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1.
ACS Omega ; 9(31): 34008-34020, 2024 Aug 06.
Article de Anglais | MEDLINE | ID: mdl-39130550

RÉSUMÉ

Postoperative peritoneal adhesions occur after more than 60% of abdominal surgeries and can cause severe long-term side effects, such as chronic pain, infertility, and intestinal obstructions. However, currently available products for adhesion prophylaxis often lack efficiency or are too heavy to handle. Hydrogels are promising materials to be used for adhesion prevention as they show good mechanical stability and biocompatibility. Herein, we present a novel two-component sprayable, biodegradable, fast-curing, and shape-adaptive polyurethane urea (PUU) hydrogel system and the establishment of a full characterization approach to investigate its suitability for adhesion prophylaxis according to predefined chemical, mechanical, and biological criteria. We demonstrate that this PUU hydrogel system exhibits a fast-curing behavior, is resilient toward mechanical forces, is biocompatible, and reveals a degradation behavior within a desired time frame to reliably avoid the formation of adhesions. In addition, the PUU hydrogel system functions as an effective barrier for invading cells in vitro. Overall, we propose a guideline for the development and in vitro characterization of synthetic hydrogels for application in minimally invasive adhesion prophylaxis.

2.
Sci Rep ; 14(1): 13608, 2024 06 13.
Article de Anglais | MEDLINE | ID: mdl-38871849

RÉSUMÉ

Transplantation of stem cell-derived ß-cells is a promising therapeutic advancement in the treatment of type 1 diabetes mellitus. A current limitation of this approach is the long differentiation timeline that generates a heterogeneous population of pancreatic endocrine cells. To address this limitation, an inducible lentiviral overexpression system of mature ß-cell markers was introduced into human induced-pluripotent stem cells (hiPSCs). Following the selection of the successfully transduced hiPSCs, the cells were treated with doxycycline in the pancreatic progenitor induction medium to support their transition toward the pancreatic lineage. Cells cultured with doxycycline presented the markers of interest, NGN3, PDX1, and MAFA, after five days of culture, and glucose-stimulated insulin secretion assays demonstrated that the cells were glucose-responsive in a monolayer culture. When cultured as a spheroid, the markers of interest and insulin secretion in a static glucose-stimulated insulin secretion assay were maintained; however, insulin secretion upon consecutive glucose challenges was limited. Comparison to human fetal and adult donor tissues identified that although the hiPSC-derived spheroids present similar markers to adult insulin-producing cells, they are functionally representative of fetal development. Together, these results suggest that with optimization of the temporal expression of these markers, forward programming of hiPSCs towards insulin-producing cells could be a possible alternative for islet transplantation.


Sujet(s)
Facteurs de transcription à motif basique hélice-boucle-hélice , Différenciation cellulaire , Protéines à homéodomaine , Cellules souches pluripotentes induites , Cellules à insuline , Grandes protéines des facteurs de transcription Maf , Protéines de tissu nerveux , Transactivateurs , Humains , Cellules à insuline/métabolisme , Cellules à insuline/cytologie , Protéines à homéodomaine/métabolisme , Protéines à homéodomaine/génétique , Transactivateurs/métabolisme , Transactivateurs/génétique , Cellules souches pluripotentes induites/métabolisme , Cellules souches pluripotentes induites/cytologie , Facteurs de transcription à motif basique hélice-boucle-hélice/métabolisme , Facteurs de transcription à motif basique hélice-boucle-hélice/génétique , Protéines de tissu nerveux/métabolisme , Protéines de tissu nerveux/génétique , Grandes protéines des facteurs de transcription Maf/métabolisme , Grandes protéines des facteurs de transcription Maf/génétique , Insuline/métabolisme , Glucose/métabolisme , Glucose/pharmacologie , Sécrétion d'insuline/effets des médicaments et des substances chimiques , Cellules cultivées , Doxycycline/pharmacologie
3.
Bioengineering (Basel) ; 9(5)2022 May 20.
Article de Anglais | MEDLINE | ID: mdl-35621498

RÉSUMÉ

Recent trends in 3D cell culturing has placed organotypic tissue models at another level. Now, not only is the microenvironment at the cynosure of this research, but rather, microscopic geometrical parameters are also decisive for mimicking a tissue model. Over the years, technologies such as micromachining, 3D printing, and hydrogels are making the foundation of this field. However, mimicking the topography of a particular tissue-relevant substrate can be achieved relatively simply with so-called template or morphology transfer techniques. Over the last 15 years, in one such research venture, we have been investigating a micro thermoforming technique as a facile tool for generating bioinspired topographies. We call them MatriGrid®s. In this research account, we summarize our learning outcome from this technique in terms of the influence of 3D micro morphologies on different cell cultures that we have tested in our laboratory. An integral part of this research is the evolution of unavoidable aspects such as possible label-free sensing and fluidic automatization. The development in the research field is also documented in this account.

4.
Sci Rep ; 11(1): 21163, 2021 10 27.
Article de Anglais | MEDLINE | ID: mdl-34707135

RÉSUMÉ

Hematopoietic stem cell (HSC) transplantation is successfully applied since the late 1950s. However, its efficacy can be impaired by insufficient numbers of donor HSCs. A promising strategy to overcome this hurdle is the use of an advanced ex vivo culture system that supports the proliferation and, at the same time, maintains the pluripotency of HSCs. Therefore, we have developed artificial 3D bone marrow-like scaffolds made of polydimethylsiloxane (PDMS) that model the natural HSC niche in vitro. These 3D PDMS scaffolds in combination with an optimized HSC culture medium allow the amplification of high numbers of undifferentiated HSCs. After 14 days in vitro cell culture, we performed transcriptome and proteome analysis. Ingenuity pathway analysis indicated that the 3D PDMS cell culture scaffolds altered PI3K/AKT/mTOR pathways and activated SREBP, HIF1α and FOXO signaling, leading to metabolic adaptations, as judged by ELISA, Western blot and metabolic flux analysis. These molecular signaling pathways can promote the expansion of HSCs and are involved in the maintenance of their pluripotency. Thus, we have shown that the 3D PDMS scaffolds activate key molecular signaling pathways to amplify the numbers of undifferentiated HSCs ex vivo effectively.


Sujet(s)
Matériaux biomimétiques/composition chimique , Polydiméthylsiloxanes/composition chimique , Cellules souches hématopoïétiques/métabolisme , Structures d'échafaudage tissulaires/composition chimique , Transcriptome , Adulte , Matériaux biomimétiques/effets indésirables , Prolifération cellulaire , Cellules cultivées , Polydiméthylsiloxanes/effets indésirables , Femelle , Facteurs de transcription Forkhead/métabolisme , Cellules souches hématopoïétiques/effets des médicaments et des substances chimiques , Cellules souches hématopoïétiques/physiologie , Humains , Sous-unité alpha du facteur-1 induit par l'hypoxie/métabolisme , Mâle , Phosphatidylinositol 3-kinases/métabolisme , Protéines proto-oncogènes c-akt/métabolisme , Transduction du signal , Protéines de liaison à l'élément de régulation des stérols/métabolisme , Sérine-thréonine kinases TOR/métabolisme , Structures d'échafaudage tissulaires/effets indésirables
5.
J Mol Biol ; 433(18): 167112, 2021 09 03.
Article de Anglais | MEDLINE | ID: mdl-34153288

RÉSUMÉ

Siphoviruses are main killers of bacteria. They use a long non-contractile tail to recognize the host cell and to deliver the genome from the viral capsid to the bacterial cytoplasm. Here, we define the molecular organization of the Bacillus subtilis bacteriophage SPP1 ~ 6.8 MDa tail and uncover its biogenesis mechanisms. A complex between gp21 and the tail distal protein (Dit) gp19.1 is assembled first to build the tail cap (gp19.1-gp21Nter) connected by a flexible hinge to the tail fiber (gp21Cter). The tip of the gp21Cter fiber is loosely associated to gp22. The cap provides a platform where tail tube proteins (TTPs) initiate polymerization around the tape measure protein gp18 (TMP), a reaction dependent on the non-structural tail assembly chaperones gp17.5 and gp17.5* (TACs). Gp17.5 is essential for stability of gp18 in the cell. Helical polymerization stops at a precise tube length followed by binding of proteins gp16.1 (TCP) and gp17 (THJP) to build the tail interface for attachment to the capsid portal system. This finding uncovers the function of the extensively conserved gp16.1-homologs in assembly of long tails. All SPP1 tail components, apart from gp22, share homology to conserved proteins whose coding genes' synteny is broadly maintained in siphoviruses. They conceivably represent the minimal essential protein set necessary to build functional long tails. Proteins homologous to SPP1 tail building blocks feature a variety of add-on modules that diversify extensively the tail core structure, expanding its capability to bind host cells and to deliver the viral genome to the bacterial cytoplasm.


Sujet(s)
Bacillus subtilis/virologie , Capside/métabolisme , Génome viral , Siphoviridae/physiologie , Protéines virales queue/métabolisme , Virion/physiologie , Assemblage viral , Chaperons moléculaires , Siphoviridae/composition chimique , Siphoviridae/génétique , Protéines virales queue/génétique
6.
ACS Infect Dis ; 7(6): 1596-1606, 2021 06 11.
Article de Anglais | MEDLINE | ID: mdl-33724771

RÉSUMÉ

The presence of antibodies against endemic coronaviruses has been linked to disease severity after SARS-CoV-2 infection. Assays capable of concomitantly detecting antibodies against endemic coronaviridae such as OC43, 229E, NL63, and SARS-CoV-2 may help to elucidate this question. We developed a serum screening platform using a bead-based Western blot system called DigiWest, capable of running hundreds of assays using microgram amounts of protein prepared directly from different viruses. Characterization of the immunoassay for detection of SARS-CoV-2 specific antibodies revealed a sensitivity of 90.3% and a diagnostic specificity of 98.1%. Concordance analysis with the SARS-CoV-2 immunoassays available by Roche, Siemens, and Euroimmun indicates comparable assay performances (Cohen's κ ranging from 0.8874 to 0.9508). Analogous assays for OC43, 229E, and NL63 were established and combined into one multiplex with the SARS-CoV-2 assay. Seroreactivity for different coronaviruses was detected with high incidence, and the multiplex assay was adapted for serum screening.


Sujet(s)
COVID-19 , Coronaviridae , Dépistage de la COVID-19 , Humains , Extraits de plantes , SARS-CoV-2
7.
Nat Commun ; 12(1): 1152, 2021 02 19.
Article de Anglais | MEDLINE | ID: mdl-33608538

RÉSUMÉ

The humoral immune response to SARS-CoV-2 is a benchmark for immunity and detailed analysis is required to understand the manifestation and progression of COVID-19, monitor seroconversion within the general population, and support vaccine development. The majority of currently available commercial serological assays only quantify the SARS-CoV-2 antibody response against individual antigens, limiting our understanding of the immune response. To overcome this, we have developed a multiplex immunoassay (MultiCoV-Ab) including spike and nucleocapsid proteins of SARS-CoV-2 and the endemic human coronaviruses. Compared to three broadly used commercial in vitro diagnostic tests, our MultiCoV-Ab achieves a higher sensitivity and specificity when analyzing a well-characterized sample set of SARS-CoV-2 infected and uninfected individuals. We find a high response against endemic coronaviruses in our sample set, but no consistent cross-reactive IgG response patterns against SARS-CoV-2. Here we show a robust, high-content-enabled, antigen-saving multiplex assay suited to both monitoring vaccination studies and facilitating epidemiologic screenings for humoral immunity towards pandemic and endemic coronaviruses.


Sujet(s)
Anticorps antiviraux/immunologie , Dépistage sérologique de la COVID-19/méthodes , COVID-19/immunologie , Réactions croisées , Immunité humorale , COVID-19/diagnostic , Protéines de la nucléocapside des coronavirus/immunologie , Humains , Dosage immunologique , Immunoglobuline G/immunologie , Phosphoprotéines/immunologie , SARS-CoV-2/immunologie , Sensibilité et spécificité , Glycoprotéine de spicule des coronavirus/immunologie
8.
Materials (Basel) ; 13(18)2020 Sep 04.
Article de Anglais | MEDLINE | ID: mdl-32899859

RÉSUMÉ

In this work, which is part of a larger research program, a framework called "virtual data fusion" was developed to provide an automated and consistent crack detection method that allows for the cross-comparison of results from large quantities of X-ray computed tomography (CT) data. A partial implementation of this method in a custom program was developed for use in research focused on crack quantification in alkali-silica reaction (ASR)-sensitive concrete aggregates. During the CT image processing, a series of image analyses tailored for detecting specific, individual crack-like characteristics were completed. The results of these analyses were then "fused" in order to identify crack-like objects within the images with much higher accuracy than that yielded by any individual image analysis procedure. The results of this strategy demonstrated the success of the program in effectively identifying crack-like structures and quantifying characteristics, such as surface area and volume. The results demonstrated that the source of aggregate has a very significant impact on the amount of internal cracking, even when the mineralogical characteristics remain very similar. River gravels, for instance, were found to contain significantly higher levels of internal cracking than quarried stone aggregates of the same mineralogical type.

9.
Cell Death Dis ; 8(8): e3013, 2017 08 24.
Article de Anglais | MEDLINE | ID: mdl-28837150

RÉSUMÉ

Current preclinical models in tumor biology are limited in their ability to recapitulate relevant (patho-) physiological processes, including autophagy. Three-dimensional (3D) growth cultures have frequently been proposed to overcome the lack of correlation between two-dimensional (2D) monolayer cell cultures and human tumors in preclinical drug testing. Besides 3D growth, it is also advantageous to simulate shear stress, compound flux and removal of metabolites, e.g., via bioreactor systems, through which culture medium is constantly pumped at a flow rate reflecting physiological conditions. Here we show that both static 3D growth and 3D growth within a bioreactor system modulate key hallmarks of cancer cells, including proliferation and cell death as well as macroautophagy, a recycling pathway often activated by highly proliferative tumors to cope with metabolic stress. The autophagy-related gene expression profiles of 2D-grown cells are substantially different from those of 3D-grown cells and tumor tissue. Autophagy-controlling transcription factors, such as TFEB and FOXO3, are upregulated in tumors, and 3D-grown cells have increased expression compared with cells grown in 2D conditions. Three-dimensional cultures depleted of the autophagy mediators BECN1, ATG5 or ATG7 or the transcription factor FOXO3, are more sensitive to cytotoxic treatment. Accordingly, combining cytotoxic treatment with compounds affecting late autophagic flux, such as chloroquine, renders the 3D-grown cells more susceptible to therapy. Altogether, 3D cultures are a valuable tool to study drug response of tumor cells, as these models more closely mimic tumor (patho-)physiology, including the upregulation of tumor relevant pathways, such as autophagy.


Sujet(s)
Autophagie/physiologie , Résistance aux médicaments antinéoplasiques/physiologie , Tumeurs/anatomopathologie , Lignée cellulaire tumorale , Prolifération cellulaire , Humains , Tumeurs/traitement médicamenteux
10.
Mater Sci Eng C Mater Biol Appl ; 49: 509-516, 2015 Apr.
Article de Anglais | MEDLINE | ID: mdl-25686978

RÉSUMÉ

Within the scientific community, there is an increasing demand to apply advanced cell cultivation substrates with increased physiological functionalities for studying spatially defined cellular interactions. Porous polymeric scaffolds are utilized for mimicking an organ-like structure or engineering complex tissues and have become a key element for three-dimensional (3D) cell cultivation in the meantime. As a consequence, efficient 3D scaffold fabrication methods play an important role in modern biotechnology. Here, we present a novel thermoforming procedure for manufacturing porous 3D scaffolds from permeable materials. We address the issue of precise thermoforming of porous polymer foils by using multilayer polymer thermoforming technology. This technology offers a new method for structuring porous polymer foils that are otherwise available for non-porous polymers only. We successfully manufactured 3D scaffolds from solvent casted and phase separated polylactic acid (PLA) foils and investigated their biocompatibility and basic cellular performance. The HepG2 cell culture in PLA scaffold has shown enhanced albumin secretion rate in comparison to a previously reported polycarbonate based scaffold with similar geometry.


Sujet(s)
Porosité , Structures d'échafaudage tissulaires , Animaux , Lignée cellulaire , Test de matériaux , Souris , Microscopie électronique à balayage
11.
Mol Microbiol ; 91(6): 1164-78, 2014 Mar.
Article de Anglais | MEDLINE | ID: mdl-24443902

RÉSUMÉ

Bacteriophage SPP1 is a nanomachine built to infect the bacterium Bacillus subtilis. The phage particle is composed of an icosahedric capsid, which contains the viral DNA, and a long non-contractile tail. Capsids and tails are produced in infected cells by two distinct morphogenetic pathways. Characterization of the suppressor-sensitive mutant SPP1sus82 showed that it produces DNA-filled capsids and tails but is unable to assemble complete virions. Its purified tails have a normal length but lack a narrow ring that tapers the tail end found at the tail-to-head interface. The mutant is defective in production of gp17. The gp17 ring is exposed in free tails competent for viral assembly but becomes shielded in the final virion structure. Recombinant gp17 is active in an in vitro assay to stick together capsids and tails present in extracts of SPP1sus82-infected cells, leading to formation of infectious particles. Gp17 thus plays a fundamental role in the tail-to-head joining reaction, the ultimate step of virus particle assembly. This is the conserved function of gp17 and its structurally related proteins like lambda gpU. This family of proteins can also provide fidelity to termination of the tail tube elongation reaction in a subset of phages including coliphage lambda.


Sujet(s)
Phages de Bacillus/physiologie , Bacillus subtilis/virologie , Protéines virales structurales/métabolisme , Assemblage viral , Liaison aux protéines
12.
PLoS One ; 8(12): e82635, 2013.
Article de Anglais | MEDLINE | ID: mdl-24349324

RÉSUMÉ

Although electrosurgical instruments are widely used in surgery to cut tissue layers or to achieve hemostasis by coagulation (electrocautery), only little information is available concerning the inflammatory or immune response towards the debris generated. Given the elevated local temperatures required for successful electrocautery, the remaining debris is likely to contain a plethora of compounds entirely novel to the intracorporal setting. A very common in vitro method to study cell migration after mechanical damage is the scratch assay, however, there is no established model for thermomechanical damage to characterise cellular reactions. In this study, we established a new in vitro model to investigate exposure to high temperature in a carefully controlled cell culture system. Heatable thermostat-controlled aluminium stamps were developed to induce local damage in primary human umbilical vein endothelial cells (HUVEC). The thermomechanical damage invoked is reproducibly locally confined, therefore allowing studies, under the same experimental conditions, of cells affected to various degrees as well as of unaffected cells. We show that the unaffected cells surrounding the thermomechanical damage zone are able to migrate into the damaged area, resulting in a complete closure of the 'wound' within 48 h. Initial studies have shown that there are significant morphological and biological differences in endothelial cells after thermomechanical damage compared to the mechanical damage inflicted by using the unheated stamp as a control. Accordingly, after thermomechanical damage, cell death as well as cell protection programs were activated. Mononuclear cells adhered in the area adjacent to thermomechanical damage, but not to the zone of mechanical damage. Therefore, our model can help to understand the differences in wound healing during the early phase of regeneration after thermomechanical vs. mechanical damage. Furthermore, this model lends itself to study the response of other cells, thus broadening the range of thermal injuries that can be analysed.


Sujet(s)
Techniques de culture cellulaire , Cellules endothéliales , Contrainte mécanique , Température , Adhérence cellulaire , Mouvement cellulaire , Survie cellulaire , Cellules endothéliales de la veine ombilicale humaine , Humains , Espèces réactives de l'oxygène/métabolisme , Stress physiologique , Facteur de nécrose tumorale alpha/métabolisme
13.
Biotechnol Bioeng ; 110(9): 2504-12, 2013 Sep.
Article de Anglais | MEDLINE | ID: mdl-23568058

RÉSUMÉ

By the use of a MatriGrid® we have established a three-dimensional high density cell culture. The MatriGrid® is a culture medium permeable, polymeric scaffold with 187 microcavities. In these cavities (300 µm diameter and 207 µm deep) the cells can growth three-dimensionally. For these experiments we measured the oxygen consumption of HepG2 cell cultures in order to optimize cultivation conditions. We measured and compared the oxygen consumption, growth rate and vitality under three different cultivation conditions: monolayer, three-dimensional static and three-dimensional actively perfused. The results show that the cells in a three-dimensional cell culture consume less oxygen as in a monolayer cell culture and that the actively perfused three-dimensional cell culture in the MatriGrid® has a similar growth rate and vitality as the monolayer culture.


Sujet(s)
Techniques de culture cellulaire , Milieux de culture/composition chimique , Consommation d'oxygène/physiologie , Bioréacteurs , Techniques de culture cellulaire/instrumentation , Techniques de culture cellulaire/méthodes , Milieux de culture/pharmacologie , Conception d'appareillage , Cellules HepG2 , Humains , Modèles biologiques , Oxygène/analyse , Oxygène/métabolisme
14.
Methods Mol Biol ; 706: 97-106, 2011.
Article de Anglais | MEDLINE | ID: mdl-21104057

RÉSUMÉ

Genome-wide screening procedures have developed into a useful tool for assigning new functions to known proteins or for identifying new interplayers in cell metabolism, especially under pathological conditions. Since primary cells reflect the physiological situation more closely than transformed cell lines, their employment in such screenings is highly desirable. A difficulty to overcome--besides the shortage in cell supply--is that primary cells are less amenable to classical methods of genetic manipulation such as lipofection or electroporation. By using adenovirus as the vehicle for genetic manipulation, efficient transfer of genetic information can be achieved without drastic effects on cell viability, and by using a microarray format even small amounts of cells suffice to perform a screen.


Sujet(s)
Adenoviridae/génétique , Petit ARN interférent/métabolisme , Analyse sur puce à tissus/méthodes , Adenoviridae/métabolisme , Lignée de cellules transformées , Électroporation , Techniques de knock-out de gènes , Protéines à fluorescence verte/métabolisme , Cellules HeLa , Humains , Microscopie de fluorescence , Petit ARN interférent/génétique
15.
Mol Microbiol ; 70(3): 557-69, 2008 Nov.
Article de Anglais | MEDLINE | ID: mdl-18786146

RÉSUMÉ

The majority of bacteriophages have a long non-contractile tail (Siphoviridae) that serves as a conduit for viral DNA traffic from the phage capsid to the host cell at the beginning of infection. The 160-nm-long tail tube of Bacillus subtilis bacteriophage SPP1 is shown to be composed of two major tail proteins (MTPs), gp17.1 and gp17.1*, at a ratio of about 3:1. They share a common amino-terminus, but the latter species has approximately 10 kDa more than gp17.1. A CCC.UAA sequence with overlapping proline codons at the 3' end of gene 17.1 drives a programmed translational frameshift to another open reading frame. The recoding event generates gp17.1*. Phages carrying exclusively gp17.1 or gp17.1* are viable, but tails are structurally distinct. gp17.1 and the carboxyl-terminus of gp17.1* have a distinct evolutionary history correlating with different functions: the polypeptide sequence identical in the two proteins is responsible for assembly of the tail tube while the additional module of gp17.1* shields the structure exterior exposed to the environment. The carboxyl-terminal extension is an elaboration present in some tailed bacteriophages. Different extensions were found to combine in a mosaic fashion with the MTP essential module in a subset of Siphoviridae genomes.


Sujet(s)
Phages de Bacillus/génétique , Décalage ribosomique , Protéines virales queue/génétique , Phages de Bacillus/physiologie , Bacillus subtilis/virologie , ADN viral/génétique , Escherichia coli/génétique , Évolution moléculaire , Gènes viraux , Génome viral , Mutagenèse dirigée , Mutation , Conformation d'acide nucléique , Cadres ouverts de lecture , Plasmides , Similitude de séquences d'acides aminés , Réplication virale/génétique
16.
BMC Genomics ; 9: 441, 2008 Sep 24.
Article de Anglais | MEDLINE | ID: mdl-18816379

RÉSUMÉ

BACKGROUND: The identification of novel drug targets by assessing gene functions is most conveniently achieved by high-throughput loss-of-function RNA interference screening. There is a growing need to employ primary cells in such screenings, since they reflect the physiological situation more closely than transformed cell lines do. Highly miniaturized and parallelized approaches as exemplified by reverse transfection or transduction arrays meet these requirements, hence we verified the applicability of an adenoviral microarray for the elucidation of gene functions in primary cells. RESULTS: Here, we present microarrays of infectious adenoviruses encoding short hairpin RNA (shRNA) as a new tool for gene function analysis. As an example to demonstrate its application, we chose shRNAs directed against seven selected human protein kinases, and we have performed quantitative analysis of phenotypical responses in primary human umbilical vein cells (HUVEC). These microarrays enabled us to infect the target cells in a parallelized and miniaturized procedure without significant cross-contamination: Viruses were reversibly immobilized in spots in such a way that the seeded cells were confined to the area of the viral spots, thus simplifying the subsequent addressing of genetically modified cells for analysis. Computer-assisted image analysis of fluorescence images was applied to analyze the cellular response after shRNA expression. Both the expression level of knock-down target proteins as well as the functional output as measured by caspase 3 activity and DNA fractionation (TUNEL) were quantified. CONCLUSION: We have developed an adenoviral microarray technique suitable for miniaturized and parallelized analysis of gene function. The practicability of this technique was demonstrated by the analysis of several kinases involved in the activation of programmed cell death, both in tumor cells and in primary cells.


Sujet(s)
Séquençage par oligonucléotides en batterie/méthodes , ARN non traduit/analyse , Adenoviridae/génétique , Lignée cellulaire , Cellules cultivées , Extinction de l'expression des gènes , Vecteurs génétiques/composition chimique , Humains
17.
Mol Biochem Parasitol ; 142(2): 203-11, 2005 Aug.
Article de Anglais | MEDLINE | ID: mdl-15890416

RÉSUMÉ

The membrane-bound acid phosphatase (MBAP), a Type I membrane protein predominantly associated with endosomal/lysosomal structures of Leishmania mexicana promastigotes, contains motifs in its cytosolic COOH-terminal tail (-MEVWRRYMKFKNKQSEAIIV-COOH) akin to tyrosine- and di-leucine-based sorting signals in multicellular organisms. Here, we first show that the COOH-terminal residues IIV of MBAP, but not the Y-residue, are required for endosomal targeting, suggesting specific binding to an adaptor complex at the cell surface. We then determine whether specific binding can be saturated by analysing the efficiency of endosomal targeting for increasing numbers of MBAP molecules per cell. The ratio of the steady-state abundance of wild-type MBAP on the cell surface to MBAP on endosomes increases until the distribution is no longer different from that observed for a mutant MBAP which lacks the IIV-motif or for a glycosylphosphatidylinositol-anchored form, both of which are distributed according to bulk membrane flow. A quantitative analysis of these in vivo results indicates specific binding to a putative adaptor complex with an affinity of about 10-4M to 50,000 sorting sites on the cell surface.


Sujet(s)
Acid phosphatase/métabolisme , Protéines adaptatrices du transport vésiculaire/métabolisme , Régulation de l'expression des gènes , Leishmania mexicana/enzymologie , Protéines membranaires/métabolisme , Transport des protéines , Acid phosphatase/composition chimique , Acid phosphatase/génétique , Séquence d'acides aminés , Animaux , Endosomes/métabolisme , Cytométrie en flux , Membranes intracellulaires/métabolisme , Leishmania mexicana/génétique , Protéines membranaires/composition chimique , Protéines membranaires/génétique , Données de séquences moléculaires , Mutagenèse , Signaux de triage des protéines
18.
J Cell Sci ; 118(Pt 10): 2105-18, 2005 May 15.
Article de Anglais | MEDLINE | ID: mdl-15855239

RÉSUMÉ

In the parasitic protozoan Trypanosoma brucei, endocytosis and exocytosis occur exclusively at an invagination of the plasma membrane around the base of the flagellum, called the flagellar pocket, which actively communicates by vesicular membrane flow with cisternal/tubulovesicular endosomes. The division of the cell surface into three morphologically distinct sub-domains and the rapid plasma membrane turnover establishes T. brucei as an interesting model for investigations on the sorting and recycling of membrane proteins. In this study we show that the type I membrane protein TbMBAP1, an L-(+)-tartrate-sensitive acid phosphatase, is present in all endosomal membranes but is virtually absent from the lysosome membrane (where this type of protein is mainly found in other organisms) and is not detectable at the cell surface. The endosomal localization of TbMBAP1 is a function of protein abundance. Moderate overexpression (three- to fourfold) leads to an increased appearance within the flagellar pocket membrane. At higher levels the protein is found in the flagellum, and routing to the pellicular plasma membrane is observed at levels 10- to 25-fold above that of wild type. In other organisms L-(+)-tartrate-sensitive acid phosphatases appear to be dispensable but TbMBAP1 is essential, as shown by RNA interference, which causes growth arrest followed by cell death. Comparison of the phenotype of TbMBAP1-depleted cells with that of cells in which endocytosis or exocytosis has been specifically inhibited by RNAi against clathrin of RAB11, reveals that TbMBAP1 is essential for both incoming and recycling membrane traffic. During differentiation of the organism from bloodstream to insect stage, TbMBAP1 is down-regulated and differentially modified in parallel with a 10-fold decrease in the rate of endocytosis.


Sujet(s)
Acid phosphatase/métabolisme , Histidine/métabolisme , Isoenzymes/métabolisme , Protéines membranaires/métabolisme , Trypanosoma brucei brucei/métabolisme , Animaux , Mort cellulaire , Membrane cellulaire/métabolisme , Membrane cellulaire/ultrastructure , Clathrine/métabolisme , Régulation négative , Endocytose , Endosomes/enzymologie , Flagelles/métabolisme , Flagelles/ultrastructure , Microscopie immunoélectronique , Modèles moléculaires , Transport des protéines , Tartrate-resistant acid phosphatase , Trypanosoma brucei brucei/ultrastructure , Protéines G rab/métabolisme
19.
J Cell Sci ; 117(Pt 7): 1105-15, 2004 Mar 01.
Article de Anglais | MEDLINE | ID: mdl-14996937

RÉSUMÉ

The dense coat of glycosylphosphatidylinositol (GPI)-anchored variant surface glycoprotein (VSG) covering parasitic African trypanosomes is essential for survival in mammalian hosts. VSG is internalised and recycled exclusively via a specialised part of the plasma membrane, the flagellar pocket. Direct measurement of the kinetics of VSG endocytosis and recycling shows that the VSG cell-surface pool is turned over within 12 minutes. Correspondingly, the turnover of the intracellular pool (9+/-4% of total VSG) requires only 1 minute, and this is an exceptionally high rate considering that endocytosis and exocytosis are limited to only 5% of the cell surface area. Kinetic 3D co-localisation analysis using biotinylated VSG and a panel of compartmental markers provides consistent evidence for the itinerary of VSG through the cell: VSG is endocytosed in large clathrin-coated vesicles, which bud from the flagellar pocket membrane at a rate of 6-7 vesicles per second, and is then delivered to RAB5-positive early endosomes. From there, VSG is recycled to RAB11-positive recycling endosomes at two stages, either directly or via RAB7-positive, late endosomes. Small clathrin-coated vesicles carrying fluid-phase cargo and being depleted of VSG bud from early and recycling endosomes. These vesicles are postulated to deliver their content to late endosomes and/or the lysosome. The recycling endosomes give rise to RAB11-positive exocytic carriers that fuse with the flagellar pocket and thereby return VSG to the cell surface. VSG recycling provides an interesting model for studies on the cellular trafficking and sorting of GPI-anchored proteins.


Sujet(s)
Protéines de protozoaire/métabolisme , Trypanosoma brucei brucei/métabolisme , Glycoprotéines de surface variables du trypanosome/métabolisme , Séquence d'acides aminés , Animaux , Endocytose , Gènes de protozoaire , Glycosylphosphatidylinositols/métabolisme , Cinétique , Microscopie immunoélectronique , Données de séquences moléculaires , Protéines de protozoaire/génétique , Trypanosoma brucei brucei/génétique , Trypanosoma brucei brucei/ultrastructure , Glycoprotéines de surface variables du trypanosome/génétique
20.
Mol Biol Cell ; 14(5): 2029-40, 2003 May.
Article de Anglais | MEDLINE | ID: mdl-12802073

RÉSUMÉ

Recently, proteins linked to glycosylphosphatidylinositol (GPI) residues have received considerable attention both for their association with lipid microdomains and for their specific transport between cellular membranes. Basic features of trafficking of GPI-anchored proteins or glycolipids may be explored in flagellated protozoan parasites, which offer the advantage that their surface is dominated by these components. In Trypanosoma brucei, the GPI-anchored variant surface glycoprotein (VSG) is efficiently sorted at multiple intracellular levels, leading to a 50-fold higher membrane concentration at the cell surface compared with the endoplasmic reticulum. We have studied the membrane and VSG flow at an invagination of the plasma membrane, the flagellar pocket, the sole region for endo- and exocytosis in this organism. VSG enters trypanosomes in large clathrin-coated vesicles (135 nm in diameter), which deliver their cargo to endosomes. In the lumen of cisternal endosomes, VSG is concentrated by default, because a distinct class of small clathrin-coated vesicles (50-60 nm in diameter) budding from the cisternae is depleted in VSG. TbRAB11-positive cisternal endosomes, containing VSG, fragment by an unknown process giving rise to intensely TbRAB11- as well as VSG-positive, disk-like carriers (154 nm in diameter, 34 nm in thickness), which are shown to fuse with the flagellar pocket membrane, thereby recycling VSG back to the cell surface.


Sujet(s)
Vésicules tapissées de clathrine/physiologie , Endocytose/physiologie , Endosomes/physiologie , Exocytose/physiologie , Glycosylphosphatidylinositols/physiologie , Protéines G rab/physiologie , Animaux , Endosomes/ultrastructure , Flagelles/physiologie , Appareil de Golgi/ultrastructure , Microscopie électronique , Trypanosoma brucei brucei/physiologie , Glycoprotéines de surface variables du trypanosome/physiologie
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