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FEMS Microbiol Ecol ; 85(1): 179-94, 2013 Jul.
Article de Anglais | MEDLINE | ID: mdl-23556538

RÉSUMÉ

Ammonia oxidation is a key process in the global nitrogen cycle. However, in tropical soils, little is known about ammonia-oxidizing microorganisms and how characteristically variable oxygen regimes affect their activity. We investigated the influence of brief anaerobic periods on ammonia oxidation along an elevation, moisture, and oxygen availability gradient in wet tropical soils. Soils from three forest types were incubated for up to 36 weeks in lab microcosms under three regimes: (1) static aerobic; (2) static anaerobic; and (3) fluctuating (aerobic/anaerobic). Nitrification potential was measured in field-fresh soils and incubated soils. The native ammonia-oxidizing community was also characterized, based on diversity assessments (clone libraries) and quantification of the ammonia monooxygenase α-subunit (amoA) gene. These relatively low pH soils appear to be dominated by ammonia-oxidizing archaea (AOA), and AOA communities in the three soil types differed significantly in their ability to oxidize ammonia. Soils from an intermediate elevation, and those incubated with fluctuating redox conditions, tended to have the highest nitrification potential following an influx of oxygen, although all soils retained the capacity to nitrify even after long anoxic periods. Together, these results suggest that wet tropical soil AOA are tolerant of extended periods of anoxia.


Sujet(s)
Ammoniac/métabolisme , Archéobactéries/métabolisme , Nitrification , Microbiologie du sol , Climat tropical , Aérobiose , Anaérobiose , Archéobactéries/classification , Archéobactéries/isolement et purification , Bactéries/génétique , Bactéries/isolement et purification , Bactéries/métabolisme , Oxydoréduction , Oxidoreductases/génétique , Porto Rico , Sol , Arbres
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