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1.
Sci Rep ; 14(1): 2698, 2024 02 01.
Article de Anglais | MEDLINE | ID: mdl-38302681

RÉSUMÉ

A novel bacterium, designated strain MMK2T, was isolated from a surface-sterilised root nodule of a Trifolium rubens plant growing in south-eastern Poland. Cells were Gram negative, non-spore forming and rod shaped. The strain had the highest 16S rRNA gene sequence similarity with P. endophytica (99.4%), P. leporis (99.4%) P. rwandensis (98.8%) and P. rodasii (98.45%). Phylogenomic analysis clearly showed that strain MMK2T and an additional strain, MMK3, should reside in the genus Pantoea and that they were most closely related to P. endophytica and P. leporis. Genome comparisons showed that the novel strain shared 82.96-93.50% average nucleotide identity and 26.2-53. 2% digital DNA:DNA hybridization with closely related species. Both strains produced siderophores and were able to solubilise phosphates. The MMK2T strain was also able to produce indole-3-acetic acid. The tested strains differed in their antimicrobial activity, but both were able to inhibit the growth of Sclerotinia sclerotiorum 10Ss01. Based on the results of the phenotypic, phylogenomic, genomic and chemotaxonomic analyses, strains MMK2T and MMK3 belong to a novel species in the genus Pantoea for which the name Pantoea trifolii sp. nov. is proposed with the type strain MMK2T (= DSM 115063T = LMG 33049T).


Sujet(s)
Pantoea , Trifolium , Analyse de séquence d'ADN , Pantoea/génétique , Trifolium/génétique , ARN ribosomique 16S/génétique , ADN , Phylogenèse , ADN bactérien/génétique , Acides gras/analyse , Techniques de typage bactérien , Hybridation d'acides nucléiques
2.
J Inflamm Res ; 16: 5039-5060, 2023.
Article de Anglais | MEDLINE | ID: mdl-37933334

RÉSUMÉ

Purpose: Allergic diseases have reached epidemic proportions globally, affecting nearly 30% of the world's population. One of the most prominent sources of allergens is fungi, causing up to 6% of respiratory diseases in the general population. However, the cause of respiratory allergies is not always identifiable. Therefore, we studied the ability of two representatives of common powdery mildew (Erysiphales), Erysiphe palczewskii and Erysiphe convolvuli, to induce a proinflammatory response in in vitro models of the upper and lower respiratory tract. Materials and Methods: Two cell lines, BEAS-2B and A549, were used to mimic upper and lower respiratory epithelial cells. The toxicity of fungal extracts was assessed with MTT and flow cytometry assay. The production of reactive oxygen species in the cells was measured with flow cytometry. ELISA tests were used to determine the production of proinflammatory cytokines. The presence of the cell integrity marker was assessed with the immunofluorescence method. Results: In both cell lines, the extract of E. palczewskii and E. convolvuli microfungi induced marked production of proinflammatory IL-1ß, TNF-α, and GM-CSF cytokines involved in developing allergic reactions. The higher levels of these cytokines with higher reactive oxygen species synthesis positively correlated with the disruption of epithelial cell junctions. Conclusion: We conclude that E. palczewskii and E. convolvuli microfungi have strong proinflammatory and proallergenic potential, but this finding needs in vivo confirmation.

3.
Molecules ; 28(22)2023 Nov 14.
Article de Anglais | MEDLINE | ID: mdl-38005303

RÉSUMÉ

Polycyclic aromatic hydrocarbons (PAHs) are common xenobiotics that are detrimental to the environment and human health. Bacterial endophytes, having the capacity to degrade PAHs, and plant growth promotion (PGP) may facilitate their biodegradation. In this study, phenanthrene (PHE) utilization of a newly isolated PGP endophytic strain of Pseudomonas chlororaphis 23aP and factors affecting the process were evaluated. The data obtained showed that strain 23aP utilized PHE in a wide range of concentrations (6-100 ppm). Ethyl-acetate-extractable metabolites obtained from the PHE-enriched cultures were analyzed by gas chromatography-mass spectrometry (GC-MS) and thin-layer chromatography (HPTLC). The analysis identified phthalic acid, 3-(1-naphthyl)allyl alcohol, 2-hydroxybenzalpyruvic acid, α-naphthol, and 2-phenylbenzaldehyde, and allowed us to propose that the PHE degradation pathway of strain 23aP is initiated at the 1,2-, 3,4-carbon positions, while the 9,10-C pathway starts with non-enzymatic oxidation and is continued by the downstream phthalic pathway. Moreover, the production of the biosurfactants, mono- (Rha-C8-C8, Rha-C10-C8:1, Rha-C12:2-C10, and Rha-C12:1-C12:1) and dirhamnolipids (Rha-Rha-C8-C10), was confirmed using direct injection-electrospray ionization-mass spectrometry (DI-ESI-MS) technique. Changes in the bacterial surface cell properties in the presence of PHE of increased hydrophobicity were assessed with the microbial adhesion to hydrocarbons (MATH) assay. Altogether, this suggests the strain 23aP might be used in bioaugmentation-a biological method supporting the removal of pollutants from contaminated environments.


Sujet(s)
Phénanthrènes , Hydrocarbures aromatiques polycycliques , Pseudomonas chlororaphis , Humains , Pseudomonas chlororaphis/métabolisme , Phénanthrènes/métabolisme , Hydrocarbures aromatiques polycycliques/métabolisme , Spectrométrie de masse ESI , Bactéries/métabolisme , Dépollution biologique de l'environnement
4.
Environ Sci Pollut Res Int ; 29(55): 83567-83579, 2022 Nov.
Article de Anglais | MEDLINE | ID: mdl-35768711

RÉSUMÉ

The effectiveness of phytoremediation is closely related to the various interactions between pollutants, soil particles, rhizosphere microorganisms, and plants. Therefore, the object of current study was a cadmium-tolerant bacterium isolated from the rye rhizosphere, with a high degree of genetic similarity to the genus Chryseobacterium. Chryseobacterium sp. DEMBc1 was able to grow with 36 different BiologGN2 carbon sources and show the adaptation to stress factors such as Cd (100 µg ml-1), low temperature (8 °C), and salinity (2% NaCl). Furthermore, it was shown that DEMBc1 had the characteristics of plant growth-promoting microorganisms: it was able to produce ammonia, indole acetic acid, 1-aminocyclopropane-1-carboxylic acid deaminase, and siderophores, as well as solubilize Ca3(PO4)3. After inoculation with DEMBc1, a significant decrease in the concentration of Cd was observed in the roots of Festuca ovina grown in Cd-polluted soil, compared to the non-inoculated Cd-polluted soil. It was also noticed that DEMBc1 produced a large amount of extracellular polymeric substances that were significantly higher than the cellular biomass. These polymers can form a barrier to reduce the translocation of Cd from the growth medium to the plant roots. According to the current study, DEMBc1 has a stabilizing potential and can decrease the mobility of Cd in the F. ovina rhizosphere, bioaccumulate metals in plant tissues, and effectively improve the bioavailability of nutrients, especially Fe, N, and P in a polluted environments.


Sujet(s)
Chryseobacterium , Polluants du sol , Cadmium , Dépollution biologique de l'environnement , Polluants du sol/analyse , Rhizosphère , Sol , Racines de plante/composition chimique , Plantes/microbiologie , Microbiologie du sol
5.
Int J Mol Sci ; 22(17)2021 Sep 03.
Article de Anglais | MEDLINE | ID: mdl-34502466

RÉSUMÉ

Anthropogenic activities generate a high quantity of organic pollutants, which have an impact on human health and cause adverse environmental effects. Monitoring of many hazardous contaminations is subject to legal regulations, but some substances such as therapeutic agents, personal care products, hormones, and derivatives of common organic compounds are currently not included in these regulations. Classical methods of removal of organic pollutants involve economically challenging processes. In this regard, remediation with biological agents can be an alternative. For in situ decontamination, the plant-based approach called phytoremediation can be used. However, the main disadvantages of this method are the limited accumulation capacity of plants, sensitivity to the action of high concentrations of hazardous pollutants, and no possibility of using pollutants for growth. To overcome these drawbacks and additionally increase the efficiency of the process, an integrated technology of bacteria-assisted phytoremediation is being used recently. For the system to work, it is necessary to properly select partners, especially endophytes for specific plants, based on the knowledge of their metabolic abilities and plant colonization capacity. The best approach that allows broad recognition of all relationships occurring in a complex community of endophytic bacteria and its variability under the influence of various factors can be obtained using culture-independent techniques. However, for practical application, culture-based techniques have priority.


Sujet(s)
Bactéries/métabolisme , Endophytes/métabolisme , Polluants environnementaux/métabolisme , Plantes , Dépollution biologique de l'environnement , Plantes/métabolisme , Plantes/microbiologie
6.
Acta Biochim Pol ; 68(3): 419-426, 2021 Aug 24.
Article de Anglais | MEDLINE | ID: mdl-34428005

RÉSUMÉ

Chamaecytisus albus (Spanish broom) is a legume shrub that can be found in only one natural locality in Poland. This specimen is critically endangered; therefore, different actions focusing on protection of this plant in the natural habitat are undertaken, and one of them involves studies of the population of Chamaecytisus albus bacterial endophytes, which in the future could be used as bioprotectants and/or biofertilizers. A collection of 94 isolates was obtained from Spanish broom nodules, and the physiological and genetic diversity of these strains was studied. A few potentially beneficial traits were detected, i.e. secretion of cellulases (66 isolates), production of siderophores (60 isolates), phosphate solubilization (25 isolates), and production of IAA (58 isolates), indole (16 isolates), or HCN (3 isolates). Twenty-nine of the 94 tested isolates were able to induce the development of root nodules in plants grown in vitro and can therefore be assumed as Chamaecytisus albus symbionts. Genome fingerprinting by BOX-PCR, as well as gyrB and nodZ gene sequencing revealed a great genetic diversity of specimens in the collection. The symbiotic isolates were classified in different clades, suggesting they could belong to different species, however, most of them revealed sequence similarity to Bradyrhizobium genus.


Sujet(s)
Bactéries/isolement et purification , Endophytes/génétique , Endophytes/isolement et purification , Spartium/microbiologie , Bactéries/classification , Bactéries/génétique , Bradyrhizobium/génétique , Bradyrhizobium/isolement et purification , Cellulases/métabolisme , ADN bactérien/génétique , Engrais , Phylogenèse , Racines de plante/microbiologie , Pologne , Réaction de polymérisation en chaîne/méthodes , Analyse de séquence d'ADN , Sidérophores/métabolisme , Spartium/génétique , Symbiose/génétique
7.
Future Microbiol ; 15: 1015-1032, 2020 07.
Article de Anglais | MEDLINE | ID: mdl-32811181

RÉSUMÉ

Aim: This study investigated the effect of an insect antimicrobial protein, apolipophorin III (apoLp-III), against two newly isolated, identified and characterized clinical strains of Staphylococcus spp. Materials & methods: Both strains were identified by 16S rRNA sequencing and metabolic and phenotypic profiling. The antibacterial activity of apoLp-III was tested using a colony counting assay. ApoLp-III interaction with bacterial cell surface was analyzed by Fourier transform IR spectroscopy. Results:Staphylococcus epidermidis and Staphylococcus capitis were identified. ApoLp-III exerted a dose-dependent bactericidal effect on the tested strains. The differences in the Staphylococcus spp. surface components may contribute to the various sensitivities of these strains to apoLp-III. Conclusion: ApoLp-III may provide a baseline for development of antibacterial preparations against Staphylococcus spp. involved in dermatological problems.


Sujet(s)
Antibactériens/pharmacologie , Apolipoprotéines/pharmacologie , Protéines d'insecte/pharmacocinétique , Infections cutanées à staphylocoques/microbiologie , Staphylococcus/effets des médicaments et des substances chimiques , Staphylococcus/isolement et purification , Animaux , Antibactériens/composition chimique , Apolipoprotéines/composition chimique , Humains , Protéines d'insecte/composition chimique , Protéines d'insecte/pharmacologie , Tests de sensibilité microbienne , Papillons de nuit , Staphylococcus/génétique , Staphylococcus/croissance et développement
8.
Acta Vet Hung ; 68(1): 12-19, 2020 03.
Article de Anglais | MEDLINE | ID: mdl-32384066

RÉSUMÉ

The aim of the study was to assess the incidence, resistance, virulence, and genotypic characteristics of Staphylococcus spp. residing in the gastrointestinal tract of dogs and cats, as a group of animals causing potential contamination of the urban space. A high percentage of strains resistant to penicillin (58%), oxacillin (9%) and tetracycline (60%) were found. All isolates resistant to penicillin, kanamycin, or chloramphenicol carried genes responsible for individual resistance (blaZ, aph(3')-IIIa, and cat (pC194)/cat (pC223), respectively. The mecA gene was detected in 45% of the oxacillin-resistant Staphylococcus pseudintermedius strains. The amplification of DNA fragments surrounding rare restriction sites analysis demonstrated high heterogeneity of genotypic profiles correlating with phenotypic resistance profiles. Multilocus sequence typing analysis classified the methicillin-resistant S. pseudintermedius strains as ST71, ST890, and the totally new ST1047. The presence of a high level of resistance among Staphylococcus strains may suggest a potential risk of transfer of these bacteria between companion animals and humans.


Sujet(s)
Maladies des chats/épidémiologie , Maladies des chiens/épidémiologie , Résistance bactérienne aux médicaments , Résistance à la méticilline , Infections à staphylocoques/médecine vétérinaire , Staphylococcus/isolement et purification , Staphylococcus/pathogénicité , Animaux , Anti-infectieux/pharmacologie , Maladies des chats/microbiologie , Chats , Villes , Maladies des chiens/microbiologie , Chiens , Fèces/microbiologie , Variation génétique , Génotype , Incidence , Pologne/épidémiologie , Infections à staphylocoques/épidémiologie , Infections à staphylocoques/microbiologie , Staphylococcus/effets des médicaments et des substances chimiques , Staphylococcus/génétique , Virulence
9.
Pathog Dis ; 77(7)2019 10 01.
Article de Anglais | MEDLINE | ID: mdl-31778176

RÉSUMÉ

Legionella species synthesize phosphatidylcholine (PC) in two independent pathways: the three-step methylation of phosphatidylethanolamine PMT pathway and the one-step PCS pathway, in which the Pcs enzyme catalyzes the reaction between choline and CDP-diacylglycerol to form PC. Legionella pcs genes encode highly hydrophobic proteins with phosphatidylcholine synthase activity, which contain up to eight transmembrane helices with N- and C-termini located inside the bacterial cell. The comparative analysis of nucleotide sequences of pcs showed that these genes share high sequence identity among members of the Legionellaceae family. Legionella pmtA genes involved in the PMT pathway encoded small cytosolic proteins with putative phosphatidylethanolamine N-methyltransferase activity. The pmtA genes identified in Legionella species had lower sequence identity to each other than the pcs genes. The phylogenetic tree constructed based on the pcs and pmtA gene sequences showed phylogenetic relatedness between Legionella spp. and other bacteria. The utilization of extracellular choline by the four Legionella species leads to changes not only in the lipid components but also in proteins, and the interactions between these components lead to changes in cell surface properties, which result in a decline in induction of proinflammatory cytokines (TNF-α and IL-6).


Sujet(s)
Aminoacyltransferases/génétique , Protéines bactériennes/génétique , Choline/métabolisme , Cytokines/métabolisme , Médiateurs de l'inflammation/métabolisme , Legionella/génétique , Légionellose/métabolisme , Légionellose/microbiologie , Methyltransferases/génétique , Gènes bactériens , Variation génétique , Humains , Legionella/composition chimique , Legionella/classification , Métabolisme lipidique , Lipides/composition chimique , Spectroscopie par résonance magnétique , Phospholipides/composition chimique , Phospholipides/métabolisme , Phylogenèse , Spectroscopie infrarouge à transformée de Fourier
10.
Antonie Van Leeuwenhoek ; 110(12): 1729-1744, 2017 Dec.
Article de Anglais | MEDLINE | ID: mdl-28791535

RÉSUMÉ

Trifolium rubens L., commonly known as the red feather clover, is capable of symbiotic interactions with rhizobia. Up to now, no specific symbionts of T. rubens and their symbiotic compatibility with Trifolium spp. have been described. We characterized the genomic diversity of T. rubens symbionts by analyses of plasmid profiles and BOX-PCR. The phylogeny of T. rubens isolates was inferred based on the nucleotide sequences of 16S rRNA and two core genes (atpD, recA). The nodC phylogeny allowed classification of rhizobia nodulating T. rubens as Rhizobium leguminosarum symbiovar trifolii (Rlt). The symbiotic efficiency of the Rlt isolates was determined on four clover species: T. rubens, T. pratense, T. repens and T. resupinatum. We determined that Rlt strains formed mostly inefficient symbiosis with their native host plant T. rubens and weakly effective (sub-optimal) symbiosis with T. repens and T. pratense. The same Rlt strains were fully compatible in the symbiosis with T. resupinatum. T. rubens did not exhibit strict selectivity in regard to the symbionts and rhizobia closely related to Rhizobium grahamii, Rhizobium galegae and Agrobacterium radiobacter, which did not nodulate Trifolium spp., were found amongst T. rubens nodule isolates.


Sujet(s)
Rhizobium leguminosarum/classification , Rhizobium leguminosarum/physiologie , Nodules racinaires de plante/microbiologie , Symbiose , Trifolium/microbiologie , Gènes bactériens , Variation génétique , Génome bactérien , Typage par séquençage multilocus , Phylogenèse , Plasmides/génétique , Rhizobium leguminosarum/isolement et purification
11.
Antonie Van Leeuwenhoek ; 110(8): 1087-1103, 2017 Aug.
Article de Anglais | MEDLINE | ID: mdl-28500544

RÉSUMÉ

This is the first report describing isolates from root nodules of Ononis arvensis (field restharrow). The aim of this investigation was to describe the diversity, phylogeny, and plant growth promoting features of microsymbionts of O. arvensis, i.e., a legume plant growing in different places of the southern part of Poland. Twenty-nine bacterial isolates were characterized in terms of their phenotypic properties, genome fingerprinting, and comparative analysis of their 16S rRNA, nodC and acdS gene sequences. Based on the nodC and 16S rRNA gene phylogenies, the O. arvensis symbionts were grouped close to bacteria of the genera Rhizobium and Mesorhizobium, which formed monophyletic clusters. The acdS gene sequences of all the isolates tested exhibited the highest similarities to the corresponding gene sequences of genus Mesorhizobium strains. The presence of the acdS genes in the genomes of rhizobia specific for O. arvensis implies that these bacteria may promote the growth and development of their host plant in stress conditions. The isolated bacteria showed a high genomic diversity and, in the BOX-PCR reaction, all of them (except three) exhibited DNA fingerprints specific only for them. Our studies showed that restharrow isolates formed effective symbiotic interactions with their native host (O. arvensis) and Ononis spinosa but not with Trifolium repens and Medicago sativa belonging to the same tribe Trifolieae as Ononis species and not with Lotus corniculatus, representing the tribe Loteae.


Sujet(s)
Ononis/microbiologie , Rhizobium/croissance et développement , Nodules racinaires de plante/microbiologie , ADN bactérien , Fabaceae , Phylogenèse , Pologne , ARN ribosomique 16S , Rhizobium/physiologie , Analyse de séquence d'ADN , Symbiose
12.
Arch Microbiol ; 198(8): 793-801, 2016 Oct.
Article de Anglais | MEDLINE | ID: mdl-27209414

RÉSUMÉ

The plant growth-promoting rhizobacteria have developed many different (indirect and direct) mechanisms that have a positive effect on plant growth and development. Strains isolated from Astragalus cicer and Astragalus glycyphyllos root nodules were investigated for their plant growth-promoting properties such as production of indole-3-acetic acid (IAA) and siderophores, phosphate solubilization, ACC deaminase activity, and tolerance to heavy metals. IAA production and P-solubilization were frequent features in the analysed strains, while siderophores were not produced by any of them. In this work, we investigated the presence of the acdS genes and ACC deaminase activities in Astragalaus cicer and A. glycyphyllos microsymbionts, classified within the genus Mesorhizobium. The results demonstrated that the acdS gene is widespread in the genome of Astragalus sp. microsymbionts; however, none of the tested strains showed ACC deaminase activity. The acdS gene sequence similarity of the analysed strains to each other was in the range from 84 to 99 %. On the phylogram of acdS gene sequences of milkvetch, the symbionts clustered tightly with the genus Mesorhizobium bacteria.


Sujet(s)
Astragalus/microbiologie , Carbon-carbon lyases/métabolisme , Mesorhizobium/isolement et purification , Mesorhizobium/métabolisme , Carbon-carbon lyases/génétique , Éthylènes/métabolisme , Acides indolacétiques/métabolisme , Mesorhizobium/génétique , Métaux lourds/métabolisme , Développement des plantes , Racines de plante/microbiologie , Rhizobium/génétique , Rhizobium/isolement et purification , Sidérophores/métabolisme , Symbiose
13.
J Basic Microbiol ; 56(4): 379-91, 2016 Apr.
Article de Anglais | MEDLINE | ID: mdl-26879468

RÉSUMÉ

In this study, the tolerance of Mesorhizobium sp. ACMP18, Mesorhizobium sp. USDA3350, and Mesorhizobium temperatum LMG23931 strains, to cold and freezing were investigated. The ability to withstand freezing at -20 °C and -70 °C for 24 months was different among the studied strains and depended on the cryoprotectant used. The survivability of mesorhizobial strains at -20 °C and -70 °C was significantly improved by some cryoprotectans (glycerol and sucrose/peptone). It is worth noting that the greatest resistance to freezing was detected when stress treatments were performed in glycerol as a cryoprotectant. Using PCR analysis, cspA genes were identified in the studied strains. Their nucleotide sequences were most similar to the sequences of the corresponding genes of the Mesorhizobium species. The expression of the cspA gene in the studied bacteria was analyzed using the RT-PCR technique. The fatty acid composition of the mesorhizobia was determined at 5, 10, 15, and 28 °C. It was noticed that growth temperature significantly affected the fatty acid composition and the amounts of unsaturated fatty acids, especially that of cis-vaccenic acid (18:1É·(11)), increased markedly in bacterial cells cultivated at 5, 10, and 15 °C.


Sujet(s)
Adaptation biologique/physiologie , Cryoprotecteurs/pharmacologie , Mesorhizobium/effets des médicaments et des substances chimiques , Mesorhizobium/physiologie , Protéines bactériennes/physiologie , Basse température , Mesorhizobium/métabolisme , Acides oléiques/métabolisme , Phylogenèse , Stress physiologique/physiologie
14.
Int J Syst Evol Microbiol ; 66(4): 1906-1912, 2016 Apr.
Article de Anglais | MEDLINE | ID: mdl-26704062

RÉSUMÉ

In this study, the phylogenetic relationship and taxonomic status of six strains, representing different phenons and genomic groups of Astragalus glycyphyllos symbionts, originating from Poland, were established by comparative analysis of five concatenated housekeeping gene sequences (atpD, dnaK, glnA, recA and rpoB), DNA-DNA hybridization and total DNA G+C content. Maximum-likelihood phylogenetic analysis of combined atpD, dnaK, glnA, recA and rpoB sequence data placed the studied bacteria into the clade comprising the genus Mesorhizobium. In the core gene phylograms, four A. glycyphyllos nodule isolates (AG1, AG7, AG15 and AG27) formed a cluster common with Mesorhizobium ciceri, whereas the two other A. glycyphyllos symbionts (AG17 and AG22) were grouped together with Mesorhizobium amorphae and M. septentrionale. The species position of the studied bacteria was clarified by DNA-DNA hybridization. The DNA-DNA relatedness between isolates AG1, AG7, AG15 and AG27 and reference strain M. ciceri USDA 3383T was 76.4-84.2%, and all these A. glycyphyllos nodulators were defined as members of the genomospecies M. ciceri. DNA-DNA relatedness for isolates AG17 and AG22 and the reference strain M. amorphae ICMP 15022T was 77.5 and 80.1%, respectively. We propose that the nodule isolates AG17 and AG22 belong to the genomic species M. amorphae. Additionally, it was found that the total DNA G+C content of the six test A. glycyphyllos symbionts was 59.4-62.1 mol%, within the range for species of the genus Mesorhizobium.


Sujet(s)
Astragalus/microbiologie , Mesorhizobium/classification , Phylogenèse , Nodules racinaires de plante/microbiologie , Techniques de typage bactérien , Composition en bases nucléiques , ADN bactérien/génétique , Gènes bactériens , Mesorhizobium/génétique , Mesorhizobium/isolement et purification , Données de séquences moléculaires , Typage par séquençage multilocus , Hybridation d'acides nucléiques , Pologne , ARN ribosomique 16S/génétique , Analyse de séquence d'ADN
15.
PLoS One ; 10(10): e0141504, 2015.
Article de Anglais | MEDLINE | ID: mdl-26496493

RÉSUMÉ

The phylogeny of symbiotic genes of Astragalus glycyphyllos L. (liquorice milkvetch) nodule isolates was studied by comparative sequence analysis of nodA, nodC, nodH and nifH loci. In all these genes phylograms, liquorice milkvetch rhizobia (closely related to bacteria of three species, i.e. Mesorhizobium amorphae, Mesorhizobium septentrionale and Mesorhizobium ciceri) formed one clearly separate cluster suggesting the horizontal transfer of symbiotic genes from a single ancestor to the bacteria being studied. The high sequence similarity of the symbiotic genes of A. glycyphyllos rhizobia (99-100% in the case of nodAC and nifH genes, and 98-99% in the case of nodH one) points to the relatively recent (in evolutionary scale) lateral transfer of these genes. In the nodACH and nifH phylograms, A. glycyphyllos nodule isolates were grouped together with the genus Mesorhizobium species in one monophyletic clade, close to M. ciceri, Mesorhizobium opportunistum and Mesorhizobium australicum symbiovar biserrulae bacteria, which correlates with the close relationship of these rhizobia host plants. Plant tests revealed the narrow host range of A. glycyphyllos rhizobia. They formed effective symbiotic interactions with their native host (A. glycyphyllos) and Amorpha fruticosa but not with 11 other fabacean species. The nodules induced on A. glycyphyllos roots were indeterminate with apical, persistent meristem, an age gradient of nodule tissues and cortical vascular bundles. To reflect the symbiosis-adaptive phenotype of rhizobia, specific for A. glycyphyllos, we propose for these bacteria the new symbiovar "glycyphyllae", based on nodA and nodC genes sequences.


Sujet(s)
Astragalus/microbiologie , Mesorhizobium/génétique , Nodules racinaires de plante/microbiologie , Acyltransferases/génétique , Astragalus/ultrastructure , Protéines bactériennes/génétique , Gènes bactériens , Locus génétiques , Mesorhizobium/métabolisme , N-acetylglucosaminyltransferase/génétique , Fixation de l'azote , Phylogenèse , Rhizobium/génétique , Rhizobium/métabolisme , Nodules racinaires de plante/ultrastructure , Analyse de séquence d'ADN , Symbiose
16.
J Appl Genet ; 56(4): 551-554, 2015 Nov.
Article de Anglais | MEDLINE | ID: mdl-25929993

RÉSUMÉ

We assessed the genomic diversity and genomic relationship of 28 Astragalus glycyphyllos symbionts by three methodologies based on PCR reaction, i.e., RAPD, ERIC-PCR, and AFLP. The AFLP method with one PstI restriction enzyme and selective PstI-GC primer pair had a comparable discriminatory power as ERIC-PCR one and these fingerprinting techniques distinguished among the studied 28 A. glycyphyllos symbionts 18 and 17 genomotypes, respectively. RAPD method was less discriminatory in the genomotyping of rhizobia analyzed and it efficiently resolved nine genomotypes. The cluster analysis of RAPD, ERIC-PCR, and AFLP profiles resulted in a generally similar grouping of the test strains on generated dendrograms supporting a great potential of these DNA fingerprinting techniques for study of genomic polymorphism and evolutionary relationship of A. glycyphyllos nodulators. The RAPD, ERIC-PCR, and AFLP pattern similarity coefficients between A. glycyphyllos symbionts studied was in the ranges 8-100, 18-100, and 23-100%, respectively.


Sujet(s)
Astragalus/microbiologie , Bactéries/classification , Profilage d'ADN/méthodes , Phylogenèse , Analyse de polymorphisme de longueur de fragments amplifiés , ADN bactérien/génétique , Réaction de polymérisation en chaîne , Technique RAPD , Nodules racinaires de plante/microbiologie , Symbiose
17.
Pathog Dis ; 73(2): 1-8, 2015 Mar.
Article de Anglais | MEDLINE | ID: mdl-25176171

RÉSUMÉ

Binding of human apolipoprotein E (apoE) to Legionella pneumophila lipopolysaccharide was analysed at the molecular level by Fourier-transform infrared spectroscopy, thereby providing biophysical evidence for apoE-L. pneumophila lipopolysaccharide interaction. Atomic force microscopy imaging of apoE-exposed L. pneumophila cells revealed alterations in the bacterial cell surface topography and nanomechanical properties in comparison with control bacteria. The changes induced by apoE binding to lipopolysaccharide on the surface of L. pneumophila cells may participate in: (1) impeding the penetration of host cells by the bacteria; (2) suppression of pathogen intracellular growth and eventually; and (3) inhibition of the development of infection.


Sujet(s)
Apolipoprotéines E/métabolisme , Legionella pneumophila/effets des médicaments et des substances chimiques , Propriétés de surface/effets des médicaments et des substances chimiques , Humains , Lipopolysaccharides/métabolisme , Microscopie à force atomique , Liaison aux protéines , Spectroscopie infrarouge à transformée de Fourier
18.
Antonie Van Leeuwenhoek ; 105(6): 1033-48, 2014 Jun.
Article de Anglais | MEDLINE | ID: mdl-24710996

RÉSUMÉ

In this study, the nitrogen fixing Astragalus glycyphyllos symbionts were characterized by phenotypic properties, restriction fragment length polymorphism (RFLP), and sequences of 16S rDNA. The generation time of A. glycyphyllos rhizobia in yeast extract mannitol medium was in the range 4-6 h. The studied isolates exhibited a low resistance to antibiotics, a moderate tolerance to NaCl, assimilated di- and trisaccharides, and produced acid in medium containing mannitol as a sole carbon source. In the cluster analysis, based on 86 phenotypic properties of A. glycyphyllos symbionts and the reference rhizobia, examined isolates and the genus Mesorhizobium strains were placed on a single branch, clearly distinct from other lineages of rhizobial genera. By the comparative analysis of 16S rRNA gene sequences and 16S rDNA-RFLP, A. glycyphyllos nodulators were also identified as the members of the genus Mesorhizobium. On the 16S rDNA sequence phylogram, the representatives of A. glycyphyllos nodule isolates formed a robust, monophyletic cluster together with the Mesorhizobium species at 16S rDNA sequence similarity of these bacteria between 95 and 99 %. Similarly, the cluster analysis of the combined RFLP-16S rDNA patterns, obtained with seven restriction endonucleases, showed that A. glycyphyllos rhizobia are closely related to the genus Mesorhizobium bacteria. The taxonomic approaches used in this paper allowed us to classify the studied bacteria into the genus Mesorhizobium.


Sujet(s)
Fabaceae/microbiologie , Mesorhizobium/isolement et purification , Mesorhizobium/physiologie , Phylogenèse , Symbiose , Techniques de typage bactérien , Acides carboxyliques/métabolisme , Analyse de regroupements , ADN bactérien/composition chimique , ADN bactérien/génétique , ADN ribosomique/composition chimique , ADN ribosomique/génétique , Gènes d'ARN ribosomique , Mannitol/métabolisme , Mesorhizobium/classification , Mesorhizobium/génétique , Données de séquences moléculaires , Polymorphisme de restriction , ARN ribosomique 16S/génétique , Analyse de séquence d'ADN , Chlorure de sodium/métabolisme
19.
Syst Appl Microbiol ; 36(4): 252-8, 2013 Jun.
Article de Anglais | MEDLINE | ID: mdl-23507586

RÉSUMÉ

The taxonomic status of the Rhizobium sp. K3.22 clover nodule isolate was studied by multilocus sequence analysis (MLSA) of 16S rRNA and six housekeeping chromosomal genes, as well as by a subsequent phylogenic analysis. The results revealed full congruence with the Rhizobium pisi DSM 30132(T) core genes, thus supporting the same taxonomic position for both strains. However, the K3.22 plasmid symbiosis nod genes demonstrated high sequence similarity to Rhizobium leguminosarum sv. trifolii, whereas the R. pisi DSM 30132(T)nod genes were most similar to R. leguminosarum sv. viciae. The strains differed in the host range nodulation specificity, since strain K3.22 effectively nodulated red and white clover but not vetch, in contrast to R. pisi DSM 30132(T), which effectively nodulated vetch but was not able to nodulate clover. Both strains had the ability to form nodules on pea and bean but they differed in bean cultivar specificity. The R. pisi K3.22 and DSM 30132(T) strains might provide evidence for the transfer of R. leguminosarum sv. trifolii and sv. viciae symbiotic plasmids occurring in natural soil populations.


Sujet(s)
Rhizobium leguminosarum/classification , Rhizobium leguminosarum/génétique , Nodules racinaires de plante/microbiologie , Analyse de regroupements , ADN bactérien/composition chimique , ADN bactérien/génétique , ADN ribosomique/composition chimique , ADN ribosomique/génétique , Gènes bactériens , Spécificité d'hôte , Medicago/microbiologie , Données de séquences moléculaires , Typage moléculaire , Phylogenèse , Nodulation racinaire , Plasmides , ARN ribosomique 16S/génétique , Rhizobium leguminosarum/isolement et purification , Rhizobium leguminosarum/physiologie , Analyse de séquence d'ADN
20.
Curr Microbiol ; 66(5): 428-36, 2013 May.
Article de Anglais | MEDLINE | ID: mdl-23288303

RÉSUMÉ

In this study, we have investigated intrinsic salt tolerance of Astragalus cicer microsymbionts (USDA3350, ACMP18) and the role of exogenous glycine betaine in osmoprotection in these bacteria. Salt stress was imposed by NaCl concentrations ranging from 0.5 to 2 %. A. cicer mesorhizobia were capable of tolerating up to 2 % sodium chloride with a population count that was inversely proportional to the salt content. When the extracellular concentration of NaCl was raised to 2 %, the generation time of the UDSA3350 strain in the mid-exponential phase of growth was 3.9-times greater than that in the no-salt control medium, whereas the ACMP18 strain survived under the same conditions but did not multiply. Application of 1 mM glycine betaine into the salt-stressed rhizobium cultures increased the number of culturable bacteria, pointing out that this molecule was involved in restoration of osmotic balance. The decline in A. cicer symbiont viability in the medium with sodium chloride and the osmoprotective role of glycine betaine for these bacteria was confirmed in the experiment using the live/dead Bac Light Bacterial Vibility Kit. Data presented in this study showed the presence of proU-like genes in the genomes of A. cicer rhizobia with high sequence similarity to the genes of the ProU-like system in Sinorhizobium meliloti and the proU operon of Escherichia coli.


Sujet(s)
Bétaïne/métabolisme , Cicer/métabolisme , Pression osmotique , Tolérance au sel , Carbone/métabolisme , Cicer/génétique , Cicer/croissance et développement , Métabolisme énergétique , Azote/métabolisme , Opéron , Stress physiologique
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