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1.
MethodsX ; 13: 102853, 2024 Dec.
Article de Anglais | MEDLINE | ID: mdl-39105090

RÉSUMÉ

Phenolic compounds, abundant secondary metabolites in plants, profoundly influence soil ecosystems, plant growth, and interactions with herbivores. Phenolic in soil microorganisms have the potential to impact a wide range of activities in plant-soil interactions. However, the existing methods for measuring microbial activity are typically time-consuming, intricate, and expensive. In this study, we propose modifications to the method used for the extraction and quantification of various types of phenolics in soil and plant tissues. There have been substantial advancements in research aimed at extracting, identifying, and quantifying phenolic compounds in the plant and soil samples. This study discusses the use of different methodologies in the analysis of phenolic compounds. In addition, we investigated the effect of phenolics on plant growth and cues in gall-forming under environmental disturbances.•This method is the optimum way to extract phenolic from soil and microbial activity in bulk and rhizosphere soil.•It can be used on any soil type and plant tissue, metabolites extracted from living organisms.

2.
ISME J ; 18(1)2024 Jan 08.
Article de Anglais | MEDLINE | ID: mdl-39105276

RÉSUMÉ

Soils provide essential ecosystem services and represent the most diverse habitat on Earth. It has been suggested that the presence of various physico-chemically heterogeneous microhabitats supports the enormous diversity of microbial communities in soil. However, little is known about the relationship between microbial communities and their immediate environment at the micro- to millimetre scale. In this study, we examined whether bacteria, archaea, and fungi organize into distinct communities in individual 2-mm-sized soil aggregates and compared them to communities of homogenized bulk soil samples. Furthermore, we investigated their relationship to their local environment by concomitantly determining microbial community structure and physico-chemical properties from the same individual aggregates. Aggregate communities displayed exceptionally high beta-diversity, with 3-4 aggregates collectively capturing more diversity than their homogenized parent soil core. Up to 20%-30% of ASVs (particularly rare ones) were unique to individual aggregates selected within a few centimetres. Aggregates and bulk soil samples showed partly different dominant phyla, indicating that taxa that are potentially driving biogeochemical processes at the small scale may not be recognized when analysing larger soil volumes. Microbial community composition and richness of individual aggregates were closely related to aggregate-specific carbon and nitrogen content, carbon stable-isotope composition, and soil moisture, indicating that aggregates provide a stable environment for sufficient time to allow co-development of communities and their environment. We conclude that the soil microbiome is a metacommunity of variable subcommunities. Our study highlights the necessity to study small, spatially coherent soil samples to better understand controls of community structure and community-mediated processes in soils.


Sujet(s)
Archéobactéries , Bactéries , Champignons , Microbiote , Microbiologie du sol , Sol , Bactéries/classification , Bactéries/isolement et purification , Bactéries/génétique , Sol/composition chimique , Champignons/classification , Champignons/isolement et purification , Champignons/génétique , Archéobactéries/classification , Archéobactéries/isolement et purification , Biodiversité , Carbone/analyse , Carbone/métabolisme , Azote/analyse
3.
Biosensors (Basel) ; 14(6)2024 Jun 18.
Article de Anglais | MEDLINE | ID: mdl-38920614

RÉSUMÉ

Heavy metals constitute pollutants that are particularly common in air, water, and soil. They are present in both urban and rural environments, on land, and in marine ecosystems, where they cause serious environmental problems since they do not degrade easily, remain almost unchanged for long periods, and bioaccumulate. The detection and especially the quantification of metals require a systematic process. Regular monitoring is necessary because of seasonal variations in metal levels. Consequently, there is a significant need for rapid and low-cost metal determination methods. In this study, we compare and analytically validate absorption spectrometry with a sensitive voltammetric method, which uses a bismuth film-plated electrode surface and applies stripping voltammetry. Atomic absorption spectroscopy (AAS) represents a well-established analytical technique, while the applicability of anodic stripping voltammetry (ASV) in complicated sample matrices such as soil samples is currently unknown. This sample-handling challenge is investigated in the present study. The results show that the AAS and ASV methods were satisfactorily correlated and showed that the metal concentration in soils was lower than the limit values but with an increasing trend. Therefore, continuous monitoring of metal levels in the urban complex of a city is necessary and a matter of great importance. The limits of detection of cadmium (Cd) were lower when using the stripping voltammetry (SWASV) graphite furnace technique compared with those obtained with AAS when using the graphite furnace. However, when using flame atomic absorption spectroscopy (flame-AAS), the measurements tended to overestimate the concentration of Cd compared with the values found using SWASV. This highlights the differences in sensitivity and accuracy between these analytical methods for detecting Cd. The SWASV method has the advantage of being cheaper and faster, enabling the simultaneous determination of heavy elements across the range of concentrations that these elements can occur in Mediterranean soils. Additionally, a dsDNA biosensor is suggested for the discrimination of Cu(I) along with Cu(II) based on the oxidation peak of guanine, and adenine residues can be applied in the redox speciation analysis of copper in soil, which represents an issue of great importance.


Sujet(s)
Bismuth , ADN , Électrodes , Métaux lourds , Sol , Bismuth/composition chimique , Bismuth/analyse , Métaux lourds/analyse , Sol/composition chimique , Techniques de biocapteur , Polluants du sol/analyse , Techniques électrochimiques , Spectrophotométrie atomique , Cadmium/analyse
4.
Environ Pollut ; 356: 124350, 2024 Sep 01.
Article de Anglais | MEDLINE | ID: mdl-38857841

RÉSUMÉ

From 1954 to 1983, a vermiculite processing facility operated near the Honolulu airport and processed raw material from the Libby, Montana mine, which is now well known for the high asbestos content of its clay deposits. The factory was closed in 1983 due to health hazard concerns, and remediation was performed in 2001 as part of the Libby mine superfund project. However, because of close proximity of the closed-down facility to residential areas of metropolitan Honolulu, some concerns remain regarding the possible environmental persistence of the harmful contaminant. To assess the dispersion of asbestos-contaminated vermiculite and explore the impact of trade winds on its distribution, air samples, and soil samples were collected from multiple locations near the former vermiculite plant. Polarized light microscopy was employed to identify elongated minerals, including potential asbestos. Quantitative mineralogical analysis utilizing X-ray powder diffraction and Rietveld refinement revealed an average content of approximately 7% vermiculite and 4% tremolite at the site. The asbestiform nature of tremolite was confirmed through X-ray micro-diffraction. Detailed analysis of airborne samples using transmission electron microscopy revealed no detectable levels of asbestos fibers in the vicinity of the former processing facilities, but the possibility of asbestos fibers becoming airborne due to mechanical disturbance during dry weather cannot be ruled out.


Sujet(s)
Silicates d'aluminium , Amiante , Surveillance de l'environnement , Mine , Polluants du sol , Sol , Hawaï , Polluants du sol/analyse , Amiante/analyse , Sol/composition chimique , Amiante amphibole
5.
Water Res ; 258: 121788, 2024 Jul 01.
Article de Anglais | MEDLINE | ID: mdl-38810599

RÉSUMÉ

While waters might be contaminated by oocysts from >40 Cryptosporidium species, only viable oocysts of C. parvum and C. hominis truly pose the main health risk to the immunocompetent population. Oocyst viability is also an important but often neglected risk factor in monitoring waterborne parasites. However, commonly used methods in water monitoring and surveys cannot distinguish species (microscopic observation) or oocyst viability (PCR), as dead oocysts in water could retain gross structure and DNA content for weeks to months. Here, we report new TaqMan qRT-PCR/qPCR assays for quantitative detection of viable C. parvum and C. hominis oocysts. By targeting a hypothetical protein-encoding gene cgd6_3920 that is highly expressed in oocysts and variable between species, the qRT-PCR/qPCR assays achieve excellent analytical specificity and sensitivity (limit of quantification [LOQ] = 0.25 and 1.0 oocyst/reaction). Using calibration curves, the number and ratio of viable oocysts in specimens could be calculated. Additionally, we also establish a TaqMan-18S qPCR for cost-effective screening of pan-Cryptosporidium-positive specimens (LOQ = 0.1 oocyst/reaction). The assay feasibility is validated using field water (N = 43) and soil (79) specimens from 17 locations in Changchun, China, which detects four Cryptosporidium species from seven locations, including three gp60-subtypes (i.e., IIdA19G1, IIdA17G1 and IIdA24G2) of C. parvum oocysts showing varied viability ratios. These new TaqMan q(RT)-PCR assays supplement current methods in the survey of waters and other samples (e.g., surfaces, foods and beverages), and are applicable to assessing the efficiency of oocyst deactivation protocols.


Sujet(s)
Cryptosporidium parvum , Cryptosporidium , Oocystes , Cryptosporidium/génétique , Facteurs de risque , Santé publique , Réaction de polymérisation en chaine en temps réel/méthodes
6.
Spectrochim Acta A Mol Biomol Spectrosc ; 318: 124526, 2024 Oct 05.
Article de Anglais | MEDLINE | ID: mdl-38810434

RÉSUMÉ

Petroleum hydrocarbon (PHC) contamination in soils is considered one of the most serious problems currently, of which the detection and identification is a fairly significant but challenging work. Conventional methods to do such work usually need complex sample pretreatment, consume much time and fail to do the in-situ detection. This paper set out to create a novel systematic methodology to realize the goals accurately and efficiently. Based on laser-induced breakdown spectroscopy (LIBS) and self-improved machine learning methods, the innovative methodology only uses extremely simple devices to do the real-time in situ detection and identification work and even realize the quantitative analysis of pollution level accurately. In the study, clean soils mixed with petroleum were served as polluted samples, clean soils to be the blank group for comparison. Based on the elemental information from the spectra obtained by LIBS, machine learning methods were improved and helped optimized the algorithm to identify the PHC polluted soil samples for the first time. Furthermore, a novel model was designed to perform the quantitative analysis of the concentration of PHC pollution in soils, which can be applied to detect the degree of PHC contamination in soils accurately. Finally, the harmful volatile component of the PHC polluted soils was also successfully and identified despite its extremely minimal content in the air. The newly-designed methodology is novel and efficient, which has extensive application prospect in the real-time in situ detection of petroleum hydrocarbon pollution.

7.
Int J Syst Evol Microbiol ; 73(10)2023 Oct.
Article de Anglais | MEDLINE | ID: mdl-37906507

RÉSUMÉ

Two Gram-stain-negative, non-spore-forming, rod-shaped, and obligately aerobic bacteria, designated strains CX-624T and cx-311, were isolated from soil samples in Qinghai Province, China. The two strains grew best at 28 °C on the plate with Tryptone soya agar (TSA). Cells formed circular, convex, translucent, smooth, and orange colonies with approximately 1.0 mm diameter after 2 days of incubation on TSA at 28 °C. The strains were oxidase-negative and catalase-positive. The predominant cellular fatty acids were iso-C15 : 0 and anteiso-C15 : 0, and major polar lipids included phosphatidylethanolamine, an unidentified aminophospholipid, four unidentified lipids and an aminolipid. MK-6 was the sole menaquinone in strain CX-624T. Comparative analysis of the nearly full-length 16S rRNA gene sequences showed strains CX-624T and cx-311 were member of the family Weeksellaceae, with the highest similarity to Kaistella haifensis H38T (96.66 %), Epilithonimonas pallida DSM 18015T (96.59 %), and Chryseobacterium gambrini DSM 18014T (96.53 %). Both phylogenetic analysis of the 16S rRNA gene and 177 core genes revealed that strains CX-624T and cx-311 formed an independent clade. Average nucleotide identity values (< 72.64 %), average amino-acid identity values (<72.61 %) and digital DNA-DNA hybridization (< 21.10 %) indicated that the strains CX-624T and cx-311 should constitute a novel genus. The DNA G+C contents of strains CX-624T and cx-311 were 43.0 mol% and 42.7 mol%. According to the data obtained in this study, strain CX-624T represents a novel species belonging to a novel genus of the Weeksellaceae, for which the name Marnyiella aurantia gen. nov., sp. nov. is proposed. The type strain is CX-624T (=GDMCC 1.1714T = JCM 33925T).


Sujet(s)
Acides gras , Flavobacteriaceae , Acides gras/composition chimique , Phylogenèse , ARN ribosomique 16S/génétique , ADN bactérien/génétique , Composition en bases nucléiques , Techniques de typage bactérien , Analyse de séquence d'ADN , Vitamine K2
8.
Environ Geochem Health ; 45(12): 9745-9756, 2023 Dec.
Article de Anglais | MEDLINE | ID: mdl-37838635

RÉSUMÉ

A total of 16 polycyclic aromatic hydrocarbons (PAHs) were measured in 28 soil column samples from two contaminated industrial sites in Eastern China. The total concentration of 16 PAHs (∑PAHs) in the surface soil (0-20 cm) was measured up to 52,600 ng/g (dry weight basis) with a remarkable spatial difference in the studied contaminated sites. The concentrations of the ∑PAHs in soils decreased with the increase in soil depth (0-10 m). The surface and subsurface soil presented a tenfold higher concentration than the soil with depth greater than 4 m. Additionally, the vertical migration tendency of the PAHs was found to be correlated significantly with their hydrophobicity (R2 = 0.79, P < 0.01). Naphthalene (with lowest octanol-water partition coefficient among the studied PAHs) showed the greatest average soil depth at which its peak concentration occurred. Furthermore, risk quotient analysis by using benzo[a]pyrene as reference compound showed that 71.4% of the samples exhibited high ecological risk for soil. Moreover, the total carcinogenic risk of the PAHs in the surface soil samples was assessed at 5.61 × 10-5-1.28 × 10-4 and 4.41 × 10-6-9.43 × 10-5 for male and female workers, respectively, in which 67.9%-71.4% of the samples showed potential risk. Generally, these results suggest a further consideration of ecological and health risks associated with PAHs in contaminated sites in Eastern China.


Sujet(s)
Hydrocarbures aromatiques polycycliques , Polluants du sol , Humains , Femelle , Mâle , Hydrocarbures aromatiques polycycliques/toxicité , Hydrocarbures aromatiques polycycliques/analyse , Sol , Surveillance de l'environnement , Polluants du sol/toxicité , Polluants du sol/analyse , Chine , Appréciation des risques
9.
Entropy (Basel) ; 25(10)2023 Oct 19.
Article de Anglais | MEDLINE | ID: mdl-37895586

RÉSUMÉ

The conversion of native forest into agricultural land, which is common in many parts of the world, poses important questions regarding soil degradation, demanding further efforts to better understand the effect of land use change on soil functions. With the advent of 3D computed tomography techniques and computing power, new methods are becoming available to address this question. In this direction, in the current work we implement a modification of the Fisher-Shannon method, borrowed from information theory, to quantify the complexity of twelve 3D CT soil samples from a sugarcane plantation and twelve samples from a nearby native Atlantic forest in northeastern Brazil. The distinction found between the samples from the sugar plantation and the Atlantic forest site is quite pronounced. The results at the level of 91.7% accuracy were obtained considering the complexity in the Fisher-Shannon plane. Atlantic forest samples are found to be generally more complex than those from the sugar plantation.

10.
Bull Environ Contam Toxicol ; 111(2): 17, 2023 Jul 18.
Article de Anglais | MEDLINE | ID: mdl-37462832

RÉSUMÉ

A comprehensive study from the surface soil samples of 14 locations from Amghara, Kuwait were assessed for the investigation of organochlorine pesticides (OCPs). There is limited information regarding the distribution pattern of OCPs in the soil samples of Kuwait. The total concentration of OCPs was in the range of 209.39 pg/g -7449.18 pg/g with an average value of 1313.04 pg/g. DDT had higher concentrations in soil samples (969.52 pg/g) than the other pesticides, according to the findings. The distribution pattern of OCPs in the Amghara soils revealed their origin as both historical and recent applications of pesticides. The study extended, how residual quantities could be used to determine health risks of both children and adults. Children and adults in all the locations were subject to negligible cancer risk, according to the health risk evaluation.


Sujet(s)
Hydrocarbures chlorés , Pesticides , Polluants du sol , Adulte , Enfant , Humains , Surveillance de l'environnement , Hydrocarbures chlorés/analyse , Koweït , Pesticides/analyse , Sol , Polluants du sol/analyse
11.
Acta Trop ; 244: 106956, 2023 Aug.
Article de Anglais | MEDLINE | ID: mdl-37244403

RÉSUMÉ

Acanthamoeba spp., Balamuthia mandrillaris, and Naegleria fowleri are pathogenic free-living amoeba (FLA) and are commonly found in the environment, particularly soil. This pathogenic FLA causes central nervous system-affecting granulomatous amebic encephalitis (GAE) or primary amebic meningoencephalitis (PAM) and can also cause keratitis and skin infections. In the present study, we aimed to determine the quantitative concentration of Acanthamoeba spp., B. mandrillaris, and N. fowleri in soil samples collected from places where human contact is high by using a qPCR assay in Izmir, Turkey. A total of 45.71% (n = 16) of Acanthamoeba spp., 20% (n = 7) of B. mandrillaris, and 17.4% (n = 6) of N. fowleri were detected in five different soil sources by the qPCR assay. The quantitative concentration of Acanthamoeba spp., B. mandrillaris, and N. fowleri in various soil sources was calculated at 10 × 105 - 6 × 102, 47 × 104 to 39 × 103, and 9 × 103 - 8 × 102 plasmid copies/gr, respectively. While the highest quantitative concentration of Acanthamoeba spp. and B. mandrillaris was determined in garden soil samples, N. fowleri was detected in potting soil samples. Three different genotypes T2 (18.75%), T4 (56.25%), and T5 (25%) were identified from Acanthamoeba-positive soil samples. Acanthamoeba T4 genotype was the most frequently detected genotype from soil samples and is also the most common genotype to cause infection in humans and animals. To the best of our knowledge, the present study is the first study to identify genotype T5 in soil samples from Turkey. In conclusion, people and especially children should be aware of the hidden danger in the garden and potting soil samples that come into contact most frequently. Public health awareness should be raised about human infections that may be encountered due to contact with the soil. Public health specialists should raise awareness about this hidden danger in soil.


Sujet(s)
Acanthamoeba , Amibiase , Amoeba , Balamuthia mandrillaris , Naegleria fowleri , Animaux , Enfant , Humains , Acanthamoeba/génétique , Naegleria fowleri/génétique , Balamuthia mandrillaris/génétique , Réaction de polymérisation en chaine en temps réel , Sol , Turquie
12.
Heliyon ; 9(4): e15256, 2023 Apr.
Article de Anglais | MEDLINE | ID: mdl-37095930

RÉSUMÉ

Bacteria residing in contaminated waste soil degrade and utilize organic and inorganic material as a source of nutrients as well as reduce environmental contamination through their enzymatic machinery. This enzymatic potential of indigenous bacteria can be exploited at industrial level through detailed screening, characterization, optimization and purification. In present study, diversity and enzymatic potential of indigenous bacteria was investigated through qualitative and quantitative screening methods from unexplored contaminated soil waste sites in Faisalabad. Shannon diversity (H') index revealed that twenty-eight soil samples from four contaminated sites were highly diverse of amylase, protease and lipase producing bacteria. Maximum protease producing bacteria were detected in fruit waste (1.929 × 107), whereas amylase and lipase producing bacteria were found in industrial (1.475 × 107) and (5.38 × 106), in household waste soil samples. Most of the indigenous bacterial isolates showed potential for multiple enzymes. An isolate OC5 exhibited capability for amylase production and optimization at a wider range of cultural conditions; pH (6-8), temperature (25 °C, 37 °C, 45 °C), incubation time (24-72 h), and NaCl concentrations 0.5-13%, using (1%) starch and lactose as substrates. An isolate OC5 was identified by molecular identification and phylogenetic analysis showed 99% sequence similarity with Bacillus spp. ANOVA was used to analyzed all data statistically. This study enhances the importance of initial screening and reporting of industrially potent indigenous bacteria from unexplored contaminated waste soils. In future, indigenous bacteria in contaminated wastes may be good candidates to solve various environmental pollution problems.

13.
MethodsX ; 10: 102133, 2023.
Article de Anglais | MEDLINE | ID: mdl-36970031

RÉSUMÉ

The methodology described here presents the procedures for determining physical soil properties of undisturbed soil samples. Besides describing the methods for determining bulk and particle density, moisture content and porosity of the soil in detail, it also offers a way of determining soil's water holding properties when there is no pressure membrane apparatus available. This method is based on a capillary water saturation experiment and gravimetric measurements performed in different time intervals after the saturation (30 minutes, 2 hours, and 24 hours). With a few, simple to follow steps, and not using complicated and space-consuming equipment, it can be replicated in almost any laboratory, and the results are easily interpreted. The method was, and still is, widely used in the Czech Republic, and some parts of it are used as standard soil testing methods. To a lesser or greater detail, this method is described in Rejsek (1999), Valla et al. (2011), Pospísilová et al. (2016) and ÚKZÚZ (2016), and this methodology is compiled from those publications, mainly focusing (and using the same abbreviations) on the procedures described by Valla et al. (2011). The methodology described does not essentially differ from the original, but the steps here have been described to a greater detail, based on the practical experiences obtained over the years, in order to make some common mistakes less likely to happen. The methodology is further complemented with graphical illustrations for each step described in the process, making it clearer, more easily understood, and easier to replicate. Since this methodology has not been available in English so far, this guide offers a great opportunity of its replication on an international level.•Simple, cost-effective and environmentally friendly method for determining physical soil properties•Easy replication and results interpretation•Results can be obtained even in non-highly specialized soil laboratories.

14.
Lett Appl Microbiol ; 76(3)2023 Mar 01.
Article de Anglais | MEDLINE | ID: mdl-36841234

RÉSUMÉ

Coxiella burnetii, the causative agent of Q fever, is a small, coccoid, Gram-negative strict intracellular pathogen. One of the most common ways of acquiring Q fever is through inhalation of aerosols containing the bacteria. Because C. burnetii is highly infectious, spreads easily through the air, and is very resistant to environmental conditions, it is considered a biological threat. This paper presents the development and validation of a specific real-time polymerase chain reaction (real-time PCR or qPCR) assay for the detection of C. burnetii, based on the amplification of a fragment of the isocitrate dehydrogenase (icd) encoding gene. This real-time PCR is highly specific, reproducible, and sensitive, allowing the detection of as few as 5 genome equivalents (GEs) of C. burnetii per reaction. The method enables a rapid preliminary differentiation among strains, based on a point mutation at nucleotide 745 of the icd gene. The assay was successfully evaluated in environmental soil samples; a limit of detection of 3 × 104 colony forming units per 0.5 g of soil (∼3 GEs per reaction) was achieved. The newly developed real-time PCR offers a valuable tool for differential detection of C. burnetii strains in environmental soil samples.


Sujet(s)
Coxiella burnetii , Fièvre Q , Humains , Coxiella burnetii/génétique , Réaction de polymérisation en chaine en temps réel , Fièvre Q/diagnostic , Fièvre Q/microbiologie , Dosage biologique
15.
Appl Radiat Isot ; 194: 110676, 2023 Apr.
Article de Anglais | MEDLINE | ID: mdl-36709607

RÉSUMÉ

The ISO/IEC 17025 standard requires that all significant contributions have to be propagated to the measurement uncertainty, including also sampling uncertainties. We evaluated soil sampling uncertainties for gamma-ray spectrometry by using in-house and split-sample methods. By in-house method, the sampling uncertainty was determined by comparing standard deviations of measurement results and average analytical uncertainty. With split-sample method, it was calculated using between-sample and between-analysis variances. If analytical uncertainty is reliably determined, the in-house method is recommended because fewer measurements are needed.

16.
Environ Monit Assess ; 194(10): 789, 2022 Sep 14.
Article de Anglais | MEDLINE | ID: mdl-36104633

RÉSUMÉ

Large area sampling approaches have been developed and implemented by the US Environmental Protection Agency (EPA) to increase sample sizes, and potentially representativeness, in outdoor urban environments (e.g., concrete, asphalt, grass/landscaping). These sampling approaches could be implemented in response to an outdoor biological contamination incident or bioterrorism attack to determine the extent of contamination and for clearance following remediation. However, sample collection over large areas often contains an extensive amount of co-collected debris and native background microorganisms that interfere with the detection of biological threat agents. Sample processing methods that utilize basic laboratory equipment amenable to field deployment were selected and applied to turbid aqueous samples (TAS) to reduce particulates and native environmental organisms prior to culture and rapid viability-polymerase chain reaction (RV-PCR) analytical methods. Bacillus anthracis Sterne (BaS) spores were spiked into TAS collected by soil grab, wet vacuum collection from an outdoor concrete surface, or storm water runoff from an urban parking lot. The implementation of a sample processing method improved the sensitivity of culture and RV-PCR analytical methods for BaS spore detection in soil and wet vacuum TAS samples compared to baseline (minimal to no field processing methods applied). For soil, when the processing method was applied, samples with 15 colony forming units (CFU)/ml (60 CFU/g) and 1.5 CFU/mL (6 CFU/g) BaS spore load were detected using culture and RV-PCR, respectively. Most notably, the processing methods greatly improved the sensitivity of the RV-PCR analytical method for the wet vacuum TAS from no detection at the 1500 CFU/mL BaS spore load level to as low as 1.5 CFU/mL BaS spore load.


Sujet(s)
Bacillus anthracis , Bacillus anthracis/physiologie , Surveillance de l'environnement/méthodes , Sol , Manipulation d'échantillons , Spores bactériens , États-Unis
17.
Appl Radiat Isot ; 186: 110303, 2022 Aug.
Article de Anglais | MEDLINE | ID: mdl-35649293

RÉSUMÉ

The prompt gamma-ray neutron activation analysis (PGNAA) is a significant technique for determining the quantities of a variety of elements in natural materials, whether online or in situ, regardless of their chemical compounds. This study focused on evaluating the performance of a portable PGNAA setup based on a Genie 16 DD neutron generator to determine the minimum detectable concentration (MDC) of nickel in soil samples. Two separate reaction mechanisms were used to activate the samples. A CeBr3 detector was used to detect nickel gamma rays at 1331 and 1454 keV caused by neutron inelastic scattering, as well as those at 8553 and 8998 keV emitted following thermal neutron capture activations. The obtained MDC values for both reaction channels have improved as a result of the research.


Sujet(s)
Neutrons , Nickel , Rayons gamma , Analyse par activation neutronique , Sol
18.
Saudi J Biol Sci ; 29(4): 3023-3032, 2022 Apr.
Article de Anglais | MEDLINE | ID: mdl-35531212

RÉSUMÉ

Knowledge of soil weed seed bank is important for population dynamics studied, establishment of appropriate weed management programs, a little effort in understanding weed seed bank can give valuable information about what weeds to expect in growing season, weed density, and when most weed germination will take place. In this study, a two - year's, two sites were carried out with the aim of assessing weed seed bank status of the soil throughout 2018 and 2019. A site was worked out in Sakha Agriculture Research farm act as a clay soil, Kafr El-Sheikh Governorate, Agriculture Research Center (ARC). Another site was worked out in El-Ismailia Agr; Res; farm act as sandy soil, El-Ismailia Governorate, ARC. At each site, soil samples were selected from nine different places as like three Zigzag shapes divided into three, six and nine sites, "W" to act the whole soil area (30 faddan in Sakha farm, and 15 faddan in El-Ismailia farm). The soil samples were taken from topsoil 0-10 cm depth with an auger (core) 10 cm diameter the soils without tillage and before sowing the summer crop. The result of present the study in two different stations and soils, revealed that the number of soil samples to estimate weed seed banks should be either six or nine sites; each sample weighted 0.50 Kg soil with zigzag shape act a direct seed extraction technique to able recognize the abundance of weed species into the soil and their seed density. The aim is to improve integrated weed control.

19.
Chemosphere ; 294: 133653, 2022 May.
Article de Anglais | MEDLINE | ID: mdl-35051522

RÉSUMÉ

Tire wear (TW) constitutes a significant source of microplastic in terrestrial ecosystems. It is known that particles emitted by roads can have an effect up to 100 m into adjacent areas. Here, we apply for the first-time thermal extraction desorption gas chromatography-mass spectrometry (TED-GC/MS) to determine TW in soil samples by detection of thermal decomposition products of styrene-butadiene rubber (SBR), without additional enrichment. Additionally, zinc contents were determined as an elemental marker for TW. Mixed soil samples were taken along three transects along a German motorway in 0.3, 2.0, and 5.0 m distance from the road. Sampling depths were 0-2, 2-5, 5-10, and 10-20 cm. Four fine fractions, 1 000-500, 500-100, 100-50, and <50 µm, were analyzed. TW contents based on SBR ranged from 155 to 15 898 mg kg-1. TW contents based on zinc were between 413 and 44 812 mg kg-1. Comparison of individual values of SBR and zinc reveals SBR as a more specific marker. Results confirm that most TW ends up in the topsoil within a 2 m distance. The sampling strategy resulted in representative data for a larger area. Standard deviations of quadruple TED-GC/MS determination of SBR were <10% for all grain size fractions. TED-GC/MS is a suitable analytical tool for determining TW in soil samples without the use of toxic chemicals, enrichment, or special sample preparation.


Sujet(s)
Matières plastiques , Sol , Écosystème , Chromatographie gazeuse-spectrométrie de masse , Microplastiques
20.
Environ Sci Pollut Res Int ; 29(14): 21023-21033, 2022 Mar.
Article de Anglais | MEDLINE | ID: mdl-34748180

RÉSUMÉ

The distribution of soil pollutants is receiving increasing attention. The accurate determination of the soil pollution distribution in an area is becoming more important. To date, many soil quality surveys have already been carried out in China, and the use of these surveys to reflect soil pollution is worth examining. This article provides an example of the application of combined two-phase data to assess soil contamination in a region. Based on data acquired during two soil sampling phases in 2005 and 2015, we chose a typical watershed in southeast China as the study area. We analysed the data using spatial interpolation analysis, compared the results, and extracted points to perform point combination based on site conditions. Ultimately, these analyses allowed us to develop a new method involving the use of multi-period data to evaluate the soil quality on a regional scale. In the ten years from 2005 to 2015, apparent changes in soil pollution occurred. We found that the area with no change in soil pollution accounts for 46.98% of the total basin and the area demonstrating a soil pollution increase accounts for 47.25% of the total basin, while the area exhibiting a soil pollution reduction only accounts for 5.78% of the whole area. The average accuracy of the combined points increased to 89% from 76 and 81%. The analysis of the land-use types and spatial locations during the two periods revealed no direct relationship between the soil contamination changes and the changes in the total number of land-use types, but a correlation was observed with the intensity of human activities at the spatial locations. This paper proposes a new method for the spatial assessment of soil pollution based using multiple periods of existing data on the above analysis.


Sujet(s)
Polluants du sol , Sol , Chine , Surveillance de l'environnement , Pollution de l'environnement/analyse , Humains , Polluants du sol/analyse , Analyse spatiale
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