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1.
Int J Biol Macromol ; 264(Pt 1): 130481, 2024 Apr.
Article de Anglais | MEDLINE | ID: mdl-38431017

RÉSUMÉ

For applications in food industries, a fungal α-amylase from Malbranchea cinnamomea was engineered by directed evolution. Through two rounds of screening, a mutant α-amylase (mMcAmyA) was obtained with higher optimal temperature (70 °C, 5 °C increase) and better hydrolysis properties (18.6 % maltotriose yield, 2.5-fold increase) compared to the wild-type α-amylase (McAmyA). Site-directed mutations revealed that Threonine (Thr) 226 Serine (Ser) substitution was the main reason for the property evolution of mMcAmyA. Through high cell density fermentation, the highest expression level of Thr226Ser was 3951 U/mL. Thr226Ser was further used for bread baking with a dosage of 1000 U/kg flour, resulting in a 17.8 % increase in specific volume and a 35.6 % decrease in hardness compared to the control. The results were a significant improvement on those of McAmyA. Moreover, the mutant showed better anti-staling properties compared to McAmyA, as indicated by the improved sensory evaluation after 4 days of storage at 4 and 25 °C. These findings provide insights into the structure-function relationship of fungal α-amylase and introduce a potential candidate for bread-making industry.


Sujet(s)
Pain , alpha-Amylases , alpha-Amylases/génétique , alpha-Amylases/métabolisme , Hydrolyse , Triholosides
2.
FEBS J ; 291(9): 2009-2022, 2024 May.
Article de Anglais | MEDLINE | ID: mdl-38380733

RÉSUMÉ

Laminaripentaose (L5)-producing ß-1,3-glucanases can preferentially cleave the triple-helix curdlan into ß-1,3-glucooligosaccharides, especially L5. In this study, a newly identified member of the glycoside hydrolase family 64, ß-1,3-glucanase from Streptomyces pratensis (SpGlu64A), was functionally and structurally characterized. SpGlu64A shared highest identity (30%) with a ß-1,3-glucanase from Streptomyces matensis. The purified SpGlu64A showed maximal activity at pH 7.5 and 50 °C, and exhibited strict substrate specificity toward curdlan (83.1 U·mg-1). It efficiently hydrolyzed curdlan to produce L5 as the end product. The overall structure of SpGlu64A consisted of a barrel domain and a mixed (α/ß) domain, which formed an unusually wide groove with a crescent-like structure. In the two complex structures (SpGlu64A-L3 and SpGlu64A-L4), two oligosaccharide chains were captured and the triple-helical structure was relatively compatible with the wide groove, which suggested the possibility of binding to the triple-helical ß-1,3-glucan. A catalytic framework (ß6-ß9-ß10) and the steric hindrance formed by the side chains of residues Y161, N163, and H393 in the catalytic groove were predicted to complete the exotype-like cleavage manner. On the basis of the structure, a fusion protein with the CBM56 domain (SpGlu64A-CBM) and a mutant (Y161F; by site-directed mutation) were obtained, with 1.2- and 1.7-fold increases in specific activity, respectively. Moreover, the combined expression of SpGlu64A-CBM and -Y161F improved the enzyme activity by 2.63-fold. The study will not only be helpful in understanding the reaction mechanism of ß-1,3-glucanases but will also provide a basis for further enzyme engineering.


Sujet(s)
Oligosaccharides , Streptomyces , bêta-Glucanes , Streptomyces/enzymologie , Streptomyces/génétique , Spécificité du substrat , bêta-Glucanes/métabolisme , Oligosaccharides/métabolisme , Oligosaccharides/composition chimique , Protéines bactériennes/génétique , Protéines bactériennes/métabolisme , Protéines bactériennes/composition chimique , Modèles moléculaires , Glucan 1,3-beta-glucosidase/métabolisme , Glucan 1,3-beta-glucosidase/génétique , Glucan 1,3-beta-glucosidase/composition chimique , Séquence d'acides aminés , Glycosidases/génétique , Glycosidases/métabolisme , Glycosidases/composition chimique , Domaine catalytique , Cristallographie aux rayons X , Hydrolyse , Concentration en ions d'hydrogène , Cinétique
3.
Sci Rep ; 14(1): 2607, 2024 01 31.
Article de Anglais | MEDLINE | ID: mdl-38297111

RÉSUMÉ

Chronic hepatitis B virus (HBV) infection is a major cause of hepatocellular carcinoma (HCC), pegylated-interferon-α(PEG-IFNα) and long-term nucleos(t)ide analogs (NUCs) are mainly drugs used to treat HBV infection, but the effectiveness is unsatisfactory in different populations, the exploration of novel therapeutic approaches is necessary. RAD51C is associated with DNA damage repair and plays an important role in the development and progression of tumors. Early cDNA microarray results showed that RAD51C expression was significantly increased in HBV-infected HCC cells, however, the relationship between HBV infection and abnormal expression of RAD51C has not been reported. Therefore, we conducted RT-PCR, western blot, Co-immunoprecipitation(Co-IP), and immunofluorescence(IF) to detect HBV-RAD51C interaction in RAD51C overexpression or interfering HCC cells. Our results showed that RAD51C and HBV X protein(HBX) produced a direct interaction in the nucleus, the HBV infection of HCC cells promoted RAD51C expression, and the increased expression of RAD51C promoted HBV replication. This indicated that RAD51C is closely related to the occurrence and development of HCC caused by HBV infection, and may bring a breakthrough in the the prevention and treatment study of HCC.


Sujet(s)
Carcinome hépatocellulaire , Hépatite B chronique , Hépatite B , Tumeurs du foie , Humains , Virus de l'hépatite B/génétique , Carcinome hépatocellulaire/anatomopathologie , Tumeurs du foie/anatomopathologie , Hépatite B/complications , Hépatite B/génétique , Expression des gènes , Réplication virale , Protéines de liaison à l'ADN/génétique
5.
Environ Technol ; : 1-10, 2023 Aug 07.
Article de Anglais | MEDLINE | ID: mdl-37534577

RÉSUMÉ

ABSTRACTThe distribution and removal pathways of heavy metals within different sludge treatment wetlands (STWs) during different running periods in Northeast China have not been well studied. In this study, we examined three STWs, i.e. an STW with aeration tubes only (unit 1; U1), an STW with reeds and aeration tubes (unit 2; U2), and an STW with reeds only (unit 3; U3). The results showed that the levels of Cu as well as Zn accumulated faster within STW residual sludge, whereas the levels of Cd, Cr, Ni, and Pb accumulated more slowly and decreased slightly over time. The removal rates of heavy metals from the influent sludge by STWs ranged from 64.5% (Cr) to 92.2% (Zn). Reeds removed heavy metals from the STWs by direct absorption, and Zn was highly enriched in the reeds. The presence of reeds also promoted the spreading of heavy metals to the substrate layer and improved the removal of heavy metals in STWs. The mass of each heavy metal accumulated within the residual sludge of U2 and U3 was lower than that of U1, indicating that reeds could facilitate the removal of heavy metals. The STWs removed heavy metal mainly by substrate adsorption, and the mass percentage of heavy metals accumulated in the substrate ranged from 35.8 to 63.6%.

6.
Enzyme Microb Technol ; 164: 110177, 2023 Mar.
Article de Anglais | MEDLINE | ID: mdl-36549095

RÉSUMÉ

In our previous study, a ß-N-acetylhexosaminidase (HaHex74) from Haloferula sp. showing high human milk oligosaccharides (HMOs) synthesis ability was identified and characterized. In this study, HaHex74 was further engineered by directed evolution and site-saturation mutagenesis to improve its transglycosylation activity for HMOs synthesis. A mutant (mHaHex74) with improved transglycosylation activity (HaHex74-Asn401Ile/His394Leu) was obtained and characterized. mHaHex74 exhibited maximal activity at pH 5.5 and 35 °C, respectively, which were distinct from that of HaHex74 (pH 6.5 and 45 °C). Moreover, mHaHex74 showed the highest LNT2 conversion ratio of 28.2% from N,N'-diacetyl chitobiose (GlcNAc2), which is 2.2 folds higher than that of HaHex74. A three-enzyme cascade reaction for the synthesis of LNT2 and LNnT from chitin was performed in a 5-L reactor, and the contents of LNT2 and LNnT reached up to 15.0 g L1 and 4.9 g L1, respectively. Therefore, mHaHex74 maybe a good candidate for enzymatic synthesis of HMOs.


Sujet(s)
Protéines bactériennes , Chitine , Évolution moléculaire dirigée , Verrucomicrobia , beta-N-Acetylhexosaminidases , Humains , beta-N-Acetylhexosaminidases/composition chimique , beta-N-Acetylhexosaminidases/génétique , Lait humain , Oligosaccharides/composition chimique , Verrucomicrobia/enzymologie , Protéines bactériennes/composition chimique , Protéines bactériennes/génétique
7.
Front Aging Neurosci ; 14: 872134, 2022.
Article de Anglais | MEDLINE | ID: mdl-35547626

RÉSUMÉ

For decades, it has been widely believed that the blood-brain barrier (BBB) provides an immune privileged environment in the central nervous system (CNS) by blocking peripheral immune cells and humoral immune factors. This view has been revised in recent years, with increasing evidence revealing that the peripheral immune system plays a critical role in regulating CNS homeostasis and disease. Neurodegenerative diseases are characterized by progressive dysfunction and the loss of neurons in the CNS. An increasing number of studies have focused on the role of the connection between the peripheral immune system and the CNS in neurodegenerative diseases. On the one hand, peripherally released cytokines can cross the BBB, cause direct neurotoxicity and contribute to the activation of microglia and astrocytes. On the other hand, peripheral immune cells can also infiltrate the brain and participate in the progression of neuroinflammatory and neurodegenerative diseases. Neurodegenerative diseases have a high morbidity and disability rate, yet there are no effective therapies to stop or reverse their progression. In recent years, neuroinflammation has received much attention as a therapeutic target for many neurodegenerative diseases. In this review, we highlight the emerging role of the peripheral and central immune systems in neurodegenerative diseases, as well as their interactions. A better understanding of the emerging role of the immune systems may improve therapeutic strategies for neurodegenerative diseases.

8.
Enzyme Microb Technol ; 153: 109948, 2022 Jan.
Article de Anglais | MEDLINE | ID: mdl-34801773

RÉSUMÉ

ß-1,3-Glucan constitutes a prominent cell wall component being responsible for rigidity and strength of the cell wall structure in filamentous fungi. Glycoside hydrolase (GH) family 81 endo-ß-1,3-glucanases which can cleave the long chain of ß-1,3-glucans play a major role in fungal cell wall remodeling. Here, we reported the complex structures of a fungal GH family 81 endo-ß-1,3-glucanase from Rhizomucor miehei (RmLam81A), revealing the triple-helical ß-glucan recognition and hydrolysis patterns. In the crystals, three structured oligosaccharide ligands simultaneously interact with one enzyme molecular via seven glucose residues, and the spatial arrangement of ligands to RmLam81A was almost identical to that of ß-1,3-glucan triple-helical structure. RmLam81A performed an inverting catalysis mechanism with Asp475 and Glu557 severing as the general acid and base catalyst, respectively. Furthermore, two hydrophobic patches involving Tyr93, Tyr106, Ile108, Phe619 and Tyr628 alongside the ligand-binding site possibly formed parts of the binding site. A ligand-binding motif, ß31-ß32, consisting of two key residues (Lys622 and Asp624), involved the recognition of a triple-helical ß-glucan. Our results provided a structural basis for the unique ß-1,3-glucan recognition pattern and catalytic mechanism of fungal GH family 81 endo-ß-1,3-glucanases, which may be helpful in further understanding the diverse physiological functions of ß-1,3-glucanases.


Sujet(s)
Glycosidases , Rhizomucor/enzymologie , Catalyse , Glycosidases/composition chimique
9.
Biochim Biophys Acta Proteins Proteom ; 1869(11): 140709, 2021 11.
Article de Anglais | MEDLINE | ID: mdl-34358705

RÉSUMÉ

A chitinase gene (RmChiA) encoding 445 amino acid (aa) residues from a fungus Rhizomucor miehei was cloned and overexpressed in Escherichia coli. Two kinds of RmChiA crystal forms, with space groups P32 2 1 and P1, were obtained by sitting-drop vapor diffusion and the structures were determined by X-ray diffraction. The overall structure of RmChiA monomer, which is the first structure of bacterial-type chitinases from nonpathogenic fungi, adopts a canonical triosephosphate isomerase (TIM) barrel fold with two protruding chitinase insertion domains. RmChiA exhibited a unique NxDxE catalytical motif and a real active site tunnel structure, which are firstly found in GH family 18 chitinases. The motif had high structural homolog with the typical DxDxE motif in other GH family 18 chitinases. The tunnel is formed by two unusual long loops, containing 15 aa and 45 aa respectively, linked by a disulfide bond across the substrate-binding cleft. Mutation experiments found that opening the roof of tunnel structure increased the hydrolysis efficiency of RmChiA, but the thermostability of the mutants decreased. Moreover, the tunnel structure endowed RmChiA with the exo-chitinase character.


Sujet(s)
Domaine catalytique , Chitinase/composition chimique , Protéines fongiques/composition chimique , Rhizomucor/enzymologie , Chitinase/génétique , Chitinase/métabolisme , Stabilité enzymatique , Protéines fongiques/génétique , Protéines fongiques/métabolisme , Hydrolyse , Mutation
10.
J Struct Biol ; 213(3): 107774, 2021 09.
Article de Anglais | MEDLINE | ID: mdl-34329700

RÉSUMÉ

ß-1,3-1,4-Glucanases are a type of hydrolytic enzymes capable of catalyzing the strict cleavage of ß-1,4 glycosidic bonds adjacent to ß-1,3 linkages in ß-D-glucans and have exhibited great potential in food and feed industrials. In this study, a novel glycoside hydrolase (GH) family 12 ß-1,3-1,4-glucanase (CtGlu12A) from the thermophilic fungus Chaetomium sp. CQ31 was identified and biochemically characterized. CtGlu12A was most active at pH 7.5 and 65 °C, respectively, and exhibited a high specific activity of 999.9 U mg-1 towards lichenin. It maintained more than 80% of its initial activity in a wide pH range of 5.0-11.0, and up to 60 °C after incubation at 55 °C for 60 min. Moreover, the crystal structures of CtGlu12A with gentiobiose and tetrasccharide were resolved. CtGlu12A had a ß-jellyroll fold, and performed retaining mechanism with two glutamic acids severing as the catalytic residues. In the complex structure, cellobiose molecule showed two binding modes, occupying subsites -2 to -1 and subsites + 1 to + 2, respectively. The concave cleft made mixed ß-1,3-1,4-glucan substrates maintain a bent conformation to fit into the active site. Overall, this study is not only helpful for the understanding of the substrate-binding model and catalytic mechanism of GH 12 ß-1,3-1,4-glucanases, but also provides a basis for further enzymatic engineering of ß-1,3-1,4-glucanases.


Sujet(s)
Chaetomium , Glycosidases , Domaine catalytique , Chaetomium/métabolisme , Glycosidases/composition chimique , Hydrolyse , Spécificité du substrat
11.
Xi Bao Yu Fen Zi Mian Yi Xue Za Zhi ; 37(7): 602-607, 2021 Jul.
Article de Chinois | MEDLINE | ID: mdl-34140071

RÉSUMÉ

Objective To explore the anti-tumor activity of oncolytic vaccinia virus expressing CD40L (CD40L-VV) against colorectal cancer. Methods The CD40L-VV was obtained by integrating the sequence of CD40L into the skeleton of oncolytic vaccinia virus(VV). The tumor cells were infected with VV and CD40L-VV to verify their oncolytic activity and the expression of CD40L in vitro. After the tumor model of colorectal cancer was treated with VV and CD40L-VV, the tumor growth was monitored, and the phenotype of tumor infiltrating T cells was analyzed by flow cytometry. The anti-tumor activity of recombinant oncolytic VV was also reflected by detecting the production of cytokine and the proliferation activity of tumor infiltrating T cells. Results Microscopic observation and Western blot assay showed that CD40L-VV could effectively infect tumor cells and express CD40L. Cell viability assay showed that VV and CD40L-VV had dose-dependent lytic ability against tumor cells. The results of tumor transplantation in vivo showed that CD40L-VV had stronger ability to inhibiting tumor growth than VV. Flow cytometry showed that tumor infiltrating T cells in the CD40L-VV group had stronger cytokine secretion ability, stronger proliferative activity and more memory cell phenotypes than those in the VV group. Conclusion CD40L-VV can significantly inhibit the growth of colorectal cancer cells and enhance the anti-tumor activity of T cells in vivo.


Sujet(s)
Tumeurs colorectales , Virus oncolytiques , Animaux , Ligand de CD40/génétique , Tumeurs colorectales/génétique , Tumeurs colorectales/thérapie , Souris , Virus oncolytiques/génétique , Lymphocytes T , Virus de la vaccine/génétique
12.
Int J Biol Macromol ; 182: 1528-1536, 2021 Jul 01.
Article de Anglais | MEDLINE | ID: mdl-34022308

RÉSUMÉ

A chitinase gene (PxChi52) from Paenibacillus xylanexedens Z2-4 was cloned and heterologously expressed in Escherichia coli BL21 (DE3). PxChi52 shared the highest identity of 91% with a glycoside hydrolase family 18 chitinase (ChiD) from Bacillus circulans. The recombinant enzyme (PxChi52) was purified and biochemically characterized. PxChi52 had a molecular mass of 52.8 kDa. It was most active at pH 4.5 and 65 °C, respectively, and stable in a wide pH range of 4.0-13.0 and up to 50 °C. The enzyme exhibited the highest specific activity of 16.0 U/mg towards colloidal chitin, followed by ethylene glycol chitin (5.4 U/mg) and ball milled chitin (0.4 U/mg). The Km and Vmax values of PxChi52 towards colloidal chitin were determined to be 3.06 mg/mL and 71.38 U/mg, respectively, PxChi52 hydrolyzed colloidal chitin and chitooligosaccharides with degree of polymerization 2-5 to release mainly N-acetyl chitobiose. In addition, PxChi52 displayed inhibition effects on the growth of some phytopathogenic fungi, including Alternaria alstroemeriae, Botrytis cinerea, Rhizoctonia solani, Sclerotinia sclerotiorum and Valsa mali. The unique properties of PxChi52 may enable it potential application in agriculture field as a biocontrol agent.


Sujet(s)
Antifongiques/pharmacologie , Chitinase/pharmacologie , Ascomycota/effets des médicaments et des substances chimiques , Botrytis/effets des médicaments et des substances chimiques , Chitine/analogues et dérivés , Chitine/composition chimique , Chitosane , Diholoside/composition chimique , Oligosaccharides , Paenibacillus/enzymologie , Rhizoctonia/effets des médicaments et des substances chimiques
13.
Chem Biol Interact ; 337: 109394, 2021 Mar 01.
Article de Anglais | MEDLINE | ID: mdl-33508304

RÉSUMÉ

The imbalance of SUMOylation is related to different cancers, including gastric cancer (GC). Ginkgolic acid (GA) inhibits the growth and invasion of many cancer cells, and it has been reported to restrain SUMOylation. However, the role of GA in GC and whether it functions through SUMOylation remains to be clarified. Our research revealed that GA (15:1) inhibited cell proliferation, migration, epithelial-mesenchymal transition (EMT) and overall protein SUMOylation in BGC823 and HGC27 cells. In addition, knockdown of SUMO1 (small ubiquitin-like modifier) instead of SUMO2/3 played a similar role to GA in cell behaviors. Besides, nuclear IGF-1R (insulin-like growth factor 1 receptor) expression was markedly upregulated in GC cells compared to normal gastric epithelial cells. GA prevented IGF-1R from binding to SUMO1, thereby suppressing its nuclear accumulation. Further research found that IGF-1R directly bound to SNAI2 (snail family zinc finger 2) promoter. The interference of IGF-1R downregulated the mRNA and protein levels of SNAI2, while the overexpression of SUMO1, IGF-1R and UBC9 (SUMO-conjugating enzyme) played the opposite role. Furthermore, the co-transfection of SUMO1, UBC9 and IGF-1R vectors or the overexpression of SNAI2 reversed the inhibitory effects of GA on cell proliferation, migration and EMT. Finally, GA impeded the growth of GC xenografts and decreased the expression of nuclear IGF-1R and SNAI2 in vivo. In conclusion, these findings demonstrated that GA hindered the progression of GC by inhibiting the SUMOylation of IGF-1R. Thus, GA might be a promising therapeutic for GC.


Sujet(s)
Prolifération cellulaire/effets des médicaments et des substances chimiques , Transition épithélio-mésenchymateuse/effets des médicaments et des substances chimiques , Récepteur IGF de type 1/métabolisme , Salicylates/pharmacologie , Animaux , Lignée cellulaire tumorale , Mouvement cellulaire/effets des médicaments et des substances chimiques , Femelle , Régulation de l'expression des gènes/effets des médicaments et des substances chimiques , Humains , Souris , Souris nude , Interférence par ARN , Petit ARN interférent/métabolisme , Récepteur IGF de type 1/antagonistes et inhibiteurs , Récepteur IGF de type 1/génétique , Protéine SUMO-1/antagonistes et inhibiteurs , Protéine SUMO-1/génétique , Protéine SUMO-1/métabolisme , Salicylates/usage thérapeutique , Petites protéines modificatrices apparentées à l'ubiquitine/antagonistes et inhibiteurs , Petites protéines modificatrices apparentées à l'ubiquitine/génétique , Petites protéines modificatrices apparentées à l'ubiquitine/métabolisme , Facteurs de transcription de la famille Snail/génétique , Facteurs de transcription de la famille Snail/métabolisme , Tumeurs de l'estomac/traitement médicamenteux , Tumeurs de l'estomac/métabolisme , Tumeurs de l'estomac/anatomopathologie , Sumoylation/effets des médicaments et des substances chimiques , Transplantation hétérologue
14.
Appl Microbiol Biotechnol ; 105(4): 1601-1614, 2021 Feb.
Article de Anglais | MEDLINE | ID: mdl-33511444

RÉSUMÉ

Lactic acid bacteria (LAB) are important in food fermentation and may enhance overall host health. Previous studies to explore LAB metabolism mainly focused on the genera Lacticaseibacillus and Lactococcus. Pediococcus pentosaceus, historically recognized as an important food fermentation bacterial strain, can produce bacteriocins and occasionally demonstrated probiotic functionalities. This study thoroughly surveyed the growth kinetic of three P. pentosaceus isolates in various culture formulations, especially in fructooligosaccharide (FOS), xylooligosaccharide (XOS), or konjac mannooligosaccharide (KMOS) conditions. Results showed that P. pentosaceus effectively metabolized KMOS, the culture of which led to 23.6-fold population increase. However, FOS and XOS were less metabolized by P. pentosaceus. On functional oligosaccharide cultures, P. pentosaceus could result in higher population proliferation, more acidified fermentation environment, and higher glycoside hydrolysis activities in the culture. RNA-Seq analysis classified 1572 out of 1708 putative genes as mRNA-coding genes. The dataset also revealed that the three functional oligosaccharides led to extensive global functional gene regulations. Phosphate conservation and utilization efficiency enhancement may serve as a leading transcriptional regulation direction in functional oligosaccharide metabolisms. In summary, these discovered metabolic characteristics could be employed to support future studies. KEY POINTS: • Konjac mannooligosaccharides effectively promoted P. pentosaceus proliferation. • Functional genes were highly regulated in functional oligosaccharide utilization. • Phosphate conservation was an important transcriptional regulation direction.


Sujet(s)
Bactériocines , Probiotiques , Oligosaccharides , Pediococcus/génétique , Pediococcus pentosaceus/génétique , Transcriptome
15.
Appl Biochem Biotechnol ; 193(5): 1482-1495, 2021 May.
Article de Anglais | MEDLINE | ID: mdl-33484446

RÉSUMÉ

D-Mannose isomerase can reversibly catalyze D-fructose to D-mannose which has various beneficial effects. A novel D-mannose isomerase gene (PsMIaseA) from Pseudomonas syringae was cloned and expressed in Escherichia coli. The recombinant D-mannose isomerase (PsMIaseA) showed the highest amino acid sequence homogeneity of 50% with ManI from Thermobifda fusca. PsMIaseA was purified through Ni-NTA chromatography, and its specific activity was 818.6 U mg-1. The optimal pH and temperature of PsMIaseA were pH 7.5 and 45 °C, respectively. The enzyme was stable within a wide pH range from 5.0 to 10.0. It could efficiently convert D-fructose to D-mannose without any metal ions. When PsMIaseA was incubated with 600 g/L D-fructose for 6 h, the space-time yield of D-mannose reached 27.2 g L-1 h-1 with a maximum conversion ratio of 27%. Therefore, the D-mannose isomerase may be suitable for green production of D-mannose.


Sujet(s)
Aldose-ketose isomerases/métabolisme , Mannose/métabolisme , Pseudomonas syringae/métabolisme , Pseudomonas syringae/pathogénicité , Aldose-ketose isomerases/génétique , Concentration en ions d'hydrogène , Spécificité du substrat , Température
16.
J Environ Manage ; 274: 111190, 2020 Nov 15.
Article de Anglais | MEDLINE | ID: mdl-32771773

RÉSUMÉ

The objectives of this study were to clarify the distribution as well as the removal mechanism of antibiotic resistance genes (ARGs) within three sludge treatment wetlands (STWs) during a loading period of two years. Three STW units were constructed and run during the loading period: Unit 1 (U1) built with aeration tubes, Unit 2 (U2) built with aeration tubes and reeds, and Unit 3 (U3) built with reeds only. All targeted ARGs, intI1, and 16S rRNA were detected in residual sludge in the order of magnitude: 16S rRNA>sul1>intI1>sul2>tetC>tetA>ermB. The abundance of the five targeted ARGs, intI1, and 16S rRNA increased in residual sludge, during the loading period, which may be due to the increase in bacteria caused by the continuous import of exogenous nutrients. However, STWs can also remove ARGs from sewage during the loading period and the mean removal efficiency of five resistance genes was 73.0%. The removal rates of intI1 and 16S rRNA were 73.5% and 78.6%, respectively. Positive correlations were detected in abundance of most ARGs and intI1, as well as 16S rRNA (P < 0.05), indicating intI1 plays a vital part in the propagation of ARGs. The removal of bacteria harboring these genes also occurs in the STW units.


Sujet(s)
Eaux d'égout , Zones humides , Animaux , Antibactériens/pharmacologie , Résistance microbienne aux médicaments/effets des médicaments et des substances chimiques , Résistance microbienne aux médicaments/génétique , Gènes bactériens/génétique , ARN ribosomique 16S/génétique , Eaux usées/analyse
17.
Artif Cells Nanomed Biotechnol ; 48(1): 961-968, 2020 Dec.
Article de Anglais | MEDLINE | ID: mdl-32524841

RÉSUMÉ

Long non-coding RNAs and microRNAs are functional regulators in tumour progression. Herein, we revealed the level LINC02163 was up-regulated in CRC tissues and cell lines, and the expression of LINC02163 negatively correlated with prognosis of CRC patients. Functional experiments demonstrated knockdown of LINC02163 significantly attenuated CRC cells proliferation and metastasis. Mechanism analysis showed miR-511-3p could bind LINC02163 and AKT3, and the expressional level of miR-511-3p negatively correlated with the abundance of LINC02163 and AKT3. Inhibition of LINC02163 suppressed cell proliferation, while transfection of miR-511-3p inhibitor or AKT3 in LINC02163-depletion cells restored cell growth and abolished the cell cycle arrest in G0/G1 phase. Therefore, it was indicated that LINC02163 exerted pro-tumour effect through miR-511-3p/AKT3 axis and was prognostic marker for colorectal cancer.


Sujet(s)
Tumeurs colorectales/anatomopathologie , Évolution de la maladie , microARN/génétique , Protéines proto-oncogènes c-akt/métabolisme , ARN long non codant/génétique , Animaux , Séquence nucléotidique , Lignée cellulaire tumorale , Mouvement cellulaire/génétique , Tumeurs colorectales/génétique , Techniques de knock-down de gènes , Humains , Mâle , Souris , Souris de lignée BALB C , Invasion tumorale/génétique
18.
Appl Microbiol Biotechnol ; 104(13): 5813-5826, 2020 Jul.
Article de Anglais | MEDLINE | ID: mdl-32388762

RÉSUMÉ

Fucosyllactoses have gained much attention owing to their multiple functions, including prebiotic, immune, gut, and cognition benefits. In this study, human milk oligosaccharide (HMO) 2'-fucosyllactose (α-L-Fuc-(1,2)-D-Galß-1,4-Glu, 2'FL) and its isomer 3'-fucosyllactose (α-L-Fuc-(1,3)-D-Galß-1,4-Glu, 3'FL) with potential prebiotic effect were synthesized efficiently by a novel recombinant α-L-fucosidase. An α-L-fucosidase gene (PbFuc) from Pedobacter sp. CAU209 was successfully cloned and expressed in Escherichia coli (E. coli). The deduced amino acid sequence shared the highest identity of 36.8% with the amino sequences of other reported α-L-fucosidases. The purified α-L-fucosidase (PbFuc) had a molecular mass of 50 kDa. The enzyme exhibited specific activity (26.3 U/mg) towards 4-nitrophenyl-α-L-fucopyranoside (pNP-FUC), 3'FL (8.9 U/mg), and 2'FL (3.4 U/mg). It showed the highest activity at pH 5.0 and 35 °C, respectively. PbFuc catalyzed the synthesis of 3'FL and 2'FL through a transglycosylation reaction using pNP-FUC as donor and lactose as acceptor, and total conversion ratio was up to 85% at the optimized reaction conditions. The synthesized mixture of 2'FL and 3'FL promoted the growth of Lactobacillus delbrueckii subsp. bulgaricus NRRL B-548, L. casei subsp. casei NRRL B-1922, L. casei subsp. casei AS 1.2435, and Bifidobacterium longum NRRL B-41409. However, the growths of E. coli ATCC 11775, S. enterica AS 1.1552, L. monocytogenes CICC 21635, and S. aureus AS 1.1861 were not stimulated by the mixture of 2'FL and 3'FL. Overall, our findings suggest that PbFuc possesses a great potential for the specific synthesis of fucosylated compounds.Key Points• A novel α-L-fucosidase (PbFuc) from Pedobacter sp. was cloned and expressed.• PbFuc showed the highest hydrolysis activity at pH 5.0 and 35 °C, respectively.• It was used for synthesis of 3'-fucosyllactose (3'FL) and 2'-fucosyllactose (2'FL).• The mixture of 3'FL and 2'FL promoted the growth of some Lactobacillus sp. and Bifidobacteria sp.


Sujet(s)
Protéines bactériennes/métabolisme , Oligosaccharides/biosynthèse , Pedobacter/enzymologie , Triholosides/biosynthèse , alpha-L-Fucosidase/métabolisme , Séquence d'acides aminés , Protéines bactériennes/composition chimique , Protéines bactériennes/génétique , Protéines bactériennes/isolement et purification , Escherichia coli/génétique , Escherichia coli/métabolisme , Hétérosides/métabolisme , Glycosylation , Concentration en ions d'hydrogène , Hydrolyse , Lactose/métabolisme , Masse moléculaire , Pedobacter/génétique , Prébiotiques , Protéines recombinantes/composition chimique , Protéines recombinantes/génétique , Protéines recombinantes/isolement et purification , Protéines recombinantes/métabolisme , Spécificité du substrat , Température , alpha-L-Fucosidase/composition chimique , alpha-L-Fucosidase/génétique , alpha-L-Fucosidase/isolement et purification
19.
J Agric Food Chem ; 68(20): 5648-5657, 2020 May 20.
Article de Anglais | MEDLINE | ID: mdl-32338008

RÉSUMÉ

Bioproduction of N-acetyl-d-glucosamine (GlcNAc) from chitin, the second most abundant natural renewable polymer on earth, is of great value in which chitinolytic enzymes play key roles. In this study, a novel glycoside hydrolase family-18 ß-N-acetylglucosaminidase (PbNag39) from Paenibacillus barengoltzii suitable for GlcNAc production was identified and biochemically characterized. It possessed a unique shallow catalytic groove (5.8 Å) as well as a smaller C-terminal domain (solvent-accessible surface area, 5.1 × 103 Å2) and exhibited strict substrate specificity toward N-acetyl chitooligosaccharides (COS) with GlcNAc as the sole product, showing a typical manner of action of ß-N-acetylglucosaminidases. Thus, an environmentally friendly bioprocess for GlcNAc production from ball-milled powdery chitin by an enzyme cocktail reaction was further developed. By using the new route, the powdery chitin conversion rate increased from 23.3% (v/v) to 75.3% with a final GlcNAc content of 22.6 mg mL-1. The efficient and environmentally friendly bioprocess may have great application potential in GlcNAc production.


Sujet(s)
Acétyl-glucosamine/métabolisme , Acetylglucosaminidase/composition chimique , Protéines bactériennes/composition chimique , Paenibacillus/enzymologie , Acetylglucosaminidase/génétique , Acetylglucosaminidase/métabolisme , Protéines bactériennes/génétique , Protéines bactériennes/métabolisme , Clonage moléculaire , Cinétique , Paenibacillus/composition chimique , Paenibacillus/génétique , Paenibacillus/métabolisme , Domaines protéiques , Spécificité du substrat
20.
Biotechnol Lett ; 42(8): 1489-1499, 2020 Aug.
Article de Anglais | MEDLINE | ID: mdl-32170432

RÉSUMÉ

OBJECTIVES: Chitinases play important role in chitin bioconversion, while few of them have been put into use due to their poor properties. We aimed to identify and characterize chitinases suitable for N-acetyl chitooligosaccharides (COSs) production from chitin materials. RESULTS: A chitinase gene (SsChi28) from Streptomyces sampsonii XY2-7 was cloned and heterologously expressed in E. coli BL21 (DE3) as an active protein. The deduced protein shared high sequence identities and structure similarities with some glycoside hydrolase family 19 chitinases. The recombinant enzyme (SsChi28) was purified and biochemically characterized. SsChi28 was a monomeric protein with a molecular mass of 30 kDa estimated by SDS-PAGE. It was most active at pH 6.0 and 55 °C, respectively, and stable in a wide pH range of 3.5-11.5 and up to 60 °C. The enzyme exhibited strict substrate specificities towards ethylene glycol chitin (222.3 U/mg) and colloidal chitin (20.1 U/mg). Besides, it displayed lysozyme activity against Micrococcus lysodeikticus. SsChi28 hydrolyzed colloidal chitin to yield mainly N-acetyl chitobiose, accounting high up to 73% (w/w) in total products. CONCLUSION: The excellent enzymatic properties of SsChi28 may make it potential in chitin bioconversion (especially for N-acetyl COS production), as well as in biological control of fungal diseases.


Sujet(s)
Protéines bactériennes , Chitinase , Diholoside/métabolisme , Lysozyme , Streptomyces , Protéines bactériennes/composition chimique , Protéines bactériennes/génétique , Protéines bactériennes/métabolisme , Chitinase/composition chimique , Chitinase/génétique , Chitinase/métabolisme , Stabilité enzymatique , Escherichia coli/génétique , Lysozyme/composition chimique , Lysozyme/génétique , Lysozyme/métabolisme , Protéines recombinantes/composition chimique , Protéines recombinantes/génétique , Protéines recombinantes/métabolisme , Streptomyces/enzymologie , Streptomyces/génétique , Spécificité du substrat
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