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1.
Clin Transl Oncol ; 24(6): 1086-1099, 2022 Jun.
Article de Anglais | MEDLINE | ID: mdl-35066758

RÉSUMÉ

PURPOSE: To explore the effect of circ_0000135/miR-140-3p/PDZ domain containing 1 (PDZK1) on the occurrence and development of cervical cancer. METHODS: Clinical data were collected to verify circ_0000135/miR-140-3p/PDZK1 expression in cervical cancer. mRNA expressions of circ_0000135 and miR-140-3p were detected by real-time quantitative PCR. Correlation between circ_0000135 and miR-140-3p/miR-140-3p and PDZK1 was analyzed in vitro. Protein expression detection in cells was conducted by Western blot; while cell proliferation, invasion and cycle distribution by CCK8 assay, Transwell chamber assay and flow cytometry, respectively. Rescue and animal experiment were performed to verify the effect of circ_0000135/miR-140-3p/PDZK1 on cervical cancer. RESULTS: circ_0000135 and PDZK1 expressions were increased, while those of miR-140-3p were decreased in cervical cancer tissues and cells (both P < 0.05). sh-circ_0000135 group had decreased cell viability, arrested cells in G0/G1 phase, decreased CyclinD1 expression, inhibited cell migration and invasion; sh-circ_0000135 group showed reduced tumor volume, weight, and lower Ki67 expression (all P < 0.05). circ_0000135 had conserved target of miR-140-3p. There was a direct interaction between circ_0000135 and miR-140-3p. miR-140-3p might have direct interaction with PDZK1. sh-circ_0000135 and/or miR-140-3p treatment showed obviously decreased PDZK1 expression, decreased cell activity, arrested cells in G0/G1 phase, downregulated cell migration and invasion; sh-circ_0000135 and/or miR-140-3p mimic treatment showed obviously decreased tumor volume, tumor weight, and Ki67 expression (all P < 0.05). CONCLUSION: circ_0000135 may play an anti-tumor role on the progression of cervical cancer by sponging miR-140-3p to suppress the expression of PDZK1, providing a promising therapeutic target.


Sujet(s)
Protéines membranaires , microARN , ARN circulaire , Tumeurs du col de l'utérus , Animaux , Lignée cellulaire tumorale , Prolifération cellulaire/génétique , Femelle , Humains , Antigène KI-67/métabolisme , Protéines membranaires/génétique , Protéines membranaires/métabolisme , microARN/génétique , microARN/métabolisme , ARN circulaire/génétique , ARN circulaire/métabolisme , Tumeurs du col de l'utérus/génétique , Tumeurs du col de l'utérus/métabolisme , Tumeurs du col de l'utérus/anatomopathologie
2.
Braz J Med Biol Res ; 51(3): 1-7, 2018 Jan 23.
Article de Anglais | MEDLINE | ID: mdl-29513878

RÉSUMÉ

Breast cancer is the most common cause of cancer among women in most countries (WHO). Ovarian hormone disorder is thought to be associated with breast tumorigenesis. The present study investigated the effects of estrogen and progesterone administration on cell proliferation and underlying mechanisms in breast cancer MCF-7 cells. It was found that a single administration of estradiol (E2) or progesterone increased MCF-7 cell viability in a dose-dependent manner and promoted cell cycle progression by increasing the percentage of cells in the G2/M phase. A combination of E2 and progesterone led to a stronger effect than single treatment. Moreover, cyclin G1 was up-regulated by E2 and/or progesterone in MCF-7 cells. After knockdown of cyclin G1 in MCF-7 cells using a specific shRNA, estradiol- and progesterone-mediated cell viability and clonogenic ability were significantly limited. Additionally, estradiol- and progesterone-promoted cell accumulation in the G2/M phase was reversed after knockdown of cyclin G1. These data indicated that estrogen and progesterone promoted breast cancer cell proliferation by inducing the expression of cyclin G1. Our data indicated that novel therapeutics against cyclin G1 are promising for the treatment of estrogen- and progesterone-mediated breast cancer progression.


Sujet(s)
Tumeurs du sein/anatomopathologie , Prolifération cellulaire/effets des médicaments et des substances chimiques , Cycline G1/métabolisme , Oestrogènes/pharmacologie , Progestérone/pharmacologie , Technique de Western , Tumeurs du sein/métabolisme , Survie cellulaire , Femelle , Humains , Cellules MCF-7/effets des médicaments et des substances chimiques , Réaction de polymérisation en chaine en temps réel
3.
Genet Mol Res ; 16(1)2017 Feb 16.
Article de Anglais | MEDLINE | ID: mdl-28218776

RÉSUMÉ

Interleukin-8 (IL-8) is a mediator of inflammation and plays an important role in regulating immune responses. To date, several studies have tested the association between IL-8 gene polymorphisms and development of coronary artery disease (CAD), but their results have proved to be inconsistent. We conducted an investigation to assess the relationship between the IL-8 -251A/T (rs4073) sequence variant and CAD in a Chinese population. Between April 2013 and January 2015, 217 patients with coronary angiography-confirmed CAD were enrolled in our study, along with 245 control subjects. IL-8 -251A/T genotyping was performed using a polymerase chain reaction-restriction fragment length polymorphism assay. A chi-square test revealed that IL-8 -251A/T genotype distributions significantly differed between CAD patients and control subjects (chi-square = 8.29, P < 0.02). Moreover, multiple-logistic regression analysis showed that individuals carrying TA [odds ratio (OR) = 1.59, 95% confidence interval (CI) = 1.01-2.57] and AA (OR = 2.06, 95%CI = 1.21-3.52) genotypes were at increased risk of CAD compared to those with the TT genotype. Under dominant (OR = 1.75, 95%CI = 1.13-2.73) and recessive (OR = 1.54, 95%CI = 1.02-2.37) genetic models, the IL-8 -251A/T polymorphism also significantly correlated with CAD. In conclusion, our results suggest that this variant is an independent risk factor for CAD development under codominant, dominant, and recessive models.


Sujet(s)
Asiatiques/génétique , Maladie des artères coronaires/génétique , Interleukine-8/génétique , Polymorphisme de nucléotide simple , Études cas-témoins , Femelle , Fréquence d'allèle , Études d'associations génétiques , Prédisposition génétique à une maladie , Humains , Mâle
4.
Genet Mol Res ; 15(3)2016 Sep 02.
Article de Anglais | MEDLINE | ID: mdl-27706699

RÉSUMÉ

Mesenchymal stem cells (MSCs) have pleiotropic immuno-modulatory effects and pro-angiogenic ability, leading to the presumption that MSCs may be involved in the pathogenesis of many inflammatory or autoimmune disorders, including psoriasis. In a previous study, we reported the specific gene expression profile of dermal MSCs from psoriasis. Inflammation- and angiogenesis-related genes, such as lipopolysaccharide-induced tumor necrosis factor-alpha transcription factor (LITAF), dual-specificity protein phosphatase 1 (DUSP1), vascular endothelial growth factor α (VEGFα), and insulin-like growth factor-binding protein-5 (IGFBP5), are abnormally expressed in psoriatic dermal MSCs. As a key regulator of gene expression, miRNA are involved in a wide variety of biological processes; in fact, several miRNAs have been implicated in the development and progression of inflammatory or autoimmune disorders. In this study, we compared the miRNA expression profiles of dermal MSCs from patients with psoriasis to those in MSCs from normal individuals by microarray, and found that the pro-inflammatory miRNA miR-155 was significantly overexpressed in psoriatic MSCs (2.44 fold, P < 0.001). Additionally, the expression of miR-155 target gene TAB2 (8.47 ± 1.55 vs 6.38 ± 2.10, P < 0.01,) and the downstream gene iNOS (5.26 ± 2.58 vs 3.73 ± 1.89, P < 0.05) was found to be inhibited in psoriatic dermal MSCs by real-time PCR. Therefore, we speculated that the elevation in miR-155 levels may be an indicator of, or a key regulatory pathway in, the pathogenesis of psoriasis, resulting in functionally impaired dermal MSCs.


Sujet(s)
Protéines adaptatrices de la transduction du signal/génétique , Derme/métabolisme , Régulation de l'expression des gènes , Cellules souches mésenchymateuses/métabolisme , microARN/génétique , Psoriasis/génétique , Protéines adaptatrices de la transduction du signal/métabolisme , Adulte , Études cas-témoins , Derme/anatomopathologie , Femelle , Humains , Mâle , Cellules souches mésenchymateuses/anatomopathologie , microARN/métabolisme , Adulte d'âge moyen , Nitric oxide synthase type II/génétique , Nitric oxide synthase type II/métabolisme , Séquençage par oligonucléotides en batterie , Psoriasis/métabolisme , Psoriasis/anatomopathologie , Réaction de polymérisation en chaine en temps réel , Indice de gravité de la maladie , Transduction du signal
5.
Genet Mol Res ; 15(2)2016 04 25.
Article de Anglais | MEDLINE | ID: mdl-27173231

RÉSUMÉ

Bone fractures or bones subjected to open conduction and internal fixation are easily infected by bacteria; bacterial lipopolysaccharide (LPS) has been recognized as an important pathogenic factor affecting bone fracture healing. Therefore, the effect of LPS on bone metabolism is relevant for bone healing. In this study, we investigated the effect of LPS on the expression of Toll-like receptor (TLR)-4 (an LPS receptor) by using real-time quantitative PCR and western blotting. We also examined the regulatory role of LPS in osteoblast differentiation by measuring the ALP activity, matrix mineralization, and ALP, OCN, and Runx2 mRNA (essential factors affecting osteoblast differentiation) expression in LPS-treated mouse osteoblast MC3T3-E1 cells. We also evaluated the effect of TLR-4 on LPS-mediated inhibition of osteoblast differentiation using RNA interference. LPS promotes TLR-4 mRNA and protein expression in MC3T3-E1 cells (P < 0.05, P < 0.01 or P < 0.001), and inhibits osteoblast differentiation by downregulating matrix mineralization and ALP activity (P < 0.05, P < 0.01 or P < 0.001), and suppressing the expression ALP, OCN, and Runx2 mRNA in MC3T3-E1 cells (P < 0.05 or P < 0.01). Conversely, RNAi-mediated TLR-4 knockdown abrogates the LPS-mediated inhibition of osteoblast differentiation (P < 0.05 or P < 0.01). In summary, LPS was shown to inhibit osteoblast differentiation by suppressing the expression of ALP, OCN, and Runx2 in a TLR-4-dependent manner. The results of this study may provide insights into the signal pathway of LPS-induced bone loss or delayed bone fracture healing.


Sujet(s)
Différenciation cellulaire/effets des médicaments et des substances chimiques , Fractures osseuses/génétique , Ostéoblastes/métabolisme , Récepteur de type Toll-4/biosynthèse , Protéines adaptatrices de la transduction du signal/biosynthèse , Animaux , Lignée cellulaire , Sous-unité alpha 1 du facteur CBF/biosynthèse , Fractures osseuses/traitement médicamenteux , Fractures osseuses/anatomopathologie , Régulation de l'expression des gènes/effets des médicaments et des substances chimiques , Humains , Lipopolysaccharides/administration et posologie , Protéines membranaires/biosynthèse , Souris , Ostéoblastes/anatomopathologie , Ostéogenèse/effets des médicaments et des substances chimiques , ARN messager/génétique , Transduction du signal/effets des médicaments et des substances chimiques , Récepteur de type Toll-4/génétique
6.
Genet Mol Res ; 15(2)2016 Apr 26.
Article de Anglais | MEDLINE | ID: mdl-27173258

RÉSUMÉ

The Anyi tile-like gray chicken is a Chinese indigenous breed with a gray dilution phenotype, having gray feathers, comb, skin, shanks, and beak, which is valuable for genetic research on pigmentation. However, the genetic basis of the gray dilution phenotype remains unknown. The objective of this study was to investigate the genetic basis of the gray dilution phenotype in the Anyi tile-like gray chicken. We found that all Anyi tile-like gray chickens tested in this study carried at least one E allele, which is responsible for the appearance of black feathers, and some of them carried the FM allele, which is responsible for the black skin phenotype. A single nucleotide polymorphism (C.1909A>G) was identified within the melanophilin (MLPH) gene and was significantly associated with the gray dilution phenotype. Our findings suggest that the E and FM alleles act together to cause the development of the "five-black" phenotype (black feather, comb, skin, shank, and beak), whereas the MLPH mutation results in defective melanosome transport, leading to the development of the "five-gray" phenotype.


Sujet(s)
Mutation , Phénotype , Récepteur de la mélanocortine de type 1/génétique , Pigmentation de la peau/génétique , Animaux , Poulets , Plumes/métabolisme , Polymorphisme de nucléotide simple
7.
Genet Mol Res ; 14(4): 16444-9, 2015 Dec 09.
Article de Anglais | MEDLINE | ID: mdl-26662442

RÉSUMÉ

Pteroceltis tatarinowii (Ulmaceae) is a scientifically and economically important temperate deciduous tree that is endemic to China. In the present study, 12 P. tatarinowii polymorphic microsatellite loci were developed using the tailed primer-M13-simple sequence repeats (TP-M13-SSR) biotin-capture method. The number of alleles per locus ranged from 2 to 10, with an average of 6.58. The observed and expected heterozygosity ranged from 0.208 to 0.958 and from 0.198 to 0.858, with average values of 0.703 and 0.710, respectively. The markers isolated in this study represent a favorable tool for further analyses of the population genetic structure and evolutionary history of this relic tree.


Sujet(s)
Répétitions microsatellites , Polymorphisme génétique , Ulmaceae/génétique , Locus génétiques , Génétique des populations , Motifs nucléotidiques
8.
Genet Mol Res ; 14(4): 15793-801, 2015 Dec 02.
Article de Anglais | MEDLINE | ID: mdl-26634547

RÉSUMÉ

Psoriasis is a common chronic relapsing inflammatory skin disease, in which mesenchymal stem cells (MSCs) have been hypothesized to play an important role in abnormal localized inflammation and vascular proliferation observed in skin lesions. Previous studies have revealed abnormal gene expression patterns, DNA methylation status, and cytokine secretion of MSCs in psoriatic skin lesions, as well as some gene expression abnormalities related to inflammation and angiogenesis. We further verified the gene and protein expressions of inflammation-related lipopolysaccharide-induced tumor necrosis factor-alpha transcription factor (LITAF), dual-specificity protein phosphatase 1 (DUSP1), and angiogenesis-related hematopoietically expressed homeobox (HHEX) in MSCs derived from the skin lesions of psoriasis patients. The gene expression of LITAF, DUSP1, and HHEX in dermal MSCs was measured at the mRNA level using reverse transcription-polymerase chain reaction and the corresponding protein expression levels were analyzed by western blotting analysis. The gene and protein expression levels of LITAF, HHEX, and DUSP1 in dermal MSCs were significantly lower in psoriasis patients compared to controls. Amplification and western blotting results were consistent with our previously reported gene chip data. Our results suggest that dermal MSCs in psoriatic skin lesions may be involved in the development, progression, and regulation of localized inflammatory abnormalities by reducing the expression of LITAF, HHEX, and DUSP1, which are related to inflammation and angiogenesis.


Sujet(s)
Dual Specificity Phosphatase 1/génétique , Expression des gènes , Protéines à homéodomaine/génétique , Cellules souches mésenchymateuses/métabolisme , Protéines nucléaires/génétique , Psoriasis/génétique , Facteurs de transcription/génétique , Adulte , Études cas-témoins , Dual Specificity Phosphatase 1/métabolisme , Femelle , Protéines à homéodomaine/métabolisme , Humains , Mâle , Adulte d'âge moyen , Protéines nucléaires/métabolisme , Psoriasis/diagnostic , ARN messager/génétique , ARN messager/métabolisme , Indice de gravité de la maladie , Facteurs de transcription/métabolisme , Jeune adulte
9.
Genet Mol Res ; 14(4): 12894-902, 2015 Oct 21.
Article de Anglais | MEDLINE | ID: mdl-26505442

RÉSUMÉ

The aim of this study was to breed a target genotype variety based on the identified chalkiness marker-QTL (quantitative trait locus) associations in rice. First, a permanent mapping population of rice that consisted of 525 recombinant inbred lines (RILs), which were derived from Zhenshan 97/Minghui 63, was used to identify QTLs with additive effects for rice quantitative traits and percentage of grain chalkiness (PGC). Subsequently, based on the identified QTLs in rice, the molecular marker 68923-PGC was selected to screen the low chalkiness rice line. Then, using the integration of molecular marker breeding and traditional breeding, we analyzed the genotype and phenotype of inbred lines from 525 RILs; we identified one rice variety with particularly high yields, good taste, and broad adaptability. The new variety was temporarily named RIL10, which was a high quality, high yield, and broadly adaptable variety, and it is predominantly a feature that has contributed to its geographical adaptability, which would be planted from 35°E to 18°E in Chinain China, where 2/3 of rice production occurs. RIL10 was a marker-assisted selection breeding achievement for producing a high quality, high yield, and broadly adaptable rice variety.


Sujet(s)
Oryza/génétique , Locus de caractère quantitatif/génétique , Sélection , Génotype , Oryza/physiologie
10.
Genet Mol Res ; 14(3): 9739-44, 2015 Aug 19.
Article de Anglais | MEDLINE | ID: mdl-26345906

RÉSUMÉ

This study observed the local tissue homogenates in rabbits with third lumbar vertebral transverse foramen syndrome and explored the mechanism of acupotomylysis in local tissue revascularization. Thirty Japanese white rabbits were randomly divided into the following 5 groups of 6 rabbits each: normal, model, acupotomy, electroacupuncture (EA), and acupotomy-EA groups. All except the normal group were comprised of animal models of third lumbar vertebral transverse foramen syndrome prepared by embedding sponge in the left third lumbar transverse process. The rabbits in the acupotomy and EA groups underwent bilateral acupotomylysis intervention; those in the acupotomy-EA group underwent acupotomylysis and EA interventions. On the 28th day after modeling, the double-antibody ELISA was used to detect b-FGF and CD34 levels in the serum and homogenates of a muscle tissue sample from the left side of the third lumbar transverse process. The b-FGF levels in local muscle homogenates were significantly higher in the modeled rabbits than in the normal rabbits (P < 0.01), and the CD34 levels in the modeled group were significantly lower than in the normal group (P < 0.01). The b-FGF and CD34 levels in the EA, acutopomy, and acutopomy-EA groups were significantly lower than those in the modeled group (P < 0.01); the CD34 levels were significantly higher in the acupotomy-EA group than in the model group (P < 0.05); and the differences among the EA, acupotomy, and acupotomy-EA groups were not significant (P > 0.05). In conclusion, acupotomylysis regulates the levels of b-FGF and CD34 levels in serum and muscle tissue as well as local tissue revascularization.


Sujet(s)
Antigènes CD34/métabolisme , Électroacupuncture , Facteur de croissance fibroblastique de type 2/métabolisme , Vertèbres lombales/anatomopathologie , Animaux , Muscles du dos/vascularisation , Muscles du dos/métabolisme , Néovascularisation physiologique , Lapins , Syndrome
11.
Genet Mol Res ; 14(3): 10490-9, 2015 Sep 08.
Article de Anglais | MEDLINE | ID: mdl-26400280

RÉSUMÉ

We evaluated changes in BAX and BCL2 expression levels after spinal cord ischemia/reperfusion injury (SCII) and hypothermia during operations in rats. Eighty rats were divided into four groups: Group A (N = 20, 18°C); Group B (N = 20, 28°C); Group C (N = 20, room temperature); and Group D (N = 20, sham operation control). Spinal cord ischemia was induced for 90 min. Hypothermia was induced 15 min before, and maintained during ischemia, followed by heating to normothermia for 30 min after reperfusion. Motor function of the lower limbs was evaluated according to the Tarlov score at 72 and 168 h. For each rat, spinal cord samples were taken at 6, 24, 72 h, and 1 week to evaluate the histopathological changes, neuronal apoptosis, and BAX and BCL2 expression levels. Compared with normothermia, hypothermia significantly improved hind limb function; Group B achieved a higher score than Group A. Group D showed no neurologic deficiency, while the other groups showed various degrees. Group C exhibited greater neuronal apoptosis, higher BAX expression, but lower BCL2 expression than the other groups. Compared with Group A, BAX was expressed less and BCL2 more in Group B, and there was less apoptosis in Group B. Hypothermia preserves hind limb motor function and reduces neuronal death, thereby protecting rats from SCII. The spinal cord may be protected from SCII by inhibition of BAX and activation of BCL2. However, deep hypothermia may inhibit the expression of BCL2, resulting in a worse outcome than mild hypothermia.


Sujet(s)
Protéines proto-oncogènes c-bcl-2/génétique , Lésion d'ischémie-reperfusion/génétique , Lésion d'ischémie-reperfusion/prévention et contrôle , Ischémie de la moelle épinière/génétique , Moelle spinale/métabolisme , Protéine Bax/génétique , Animaux , Apoptose/génétique , Basse température , Régulation de l'expression des gènes , Membre pelvien/vascularisation , Membre pelvien/physiopathologie , Mâle , Activité motrice/physiologie , Neurones/métabolisme , Neurones/anatomopathologie , Protéines proto-oncogènes c-bcl-2/métabolisme , Rats , Rat Sprague-Dawley , Lésion d'ischémie-reperfusion/métabolisme , Lésion d'ischémie-reperfusion/physiopathologie , Moelle spinale/anatomopathologie , Ischémie de la moelle épinière/métabolisme , Ischémie de la moelle épinière/anatomopathologie , Ischémie de la moelle épinière/physiopathologie , Protéine Bax/métabolisme
12.
Genet Mol Res ; 14(2): 3694-701, 2015 Apr 17.
Article de Anglais | MEDLINE | ID: mdl-25966138

RÉSUMÉ

We aimed to study the feasibility of a comfortable and secure intubation achieved with the Disposcope endoscope or Macintosh laryngoscope when glottis viewing is difficult. Forty adults scheduled for elective surgery under general anesthesia, in whom glottis viewing was difficult with the Macintosh laryngoscope (classified as Cormack-Lehane Grade III or IV), were randomized into 2 groups (N = 20 each): Disposcope endoscope (Group D) and Macintosh laryngoscope (Group M). We recorded the successful glottis viewing rate; intubation time; successful intubation rate; incidence of systolic blood pressure (SBP) ≥140 mmHg and heart rate (HR) ≥90 bpm from the beginning of intubation to 5 min after intubation; and postoperative sore throat and hoarseness. Successful glottis viewing rate and successful first intubation rate were higher in Group D than in Group M (P < 0.05); the number of intubations taking >3 min and with SBP ≥140 mmHg and HR ≥90 bpm were less in Group D (P < 0.05). The visual analogue scale of postoperative sore throat 1 day after extubation was higher in Group M than in Group D (P < 0.05). No significant differences were found in other indices (P > 0.05). Better stability of hemodynamics, less intubation time, higher successful first intubation rate, and fewer incidences of postoperative sore throat were achieved in Group D than in Group M. Thus, comfortable and secure intubation can be achieved using the Disposcope endoscope in patients in whom glottis viewing is difficult.


Sujet(s)
Glotte/anatomopathologie , Intubation/instrumentation , Laryngoscopes , Adulte , Sujet âgé , Études de faisabilité , Femelle , Enrouement , Humains , Mâle , Adulte d'âge moyen , Satisfaction des patients
13.
Genet Mol Res ; 14(2): 4125-32, 2015 Apr 27.
Article de Anglais | MEDLINE | ID: mdl-25966184

RÉSUMÉ

The purpose of this study was to identify the clinical features and mutations in the fibrillin-1 gene (FBN1) in a large Chinese family with autosomal dominant Marfan syndrome (MFS). Seventeen members from a Chinese family of 4 generations were included in the study. All members underwent complete ophthalmic examination. Molecular genetic analysis was performed on all subjects. All exons of FBN1 were amplified by polymerase chain reaction, sequenced, and the sequences were compared with a reference database. Variations were evaluated in family members as well as 100 normal controls. Changes in structure and function of the protein induced by amino acid variation were predicted by bioinformatic analysis. Ectopia lentis, dolichostenomelia, arachnodactyly, and tall stature were present in all patients diagnosed with MFS. The novel heterozygous missense mutation c.2243 T>G (p.C781W) in exon 19 of FBN1 was identified in all 5 patients, but not in other family members or 100 normal controls. This mutation caused an amino acid substitution of cysteine to tryptophan at position 781 (p.C781W) of the FBN1 protein. This mutation occurred in a highly conserved region and may cause structural and functional changes in the protein according to our bioinformatic analysis. Our results suggest that the novel mutation C781W of FBN1 is responsible for the pathogenesis of MFS in this pedigree.


Sujet(s)
Asiatiques/génétique , Ectopie du cristallin/génétique , Fibrilline-1/génétique , Syndrome de Marfan/génétique , Adolescent , Adulte , Sujet âgé , Substitution d'acide aminé , Séquence nucléotidique , Enfant , Analyse de mutations d'ADN , Exons/génétique , Femelle , Fibrillines , Génotype , Hétérozygote , Humains , Mâle , Adulte d'âge moyen , Mutation faux-sens , Analyse de séquence d'ADN
14.
Genet Mol Res ; 14(1): 2785-92, 2015 Mar 31.
Article de Anglais | MEDLINE | ID: mdl-25867427

RÉSUMÉ

MicroRNAs (miRNAs) are a class of non-coding RNAs that play important roles in posttranscriptional regulation of target genes. miRNAs are involved in multiple biological processes by degrading targeted mRNAs or repressing mRNA translation in various organisms. Their conserved nature in various organisms makes them a good source of new miRNA discovery using comparative genomic approaches. In the present study, conserved Nile tilapia (Oreochromis niloticus) miRNAs were identified using a bioinformatic strategy based on expressed sequence tag and genome survey sequence databases. A total of 21 new miRNAs were detected and were found to belong to 17 families. Using mature miRNA sequences as queries, potential targets for tilapia miRNAs were predicted using a local BLAST program and the miRanda software. Target proteins identified using miRanda and BLAST analyses included transcription factors and molecules important in metabolism, transportation, immunity, stress-related activity, growth, and development. These miRNAs and their targets in tilapia may increase the understanding of the role of miRNAs in regulating the growth and development of tilapia.


Sujet(s)
Cichlides/génétique , Biologie informatique/méthodes , Protéines de poisson/génétique , microARN/génétique , Animaux , Séquence nucléotidique , Séquence conservée/génétique , Bases de données d'acides nucléiques , Étiquettes de séquences exprimées , ARN messager/génétique , Logiciel
15.
Genet Mol Res ; 14(1): 961-70, 2015 Feb 03.
Article de Anglais | MEDLINE | ID: mdl-25730034

RÉSUMÉ

We collected data regarding 340 disease resistance quantitative trait loci (QTLs) from the maize genomic database (MaizeGDB). We constructed an integrated linkage map and analyzed this map by using the BioMercator 2.1 software with IBM2 2008 Neighbors genetic linkage map as a reference. We used a meta-analysis method to identify five "consensus" synthetic resistance QTLs located on maize chromosomes 1, 3, 6, and 10, with map intervals of 5.14, 9.00, 28.50, 1.73, and 33.34 cM, respectively. The gene and marker sequences within the five "consensus" QTLs were downloaded from the MaizeGDB website. We identified eight resistance gene analogs (RGAs), through comparison of these sequences with the resistance genes of other members of Poaceae by using the online BLASTx software. On the basis of comparative mapping between the maize genetic map and the rice physical map, 54 rice and 44 maize resistance genes were projected onto the maize IBM2 2008 Neighbors genetic linkage map by using a synteny conservation approach. Additionally, 15 resistance genes in the "consensus" QTL regions were found in two "consensus" QTLs on chromosomes 3 and 6; these resistance genes included rp3, scmv2, wsm2, RG3, RG16, RG36, RG51, RG53, scmv1, mdm1, RG5, RG8, RG10, RG14, and RG29. Our results provide valuable information for fine-mapping QTL, gene cloning, and molecular breeding for resistance in maize.


Sujet(s)
Résistance à la maladie/génétique , Locus de caractère quantitatif/génétique , Synténie/génétique , Zea mays/génétique , Cartographie chromosomique , Chromosomes de plante/génétique , Liaison génétique , Oryza/génétique , Maladies des plantes/génétique
16.
Genet Mol Res ; 13(4): 10398-403, 2014 Dec 12.
Article de Anglais | MEDLINE | ID: mdl-25511023

RÉSUMÉ

The prognostic role of S100A4 in gastric cancer is still under debate. The present meta-analysis aimed to evaluate the relationship between S10A4 levels and the prognosis of gastric cancer. We performed a meta-analysis of published studies assessing the relationship between S100A4 and gastric cancer prognosis. We used the Revman 5.0 software to perform literature retrieval, article selection, data collection, and statistical analysis. A fixed-effect model was used to pool the hazard ratio (HR) and 95% confidence intervals (95%CI). A total of 7 eligible studies that included 1257 gastric cancer patients were analyzed. We did not find a prognostic value for S100A4 in gastric cancer (HR = 1.48, 95%CI = 0.77 to 2.82, P = 0.24). In conclusion, the present study indicated that S100A4 expression level is not a prognostic factor for gastric cancer.


Sujet(s)
Marqueurs biologiques tumoraux/biosynthèse , Protéines S100/biosynthèse , Tumeurs de l'estomac/génétique , Marqueurs biologiques tumoraux/génétique , Régulation de l'expression des gènes tumoraux , Humains , Pronostic , Protéine S100A4 liant le calcium , Protéines S100/génétique , Tumeurs de l'estomac/anatomopathologie
17.
Genet Mol Res ; 13(1): 926-37, 2014 Feb 19.
Article de Anglais | MEDLINE | ID: mdl-24634113

RÉSUMÉ

Phosphorus plays a pivotal role in plant growth and development. In this study, we isolated and characterized GmPTF1, a basic helix-loop-helix (bHLH) transcription factor (TF) gene from soybean (Glycine max) with tolerance to inorganic phosphate (Pi) starvation. Alignment analysis indicated that GmPTF1 and other reported bHLH TFs share significant similarity in the region of the bHLH domain. As with OsPTF1 and other homologous Pi starvation-related bHLH TFs (His-5, Glu-9, Arg-12, and Arg-13), all recognition motifs for the G-box (CACGTG) were present in the GmPTF1 domain. Prokaryotic expression in Escherichia coli strain BL21 (DE3) plysS showed that a novel 40-kDa polypeptide was expressed when cells containing GmPTF1 were induced. The subcellular localization in cells from onion epidermis and Arabidopsis roots demonstrated that the GmPTF1 protein was found in the nucleus. Furthermore, analysis of transcription activity in yeast revealed that full-length GmPTF1 and its N-terminal and C-terminal domains could activate the histidine, adenine, and uracil reporter genes. This suggested that the N-terminal and C-terminal peptides of GmPTF1 act as transcriptional activators. When real-time quantitative polymerase chain reaction was performed, the expression of GmPTF1 under conditions of phosphate starvation was significantly induced in soybean roots of the low-Pi-tolerant variety ZH15. Moreover, the relative level of expression was much higher there than in roots of the sensitive variety NMH from days 7 to 56 of low-Pi stress. These results imply that GmPTF1 is involved in conferring tolerance to phosphate starvation in soybean.


Sujet(s)
Glycine max/physiologie , Phosphates/métabolisme , Protéines végétales/génétique , Protéines végétales/métabolisme , Facteurs de transcription/génétique , Facteurs de transcription/métabolisme , Séquence d'acides aminés , Séquence nucléotidique , Protéines du sang/génétique , Protéines du sang/métabolisme , Noyau de la cellule/métabolisme , Clonage moléculaire , Régulation de l'expression des gènes végétaux , Données de séquences moléculaires , Feuilles de plante/génétique , Feuilles de plante/métabolisme , Racines de plante/génétique , Racines de plante/métabolisme , Glycine max/génétique
18.
Genet Mol Res ; 13(1): 354-62, 2014 Jan 21.
Article de Anglais | MEDLINE | ID: mdl-24535862

RÉSUMÉ

Marsdenia tenacissima extract (MTE) is a new plate-derived biotechnology product that is frequently used, but occasionally reported, in the field of chemotherapy. In this study, we assessed the antitumor activity and related mechanisms of MTE by various biotechnological methods. The survival rates of MG63 osteosarcoma cells treated with MTE and doxorubicin were measured, individually or jointly, and the changes in cellular shape, apoptotic rates, and Fas expression were observed. The results indicated that combination of MTE and doxorubicin up-regulated Fas expression and induced apoptosis. The survival rate of combined application of 50 mg/mL MTE and 1 µg/mL doxorubicin was significantly lower than that of the individual application (P < 0.01). Other biotechnology methods also showed an apoptosis-inducing effect of combined application that was much stronger than individual application. All of these results suggested that MTE may promote the effects of doxorubicin chemotherapy, perhaps related to the up-regulation of Fas expression in tumor cells.


Sujet(s)
Antibiotiques antinéoplasiques/pharmacologie , Apoptose/effets des médicaments et des substances chimiques , Doxorubicine/pharmacologie , Marsdenia/composition chimique , Extraits de plantes/pharmacologie , Lignée cellulaire tumorale , Survie cellulaire/effets des médicaments et des substances chimiques , Humains
19.
Genet Mol Res ; 13(1): 1-10, 2014 Jan 03.
Article de Anglais | MEDLINE | ID: mdl-24421150

RÉSUMÉ

We investigated the effects of type 1 diabetes mellitus (T1DM) on endothelial progenitor cells (EPCs) at the molecular level and assessed the therapeutic potential of folic acid (FA) in DM. We downloaded the gene expression profile of the EPCs from T1DM patients before and after treatment with FA and from healthy controls. We identified the differentially expressed genes (DEGs) in the EPCs from T1DM patients before and after a four-week period of FA treatment and compared them with those obtained from the healthy subjects by using limma package in R language. Then, functional annotation of the DEGs was performed using the online tool Database for Annotation, Visualization and Integrated Discovery (DAVID) based on the Kyoto Encyclopedia of Genes and Genomes database. The expression of 696 genes was altered in the EPCs from T1DM patients compared to those from the healthy controls. These genes were mainly involved in the pathways associated with immune response. FA can normalize majority of the altered gene expression profiles of EPCs from T1DM patients to resemble those of healthy subjects, albeit with some side effects. FA can be a potential therapeutic agent for the treatment of T1DM. However, focused efforts are required to ensure that the dose of FA falls within the permissible pharmacological range.


Sujet(s)
Biologie informatique , Diabète de type 1/métabolisme , Cellules endothéliales/effets des médicaments et des substances chimiques , Acide folique/pharmacologie , Réseaux de régulation génique , Cellules souches/effets des médicaments et des substances chimiques , Études cas-témoins , Diabète de type 1/traitement médicamenteux , Diabète de type 1/anatomopathologie , Cellules endothéliales/métabolisme , Acide folique/usage thérapeutique , Analyse de profil d'expression de gènes , Humains , ARN messager/génétique , ARN messager/métabolisme , Cellules souches/métabolisme
20.
Braz J Med Biol Res ; 46(8): 681-8, 2013 Aug.
Article de Anglais | MEDLINE | ID: mdl-23903688

RÉSUMÉ

Hepatic oval cells (HOCs) are recognized as facultative liver progenitor cells that play a role in liver regeneration after acute liver injury. Here, we investigated the in vitro proliferation and differentiation characteristics of HOCs in order to explore their potential capacity for intrahepatic transplantation. Clusters or scattered HOCs were detected in the portal area and interlobular bile duct in the liver of rats subjected to the modified 2-acetylaminofluorene and partial hepatectomy method. Isolated HOCs were positive for c-kit and CD90 staining (99.8% and 88.8%, respectively), and negative for CD34 staining (3.6%) as shown by immunostaining and flow cytometric analysis. In addition, HOCs could be differentiated into hepatocytes and bile duct epithelial cells after leukemia inhibitory factor deprivation. A two-cuff technique was used for orthotopic liver transplantation, and HOCs were subsequently transplanted into recipients. Biochemical indicators of liver function were assessed 4 weeks after transplantation. HOC transplantation significantly prolonged the median survival time and improved the liver function of rats receiving HOCs compared to controls (P = 0.003, Student t-test). Administration of HOCs to rats also receiving liver transplantation significantly reduced acute allograft rejection compared to control liver transplant rats 3 weeks following transplantation (rejection activity index score: control = 6.3 ± 0.9; HOC = 3.5 ± 1.5; P = 0.005). These results indicate that HOCs may be useful in therapeutic liver regeneration after orthotopic liver transplantation.


Sujet(s)
Différenciation cellulaire/physiologie , Prolifération cellulaire , Transplantation cellulaire/méthodes , Hépatocytes/cytologie , Transplantation hépatique/méthodes , Animaux , Femelle , Cytométrie en flux , Rejet du greffon/diagnostic , Hépatectomie , Immunohistochimie , Foie/anatomie et histologie , Foie/chirurgie , Mâle , Culture de cellules primaires , Rats , Rats de lignée LEW , Réaction de polymérisation en chaine en temps réel/méthodes , Taux de survie
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