Molecular and spatial evaluation of small rodents and Didelphimorphis infected with Mycobacterium leprae in the southern Amazon, Brazil.

BACKGROUND: The high levels of recent transmission of leprosy worldwide demonstrate the necessity of epidemiologic surveillance to understand and control its dissemination. Brazil remains the second in number of cases around the world, indicating active transmission of Mycobacterium leprae (M. leprae) in the population. At this moment, there is a consensus that the bacillus is transmitted by inter-human contact, however, different serologic, molecular, and histopathological approaches indicate the existence of non-human transmission sources. METHODS AND RESULTS: The qPCR assay was used to amplify the molecular targets 16S RNAr and RLEP, in samples of liver, spleen, and ear of wild animals belonging to Didelphimorphia and Rodentia orders, in highly endemic areas of Mato Grosso, Brazil. The RLEP repetitive sequence was positive in 202 (89.0%) samples, with 96 (42.3%) of these also being positive for the 16S gene. Regarding the collection sites, it was observed that the animals were found in areas profoundly deforested, close to urban areas. CONCLUSIONS: Our results suggest that wild animals can play an important role in the maintenance of M. leprae in endemic regions with major anthropic action in Brazil. Therefore, integrating human, animal, and environmental health care with the One Health initiative is highly efficient for the development of effective strategies to contain and control leprosy in Brazil.

AMAZONIA CAMTRAP: A data set of mammal, bird, and reptile species recorded with camera traps in the Amazon forest.

The Amazon forest has the highest biodiversity on Earth. However, information on Amazonian vertebrate diversity is still deficient and scattered across the published, peer-reviewed, and gray literature and in unpublished raw data. Camera traps are an effective non-invasive method of surveying vertebrates, applicable to different scales of time and space. In this study, we organized and standardized camera trap records from different Amazon regions to compile the most extensive data set of inventories of mammal, bird, and reptile species ever assembled for the area. The complete data set comprises 154,123 records of 317 species (185 birds, 119 mammals, and 13 reptiles) gathered from surveys from the Amazonian portion of eight countries (Brazil, Bolivia, Colombia, Ecuador, French Guiana, Peru, Suriname, and Venezuela). The most frequently recorded species per taxa were: mammals: Cuniculus paca (11,907 records); birds: Pauxi tuberosa (3713 records); and reptiles: Tupinambis teguixin (716 records). The information detailed in this data paper opens up opportunities for new ecological studies at different spatial and temporal scales, allowing for a more accurate evaluation of the effects of habitat loss, fragmentation, climate change, and other human-mediated defaunation processes in one of the most important and threatened tropical environments in the world. The data set is not copyright restricted; please cite this data paper when using its data in publications and we also request that researchers and educators inform us of how they are using these data.

Land-use effects on mosquito biodiversity and potential arbovirus emergence in the Southern Amazon, Brazil.

The Amazon rainforest is considered the largest reservoir of culicids and arboviruses in the world. It has been under intense human-driven alteration, especially in the so-called 'Arc of Deforestation', located in the eastern and southern regions. The emergence and transmission of infectious diseases are increasing, potentially due to land-use change. We used landscape-scale mosquito surveillance across a forest fragmentation gradient in the southern Amazon to evaluate the relationship between forest disturbance and the composition and structure of mosquito communities with a particular focus on the potential for arbovirus emergence in the region. Generalized linear models and logistic regression were used to associate the degree of landscape disturbance with arbovirus vectors' richness and abundance. A total of 1,960 culicids, belonging to 50 species, were collected from 2015 to 2016. Among these species, 20 have been associated with the transmission of arboviruses. Our results show an association of land use, more specifically small size of forest remnants with more irregular shape and higher edge density, with the increase of arbovirus vectors' richness and abundance. Six species of mosquito vectors exhibited a higher probability of occurrence in landscapes with medium or high degrees of disturbance. Our results indicate that land-use change influences mosquito communities with potential implications for the emergence of arboviruses.

Invertebrates for vertebrate biodiversity monitoring: Comparisons using three insect taxa as iDNA samplers.

Metabarcoding of environmental DNA (eDNA) is now widely used to build diversity profiles from DNA that has been shed by species into the environment. There is substantial interest in the expansion of eDNA approaches for improved detection of terrestrial vertebrates using invertebrate-derived DNA (iDNA) in which hematophagous, sarcophagous, and coprophagous invertebrates sample vertebrate blood, carrion, or faeces. Here, we used metabarcoding and multiple iDNA samplers (carrion flies, sandflies, and mosquitos) collected from 39 forested sites in the southern Amazon to profile gamma and alpha diversity. Our main objectives were to (1) compare diversity found with iDNA to camera trapping, which is the conventional method of vertebrate diversity surveillance; and (2) compare each of the iDNA samplers to assess the effectiveness, efficiency, and potential biases associated with each sampler. In total, we collected and analysed 1759 carrion flies, 48,686 sandflies, and 4776 mosquitos. Carrion flies revealed the greatest total vertebrate species richness at the landscape level, despite the least amount of sampling effort and the fewest number of individuals captured for metabarcoding, followed by sandflies. Camera traps had the highest median species richness at the site-level but showed strong bias towards carnivore and ungulate species and missed much of the diversity described by iDNA methods. Mosquitos showed a strong feeding preference for humans as did sandflies for armadillos, thus presenting potential utility to further study related to host-vector interactions.

Detection of Ilheus virus in mosquitoes from southeast Amazon, Brazil.

BACKGROUND: Arbovirus surveillance in field-collected mosquitoes is essential in monitoring virus activity to avoid emergence and outbreaks of arboviruses. METHODS: We used reverse transcription polymerase chain reaction methods to search for arbovirus in mosquitoes collected in Brazil's southeast Amazon forest remnants during 2015-2016. RESULTS: We detected Iheus virus (ILHV) RNA in Culex declarator, Culex (Melanoconion) and Ochlerotatus serratus mosquitoes. CONCLUSIONS: These results indicate ILHV circulation in the studied area, highlighting its potential emergence in human population. More studies are necessary to confirm the roles of these three species in ILHV maintenance.

Mudanças no Código Florestal e seu impacto na ecologia e diversidade dos mamíferos no Brasil / Forest legislative changes and their impacts on mammal ecology and diversity in Brazil

Os ecossistemas florestais do Brasil abrigam um dos mais altos níveis de diversidade de mamíferos da Terra, e boa parte dessa diversidade se encontra nas áreas legalmente protegidas em áreas de domínio privado. As reservas legais (RLs) e áreas de proteção permanente (APPs) representam estratégias importantes para a proteção e manutenção dessa diversidade. Mudanças propostas no Código Florestal certamente trarão efeitos irreversíveis para a diversidade de mamíferos no Brasil. Os mamíferos apresentam papéis-chave nos ecossistemas, atuando como polinizadores e dispersores de sementes. A extinção local de algumas espécies pode reduzir os serviços ecológicos nas RLs e APPs. Outra consequência grave da redução de áreas de vegetação nativa caso a mudança no Código Florestal seja aprovada será o aumento no risco de transmição de doenças, trazendo sério problemas a saúde pública no Brasil.

Forest ecosystems within Brazil host one of the highest levels of mammalian diversity on Earth, much of which within legally required forest set-asides in private landholdings. The Legal Reserves (RLs) and Permanent Protected Areas (APPs) of the Brazilian Forest Code provide an important strategy to maintain this diversity. Yet a proposed amendment to Brazil's 1965 forestry code would reduce protection of Brazil's forests, including the Amazon and the Atlantic forest, and bring irreversible detrimental effects to mammal diversity. Mammals are key components of forest ecosystem, providing important environmental services as pollinators, seed dispersers and ecosystem engineers. The local extinction of some species will negatively affect forest ecosystem service provisioning throughout the country. Another important effect of forest conversion within private properties, should the proposed changes happen, will be the emergence of new diseases, bringing serious public health problems in Brazil.

Habitat quality of the woolly spider monkey (Brachyteles hypoxanthus).

This study examines how habitat structure affects the home range use of a group of Brachyteles hypoxanthus in the Brigadeiro State Park, Brazil. It has been reported that most of the annual feeding time of woolly spider monkeys is spent eating leaves, but they prefer fruits when available. We hypothesise that the protein-to-fibre ratio (PF; best descriptor of habitat quality for folivorous primates) is a better descriptor of habitat quality and abundance for these primates than the structural attributes of forests (basal area is the best descriptor of habitat quality for frugivorous primates of Africa and Asia). We evaluated plant community structure, successional status, and PF of leaf samples from the dominant tree populations, both within the core and from a non-core area of the home range of our study group. Forest structure was a combination of stem density and basal area of dominant tree populations. The core area had larger trees, a higher forest basal area, and higher stem density than the non-core area. Mean PF did not differ significantly between these sites, although PF was influenced by differences in tree regeneration guilds. Large-bodied monkeys could be favoured by later successional stages of forests because larger trees and denser stems prevent the need for a higher expenditure of energy for locomotion as a consequence of vertical travel when the crowns of trees are disconnected in early successional forests. Forest structure variables (such as basal area of trees) driven by succession influence woolly spider monkey abundance in a fashion similar to frugivorous monkeys of Asia and Africa, and could explain marked differences in ranging behaviour and home range use by B. hypoxanthus.

Floristic, edaphic and structural characteristics of flooded and unflooded forests in the lower Rio Purús region of central Amazonia, Brazil

Despite a natural history interest in the early 1900s, relatively little ecological research has been carried out in the Rio Purús basin of central Amazonia, Brazil. Here we describe a new study area in the region of Lago Uauaçú with an emphasis on the climate, forest structure and composition, and soil characteristics between adjacent unflooded (terra firme) and seasonally inundated forests; situated within both the white-water (várzea) and black-water (igapó) drainage systems that dominate the landscape. The climate was found to be typical of that of the central Amazon. Várzea forest soils had high concentrations of nutrients, while terra firme and igapó soils were comparatively nutrient-poor. Terra firme forests were the most floristically diverse forest type, whereas várzea was intermediate, and igapó the most species-poor. The Lecythidaceae was the most important family in terra firme while the Euphorbiaceae was the most important in both várzea and igapó. There were significant differences between forest types in terms of number of saplings, canopy cover and understorey density. In contrasting our results with other published information, we conclude that the Lago Uauaçú region consists of a typical central Amazonian forest macro-mosaic, but is a unique area with high conservation value due to the intimate juxtaposition of terra firme, várzea and igapó forests.