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1.
Mol Ther Nucleic Acids ; 35(1): 102114, 2024 Mar 12.
Article de Anglais | MEDLINE | ID: mdl-38314096

RÉSUMÉ

tRNA-derived small RNAs (tsRNAs) constitute a subgroup of small noncoding RNAs (ncRNAs) originating from tRNA molecules. Their rich content, evolutionary conservatism, high stability, and widespread existence makes them significant in disease research. These characteristics have positioned tsRNAs as key players in various physiological and pathological processes. tsRNA actively participates in regulating many cellular processes, such as cell death, proliferation, and metabolism. tsRNAs could be promising diagnostic markers for cardiovascular diseases (CVDs). tsRNAs have been identified in serums, suggesting their utility as early indicators for the diagnosis of CVDs. Moreover, the regulatory roles of tsRNAs in CVDs make them promising targets for therapeutic intervention. This review provides a succinct overview of the characteristics, classification, and regulatory functions of tsRNAs in the context of CVDs. By shedding light on the intricate roles of tsRNAs, this knowledge could pave the way for the development of innovative diagnostic tools and therapeutic strategies for CVDs.

2.
Health Inf Sci Syst ; 11(1): 47, 2023 Dec.
Article de Anglais | MEDLINE | ID: mdl-37810417

RÉSUMÉ

Accurate differentiation between pulmonary arteries and veins (A/V) holds pivotal importance in the realm of diagnosing and treating pulmonary ailments. This study presents a new approach that leverages grayscale differences between A/V. Distinctions are measured using median and mean grayscale values within the vessel area. Initially, adherent regions are removed based on vessel structure. The trunk regions are segmented using gray level information near the heart region of the lung boundary. Incorrectly segmented vessels are corrected based on connectivity. For distal lung vessels, a similar distance field is established using a graph-cut method. Experimental results show the algorithm's superior segmentation accuracy, achieving 97.26% compared to the CNN-based average accuracy of 91.67%. Error branches are more concentrated, aiding subsequent manual and automatic correction. This demonstrates the algorithm's effective segmentation of pulmonary A/V.

3.
Adv Sci (Weinh) ; 10(34): e2304329, 2023 Dec.
Article de Anglais | MEDLINE | ID: mdl-37870216

RÉSUMÉ

PIWI-interacting RNAs (piRNAs) are highly expressed in various cardiovascular diseases. However, their role in cardiomyocyte death caused by ischemia/reperfusion (I/R) injury, especially necroptosis, remains elusive. In this study, a heart necroptosis-associated piRNA (HNEAP) is found that regulates cardiomyocyte necroptosis by targeting DNA methyltransferase 1 (DNMT1)-mediated 5-methylcytosine (m5 C) methylation of the activating transcription factor 7 (Atf7) mRNA transcript. HNEAP expression level is significantly elevated in hypoxia/reoxygenation (H/R)-exposed cardiomyocytes and I/R-injured mouse hearts. Loss of HNEAP inhibited cardiomyocyte necroptosis and ameliorated cardiac function in mice. Mechanistically, HNEAP directly interacts with DNMT1 and attenuates m5 C methylation of the Atf7 mRNA transcript, which increases Atf7 expression level. ATF7 can further downregulate the transcription of Chmp2a, an inhibitor of necroptosis, resulting in the reduction of Chmp2a level and the progression of cardiomyocyte necroptosis. The findings reveal that piRNA-mediated m5 C methylation is involved in the regulation of cardiomyocyte necroptosis. Thus, the HNEAP-DNMT1-ATF7-CHMP2A axis may be a potential target for attenuating cardiac injury caused by necroptosis in ischemic heart disease.


Sujet(s)
Myocytes cardiaques , Lésion d'ischémie-reperfusion , Souris , Animaux , Myocytes cardiaques/métabolisme , ARN messager/métabolisme , ARN interagissant avec Piwi , Nécroptose/génétique , Méthylation , Lésion d'ischémie-reperfusion/métabolisme , Facteurs de transcription ATF/métabolisme
4.
J Biomed Sci ; 30(1): 45, 2023 Jun 27.
Article de Anglais | MEDLINE | ID: mdl-37370086

RÉSUMÉ

BACKGROUND: Emerging research has reported that circular RNAs (circRNAs) play important roles in cardiac cell death after myocardial ischemia and reperfusion (I/R). Ferroptosis, a new form of cell death discovered in recent years, has been proven to participate in the regulation of myocardial I/R. This study used circRNA sequencing to explore the key circRNA in the regulation of cardiac ferroptosis after I/R and study the mechanisms of potential circRNA function. METHODS: We performed circRNA sequencing to explore circRNAs differentially expressed after myocardial I/R. We used quantitative polymerase chain reactions to determine the circRNA expression in different tissues and detect the circRNA subcellular localization in the cardiomyocyte. Gain- and loss-of-function experiments were aimed to examine the function of circRNAs in cardiomyocyte ferroptosis and cardiac tissue damage after myocardial I/R. RNA pull-down was applied to explore proteins interacting with circRNA. RESULTS: Here, we identified a ferroptosis-associated circRNA (FEACR) that has an underlying regulatory role in cardiomyocyte ferroptosis. FEACR overexpression suppressed I/R-induced myocardial infarction and ameliorated cardiac function. FEACR inhibition induces ferroptosis in cardiomyocytes and FEACR overexpression inhibits hypoxia and reoxygenation-induced ferroptosis. Mechanistically, FEACR directly bound to nicotinamide phosphoribosyltransferase (NAMPT) and enhanced the protein stability of NAMPT, which increased NAMPT-dependent Sirtuin1 (Sirt1) expression, which promoted the transcriptional activity of forkhead box protein O1 (FOXO1) by reducing FOXO1 acetylation levels. FOXO1 further upregulated the transcription of ferritin heavy chain 1 (Fth1), a ferroptosis suppressor, which resulted in the inhibition of cardiomyocyte ferroptosis. CONCLUSIONS: Our finding reveals that the circRNA FEACR-mediated NAMPT-Sirt1-FOXO1-FTH1 signaling axis participates in the regulation of cardiomyocyte ferroptosis and protects the heart function against I/R injury. Thus, FEACR and its downstream factors could be novel targets for alleviating ferroptosis-related myocardial injury in ischemic heart diseases.


Sujet(s)
Ferroptose , Ischémie myocardique , Lésion de reperfusion myocardique , Humains , ARN circulaire/génétique , Lésion de reperfusion myocardique/génétique , Lésion de reperfusion myocardique/métabolisme , Ferroptose/génétique , Nicotinamide phosphoribosyltransferase/génétique , Nicotinamide phosphoribosyltransferase/métabolisme , Sirtuine-1/génétique , Sirtuine-1/métabolisme , Myocytes cardiaques/métabolisme , Apoptose
5.
Mol Genet Genomics ; 298(5): 1121-1133, 2023 Sep.
Article de Anglais | MEDLINE | ID: mdl-37318628

RÉSUMÉ

The regulation of gene expression in mammalian cells by combining various cis-regulatory features has rarely been discussed. In this study, we constructed expression vectors containing various combinations of regulatory elements to examine the regulation of gene expression by different combinations of cis-regulatory elements. The effects of four promoters (CMV promoter, PGK promoter, Polr2a promoter, and EF-1α core promoter), two enhancers (CMV enhancer and SV40 enhancer), two introns (EF-1α intron A and hybrid intron), two terminators (CYC1 terminator and TEF terminator), and their different combinations on downstream gene expression were compared in various mammalian cells using fluorescence microscopy to observe fluorescence, quantitative real-time PCR (qRT-PCR), and western blot. The receptor binding domain (RBD) sequence from severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) spike protein was used to replace the eGFP sequence in the expression vector and the RBD expression was detected by qRT-PCR and western blot. The results showed that protein expression can be regulated by optimizing the combination of cis-acting elements. The vector with the CMV enhancer, EF-1α core promoter, and TEF terminator was found to express approximately threefold higher eGFP than the unmodified vector in different animal cells, as well as 2.63-fold higher recombinant RBD protein than the original vector in HEK-293T cells. Moreover, we suggest that combinations of multiple regulatory elements capable of regulating gene expression do not necessarily exhibit synergistic effects to enhance expression further. Overall, our findings provide insights into biological applications that require the regulation of gene expression and will help to optimize expression vectors for biosynthesis and other fields. Additionally, we provide valuable insights into the production of RBD proteins, which may aid in developing reagents for diagnosis and treatment during the COVID-19 pandemic.


Sujet(s)
COVID-19 , Infections à cytomégalovirus , Animaux , Humains , Vecteurs génétiques/génétique , Facteur-1 d'élongation de la chaîne peptidique/génétique , Pandémies , SARS-CoV-2/génétique , Mammifères/génétique , Infections à cytomégalovirus/génétique , Éléments activateurs (génétique) , Régulation de l'expression des gènes
6.
Cell Death Differ ; 30(7): 1786-1798, 2023 07.
Article de Anglais | MEDLINE | ID: mdl-37286744

RÉSUMÉ

The mitochondrial transmembrane (TMEM) protein family has several essential physiological functions. However, its roles in cardiomyocyte proliferation and cardiac regeneration remain unclear. Here, we detected that TMEM11 inhibits cardiomyocyte proliferation and cardiac regeneration in vitro. TMEM11 deletion enhanced cardiomyocyte proliferation and restored heart function after myocardial injury. In contrast, TMEM11-overexpression inhibited neonatal cardiomyocyte proliferation and regeneration in mouse hearts. TMEM11 directly interacted with METTL1 and enhanced m7G methylation of Atf5 mRNA, thereby increasing ATF5 expression. A TMEM11-dependent increase in ATF5 promoted the transcription of Inca1, an inhibitor of cyclin-dependent kinase interacting with cyclin A1, which suppressed cardiomyocyte proliferation. Hence, our findings revealed that TMEM11-mediated m7G methylation is involved in the regulation of cardiomyocyte proliferation, and targeting the TMEM11-METTL1-ATF5-INCA1 axis may serve as a novel therapeutic strategy for promoting cardiac repair and regeneration.


Sujet(s)
Myocytes cardiaques , Maturation post-traductionnelle des protéines , Animaux , Souris , Prolifération cellulaire/génétique , Méthylation , Myocytes cardiaques/métabolisme , ARN messager/génétique , ARN messager/métabolisme
7.
Eng Appl Artif Intell ; 122: 106157, 2023 Jun.
Article de Anglais | MEDLINE | ID: mdl-36968247

RÉSUMÉ

Individuals in any country are badly impacted both economically and physically whenever an epidemic of infectious illnesses breaks out. A novel coronavirus strain was responsible for the outbreak of the coronavirus sickness in 2019. Corona Virus Disease 2019 (COVID-19) is the name that the World Health Organization (WHO) officially gave to the pneumonia that was caused by the novel coronavirus on February 11, 2020. The use of models that are informed by machine learning is currently a major focus of study in the field of improved forecasting. By displaying annual trends, forecasting models can be of use in performing impact assessments of potential outcomes. In this paper, proposed forecast models consisting of time series models such as long short-term memory (LSTM), bidirectional long short-term memory (Bi-LSTM), generalized regression unit (GRU), and dense-LSTM have been evaluated for time series prediction of confirmed cases, deaths, and recoveries in 12 major countries that have been affected by COVID-19. Tensorflow1.0 was used for programming. Indices known as mean absolute error (MAE), root means square error (RMSE), Median Absolute Error (MEDAE) and r2 score are utilized in the process of evaluating the performance of models. We presented various ways to time-series forecasting by making use of LSTM models (LSTM, BiLSTM), and we compared these proposed methods to other machine learning models to evaluate the performance of the models. Our study suggests that LSTM based models are among the most advanced models to forecast time series data.

8.
Mol Ther ; 31(3): 847-865, 2023 03 01.
Article de Anglais | MEDLINE | ID: mdl-36639869

RÉSUMÉ

The role of Abraxas 2 (ABRO1 or KIAA0157), a component of the lysine63-linked deubiquitinating system, in the cardiomyocyte proliferation and myocardial regeneration is unknown. Here, we found that ABRO1 regulates cardiomyocyte proliferation and cardiac regeneration in the postnatal heart by targeting METTL3-mediated m6A methylation of Psph mRNA. The deletion of ABRO1 increased cardiomyocyte proliferation in hearts and restored the heart function after myocardial injury. On the contrary, ABRO1 overexpression significantly inhibited the neonatal cardiomyocyte proliferation and cardiac regeneration in mouse hearts. The mechanism by which ABRO1 regulates cardiomyocyte proliferation mainly involved METTL3-mediated Psph mRNA methylation and CDK2 phosphorylation. In the early postnatal period, METTL3-dependent m6A methylation promotes cardiomyocyte proliferation by hypermethylation of Psph mRNA and upregulating PSPH expression. PSPH dephosphorylates cyclin-dependent kinase 2 (CDK2), a positive regulator of cell cycle, at Thr14/Tyr15 and increases its activity. Upregulation of ABRO1 restricts METTL3 activity and halts the cardiomyocyte proliferation in the postnatal hearts. Thus, our study reveals that ABRO1 is an essential contributor in the cell cycle withdrawal and attenuation of proliferative response in the postnatal cardiomyocytes and could act as a potential target to accelerate cardiomyocyte proliferation and cardiac repair in the adult heart.


Sujet(s)
Myocarde , Myocytes cardiaques , Protéines associées à la matrice nucléaire , Phosphoric monoester hydrolases , Animaux , Souris , Animaux nouveau-nés , Prolifération cellulaire , Coeur/physiologie , Myocytes cardiaques/métabolisme , ARN messager/métabolisme , Protéines associées à la matrice nucléaire/métabolisme , Phosphoric monoester hydrolases/métabolisme
9.
Cardiovasc Drugs Ther ; 37(1): 181-198, 2023 02.
Article de Anglais | MEDLINE | ID: mdl-34269929

RÉSUMÉ

Circular RNA (circRNA) has a closed-loop structure, and its 3' and 5' ends are directly covalently connected by reverse splicing, which is more stable than linear RNA. CircRNAs usually possess microRNA (miRNA) binding sites, which can bind miRNAs and inhibit miRNA function. Many studies have shown that circRNAs are involved in the processes of cell senescence, proliferation and apoptosis and a series of signalling pathways, playing an important role in the prevention and treatment of diseases. CircRNAs are potential biological diagnostic markers and therapeutic targets for cardiovascular diseases (CVDs). To identify biomarkers and potential effective therapeutic targets without toxicity for heart disease, we summarize the biogenesis, biology, characterization and functions of circRNAs in CVDs, hoping that this information will shed new light on the prevention and treatment of CVDs.


Sujet(s)
Maladies cardiovasculaires , Cardiopathies , microARN , Humains , ARN circulaire/génétique , Maladies cardiovasculaires/diagnostic , Maladies cardiovasculaires/génétique , Maladies cardiovasculaires/thérapie , ARN/génétique , microARN/génétique , microARN/usage thérapeutique , Marqueurs biologiques
10.
Cell Death Discov ; 8(1): 394, 2022 Sep 20.
Article de Anglais | MEDLINE | ID: mdl-36127318

RÉSUMÉ

The mechanism of cardiovascular diseases (CVDs) is complex and threatens human health. Cardiomyocyte death is an important participant in the pathophysiological basis of CVDs. Ferroptosis is a new type of iron-dependent programmed cell death caused by excessive accumulation of iron-dependent lipid peroxides and reactive oxygen species (ROS) and abnormal iron metabolism. Ferroptosis differs from other known cell death pathways, such as apoptosis, necrosis, necroptosis, autophagy and pyroptosis. Several compounds have been shown to induce or inhibit ferroptosis by regulating related key factors or signalling pathways. Recent studies have confirmed that ferroptosis is associated with the development of diverse CVDs and may be a potential therapeutic drug target for CVDs. In this review, we summarize the characteristics and related mechanisms of ferroptosis and focus on its role in CVDs, with the goal of inspiring novel treatment strategies.

11.
Adv Sci (Weinh) ; 9(8): e2106058, 2022 03.
Article de Anglais | MEDLINE | ID: mdl-35138696

RÉSUMÉ

PIWI-interacting RNAs (piRNAs) are abundantly expressed in heart. However, their functions and molecular mechanisms during myocardial infarction remain unknown. Here, a heart-apoptosis-associated piRNA (HAAPIR), which regulates cardiomyocyte apoptosis by targeting N-acetyltransferase 10 (NAT10)-mediated N4-acetylcytidine (ac4 C) acetylation of transcription factor EC (Tfec) mRNA transcript, is identified. HAAPIR deletion attenuates ischemia/reperfusion induced myocardial infarction and ameliorate cardiac function compared to WT mice. Mechanistically, HAAPIR directly interacts with NAT10 and enhances ac4 C acetylation of Tfec mRNA transcript, which increases Tfec expression. TFEC can further upregulate the transcription of BCL2-interacting killer (Bik), a pro-apoptotic factor, which results in the accumulation of Bik and progression of cardiomyocyte apoptosis. The findings reveal that piRNA-mediated ac4 C acetylation mechanism is involved in the regulation of cardiomyocyte apoptosis. HAAPIR-NAT10-TFEC-BIK signaling axis can be potential target for the reduction of myocardial injury caused by cardiomyocyte apoptosis in ischemia heart diseases.


Sujet(s)
Infarctus du myocarde , Myocytes cardiaques , Acétylation , Acetyltransferases/métabolisme , Animaux , Souris , Infarctus du myocarde/génétique , Infarctus du myocarde/métabolisme , Myocytes cardiaques/métabolisme , ARN messager , Petit ARN interférent/métabolisme
12.
Viruses ; 14(2)2022 02 15.
Article de Anglais | MEDLINE | ID: mdl-35215987

RÉSUMÉ

African swine fever virus (ASFV) is responsible for enormous economic losses in the global swine industry. The ASFV genome encodes approximate 160 proteins, most of whose functions remain largely unknown. In this study, we examined the roles of ASFV K205R in endoplasmic reticulum (ER) stress, autophagy, and inflammation. We observed that K205R was located in both the cytosolic and membrane fractions, and formed stress granules in cells. Furthermore, K205R triggered ER stress and activated the unfolded protein response through activating the transcription factor 6, ER to nucleus signaling 1, and eukaryotic translation initiation factor 2 alpha kinase 3 (EIF2AK3/PERK) signaling pathways. Moreover, K205R inhibited the serine/threonine kinase 1 and the mechanistic target of the rapamycin kinase signaling pathway, thereby activating unc-51 like autophagy activating kinase 1, and hence autophagy. In addition, K205R stimulated the translocation of P65 into the nucleus and the subsequent activation of the nuclear factor kappa B (NF-κB) signaling pathway. Inhibition of ER stress with a PERK inhibitor attenuated K205R-induced autophagy and NF-κB activation. Our data demonstrated a previously uncharacterized role of ASFV K205R in ER stress, autophagy, and the NF-κB signaling pathway.


Sujet(s)
Virus de la peste porcine africaine/métabolisme , Autophagie , Stress du réticulum endoplasmique , Transduction du signal , Protéines virales/métabolisme , Virus de la peste porcine africaine/génétique , Animaux , Lignée cellulaire/virologie , Humains , Facteur de transcription NF-kappa B/métabolisme , Suidae , Protéines virales/génétique
13.
Autophagy ; 18(8): 1801-1821, 2022 08.
Article de Anglais | MEDLINE | ID: mdl-34822318

RÉSUMÉ

Alphaherpesvirus infection results in severe health consequences in a wide range of hosts. USPs are the largest subfamily of deubiquitinating enzymes that play critical roles in immunity and other cellular functions. To investigate the role of USPs in alphaherpesvirus replication, we assessed 13 USP inhibitors for PRV replication. Our data showed that all the tested compounds inhibited PRV replication, with the USP14 inhibitor b-AP15 exhibiting the most dramatic effect. Ablation of USP14 also influenced PRV replication, whereas replenishment of USP14 in USP14 null cells restored viral replication. Although inhibition of USP14 induced the K63-linked ubiquitination of PRV VP16 protein, its degradation was not dependent on the proteasome. USP14 directly bound to ubiquitin chains on VP16 through its UBL domain during the early stage of viral infection. Moreover, USP14 inactivation stimulated EIF2AK3/PERK- and ERN1/IRE1-mediated signaling pathways, which were responsible for VP16 degradation through SQSTM1/p62-mediated selective macroautophagy/autophagy. Ectopic expression of non-ubiquitinated VP16 fully rescued PRV replication. Challenge of mice with b-AP15 activated ER stress and autophagy and inhibited PRV infection in vivo. Our results suggested that USP14 was a potential therapeutic target to treat alphaherpesvirus-induced infectious diseases.Abbreviations ATF4: activating transcription factor 4; ATF6: activating transcription factor 6; ATG5: autophagy related 5; ATG12: autophagy related 12; CCK-8: cell counting kit-8; Co-IP: co-immunoprecipitation; CRISPR: clustered regulatory interspaced short palindromic repeat; Cas9: CRISPR associated system 9; DDIT3/CHOP: DNA-damage inducible transcript 3; DNAJB9/ERdj4: DnaJ heat shock protein family (Hsp40) member B9; DUBs: deubiquitinases; EIF2A/eIF2α: eukaryotic translation initiation factor 2A; EIF2AK3/PERK: eukaryotic translation initiation factor 2 alpha kinase 3; EP0: ubiquitin E3 ligase ICP0; ER: endoplasmic reticulum; ERN1/IRE1: endoplasmic reticulum (ER) to nucleus signaling 1; FOXO1: forkhead box O1; FRET: Förster resonance energy transfer; HSPA5/BiP: heat shock protein 5; HSV: herpes simplex virus; IE180: transcriptional regulator ICP4; MAP1LC3/LC3: microtube-associated protein 1 light chain 3; MOI: multiplicity of infection; MTOR: mechanistic target of rapamycin kinase; PPP1R15A/GADD34: protein phosphatase 1, regulatory subunit 15A; PRV: pseudorabies virus; PRV gB: PRV glycoprotein B; PRV gE: PRV glycoprotein E; qRT-PCR: quantitative real-time polymerase chain reaction; sgRNA: single guide RNA; siRNA: small interfering RNA; SQSTM1/p62: sequestosome 1; TCID50: tissue culture infective dose; UB: ubiquitin; UBA: ubiquitin-associated domain; UBL: ubiquitin-like domain; UL9: DNA replication origin-binding helicase; UPR: unfolded protein response; USPs: ubiquitin-specific proteases; VHS: virion host shutoff; VP16: viral protein 16; XBP1: X-box binding protein 1; XBP1s: small XBP1; XBP1(t): XBP1-total.


Sujet(s)
Alphaherpesvirinae , Autophagie , Stress du réticulum endoplasmique , Protéine Vmw65 de l'herpesvirus humain , Ubiquitin thiolesterase , Alphaherpesvirinae/pathogénicité , Alphaherpesvirinae/physiologie , Animaux , Prolifération cellulaire , Protéine Vmw65 de l'herpesvirus humain/métabolisme , Macroautophagie , Souris , Séquestosome-1 , Ubiquitin thiolesterase/métabolisme
14.
Cell Death Differ ; 29(3): 527-539, 2022 03.
Article de Anglais | MEDLINE | ID: mdl-34588633

RÉSUMÉ

Circular RNAs (circRNAs) are differentially expressed in various cardiovascular disease including myocardial ischemia-reperfusion (I/R) injury. However, their functional impact on cardiomyocyte cell death, in particular, in necrotic forms of death remains elusive. In this study, we found that the level of mmu_circ_000338, a cardiac- necroptosis-associated circRNA (CNEACR), was reduced in hypoxia-reoxygenation (H/R) exposed cardiomyocytes and I/R-injured mice hearts. The enforced expression of CNEACR attenuated the necrotic form of cardiomyocyte death caused by H/R and suppressed of myocardial necrosis in I/R injured mouse heart, which was accompanied by a marked reduction of myocardial infarction size and improved cardiac function. Mechanistically, CNEACR directly binds to histone deacetylase (HDAC7) in the cytoplasm and interferes its nuclear entry. This leads to attenuation of HDAC7-dependent suppression of forkhead box protein A2 (Foxa2) transcription, which can repress receptor-interacting protein kinase 3 (Ripk3) gene by binding to its promoter region. In addition, CNEACR-mediated upregulation of FOXA2 inhibited RIPK3-dependent necrotic/necroptotic death of cardiomyocytes. Our study reveals that circRNAs such as CNEACR can regulate the cardiomyocyte necroptosis associated activity of HDACs, promotes cell survival and improves cardiac function in I/R-injured heart. Hence, the CNEACR/HDAC7/Foxa2/ RIPK3 axis could be an efficient target for alleviating myocardial damage caused by necroptotic death in ischemia heart diseases.


Sujet(s)
Infarctus du myocarde , Lésion de reperfusion myocardique , Animaux , Facteur nucléaire hépatocytaire HNF-3 bêta/métabolisme , Souris , Infarctus du myocarde/génétique , Infarctus du myocarde/métabolisme , Lésion de reperfusion myocardique/génétique , Lésion de reperfusion myocardique/métabolisme , Myocytes cardiaques/métabolisme , Nécroptose , ARN circulaire/génétique
15.
J Xray Sci Technol ; 29(6): 1123-1137, 2021.
Article de Anglais | MEDLINE | ID: mdl-34421004

RÉSUMÉ

BACKGROUND: The distribution of pulmonary vessels in computed tomography (CT) and computed tomography angiography (CTA) images of lung is important for diagnosing disease, formulating surgical plans and pulmonary research. PURPOSE: Based on the pulmonary vascular segmentation task of International Symposium on Image Computing and Digital Medicine 2020 challenge, this paper reviews 12 different pulmonary vascular segmentation algorithms of lung CT and CTA images and then objectively evaluates and compares their performances. METHODS: First, we present the annotated reference dataset of lung CT and CTA images. A subset of the dataset consisting 7,307 slices for training and 3,888 slices for testing was made available for participants. Second, by analyzing the performance comparison of different convolutional neural networks from 12 different institutions for pulmonary vascular segmentation, the reasons for some defects and improvements are summarized. The models are mainly based on U-Net, Attention, GAN, and multi-scale fusion network. The performance is measured in terms of Dice coefficient, over segmentation rate and under segmentation rate. Finally, we discuss several proposed methods to improve the pulmonary vessel segmentation results using deep neural networks. RESULTS: By comparing with the annotated ground truth from both lung CT and CTA images, most of 12 deep neural network algorithms do an admirable job in pulmonary vascular extraction and segmentation with the dice coefficients ranging from 0.70 to 0.85. The dice coefficients for the top three algorithms are about 0.80. CONCLUSIONS: Study results show that integrating methods that consider spatial information, fuse multi-scale feature map, or have an excellent post-processing to deep neural network training and optimization process are significant for further improving the accuracy of pulmonary vascular segmentation.


Sujet(s)
Angiographie par tomodensitométrie , Traitement d'image par ordinateur , Humains , Traitement d'image par ordinateur/méthodes , Poumon/imagerie diagnostique , , Tomodensitométrie
16.
J Cell Mol Med ; 25(11): 4893-4901, 2021 06.
Article de Anglais | MEDLINE | ID: mdl-33942984

RÉSUMÉ

PIWI-interacting RNAs (piRNAs) are recently discovered small non-coding RNAs consisting of 24-35 nucleotides, usually including a characteristic 5-terminal uridine and an adenosine at position 10. PIWI proteins can specifically bind to the unique structure of the 3' end of piRNAs. In the past, it was thought that piRNAs existed only in the reproductive system, but recently, it was reported that piRNAs are also expressed in several other human tissues with tissue specificity. Growing evidence shows that piRNAs and PIWI proteins are abnormally expressed in various diseases, including cancers, neurodegenerative diseases and ageing, and may be potential biomarkers and therapeutic targets. This review aims to discuss the current research status regarding piRNA biogenetic processes, functions, mechanisms and emerging roles in various diseases.


Sujet(s)
Vieillissement , Tumeurs/anatomopathologie , Maladies neurodégénératives/anatomopathologie , Petit ARN interférent/génétique , Animaux , Épigenèse génétique , Humains , Tumeurs/génétique , Maladies neurodégénératives/génétique
17.
Oxid Med Cell Longev ; 2020: 5860356, 2020.
Article de Anglais | MEDLINE | ID: mdl-33282111

RÉSUMÉ

Reduction oxidation (REDOX) reaction is crucial in life activities, and its dynamic balance is regulated by ROS. Reactive oxygen species (ROS) is associated with a variety of metabolic diseases involving in multiple cellular signalling in pathologic and physiological signal transduction. ROS are the by-products of numerous enzymatic reactions in various cell compartments, including the cytoplasm, cell membrane, endoplasmic reticulum (ER), mitochondria, and peroxisome. ROS signalling is not only involved in normal physiological processes but also causes metabolic dysfunction and maladaptive responses to inflammatory signals, which depends on the cell type or tissue environment. Excess oxidants are able to alter the normal structure and function of DNA, lipids, and proteins, leading to mutations or oxidative damage. Therefore, excessive oxidative stress is usually regarded as the cause of various pathological conditions, such as cancer, neurodegeneration, cardiovascular diseases (CVDs), diabetes, and kidney diseases. Currently, it has been possible to detect diabetes and other cardiac diseases by detecting derivatives accompanied by oxidative stress in vivo as biomarkers, but there is no effective method to treat these diseases. In consequence, it is essential for us to seek new therapy targeting these diseases through understanding the role of ROS signalling in regulating metabolic activity, inflammatory activation, and cardiac diseases related to metabolic dysfunction. In this review, we summarize the current literature on REDOX and its role in the regulation of cardiac metabolism and inflammation, focusing on ROS, local REDOX signalling pathways, and other mechanisms.


Sujet(s)
Maladies cardiovasculaires/métabolisme , Mitochondries/effets des médicaments et des substances chimiques , Oxydoréduction , Espèces réactives de l'oxygène/métabolisme , Animaux , Maladies cardiovasculaires/traitement médicamenteux , Humains , Inflammation/traitement médicamenteux , Inflammation/métabolisme , Mitochondries/métabolisme , Stress oxydatif/effets des médicaments et des substances chimiques
18.
Nat Cell Biol ; 22(11): 1319-1331, 2020 11.
Article de Anglais | MEDLINE | ID: mdl-33020597

RÉSUMÉ

PIWI-interacting RNAs (piRNAs) are abundantly expressed during cardiac hypertrophy. However, their functions and molecular mechanisms remain unknown. Here, we identified a cardiac-hypertrophy-associated piRNA (CHAPIR) that promotes pathological hypertrophy and cardiac remodelling by targeting METTL3-mediated N6-methyladenosine (m6A) methylation of Parp10 mRNA transcripts. CHAPIR deletion markedly attenuates cardiac hypertrophy and restores heart function, while administration of a CHAPIR mimic enhances the pathological hypertrophic response in pressure-overloaded mice. Mechanistically, CHAPIR-PIWIL4 complexes directly interact with METTL3 and block the m6A methylation of Parp10 mRNA transcripts, which upregulates PARP10 expression. The CHAPIR-dependent increase in PARP10 promotes the mono-ADP-ribosylation of GSK3ß and inhibits its kinase activity, which results in the accumulation of nuclear NFATC4 and the progression of pathological hypertrophy. Hence, our findings reveal that a piRNA-mediated RNA epigenetic mechanism is involved in the regulation of cardiac hypertrophy and that the CHAPIR-METTL3-PARP10-NFATC4 signalling axis could be therapeutically targeted for treating pathological hypertrophy and maladaptive cardiac remodelling.


Sujet(s)
Adénosine/analogues et dérivés , Ventricules cardiaques/enzymologie , Hypertrophie ventriculaire gauche/enzymologie , Methyltransferases/métabolisme , Myocytes cardiaques/enzymologie , Poly(ADP-ribose) polymerases/métabolisme , Protéines proto-oncogènes/métabolisme , ARN messager/métabolisme , Petit ARN interférent/métabolisme , Fonction ventriculaire gauche , Adénosine/métabolisme , Animaux , Cellules cultivées , Modèles animaux de maladie humaine , Régulation de l'expression des gènes codant pour des enzymes , Glycogen synthase kinase 3 beta/génétique , Glycogen synthase kinase 3 beta/métabolisme , Ventricules cardiaques/anatomopathologie , Hypertrophie ventriculaire gauche/génétique , Hypertrophie ventriculaire gauche/anatomopathologie , Hypertrophie ventriculaire gauche/physiopathologie , Mâle , Méthylation , Methyltransferases/génétique , Souris de lignée C57BL , Souris knockout , Myocytes cardiaques/anatomopathologie , Facteurs de transcription NFATC/génétique , Facteurs de transcription NFATC/métabolisme , Poly(ADP-ribose) polymerases/génétique , Protéines proto-oncogènes/génétique , Stabilité de l'ARN , ARN messager/génétique , Petit ARN interférent/génétique , Transduction du signal , Remodelage ventriculaire
19.
Biomater Sci ; 8(18): 5020-5028, 2020 Sep 15.
Article de Anglais | MEDLINE | ID: mdl-32844842

RÉSUMÉ

3D printing of chitosan hydrogels has attracted wide interest because of their excellent biocompatibility, antibacterial activities, biodegradability, zero toxicity and low cost. However, chitosan inks are often involved in toxic and organic solvents. Moreover, the recently reported 3D-printed chitosan scaffolds lack enough strength, thus limiting their use in tissue engineering. Here, we reported a chitosan ink obtained by dissolving chitosan into an alkali aqueous solution. This chitosan ink is a stable solution at low temperature (5 °C), but once heated, the chitosan chains self-assemble to lead to gelation. Based on this principle, a corresponding direct ink writing (DIW) method was developed to print high-strength chitosan hydrogels. Specifically, the chitosan ink was extruded into heated deionized water to complete the in situ gelation. The temperature of the nozzle and hot water was well controlled to keep the printing process stable. The rheological behavior of the chitosan ink was investigated and the printing parameters were systematically studied to print chitosan hydrogel scaffolds with high quality and high strength. Based on these, high-strength (2.31 MPa for compressive strength) and complex chitosan hydrogel structures can be directly printed. The cell culture and the wound healing results further show that the printed chitosan scaffolds with this method have great potential in tissue engineering.


Sujet(s)
Chitosane , Hydrogels , Impression tridimensionnelle , Solvants , Ingénierie tissulaire , Structures d'échafaudage tissulaires
20.
ACS Appl Mater Interfaces ; 12(10): 12068-12074, 2020 Mar 11.
Article de Anglais | MEDLINE | ID: mdl-32066245

RÉSUMÉ

Four-dimensional (4D) printing of swellable materials have been viewed as an ideal approach to build shape morphing architectures. However, there is less variety in high-performance swellable materials, limiting its development. To address this challenge, we proposed a new strategy for designing high-performance thermal-responsive swellable materials. The reversible liquid-vapor phase change of embedded low boiling point liquid chambers and functional liquid metal fillers endows the designed elastomer with the reversible thermal-responsive swellable property with high stability, fast response speed, and large equilibrium deformation. Notably, liquid metal fillers play a crucial role in improving the thermal-responsive property via improving the thermal conductivity and fracture toughness and decreasing the stiffness. To demonstrate the feasibility of constructing shape morphing architectures with proposed thermal-responsive liquid metal elastomers, typical bilayer structures were printed and investigated. By altering the key design parameters, the response speed and equilibrium deformation can be adjusted as needed. Therefore, complex shape morphing architectures can be printed. This study could provide a new avenue to design swellable material systems for 4D printing of shape morphing architectures.

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