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1.
Int J Syst Evol Microbiol ; 56(Pt 5): 1059-1065, 2006 May.
Article de Anglais | MEDLINE | ID: mdl-16627655

RÉSUMÉ

Bacterial strains UST030701-097T and UST030701-084T were isolated from a marine sponge in the Bahamas. Both strains were pink-pigmented, Gram-negative, strictly aerobic and chemo-organotrophic. Cells of strain UST030701-097T were short, curved rods with fast-gliding motility, whereas those of strain UST030701-084T were straight rods with a less rapid gliding motion. The two strains had MK-7 as the major respiratory quinone and did not produce flexirubin-type pigments. The DNA G+C contents of strains UST030701-097T and UST030701-084T were 42.5 and 43.7 mol%, respectively. Phylogenetic analysis based on 16S rRNA gene sequences indicated that the two strains belonged to the family 'Flexibacteraceae' of the phylum Bacteroidetes. 16S rRNA gene sequence similarity between strains UST030701-097T and UST030701-084T was 95.0 %; their closest relative was [Marinicola] seohaensis, with 93.3 % and 96.0 % sequence similarity, respectively. Phylogenetic tree topology indicated that the two strains belonged to the same lineage, but were on separate branches. Whilst strain UST030701-084T and [Marinicola] seohaensis were found on one branch, strain UST030701-097T was in another branch that had no species with validly published names. Based on the polyphasic taxonomic data obtained in the present study, we propose that strain UST030701-097T represents a novel genus and that strain UST030701-084T represents a novel species in the phylum Bacteroidetes. The genus Fabibacter gen. nov. is proposed, with strain UST030701-097T (=NRRL B-41220T=JCM 13334T) as the type strain of the type species, Fabibacter halotolerans sp. nov. Strain UST030701-084T (=NRRL B-41219T=JCM 13337T) is proposed as the type strain of Roseivirga spongicola sp. nov. In an earlier study, it was suggested that the genus Marinicola is a later heterotypic synonym of the genus Roseivirga. However, a formal proposal to reclassify [Marinicola] seohaensis, the only member of the genus Marinicola, has not yet been made. The results of phylogenetic analyses in this study support the reclassification of [Marinicola] seohaensis as Roseivirga seohaensis comb. nov.


Sujet(s)
Cytophagaceae/classification , Cytophagaceae/isolement et purification , Porifera/microbiologie , Aérobiose , Animaux , Techniques de typage bactérien , Bahamas , Composition en bases nucléiques , Cytophagaceae/cytologie , Cytophagaceae/physiologie , ADN bactérien/composition chimique , ADN bactérien/génétique , ADN ribosomique/composition chimique , ADN ribosomique/génétique , Gènes d'ARN ribosomique , Chlorure de méthylrosanilinium , Biologie marine , Données de séquences moléculaires , Mouvement , Phénazines , Phylogenèse , Pigments biologiques/biosynthèse , Polyènes/analyse , Quinones/analyse , Quinones/isolement et purification , ARN bactérien/génétique , ARN ribosomique 16S/génétique , Analyse de séquence d'ADN
2.
Int J Syst Evol Microbiol ; 56(Pt 1): 181-5, 2006 Jan.
Article de Anglais | MEDLINE | ID: mdl-16403884

RÉSUMÉ

A bacterial strain, UST030701-156T, was isolated from a marine sponge in the Bahamas. Strain UST030701-156T was orange-pigmented, Gram-negative, rod-shaped with tapered ends, slowly motile by gliding and strictly aerobic. The predominant fatty acids were a15 : 0, i15 : 0, i15 : 0 3-OH, i17 : 0 3-OH, i17 : 1omega9c and summed feature 3, comprising i15 : 0 2-OH and/or 16 : 1omega7c. MK-6 was the only respiratory quinone. Flexirubin-type pigments were not produced. Phylogenetic analysis based on 16S rRNA gene sequences placed UST030701-156T within a distinct lineage in the family Flavobacteriaceae, with 93.3 % sequence similarity to the nearest neighbour, Nonlabens tegetincola. The DNA G+C content of UST030701-156T was 41.0 mol% and was much higher than that of N. tegetincola (33.6 mol%). Strain UST030701-156T can be distinguished from other members of the Flavobacteriaceae by means of a number of chemotaxonomic and phenotypic characteristics. It is proposed, therefore, that UST030701-156T represents a novel taxon designated Stenothermobacter spongiae gen. nov., sp. nov. The type strain is UST030701-156T (= NRRL B-41138T = JCM 13191T). Carbon-source utilization by N. tegetincola was re-examined and an emended description is therefore included.


Sujet(s)
Flavobacteriaceae/classification , Porifera/microbiologie , Eau de mer/microbiologie , Aérobiose , Animaux , Bahamas , Composition en bases nucléiques , Carbone/métabolisme , Acides gras , Flavobacteriaceae/composition chimique , Flavobacteriaceae/isolement et purification , Flavobacteriaceae/physiologie , Données de séquences moléculaires , ARN bactérien/génétique , ARN ribosomique 16S/génétique , Similitude de séquences d'acides nucléiques , Spécificité d'espèce , Vitamine K2/analogues et dérivés
3.
Int J Syst Evol Microbiol ; 55(Pt 4): 1589-1592, 2005 Jul.
Article de Anglais | MEDLINE | ID: mdl-16014486

RÉSUMÉ

A Gram-negative, rod-shaped bacterium (designated strain UST030701-295(T)) with fast gliding motility was isolated from the surface of the sponge Lissodendoryx isodictyalis in the Bahamas. Colonies of UST030701-295(T) were yellow in colour, 2-4 mm in diameter, convex with a smooth surface and entire margins. UST030701-295(T) was heterotrophic, strictly aerobic and required NaCl for growth (1.0-4.0%). Growth was observed at pH 6.0-10.0 and at 12-44 degrees C. Phylogenetic analysis of the 16S rRNA gene sequence placed UST030701-295(T) within the genus Winogradskyella of the family Flavobacteriaceae, sharing 94.7-95.8% similarity with the three recognized members of the genus. The G+C content of the DNA was 32.8 mol% and the predominant fatty acids were iso-C(15:1), iso-C(15:0), iso-C(15:0) 2-OH, iso-C(15:0) 3-OH, iso-C(16:0) 3-OH, C(16:1)omega7 and iso-C(17:0) 3-OH (together representing 75.4% of the total); these data supported the affiliation of UST030701-295(T) to the genus Winogradskyella. UST030701-295(T) differed from the three recognized species of Winogradskyella in 7-17 traits. Molecular evidence together with phenotypic characteristics suggests that UST030701-295(T) represents a novel species within the genus Winogradskyella, for which the name Winogradskyella poriferorum sp. nov. is proposed. The type strain is UST030701-295(T) (=NRRL B-41101(T)=JCM 12885(T)).


Sujet(s)
Flavobacteriaceae/classification , Porifera/microbiologie , Animaux , Techniques de typage bactérien , Bahamas , Composition en bases nucléiques , ADN bactérien/analyse , ADN ribosomique/analyse , Flavobacteriaceae/génétique , Flavobacteriaceae/isolement et purification , Flavobacteriaceae/physiologie , Gènes d'ARN ribosomique , Données de séquences moléculaires , Phénotype , Phylogenèse , ARN ribosomique 16S/génétique , Analyse de séquence d'ADN , Spécificité d'espèce
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