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1.
MedComm (2020) ; 4(5): e400, 2023 Oct.
Article de Anglais | MEDLINE | ID: mdl-37822714

RÉSUMÉ

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is the causal agent for coronavirus disease 2019 (COVID-19). Although vaccines have helped to prevent uncontrolled viral spreading, our understanding of the fundamental biology of SARS-CoV-2 infection remains insufficient, which hinders effective therapeutic development. Here, we found that Apolipoprotein E (ApoE), a lipid binding protein, is hijacked by SARS-CoV-2 for infection. Preincubation of SARS-CoV-2 with a neutralizing antibody specific to ApoE led to inhibition of SARS-CoV-2 infection. The ApoE neutralizing antibody efficiently blocked SARS-CoV-2 infection of human iPSC-derived astrocytes and air-liquid interface organoid models in addition to human ACE2-expressing HEK293T cells and Calu-3 lung cells. ApoE mediates SARS-CoV-2 entry through binding to its cellular receptors such as the low density lipoprotein receptor (LDLR). LDLR knockout or ApoE mutations at the receptor binding domain or an ApoE mimetic peptide reduced SARS-CoV-2 infection. Furthermore, we detected strong membrane LDLR expression on SARS-CoV-2 Spike-positive cells in human lung tissues, whereas no or low ACE2 expression was detected. This study provides a new paradigm for SARS-CoV-2 cellular entry through binding of ApoE on the lipoviral particles to host cell receptor(s). Moreover, this study suggests that ApoE neutralizing antibodies are promising antiviral therapies for COVID-19 by blocking entry of both parental virus and variants of concern.

2.
Cell Rep ; 42(8): 112841, 2023 08 29.
Article de Anglais | MEDLINE | ID: mdl-37494190

RÉSUMÉ

The C allele of rs11136000 variant in the clusterin (CLU) gene represents the third strongest known genetic risk factor for late-onset Alzheimer's disease. However, whether this single-nucleotide polymorphism (SNP) is functional and what the underlying mechanisms are remain unclear. In this study, the CLU rs11136000 SNP is identified as a functional variant by a small-scale CRISPR-Cas9 screen. Astrocytes derived from isogenic induced pluripotent stem cells (iPSCs) carrying the "C" or "T" allele of the CLU rs11136000 SNP exhibit different CLU expression levels. TAR DNA-binding protein-43 (TDP-43) preferentially binds to the "C" allele to promote CLU expression and exacerbate inflammation. The interferon response and CXCL10 expression are elevated in cytokine-treated C/C astrocytes, leading to inhibition of oligodendrocyte progenitor cell (OPC) proliferation and myelination. Accordingly, elevated CLU and CXCL10 but reduced myelin basic protein (MBP) expression are detected in human brains of C/C carriers. Our study uncovers a mechanism underlying reduced white matter integrity observed in the CLU rs11136000 risk "C" allele carriers.


Sujet(s)
Clusterine , Cellules souches pluripotentes induites , Précurseurs des oligodendrocytes , Humains , Allèles , Astrocytes , Prolifération cellulaire , Clusterine/génétique , Prédisposition génétique à une maladie , Polymorphisme de nucléotide simple/génétique
3.
Adv Sci (Weinh) ; 10(23): e2206910, 2023 08.
Article de Anglais | MEDLINE | ID: mdl-37271923

RÉSUMÉ

Demyelinating disorders are among the most common and debilitating diseases in neurology. Canavan disease (CD) is a lethal demyelinating disease caused by mutation of the aspartoacylase (ASPA) gene, which leads to the accumulation of its substrate N-acetyl-l-aspartate (NAA), and consequently demyelination and vacuolation in the brain. In this study, hypoimmunogenic human induced pluripotent stem cell (iPSC)-derived oligodendrocyte progenitor cells (OPC) are developed from a healthy donor as an "off-the-shelf" cell therapy. Hypoimmunogenic iPSCs are generated through CRISPR/Cas9 editing of the human leukocyte antigen (HLA) molecules in healthy donor-derived iPSCs and differentiated into OPCs. The OPCs are engrafted into the brains of CD (nur7) mice and exhibit widespread distribution in the brain. The engrafted OPCs mature into oligodendrocytes that express the endogenous wildtype ASPA gene. Consequently, the transplanted mice exhibit elevated human ASPA expression and enzymatic activity and reduced NAA level in the brain. The transplanted OPCs are able to rescue major pathological features of CD, including defective myelination, extensive vacuolation, and motor function deficits. Moreover, the hypoimmunogenic OPCs exhibit low immunogenicity both in vitro and in vivo. The hypoimmunogenic OPCs can be used as "off-the-shelf" universal donor cells to treat various CD patients and many other demyelinating disorders, especially autoimmune demyelinating diseases, such as multiple sclerosis.


Sujet(s)
Maladie de Canavan , Cellules souches pluripotentes induites , Sclérose en plaques , Précurseurs des oligodendrocytes , Humains , Souris , Animaux , Gaine de myéline/métabolisme , Gaine de myéline/anatomopathologie , Cellules souches pluripotentes induites/anatomopathologie , Précurseurs des oligodendrocytes/anatomopathologie , Oligodendroglie/métabolisme , Maladie de Canavan/génétique , Maladie de Canavan/métabolisme , Maladie de Canavan/anatomopathologie
4.
Noncoding RNA ; 9(2)2023 Mar 17.
Article de Anglais | MEDLINE | ID: mdl-36960965

RÉSUMÉ

miRNAs are critical for pancreas development and function. However, we found that there are discrepancies regarding pancreatic miRNA abundance in published datasets. To obtain a more relevant profile that is closer to the true profile, we profiled small RNAs from human islets cells, acini, and four rodent pancreatic cell lines routinely used in diabetes and pancreatic research using a bias reduction protocol for small RNA sequencing. In contrast to the previous notion that miR-375-3p is the most abundant pancreatic miRNA, we found that miR-148a-3p and miR-7-5p were also abundant in islets. In silico studies using predicted and validated targets of these three miRNAs revealed that they may work cooperatively in endocrine and exocrine cells. Our results also suggest, compared to the most-studied miR-375, that both miR-148a-3p and miR-7-5p may play more critical roles in the human pancreas. Moreover, according to in silico-predicted targets, we found that miR-375-3p had a much broader target spectrum by targeting the coding sequence and the 5' untranslated region, rather than the conventional 3' untranslated region, suggesting additional unexplored roles of miR-375-3p beyond the pancreas. Our study provides a valuable new resource for studying miRNAs in pancreata.

5.
Anticancer Drugs ; 34(7): 816-826, 2023 08 01.
Article de Anglais | MEDLINE | ID: mdl-36728962

RÉSUMÉ

BACKGROUND: Circular RNA (circRNA) plays a significant role in cisplatin (DDP) resistance. The purpose of this study was to explore the role of circ_0005667 in DDP resistance of endometrial carcinoma (EC) cells. METHODS: The expression of circular RNA circ_0005667, microRNA-145-5p (miR-145-5p) and insulin-like growth factor 2 mRNA-binding protein 1 (IGF2BP1) in DDP-sensitive and DDP-resistant EC tissues and EC cells was determined by quantitative real-time PCR (qRT-PCR). The expression of apoptosis-related proteins, drug resistance-related proteins and IGF2BP1 proteins were detected by western blot. The half-maximal inhibitory concentration (IC 50 ) of DDP was determined using a cell counting kit-8 (CCK-8) assay. For functional assays, cell proliferation, migration, invasion and cell apoptosis were determined using 5-ethynyl-2'-deoxyuridine (EdU) assay, wound healing assay, transwell assay and flow cytometry assay, respectively. The binding relationship between miR-145-5p and circ_0005667 or IGF2BP1 was verified by dual-luciferase reporter assay. A xenograft experiment was applied to clarify the functional role of circ_0005667 in vivo . RESULTS: Levels of circ_0005667 and IGF2BP1 were markedly increased, whereas miR-145-5p was downregulated in DDP-resistant EC tissues and cells. The circ_0005667 deficiency could enhance DDP sensitivity, inhibit cell proliferation, migration and invasion and promote cell apoptosis in DDP-resistant EC cells in vitro . Mechanistically, circ_0005667 modulated IGF2BP1 expression through sponging miR-145-5p. In addition, miR-145-5p depletion attenuated circ_0005667 silencing-induced effects in EC cells. The regulation of miR-145-5p in DDP resistance involved low IGF2BP1 expression. In vivo experiments revealed that circ_0005667 silencing could improve the sensitivity of the tumor to DDP. CONCLUSION: Circ_0005667 enhanced DDP resistance in EC by elevating IGF2BP1 through sponging miR-145-5p.


Sujet(s)
Tumeurs de l'endomètre , microARN , Humains , Femelle , ARN circulaire/génétique , Cisplatine/pharmacologie , Tumeurs de l'endomètre/traitement médicamenteux , Tumeurs de l'endomètre/génétique , Apoptose , Prolifération cellulaire , microARN/génétique , Résistance aux médicaments antinéoplasiques/génétique
6.
iScience ; 25(6): 104391, 2022 Jun 17.
Article de Anglais | MEDLINE | ID: mdl-35637731

RÉSUMÉ

Canavan disease (CD) is a devastating neurological disease that lacks effective therapy. Because CD is caused by mutations of the aspartoacylase (ASPA) gene, we introduced the wild-type (WT) ASPA gene into patient iPSCs through lentiviral transduction or CRISPR/Cas9-mediated gene editing. We then differentiated the WT ASPA-expressing patient iPSCs (ASPA-CD iPSCs) into NPCs and showed that the resultant ASPA-CD NPCs exhibited potent ASPA enzymatic activity. The ASPA-CD NPCs were able to survive in brains of transplanted CD mice. The engrafted ASPA-CD NPCs reconstituted ASPA activity in CD mouse brains, reduced the abnormally elevated level of NAA in both brain tissues and cerebrospinal fluid (CSF), and rescued hallmark pathological phenotypes of the disease, including spongy degeneration, myelination defects, and motor function impairment in transplanted CD mice. These genetically modified patient iPSC-derived NPCs represent a promising cell therapy candidate for CD, a disease that has neither a cure nor a standard treatment.

7.
iScience ; 25(1): 103684, 2022 Jan 21.
Article de Anglais | MEDLINE | ID: mdl-34977495

RÉSUMÉ

The COVID-19 outbreak poses a serious threat to global public health. Effective countermeasures and approved therapeutics are desperately needed. In this study, we screened a small molecule library containing the NCI-DTP compounds to identify molecules that can prevent SARS-CoV-2 cellular entry. By applying a luciferase assay-based screening using a pseudotyped SARS-CoV-2-mediated cell entry assay, we identified a small molecule compound Q34 that can efficiently block cellular entry of the pseudotyped SARS-CoV-2 into human ACE2-expressing HEK293T cells, and inhibit the infection of the authentic SARS-CoV-2 in human ACE2-expressing HEK293T cells, human iPSC-derived neurons and astrocytes, and human lung Calu-3 cells. Importantly, the safety profile of the compound is favorable. There is no obvious toxicity observed in uninfected cells treated with the compound. Thus, this compound holds great potential as both prophylactics and therapeutics for COVID-19 and future pandemics by blocking the entry of SARS-CoV-2 and related viruses into human cells.

8.
Sci Rep ; 11(1): 17146, 2021 08 25.
Article de Anglais | MEDLINE | ID: mdl-34433867

RÉSUMÉ

The transcriptome of SARS-CoV-2-infected cells that reflects the interplay between host and virus has provided valuable insights into mechanisms underlying SARS-CoV-2 infection and COVID-19 disease progression. In this study, we show that SARS-CoV-2 can establish a robust infection in HEK293T cells that overexpress human angiotensin-converting enzyme 2 (hACE2) without triggering significant host immune response. Instead, endoplasmic reticulum stress and unfolded protein response-related pathways are predominantly activated. By comparing our data with published transcriptome of SARS-CoV-2 infection in other cell lines, we found that the expression level of hACE2 directly correlates with the viral load in infected cells but not with the scale of immune responses. Only cells that express high level of endogenous hACE2 exhibit an extensive immune attack even with a low viral load. Therefore, the infection route may be critical for the extent of the immune response, thus the severity of COVID-19 disease status.


Sujet(s)
Analyse de profil d'expression de gènes , Immunité innée/génétique , SARS-CoV-2/physiologie , Cellules HEK293 , Humains , SARS-CoV-2/immunologie
9.
Cell Stem Cell ; 28(2): 331-342.e5, 2021 02 04.
Article de Anglais | MEDLINE | ID: mdl-33450186

RÉSUMÉ

ApoE4, a strong genetic risk factor for Alzheimer disease, has been associated with increased risk for severe COVID-19. However, it is unclear whether ApoE4 alters COVID-19 susceptibility or severity, and the role of direct viral infection in brain cells remains obscure. We tested the neurotropism of SARS-CoV2 in human-induced pluripotent stem cell (hiPSC) models and observed low-grade infection of neurons and astrocytes that is boosted in neuron-astrocyte co-cultures and organoids. We then generated isogenic ApoE3/3 and ApoE4/4 hiPSCs and found an increased rate of SARS-CoV-2 infection in ApoE4/4 neurons and astrocytes. ApoE4 astrocytes exhibited enlarged size and elevated nuclear fragmentation upon SARS-CoV-2 infection. Finally, we show that remdesivir treatment inhibits SARS-CoV2 infection of hiPSC neurons and astrocytes. These findings suggest that ApoE4 may play a causal role in COVID-19 severity. Understanding how risk factors impact COVID-19 susceptibility and severity will help us understand the potential long-term effects in different patient populations.


Sujet(s)
Apolipoprotéines E/métabolisme , Encéphale/anatomopathologie , Encéphale/virologie , COVID-19/virologie , Cellules souches pluripotentes induites/virologie , SARS-CoV-2/physiologie , Tropisme/physiologie , AMP/analogues et dérivés , AMP/pharmacologie , Alanine/analogues et dérivés , Alanine/pharmacologie , Animaux , Antiviraux/pharmacologie , Astrocytes/effets des médicaments et des substances chimiques , Astrocytes/anatomopathologie , Astrocytes/virologie , Différenciation cellulaire , Chlorocebus aethiops , Humains , Dégénérescence nerveuse/anatomopathologie , Neurites/anatomopathologie , Neurones/effets des médicaments et des substances chimiques , Neurones/anatomopathologie , Neurones/virologie , Organoïdes/effets des médicaments et des substances chimiques , Organoïdes/anatomopathologie , Organoïdes/virologie , Isoformes de protéines/métabolisme , Synapses/anatomopathologie , Cellules Vero
10.
Nat Cancer ; 2(9): 932-949, 2021 09.
Article de Anglais | MEDLINE | ID: mdl-35121864

RÉSUMÉ

Pseudouridine is the most frequent epitranscriptomic modification. However, its cellular functions remain largely unknown. Here, we show that pseudouridine synthase 7 (PUS7) is highly expressed in glioblastoma versus normal brain tissues, and high PUS7 expression levels are associated with worse survival in patients with glioblastoma. PUS7 expression and catalytic activity are required for glioblastoma stem cell (GSC) tumorigenesis. Mechanistically, we identify PUS7 targets in GSCs through small RNA pseudouridine sequencing and show that pseudouridylation of PUS7-regulated transfer RNA is critical for codon-specific translational control of key regulators of GSCs. Moreover, we identify chemical inhibitors for PUS7 and show that these compounds prevent PUS7-mediated pseudouridine modification, suppress tumorigenesis and extend the life span of tumor-bearing mice. Overall, we identify an epitranscriptomic regulatory mechanism in glioblastoma and provide preclinical evidence of a potential therapeutic strategy for glioblastoma.


Sujet(s)
Glioblastome , Intramolecular transferases , Animaux , Carcinogenèse/génétique , Transformation cellulaire néoplasique , Glioblastome/génétique , Humains , Intramolecular transferases/composition chimique , Souris , Pseudouridine/génétique , ARN de transfert/génétique
11.
Adv Sci (Weinh) ; 7(23): 2002155, 2020 Dec.
Article de Anglais | MEDLINE | ID: mdl-33304759

RÉSUMÉ

Canavan disease (CD) is a fatal leukodystrophy caused by mutation of the aspartoacylase (ASPA) gene, which leads to deficiency in ASPA activity, accumulation of the substrate N-acetyl-L-aspartate (NAA), demyelination, and spongy degeneration of the brain. There is neither a cure nor a standard treatment for this disease. In this study, human induced pluripotent stem cell (iPSC)-based cell therapy is developed for CD. A functional ASPA gene is introduced into patient iPSC-derived neural progenitor cells (iNPCs) or oligodendrocyte progenitor cells (iOPCs) via lentiviral transduction or TALEN-mediated genetic engineering to generate ASPA iNPC or ASPA iOPC. After stereotactic transplantation into a CD (Nur7) mouse model, the engrafted cells are able to rescue major pathological features of CD, including deficient ASPA activity, elevated NAA levels, extensive vacuolation, defective myelination, and motor function deficits, in a robust and sustainable manner. Moreover, the transplanted mice exhibit much prolonged survival. These genetically engineered patient iPSC-derived cellular products are promising cell therapies for CD. This study has the potential to bring effective cell therapies, for the first time, to Canavan disease children who have no treatment options. The approach established in this study can also benefit many other children who have deadly genetic diseases that have no cure.

12.
Sci Total Environ ; 651(Pt 1): 344-356, 2019 Feb 15.
Article de Anglais | MEDLINE | ID: mdl-30240918

RÉSUMÉ

Major and trace elemental concentrations in coastal marine sediments were incorporated into positive matrix factorization (PMF) to identify potential sources and source contributions. Transport pathways of fine-grained sediments and sediment-bound elements were inferred from sediment trend analysis (STA). The spatial distribution patterns of 21 elements (Co, Cu, Ni, Sr, Zn, V, Ba, Sc, Ga, Pb, Cr, Zr, SiO2, Al2O3, Fe2O3, MgO, CaO, K2O, MnO, TiO2, and P2O5) coupled with sediment grain sizes were investigated. The natural and anthropogenic sources of the elements were distinguished by their medium enrichment factors (EFs). Seven sources were recognized by PMF: weathering products, anthropologic emissions, sand, older sediment, biogenic carbonates, products of siliceous organisms, and mine exploitation. Some land-derived elements, including weathering products, anthropogenic-related elements, and mining-related elements, had a significant positive correlation with sediment silt, clay, and organic carbon contents. The spatial patterns of the land-derived elements' concentrations and source contributions were consistent with the sediment transport pathways inferred from the STA. This result revealed that the delivery of the land-derived elements was determined by marine current flows and the associated sediment transport processes. Conversely, elements originating from marine sources, such as sand and older sediment, and from the biological activities of calcareous and siliceous organisms showed little response to sediment transport and deposition processes. Our study links the outputs of statistically oriented approaches (e.g., PMF) to a process-based understanding of elemental transport in marine environments.

13.
Zhonghua Nan Ke Xue ; 24(8): 681-685, 2018 08.
Article de Chinois | MEDLINE | ID: mdl-30173424

RÉSUMÉ

Objective: To investigate the value of micro- dissection testicular sperm extraction (micro-TESE) in the treatment of non-obstructive azoospermia (NOA) in patients with the history of secondary testicular injury. METHODS: Totally, 121 NOA patients with the history of secondary testicular injury underwent micro-TESE in our hospital from September 2014 to December 2017. We analyzed the correlation of the sperm retrieval rate with the causes of testicular injury and compared the outcomes of the ICSI cycles with the sperm retrieved from the NOA males by micro-TESE (the micro-TESE group) and those with the sperm ejaculated from severe oligospermia patients (sperm concentration <1×106/ml, the ejaculate group). Comparisons were also made between the two groups in the female age, two-pronucleus (2PN) fertilization rate, transferrable embryos on day 3 (D3), D3 high- quality embryos, D14 blood HCG positive rate, embryo implantation rate, and clinical pregnancy rate. RESULTS: Testicular sperm were successfully retrieved by micro-TESE in 86.0% of the patients (104/121), of whom 98.4% had the history of orchitis, 75.5% had been treated surgically for cryptorchidism, and 63.6% had received chemo- or radiotherapy. No statistically significant differences were observed between the micro-TESE and ejaculate groups in the 2PN fertilization rate (59.4% vs 69.3%, P > 0.05), D14 blood HCG positive rate (44.6% vs 57.9%, P > 0.05), embryo implantation rate (31.8 %% vs 32.6%, P > 0.05) and clinical pregnancy rate (41.5% vs 48.7%, P > 0.05). However, the rate D3 transferrable embryos was significantly lower in the micro-TESE than in the ejaculate group (40.5% vs 52.2%,P < 0.05), and so was that of D3 high-quality embryos (32.5% vs 42.1%, P < 0.05). CONCLUSIONS: Micro-TESE can be applied as the first choice for NOA patients with the history of secondary testicular injury, but more effective strategies are to be explored for the improvement of ICSI outcomes with the sperm retrieved by micro- TESE.


Sujet(s)
Azoospermie/étiologie , Éjaculation , Prélèvement de sperme , Testicule/traumatismes , Cryptorchidie/chirurgie , Implantation embryonnaire , Transfert d'embryon , Femelle , Humains , Mâle , Orchite , Grossesse , Taux de grossesse , Numération des spermatozoïdes
14.
Cell Stem Cell ; 23(2): 239-251.e6, 2018 Aug 02.
Article de Anglais | MEDLINE | ID: mdl-30075130

RÉSUMÉ

Alexander disease (AxD) is a leukodystrophy that primarily affects astrocytes and is caused by mutations in the astrocytic filament gene GFAP. While astrocytes are thought to have important roles in controlling myelination, AxD animal models do not recapitulate critical myelination phenotypes and it is therefore not clear how AxD astrocytes contribute to leukodystrophy. Here, we show that AxD patient iPSC-derived astrocytes recapitulate key features of AxD pathology such as GFAP aggregation. Moreover, AxD astrocytes inhibit proliferation of human iPSC-derived oligodendrocyte progenitor cells (OPCs) in co-culture and reduce their myelination potential. CRISPR/Cas9-based correction of GFAP mutations reversed these phenotypes. Transcriptomic analyses of AxD astrocytes and postmortem brains identified CHI3L1 as a key mediator of AxD astrocyte-induced inhibition of OPC activity. Thus, this iPSC-based model of AxD not only recapitulates patient phenotypes not observed in animal models, but also reveals mechanisms underlying disease pathology and provides a platform for assessing therapeutic interventions.


Sujet(s)
Maladie d'Alexander/génétique , Maladie d'Alexander/anatomopathologie , Astrocytes/métabolisme , Protéine gliofibrillaire acide/génétique , Cellules souches pluripotentes induites/métabolisme , Modèles biologiques , Mutation , Précurseurs des oligodendrocytes/anatomopathologie , Maladie d'Alexander/métabolisme , Animaux , Prolifération cellulaire , Cellules cultivées , Protéine gliofibrillaire acide/métabolisme , Cellules souches pluripotentes induites/anatomopathologie , Souris , Souris knockout , Précurseurs des oligodendrocytes/métabolisme
15.
Sci Total Environ ; 628-629: 1446-1459, 2018 Jul 01.
Article de Anglais | MEDLINE | ID: mdl-30045564

RÉSUMÉ

Self-organizing map (SOM) was used to explore the spatial characteristics of water quality in the middle and southern Fujian coastal area. Nineteen water quality variables (temperature, salinity, pH, dissolved oxygen, alkalinity, chemical oxygen demand, nutrients NH4-N, H2SiO3, PO4-, NO2-, and NO3-, heavy metals/metalloid Cu, Zn, As, Cd, Pb, Hg, and Cr6+, and oil) were measured in the surface, middle, and bottom water layers at 94 different sampling sites. Patterns of water quality variables were visualized by the SOM planes, and similar patterns were observed for those variables that correlated with each other, indicating a common source. pH, COD, As, Hg, Pb, and Cr6+ likely originated from industries, while nutrients NH4-N, NO2-, NO3-, and PO43- were mainly attributed to agriculture and aquaculture. The k-means clustering in the SOM grouped the water quality data into nine clusters, which revealed three representative water types, ranging from low salinity to high salinity with different levels of heavy metal/metalloid pollution and nutrient pollution. Spatial changes in water quality reflected the impacts of natural factors (riverine outflows, tides, and alongshore currents), as well as anthropogenic activities (mariculture, industrial and urban discharges, and agricultural effluents). Principal component analysis (PCA) confirmed the clustering results obtained by SOM, while the latter provides a more detailed classification and additional information about the dominant variables governing the classification processes. The results of this study suggest that SOM is an effective tool for a better understanding of patterns and processes driving water quality.

16.
Nucleic Acids Res ; 46(13): 6806-6822, 2018 07 27.
Article de Anglais | MEDLINE | ID: mdl-29718312

RÉSUMÉ

It has been reported that the two major types of RNA interference triggers, the classical Dicer-generated small RNAs (siRNAs), which function with all members of the Argonaute (Ago) protein family in mammals, and the Ago2-sliced small RNAs (sli-siRNAs), which function solely through Ago2, have similar potency in target cleavage and repression. Here, we show that sli-siRNAs are generally more potent than siRNAs in silencing mismatched targets. This phenomenon is usually more apparent in targets that have mismatched nucleotides in the 3' supplementary region than in targets with mismatches in the seed region. We demonstrate that Ago2 slicer activity is a major factor contributing to the greater silencing efficiency of sli-siRNA against mismatched targets and that participation of non-slicing Agos in silencing mismatched siRNA targets may dilute the slicing ability of Ago2. The difference in length of the mature guide RNA used in sli-RISCs and si-RISCs may also contribute to the observed difference in knockdown efficiency. Our data suggest that a sli-siRNA guide strand is likely to have substantially stronger off-target effects than a guide strand with the same sequence in a classical siRNA and that Dicer and non-slicing Agos may play pivotal roles in controlling siRNA target specificity.


Sujet(s)
Mésappariement de bases , Interférence par ARN , Petit ARN interférent/métabolisme , Animaux , Protéines Argonaute/métabolisme , Lignée cellulaire tumorale , Cellules cultivées , Cellules HEK293 , Humains , Souris , microARN/composition chimique , microARN/métabolisme , Maturation post-transcriptionnelle des ARN , Petit ARN interférent/composition chimique , Complexe réprimant l'expression de l'ARN/métabolisme , Ribonuclease III/métabolisme
17.
Mol Ther Nucleic Acids ; 8: 345-355, 2017 Sep 15.
Article de Anglais | MEDLINE | ID: mdl-28918034

RÉSUMÉ

We have studied the molecular properties of in-vitro-transcribed sliced small interfering RNAs (tsli-siRNAs) as an alternative RNAi agent for chemically synthesized siRNA. We describe here a simple and cost-effective procedure for high-purity production of tsli-siRNA using bacteriophage T7 RNA polymerases. tsli-siRNAs exhibit potent gene knockdown effects, with efficacy comparable with that of chemically synthesized sli-siRNAs and classical siRNAs. Furthermore, we found that it is very easy to prepare potent tsli-siRNAs with modified bases, such as 2'-fluorine- or biotin-16-modified tsli-siRNAs. tsli-siRNAs can cause a mild innate immune response, which can be easily eliminated by alkaline phosphatase treatment. On the other hand, this feature, which can be useful as a trigger of the innate immune response, can be enhanced by polynucleotide kinase treatment. Because of the simplicity of preparation and purification, the procedure presented here could be useful for the production of RNAi or immunostimulatory reagents.

18.
Cell Rep ; 18(11): 2622-2634, 2017 03 14.
Article de Anglais | MEDLINE | ID: mdl-28297667

RÉSUMÉ

RNA modifications play critical roles in important biological processes. However, the functions of N6-methyladenosine (m6A) mRNA modification in cancer biology and cancer stem cells remain largely unknown. Here, we show that m6A mRNA modification is critical for glioblastoma stem cell (GSC) self-renewal and tumorigenesis. Knockdown of METTL3 or METTL14, key components of the RNA methyltransferase complex, dramatically promotes human GSC growth, self-renewal, and tumorigenesis. In contrast, overexpression of METTL3 or inhibition of the RNA demethylase FTO suppresses GSC growth and self-renewal. Moreover, inhibition of FTO suppresses tumor progression and prolongs lifespan of GSC-grafted mice substantially. m6A sequencing reveals that knockdown of METTL3 or METTL14 induced changes in mRNA m6A enrichment and altered mRNA expression of genes (e.g., ADAM19) with critical biological functions in GSCs. In summary, this study identifies the m6A mRNA methylation machinery as promising therapeutic targets for glioblastoma.


Sujet(s)
Adénosine/analogues et dérivés , Carcinogenèse/anatomopathologie , Auto-renouvellement cellulaire , Glioblastome/anatomopathologie , Cellules souches tumorales/anatomopathologie , ARN/métabolisme , Adénosine/métabolisme , Alpha-ketoglutarate-dependent dioxygenase FTO/antagonistes et inhibiteurs , Alpha-ketoglutarate-dependent dioxygenase FTO/métabolisme , Animaux , Séquence nucléotidique , Tumeurs du cerveau/génétique , Tumeurs du cerveau/anatomopathologie , Carcinogenèse/effets des médicaments et des substances chimiques , Différenciation cellulaire/effets des médicaments et des substances chimiques , Différenciation cellulaire/génétique , Prolifération cellulaire/effets des médicaments et des substances chimiques , Auto-renouvellement cellulaire/effets des médicaments et des substances chimiques , Auto-renouvellement cellulaire/génétique , Évolution de la maladie , Régulation de l'expression des gènes tumoraux/effets des médicaments et des substances chimiques , Techniques de knock-down de gènes , Glioblastome/génétique , Humains , Acide méclofénamique/pharmacologie , Méthylation , Methyltransferases/métabolisme , Souris , Cellules souches tumorales/effets des médicaments et des substances chimiques , Cellules souches tumorales/métabolisme , ARN messager/génétique , ARN messager/métabolisme
19.
Mar Pollut Bull ; 112(1-2): 166-176, 2016 Nov 15.
Article de Anglais | MEDLINE | ID: mdl-27531142

RÉSUMÉ

Concentration, spatial distribution, composition and sources of polycyclic aromatic hydrocarbons (PAHs) were investigated based on measurements of 16 PAH compounds in surface sediments of the western Taiwan Strait. Total PAH concentrations ranged from 2.41 to 218.54ngg-1. Cluster analysis identified three site clusters representing the northern, central and southern regions. Sedimentary PAHs mainly originated from a mixture of pyrolytic and petrogenic in the north, from pyrolytic in the central, and from petrogenic in the south. An end-member mixing model was performed using PAH compound data to estimate mixing proportions for unknown end-members (i.e., extreme-value sample points) proposed by principal component analysis (PCA). The results showed that the analyzed samples can be expressed as mixtures of three end-members, and the mixing of different end-members was strongly related to the transport pathway controlled by two currents, which alternately prevail in the Taiwan Strait during different seasons.


Sujet(s)
Surveillance de l'environnement , Hydrocarbures aromatiques polycycliques/analyse , Polluants chimiques de l'eau/analyse , Analyse de regroupements , Sédiments géologiques/analyse , Analyse en composantes principales , Saisons , Taïwan
20.
Cell Rep ; 16(3): 781-92, 2016 07 19.
Article de Anglais | MEDLINE | ID: mdl-27396343

RÉSUMÉ

Growing evidence indicates important roles for astrocytes in neurodevelopment and diseases. However, astrocytes and their roles in these processes remain poorly understood. Despite recent progress in reprogramming somatic cells into different types of neural cells, reprogramming to astrocytes has lagged. Here, we show that functional astrocytes can be generated from mammalian fibroblasts using only small molecules. Induced mouse astrocytes resemble primary astrocytes in astrocytic gene expression and epigenomic status and exhibit functional properties in promoting neuronal maturation, glutamate uptake, and calcium signaling. Moreover, these cells can recapitulate the Alexander disease phenotype of protein aggregation when expressing Gfap with a disease-causing mutation. The same compounds can also reprogram human fibroblasts into astroglial progenitor cells that can further mature into functional astrocytes. These chemically induced astrocytes may provide cellular models to uncover roles of astrocytes in normal neurodevelopment and pathogenesis of neurological diseases.


Sujet(s)
Astrocytes/physiologie , Reprogrammation cellulaire/physiologie , Maladie d'Alexander/métabolisme , Maladie d'Alexander/anatomopathologie , Animaux , Astrocytes/métabolisme , Signalisation calcique/physiologie , Différenciation cellulaire/physiologie , Cellules cultivées , Techniques de coculture , Épigénomique/méthodes , Fibroblastes/métabolisme , Fibroblastes/physiologie , Expression des gènes/physiologie , Protéine gliofibrillaire acide/métabolisme , Acide glutamique/métabolisme , Humains , Souris , Souris transgéniques , Mutation/physiologie , Neurogenèse/physiologie , Neurones/métabolisme , Neurones/physiologie , Agrégation pathologique de protéines/anatomopathologie , Cellules souches/métabolisme , Cellules souches/physiologie
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