substances chimiques , Contraction musculaire/physiologie , Myocytes du muscle lisse/effets des médicaments et des substances chimiques , Myocytes du muscle lisse/physiologie , Nitroglycérine/administration et posologie , Nitroglycérine/pharmacologie , Pyridines/pharmacologie , Rats , Acide valproïque/pharmacologie , Facteurs de transcription CBP-p300/effets des médicaments et des substances chimiques
20.
Am J Hum Genet ; 90(4): 708-14, 2012 Apr 06.
Article de Anglais | MEDLINE | ID: mdl-22482807

RÉSUMÉ

Kohlschutter-Tonz syndrome (KTS) is a rare autosomal-recessive disorder of childhood onset, and it is characterized by global developmental delay, spasticity, epilepsy, and amelogenesis imperfecta. In 12 KTS-affected individuals from a Druze village in northern Israel, homozygosity mapping localized the gene linked to the disease to a 586,513 bp region (with a LOD score of 6.4) in chromosomal region 16p13.3. Sequencing of genes (from genomic DNA of an affected individual) in the linked region revealed chr16: 4,848,632 G>A, which corresponds to ROGDI c.469C>T (p.Arg157(∗)). The nonsense mutation was homozygous in all affected individuals, heterozygous in 10 of 100 unaffected individuals from the same Druze community, and absent from Druze controls from elsewhere. Wild-type ROGDI localizes to the nuclear envelope; ROGDI was not detectable in cells of affected individuals. All affected individuals suffered seizures, were unable to speak, and had amelogenesis imperfecta. However, age of onset and the severity of mental and motor handicaps and that of convulsions varied among affected individuals homozygous for the same nonsense allele.


Sujet(s)
Amélogenèse imparfaite/génétique , Codon non-sens , Démence/génétique , Épilepsie/génétique , Protéines membranaires/génétique , Protéines nucléaires/génétique , Adolescent , Âge de début , Animaux , Arabes/génétique , Séquence nucléotidique , Enfant , Enfant d'âge préscolaire , Cartographie chromosomique , Chromosomes humains de la paire 16/génétique , Drosophila/génétique , Femelle , Gènes récessifs , Homozygote , Humains , Israël , Lod score , Mâle , Données de séquences moléculaires , Indice de gravité de la maladie , Jeune adulte
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