Corrigendum: Comparative genomics of Bacillus cereus sensu lato spp. biocontrol strains in correlation to in-vitro phenotypes and plant pathogen antagonistic capacity.

[This corrects the article DOI: 10.3389/fmicb.2023.996287.].

The extracellular matrix protein TasA is a developmental cue that maintains a motile subpopulation within Bacillus subtilis biofilms.

In nature, bacteria form biofilms-differentiated multicellular communities attached to surfaces. Within these generally sessile biofilms, a subset of cells continues to express motility genes. We found that this subpopulation enabled Bacillus subtilis biofilms to expand on high-friction surfaces. The extracellular matrix (ECM) protein TasA was required for the expression of flagellar genes. In addition to its structural role as an adhesive fiber for cell attachment, TasA acted as a developmental signal stimulating a subset of biofilm cells to revert to a motile phenotype. Transcriptomic analysis revealed that TasA stimulated the expression of a specific subset of genes whose products promote motility and repress ECM production. Spontaneous suppressor mutations that restored motility in the absence of TasA revealed that activation of the biofilm-motility switch by the two-component system CssR/CssS antagonized the TasA-mediated reversion to motility in biofilm cells. Our results suggest that although mostly sessile, biofilms retain a degree of motility by actively maintaining a motile subpopulation.

The Plant Host Induces Antibiotic Production To Select the Most-Beneficial Colonizers.

Microbial ecosystems tightly associated with a eukaryotic host are widespread in nature. The genetic and metabolic networks of the eukaryotic hosts and the associated microbes have coevolved to form a symbiotic relationship. Both the Gram-positive Bacillus subtilis and the Gram-negative Serratia plymuthica can form biofilms on plant roots and thus can serve as a model system for the study of interspecies interactions in a host-associated ecosystem. We found that B. subtilis biofilms expand collectively and asymmetrically toward S. plymuthica, while expressing a nonribosomal antibiotic bacillaene and an extracellular protease. As a result, B. subtilis biofilms outcompeted S. plymuthica for successful colonization of the host. Strikingly, the plant host was able to enhance the efficiency of this killing by inducing bacillaene synthesis. In turn, B. subtilis biofilms increased the resistance of the plant host to pathogens. These results provide an example of how plant-bacterium symbiosis promotes the immune response of the plant host and the fitness of the associated bacteria.IMPORTANCE Our study sheds mechanistic light on how multicellular biofilm units compete to successfully colonize a eukaryote host, using B. subtilis microbial communities as our lens. The microbiota and its interactions with its host play various roles in the development and prevention of diseases. Using competing beneficial biofilms that are essential microbiota members on the plant host, we found that B. subtilis biofilms activate collective migration to capture their prey, followed by nonribosomal antibiotic synthesis. Plant hosts increase the efficiency of antibiotic production by B. subtilis biofilms, as they activate the synthesis of polyketides; therefore, our study provides evidence of a mechanism by which the host can indirectly select for beneficial microbiota members.

Biological neutralization and biosorption of dyes of alkaline textile industry wastewater.

The present work was aimed to secure biological neutralization and biosorption of dyes of an alkaline textile industrial effluent (ATIE) using an alkaliphilic bacterium, Enterococcus faecalis strain R-16 isolated from Gujarat coast. The isolate was capable and competent to bring down the pH of ATIE from 12.1 to 7.0 within 2 h in the presence of carbon and nitrogen sources. Carboxylic group concentration (CGC), NMR and FT-IR analysis revealed production of carboxylic acid as a result of neutralization. The unconventional carbon and nitrogen sources like Madhuca indica flowers or sugar cane bagasse supported the growth of bacterium with effective neutralization and biosorption of dyes from ATIE. The process proved to be efficient, inexpensive and eco-friendly as compared to conventional chemical neutralization process.

Effect of unconventional carbon sources on biosurfactant production and its application in bioremediation.

The potential of an alkaliphilic bacterium Klebsiella sp. strain RJ-03, to utilize different unconventional carbon sources for the production of biosurfactant was evaluated. The biosurfactant produced using corn powder, potato peel powder, Madhuca indica and sugarcane bagasse containing medium, exhibited significantly higher viscosity and maximum reduction in surface tension as compared to other substrates. Among several carbon substrates tested, production of biosurfactant was found to be the highest with corn powder (15.40 ± 0.21 g/l) as compared to others. The comparative chemical characterization of purified biosurfactant was done using advance analytical tools such as NMR, FT-IR, SEM, GPC, MALDI TOF-TOF MS, GC-MS, TG and DSC. Analyses indicated variation in the functional groups, monosaccharide composition, molecular mass, thermostability. Higher yield with cheaper raw materials, noteworthy stress tolerance of CP-biosurfactant toward pH and salt as well as compatibility with chemical surfactants and detergents revealed its potential for commercialization and application in bioremediation.

Production and structural characterization of biosurfactant produced by an alkaliphilic bacterium, Klebsiella sp.: evaluation of different carbon sources.

The potential of an alkaliphilic bacterium Klebsiella sp. strain RJ-03, to utilize different carbon sources for the production of an extracellular biosurfactant was evaluated. Among the several carbon substrates tested, production of the crude biosurfactant was found to be the highest with starch (10.1±0.11g/L) followed by sucrose (5.1±0.11g/L), xylose (3.25±0.08g/L), galactose (3.1±0.16g/L) glucose (2.75±0.11g/L) and fructose (2.62±0.07g/L). The crude biosurfactant production was done using starch, sucrose, xylose, galactose and glucose containing medium, that exhibited significantly high viscosity, emulsification activity and maximum reduction in surface tension as compared to those obtained from fructose and maltose. The carbon source has significant effect on the quantity as well as the quality of biosurfactant production. The chemical characteristics of purified biosurfactant was compared by NMR, FT-IR, SEM, GPC, MALDI TOF-TOF MS, GC-MS, TG and DSC analysis, indicating variation in the functional groups, bonds, elements, monosaccharide composition, molecular mass and thermo stability.

Cholesterol assimilation and biotransformation by Lactobacillus helveticus.

Lactobacillus helveticus, grown at 37°C in MRS medium supplemented with 3 mM cholesterol, assimilated all the cholesterol in 42 h having 68 U mg(-1) of intracellular cholesterol oxidase activity. The strain transformed 1 g cholesterol to 0.05 g of androsta-1, 4-diene-3, 17-dione and 0.04 g of androst-4-ene-3, 17 dione within 48 h at 37°C with extracellular cholesterol oxidase activity at 12 U mg(-1) and intracellular oxidase at 0.5 U mg(-1).

Physicochemical characterization of biosurfactant and its potential to remove oil from soil and cotton cloth.

An alkaliphilic bacterium, Klebsiella sp. strain RJ-03, produced a biosurfactant, which showed low viscosity with pseudoplastic rheological behavior and exhibited emulsification activity with oils and hydrocarbons. The biosurfactant has excellent oil removing efficiency as compared to chemical surfactants. The isolated biosurfactant has compatibility with detergents and enhanced oil removing efficiency from soil and cotton cloths. It comprised of sugar, uronic acid, protein and sulfate. GC-MS analysis confirmed the presence of six monosaccharides (w/w), glucose (6.65%), galactose (23.98%), rhamnose (14.94%), mannose (17.54%), fucose (9.47%) and 6-O-Me-galactose (1.4%). It is a high molecular weight, thermostable biopolymer showing degradation above 300 °C. Positive ion reflector mode of MALDI TOF-TOF MS analysis revealed series of low and mid range mass peaks (m/z) corresponding to mono-, di-, tri- and oligo-saccharides content. The NMR, FT-IR, EDX-SEM, AFM and PSD analysis confirmed the presence of functional groups, bonds, elements and particle size respectively.

Biological neutralization of chlor-alkali industry wastewater.

The present work reports biological neutralization of chlor-alkali industrial effluent by an alkaliphilic bacterium, isolated from the Gujarat coast, which was identified as Enterococcus faecium strain R-5 on the basis of morphological, biochemical and partial 16S rRNA gene sequencing. The isolate was capable of bringing down the pH of waste water from 12.0 to 7.0 within 3 h in the presence of carbon and nitrogen sources, with simultaneous reduction in total dissolved solutes (TDS) up to 19-22%. This bacterium produced carboxylic acid, as revealed by FT-IR analysis, which facilitated neutralization of alkaline effluent. The presence of unconventional raw materials viz. Madhuca indica flowers or sugar cane bagasse as carbon and nitrogen sources could effectively neutralize alkaline effluent and thus making the bioremediation process economically viable. The time required for neutralization varied with size of inoculum. To the best of our knowledge, this is the first report on biological neutralization of a chlor-alkali industrial effluent.