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1.
Nucleic Acids Res ; 49(7): 3888-3906, 2021 04 19.
Article de Anglais | MEDLINE | ID: mdl-33693789

RÉSUMÉ

Ultraviolet (UV) induces pyrimidine dimers (PDs) in DNA and replication-dependent fragmentation in chromosomes. The rnhAB mutants in Escherichia coli, accumulating R-loops and single DNA-rNs, are generally resistant to DNA damage, but are surprisingly UV-sensitive, even though they remove PDs normally, suggesting irreparable chromosome lesions. We show here that the RNase H defect does not cause additional chromosome fragmentation after UV, but inhibits DNA synthesis after replication restart. Genetic analysis implies formation of R-loop-anchored transcription elongation complexes (R-loop-aTECs) in UV-irradiated rnhAB mutants, predicting that their chromosomal DNA will accumulate: (i) RNA:DNA hybrids; (ii) a few slow-to-remove PDs. We confirm both features and also find that both, surprisingly, depend on replication restart. Finally, enriching for the UV-induced RNA:DNA hybrids in the rnhAB uvrA mutants also co-enriches for PDs, showing their co-residence in the same structures. We propose that PD-triggered R-loop-aTECs block head-on replication in RNase H-deficient mutants.


Sujet(s)
Altération de l'ADN , Réplication de l'ADN , ADN bactérien , Escherichia coli/génétique , Dimères de pyrimidine/composition chimique , ADN bactérien/composition chimique , ADN bactérien/effets des radiations , Hybridation d'acides nucléiques , Ribonuclease H/génétique , Rayons ultraviolets/effets indésirables
2.
Cell Mol Biol (Noisy-le-grand) ; 66(7): 51-55, 2020 Oct 31.
Article de Anglais | MEDLINE | ID: mdl-33287922

RÉSUMÉ

Ciprofloxacin hydrochloride and Norfloxacin are second-generation fluoroquinolone antibiotic against bacterial DNA gyrase, which reduces DNA strain throughout replication. As DNA gyrase is essential through DNA replication, subsequent DNA synthesis and cell division are inhibited. Direct photolysis of fluoroquinolones was studied by using UV irradiation in the presence or absence of other substances that generate free radicals. This study aimed to assess the effect of Ultraviolet B (UVB) irradiation in removing ciprofloxacin and norfloxacin by using a simulating model of wastewater contained urea at pH 4. A known concentration of ciprofloxacin and norfloxacin were prepared in an appropriate aqueous solution in presence or absence 0.2M urea and adjusted at pH 4. The dis-solved drugs were irradiated with UVB-lamp in a dark place for 60 minutes. The percent of removal and the rate of elimination (k) of each drug were calculated. The direct photolysis effect of UVB irradiation was observed with ciprofloxacin which amounted to 24.4% removal compared with12.4% removal of norfloxacin after 60 minutes of irradiation. The effect of UVB irradiation was enhanced by urea to reach 38.9% and 15% for ciprofloxacin and norfloxacin. The calculated k of ciprofloxacin has amounted to three folds of that of norfloxacin. Direct photolysis of ciprofloxacin and norfloxacin can be achieved simply by using a simulation model of 0.2 M urea and UVB irradiation at pH 4. UVB is highly effective in removing ciprofloxacin compared with norfloxacin by 2-3 folds.


Sujet(s)
Division cellulaire/effets des médicaments et des substances chimiques , Ciprofloxacine/pharmacologie , Réplication de l'ADN/effets des médicaments et des substances chimiques , ADN bactérien/effets des médicaments et des substances chimiques , Norfloxacine/pharmacologie , Rayons ultraviolets , Urée/composition chimique , Division cellulaire/effets des radiations , Ciprofloxacine/effets des radiations , Milieux de culture , Réplication de l'ADN/effets des radiations , ADN bactérien/effets des radiations , Norfloxacine/effets des radiations , Analyse de régression
3.
Nat Commun ; 11(1): 1477, 2020 03 20.
Article de Anglais | MEDLINE | ID: mdl-32198385

RÉSUMÉ

In the model organism Escherichia coli, helix distorting lesions are recognized by the UvrAB damage surveillance complex in the global genomic nucleotide excision repair pathway (GGR). Alternately, during transcription-coupled repair (TCR), UvrA is recruited to Mfd at sites of RNA polymerases stalled by lesions. Ultimately, damage recognition is mediated by UvrA, followed by verification by UvrB. Here we characterize the differences in the kinetics of interactions of UvrA with Mfd and UvrB by following functional, fluorescently tagged UvrA molecules in live TCR-deficient or wild-type cells. The lifetimes of UvrA in Mfd-dependent or Mfd-independent interactions in the absence of exogenous DNA damage are comparable in live cells, and are governed by UvrB. Upon UV irradiation, the lifetimes of UvrA strongly depended on, and matched those of Mfd. Overall, we illustrate a non-perturbative, imaging-based approach to quantify the kinetic signatures of damage recognition enzymes participating in multiple pathways in cells.


Sujet(s)
Altération de l'ADN/physiologie , Réparation de l'ADN/physiologie , ADN bactérien/métabolisme , Escherichia coli/métabolisme , Imagerie optique/méthodes , Cellules procaryotes/métabolisme , Adenosine triphosphatases/génétique , Adenosine triphosphatases/métabolisme , Biophysique , Altération de l'ADN/effets des radiations , Helicase/génétique , Helicase/métabolisme , Enzymes de réparation de l'ADN , ADN bactérien/effets des radiations , Protéines de liaison à l'ADN/génétique , Protéines de liaison à l'ADN/métabolisme , DNA-directed RNA polymerases/métabolisme , Escherichia coli/génétique , Protéines Escherichia coli/génétique , Protéines Escherichia coli/métabolisme , Cinétique , Facteurs de transcription/métabolisme , Rayons ultraviolets
4.
J Hazard Mater ; 394: 122535, 2020 07 15.
Article de Anglais | MEDLINE | ID: mdl-32213383

RÉSUMÉ

Antibiotic resistance genes (ARGs) have been detected in the atmosphere. Airborne ARGs transmission threatens human health. In the present study, we investigated the release and degradation of airborne ARGs from Escherichia coli bioaerosol through microwave (MW) irradiation. In this study, a new MW absorbing material (Fe3O4@SiC ceramic foam) that contributed to its stronger MW absorption is presented. When the MW input energy density was 7.4 × 103 kJ/m3, the concentration of airborne Escherichia coli decreased by 4.4 log. Different DNA forms were found in the air because MW irradiation ruptured cell membranes. The bound particles provide more protection for bound DNA in the degradation process than free DNA. After the self-degradation of the released airborne free ARGs, some of them would remain and continue to spread in the atmosphere. The released airborne free ARGs cannot be ignored. Total ARGs concentrations decrease rapidly with increased temperature. The inactivation rate constant of ARGs through MW irradiation is higher than that through the Fenton and UV, however, the energy efficiency per order of MW irradiation is lower. Therefore, MW irradiation with Fe3O4@SiC ceramic foam could efficiently degrade the distribution of ARGs in the atmosphere.


Sujet(s)
Composés inorganiques du carbone/composition chimique , Céramiques/composition chimique , Résistance bactérienne aux médicaments/génétique , Escherichia coli/effets des radiations , Oxyde ferrosoferrique/composition chimique , Gènes bactériens/effets des radiations , Composés du silicium/composition chimique , Aérosols/composition chimique , Aérosols/effets des radiations , Composés inorganiques du carbone/effets des radiations , Céramiques/effets des radiations , ADN bactérien/composition chimique , ADN bactérien/effets des radiations , Escherichia coli/composition chimique , Escherichia coli/génétique , Oxyde ferrosoferrique/effets des radiations , Micro-ondes , Pyrolyse , Composés du silicium/effets des radiations , Température
5.
PLoS One ; 14(12): e0225475, 2019.
Article de Anglais | MEDLINE | ID: mdl-31790434

RÉSUMÉ

Rapid sample preparation is one of the leading bottlenecks to low-cost and efficient sample component detection. To overcome this setback, a technology known as Lyse-It has been developed to rapidly (less than 60 seconds) lyse Gram-positive and-negative bacteria alike, while simultaneously fragmenting DNA/RNA and proteins into tunable sizes. This technology has been used with a variety of organisms, but the underlying mechanism behind how the technology actually works to fragment DNA/RNA and proteins has hitherto been studied. It is generally understood how temperature affects cellular lysing, but for DNA/RNA and protein degradation, the temperature and amount of energy introduced by microwave irradiation of the sample, cannot explain the degradation of the biomolecules to the extent that was being observed. Thus, an investigation into the microwave generation of reactive oxygen species, in particular singlet oxygen, hydroxyl radicals, and superoxide anion radicals, was undertaken. Herein, we probe one aspect, the generation of reactive oxygen species (ROS), which is thought to contribute to a non-thermal mechanism behind biomolecule fragmentation with the Lyse-It technology. By utilizing off/on (Photoinduced electron transfer) PET fluorescent-based probes highly specific for reactive oxygen species, it was found that as oxygen concentration in the sample and/or microwave irradiation power increases, more reactive oxygen species are generated and ultimately, more oxidation and biomolecule fragmentation occurs within the microwave cavity.


Sujet(s)
Méthodes de préparation d'échantillons analytiques/méthodes , Techniques bactériologiques/méthodes , Fragmentation de l'ADN/effets des médicaments et des substances chimiques , Détergents/pharmacologie , Stabilité de l'ARN/effets des médicaments et des substances chimiques , Fragmentation de l'ADN/effets des radiations , ADN bactérien/composition chimique , ADN bactérien/effets des médicaments et des substances chimiques , ADN bactérien/effets des radiations , Hydrolyse/effets des radiations , Listeria monocytogenes/effets des médicaments et des substances chimiques , Listeria monocytogenes/génétique , Listeria monocytogenes/effets des radiations , Micro-ondes , Oxydoréduction/effets des médicaments et des substances chimiques , Oxydoréduction/effets des radiations , Oxygène/analyse , Oxygène/métabolisme , Protéolyse/effets des médicaments et des substances chimiques , Protéolyse/effets des radiations , Stabilité de l'ARN/effets des radiations , ARN bactérien/composition chimique , ARN bactérien/effets des médicaments et des substances chimiques , ARN bactérien/effets des radiations , Espèces réactives de l'oxygène/analyse , Espèces réactives de l'oxygène/métabolisme , Staphylococcus aureus/effets des médicaments et des substances chimiques , Staphylococcus aureus/génétique , Staphylococcus aureus/effets des radiations , Température , Facteurs temps , Vibrio cholerae/effets des médicaments et des substances chimiques , Vibrio cholerae/génétique , Vibrio cholerae/effets des radiations
6.
DNA Repair (Amst) ; 80: 36-44, 2019 08.
Article de Anglais | MEDLINE | ID: mdl-31247470

RÉSUMÉ

RAre DAmage and Repair sequencing (RADAR-seq) is a highly adaptable sequencing method that enables the identification and detection of rare DNA damage events for a wide variety of DNA lesions at single-molecule resolution on a genome-wide scale. In RADAR-seq, DNA lesions are replaced with a patch of modified bases that can be directly detected by Pacific Biosciences Single Molecule Real-Time (SMRT) sequencing. RADAR-seq enables dynamic detection over a wide range of DNA damage frequencies, including low physiological levels. Furthermore, without the need for DNA amplification and enrichment steps, RADAR-seq provides sequencing coverage of damaged and undamaged DNA across an entire genome. Here, we use RADAR-seq to measure the frequency and map the location of ribonucleotides in wild-type and RNaseH2-deficient E. coli and Thermococcus kodakarensis strains. Additionally, by tracking ribonucleotides incorporated during in vivo lagging strand DNA synthesis, we determined the replication initiation point in E. coli, and its relation to the origin of replication (oriC). RADAR-seq was also used to map cyclobutane pyrimidine dimers (CPDs) in Escherichia coli (E. coli) genomic DNA exposed to UV-radiation. On a broader scale, RADAR-seq can be applied to understand formation and repair of DNA damage, the correlation between DNA damage and disease initiation and progression, and complex biological pathways, including DNA replication.


Sujet(s)
Altération de l'ADN , Réparation de l'ADN , Génome d'archéobactérie , Génome bactérien , Tests de mutagénicité/méthodes , Analyse de séquence d'ADN/méthodes , Réplication de l'ADN , ADN des archées , ADN bactérien/effets des radiations , Escherichia coli/génétique , Escherichia coli/effets des radiations , Séquençage nucléotidique à haut débit/méthodes , Dimères de pyrimidine , Ribonucléotides , Thermococcus/génétique , Rayons ultraviolets
7.
PLoS One ; 13(8): e0201448, 2018.
Article de Anglais | MEDLINE | ID: mdl-30102709

RÉSUMÉ

Bacterial spores are one of the most resilient life forms on earth and are involved in many human diseases, such as infectious diarrhea, fatal paralytic illnesses and respiratory infections. Here, we investigated the mechanisms involved in the death of Bacillus pumilus spores after exposure to electric arcs in water. Cutting-edge microscopies at the nanoscale did not reveal any structural disorganization of spores exposed to electric arcs. This result suggested the absence of physical destruction by a propagating shock wave or an exposure to an electric field. However, Pulsed-Field Gel Electrophoresis (PFGE) revealed genomic DNA damage induced by UV radiation and Reactive Oxygen Species (ROS). UV induced single-strand DNA breaks and thymine dimers while ROS were mainly involved in base excision. Our findings revealed a correlation between DNA damage and the treatment of spores with electrical discharges.


Sujet(s)
Altération de l'ADN/effets des radiations , ADN bactérien/effets des radiations , Électricité , Spores bactériens/génétique , Purification de l'eau/méthodes , Bacillus pumilus/génétique , Bacillus pumilus/métabolisme , Bacillus pumilus/effets des radiations , Infections bactériennes/prévention et contrôle , ADN bactérien/génétique , Électrophorèse en champ pulsé , Génome bactérien/génétique , Génome bactérien/effets des radiations , Humains , Espèces réactives de l'oxygène/métabolisme , Espèces réactives de l'oxygène/effets des radiations , Spores bactériens/métabolisme , Spores bactériens/effets des radiations , Rayons ultraviolets , Microbiologie de l'eau
8.
Int J Food Microbiol ; 284: 63-72, 2018 Nov 02.
Article de Anglais | MEDLINE | ID: mdl-30005928

RÉSUMÉ

The effect of pulsed light treatment on the lag phase and the maximum specific growth rate of Listeria innocua was determined in culture media at 7 °C. Fluences of 0.175, 0.350 and 0.525 J/cm2 were tested. The lag phase of the survivors increased as fluence did, showing significant differences for all the doses; an 8.7-fold increase was observed at 0.525 J/cm2. Pulsed light decreased the maximum specific growth rate by 38% at the same fluence. Both parameters were also determined by time-lapse microscopy at 25 °C in survivors to 0.525 J/cm2, with an increase of 13-fold of the lag phase and a 45% decrease of the maximum specific growth rate. The higher the fluence, the higher the variability of both parameters was. To characterize pulsed light damage on L. innocua, the formation of dimers on DNA was assessed, and a proteomic study was undertaken. In cells treated with 0.525 J/cm2, cyclobutane pyrimidine dimers and pyrimidine (6-4) pyrimidone photoproducts were detected at 5:1 ratio. Pulsed light induced the expression of three proteins, among them the general stress protein Ctc. Furthermore, treated cells showed an up-regulation of proteins related to metabolism of nucleotides and fatty acids, as well as with translation processes, whereas flagellin and some glucose metabolism proteins were down-regulated. Differences in the proteome of the survivors could contribute to explain the mechanisms of adaptation of L. innocua after pulsed light treatment.


Sujet(s)
ADN bactérien/effets des radiations , Lumière , Listeria , Protéome/effets des radiations , Flagelline/biosynthèse , Listeria/croissance et développement , Listeria/métabolisme , Listeria/effets des radiations , Protéomique
10.
Chemosphere ; 200: 366-372, 2018 Jun.
Article de Anglais | MEDLINE | ID: mdl-29494918

RÉSUMÉ

Gastrointestinal endoscopy is an important tool for the indentification and treatment of disorders of the gastrointestinal tract. However, nosocomial infections of Helicobacter pylori have been linked to the use of contaminated endoscopes. Disinfectants such as glutaraldehyde, ortho-phthalaldehyde and peracetic acid are generally used in the reprocesssing of endoscopes, but these chemicals are hazardous to human health. Thus, safer reprocessing and disinfecion methods are needed. In this study, we applied a dielectric barrier discharge (DBD) plasma torch for inactivation of H. pylori to investigate a potential new methodology to disinfect endoscopes. Suspensions of H. pylori in 10% glycerol were subjected to the DBD plasma torch, which reduced the viable cell count to undetectable levels after 2 min of treatment. Furthermore, urease activity of H. pylori was eliminated after 2 min-plasma treatment, while plasma-treatment reduced the intact DNA of H. pylori in a time-dependent manner. Next, we examined several potential bactericidal factors produced by the DBD plasma torch. Two min-plasma treatment resulted in a small temperature rise (4 °C), ultraviolet radiation (UV) generation, and the production of hydrogen peroxide. H. pylori samples were then exposed to equivalent levels of each of these factors in turn. Our results showed that treatment with heat and hydrogen peroxide at the levels produced after 2-min of plasma treatment did not efficiently inactivate H. pylori, whereas exposure to UV had a significant bactericidal effect. Taken together, UV generated by the plasma torch may be crucial for efficient inactivation of H. pylori by damaging the bacterial DNA.


Sujet(s)
Altération de l'ADN/effets des radiations , ADN bactérien/génétique , Désinfection/méthodes , Endoscopes/microbiologie , Infections à Helicobacter/prévention et contrôle , Helicobacter pylori/effets des radiations , Rayons ultraviolets , Antibactériens , Mort cellulaire/effets des radiations , ADN bactérien/effets des radiations , Contamination de matériel/prévention et contrôle , Infections à Helicobacter/microbiologie , Infections à Helicobacter/transmission , Humains
11.
J Biosci ; 43(1): 15-23, 2018 Mar.
Article de Anglais | MEDLINE | ID: mdl-29485112

RÉSUMÉ

Presence of low concentrations (1-2%) of ethanol during irradiation exhibited significant protection against DNA damage caused by very high doses (2-12 kGy) of 60 Co-gamma-rays in vitro. Radiation-induced DNA damage was substantially reduced in different types of DNA molecules (chromosomal DNA from Anabaena 7120 or Deinococcus radiodurans or bacteriophage Lambda, and plasmid pBluescript DNA) when irradiated in the presence of ethanol, thus indicating the generic nature of ethanol protection. The radioprotection appeared to be a consequence of the well known ability of ethanol to scavenge hydroxyl radicals. Addition of ethanol during 6 kGy irradiation also reduced DNA damage in vivo and improved post-irradiation growth recovery of Anabaena 7120 cultures. To our knowledge, this is the first instance of ability of very low ethanol concentrations to protect DNA from damage triggered by extremely high doses of 60 Co-gamma rays.


Sujet(s)
Anabaena/effets des médicaments et des substances chimiques , ADN bactérien/effets des médicaments et des substances chimiques , Deinococcus/effets des médicaments et des substances chimiques , Éthanol/pharmacologie , Piégeurs de radicaux libres/pharmacologie , Radioprotecteurs/pharmacologie , Anabaena/effets des radiations , Altération de l'ADN , ADN bactérien/effets des radiations , Deinococcus/effets des radiations , Relation dose-effet des médicaments , Relation dose-effet des rayonnements , Éthanol/composition chimique , Rayons gamma/effets indésirables , Radical hydroxyle/antagonistes et inhibiteurs , Radical hydroxyle/métabolisme , Plasmides/effets des radiations
12.
Appl Microbiol Biotechnol ; 102(4): 1923-1931, 2018 Feb.
Article de Anglais | MEDLINE | ID: mdl-29349494

RÉSUMÉ

Numerous prokaryotes accumulate polyhydroxyalkanoates (PHA) in the form of intracellular granules. The primary function of PHA is the storage of carbon and energy. Nevertheless, there are numerous reports that the presence of PHA granules in microbial cells enhances their stress resistance and fitness when exposed to various stress factors. In this work, we studied the protective mechanism of PHA granules against UV irradiation employing Cupriavidus necator as a model bacterial strain. The PHA-accumulating wild type strain showed substantially higher UV radiation resistance than the PHA non-accumulating mutant. Furthermore, the differences in UV-Vis radiation interactions with both cell types were studied using various spectroscopic approaches (turbidimetry, absorption spectroscopy, and nephelometry). Our results clearly demonstrate that intracellular PHA granules efficiently scatter UV radiation, which provides a substantial UV-protective effect for bacterial cells and, moreover, decreases the intracellular level of reactive oxygen species in UV-challenged cells. The protective properties of the PHA granules are enhanced by the fact that granules specifically bind to DNA, which in turn provides shield-like protection of DNA as the most UV-sensitive molecule. To conclude, the UV-protective action of PHA granules adds considerable value to their primary storage function, which can be beneficial in numerous environments.


Sujet(s)
Cupriavidus necator/métabolisme , Cupriavidus necator/effets des radiations , Polyhydroxyalcanoates/métabolisme , Rayons ultraviolets , Cupriavidus necator/composition chimique , ADN bactérien/métabolisme , ADN bactérien/effets des radiations , Viabilité microbienne/effets des radiations , Espèces réactives de l'oxygène/analyse
13.
Biointerphases ; 13(6): 061005, 2018 12 31.
Article de Anglais | MEDLINE | ID: mdl-30599511

RÉSUMÉ

Compromised detection of short DNA fragments can result in underestimation of radiation-induced clustered DNA damage. The fragments can be detected with atomic force microscopy (AFM), followed by image analysis to compute the length of plasmid molecules. Plasmid molecules imaged with AFM are represented by open or closed curves, possibly with crossings. For the analysis of such objects, a dedicated algorithm was developed, and its usability was demonstrated on the AFM images of plasmid pBR322 irradiated with 60Co gamma rays. The analysis of the set of the acquired AFM images revealed the presence of DNA fragments with lengths shorter than 300 base pairs that would have been neglected by a conventional detection method.


Sujet(s)
ADN bactérien/composition chimique , ADN bactérien/effets des radiations , Traitement d'image par ordinateur/méthodes , Microscopie à force atomique/méthodes , Plasmides/composition chimique , Plasmides/effets des radiations , Phénomènes chimiques , Masse moléculaire
14.
Adv Exp Med Biol ; 996: 295-309, 2017.
Article de Anglais | MEDLINE | ID: mdl-29124710

RÉSUMÉ

Ultraviolet blood irradiation (UBI) was extensively used in the 1940s and 1950s to treat many diseases including septicemia, pneumonia, tuberculosis, arthritis, asthma and even poliomyelitis. The early studies were carried out by several physicians in USA and published in the American Journal of Surgery. However with the development of antibiotics, UBI use declined and it has now been called "the cure that time forgot". Later studies were mostly performed by Russian workers and in other Eastern countries and the modern view in Western countries is that UBI remains highly controversial.This chapter discusses the potential of UBI as an alternative approach to current methods used to treat infections, as an immune-modulating therapy and as a method for normalizing blood parameters. No resistance of microorganisms to UV irradiation has been reported, and multi-antibiotic resistant strains are as susceptible as their wild-type counterparts. Low and mild doses of UV kill microorganisms by damaging the DNA, while any DNA damage in host cells can be rapidly repaired by DNA repair enzymes. However the use of UBI to treat septicemia cannot be solely due to UV-mediated killing of bacteria in the blood-stream, as only 5-7% of blood volume needs to be treated with UV to produce the optimum benefit. UBI may enhance the phagocytic capacity of various phagocytic cells (neutrophils and dendritic cells), inhibit lymphocytes, and oxidize blood lipids. The oxidative nature of UBI may have mechanisms in common with ozone therapy and other oxygen therapies. There may be some similarities to extracorporeal photopheresis (ECP) using psoralens and UVA irradiation. However there are differences between UBI and ECP in that UBI tends to stimulate the immune system, while ECP tends to be immunosuppressive. With the recent emergence of bacteria that are resistant to all known antibiotics, UBI should be more investigated as an alternative approach to infections, and as an immune-modulating therapy.


Sujet(s)
Bactéries/effets des radiations , Infections bactériennes/thérapie , Sang/effets des radiations , Photophérèse/méthodes , Rayons ultraviolets , Traitement par ultraviolets/méthodes , Animaux , Bactéries/génétique , Bactéries/croissance et développement , Infections bactériennes/sang , Infections bactériennes/microbiologie , Charge bactérienne/effets des radiations , Sang/microbiologie , Altération de l'ADN , ADN bactérien/génétique , ADN bactérien/effets des radiations , Humains , Viabilité microbienne/effets des radiations , Photophérèse/effets indésirables , Résultat thérapeutique , Rayons ultraviolets/effets indésirables , Traitement par ultraviolets/effets indésirables
15.
Biochem Biophys Res Commun ; 494(1-2): 365-371, 2017 12 09.
Article de Anglais | MEDLINE | ID: mdl-28988110

RÉSUMÉ

Isolated Agrobacterium tumefaciens was exposed to different extremely low frequencies of square amplitude modulated waves (QAMW) from two generators to determine the resonance frequency that causes growth inhibition. The carrier was 10 MHz sine wave with amplitude ±10 Vpp which was modulated by a second wave generator with a modulation depth of ± 2Vpp and constant field strength of 200 V/m at 28 °C. The exposure of A. tumefaciens to 1.0 Hz QAMW for 90 min inhibited the bacterial growth by 49.2%. In addition, the tested antibiotics became more effective against A. tumefaciens after the exposure. Furthermore, results of DNA, dielectric relaxation and TEM showed highly significant molecular and morphological changes due to the exposure to 1.0 Hz QAMW for 90 min. An in-vivo study has been carried out on healthy tomato plants to test the pathogenicity of A. tumefaciens before and after the exposure to QAMW at the inhibiting frequency. Symptoms of crown gall and all pathological symptoms were more aggressive in tomato plants treated with non-exposed bacteria, comparing with those treated with exposed bacteria. We concluded that, the exposure of A. tumefaciens to 1.0 Hz QAMW for 90 min modified its cellular activity and DNA structure, which inhibited the growth and affected the microbe pathogenicity.


Sujet(s)
Agrobacterium tumefaciens/effets des radiations , Antibactériens/pharmacologie , ADN bactérien/effets des radiations , Rayonnements électromagnétiques , Agrobacterium tumefaciens/effets des médicaments et des substances chimiques , Agrobacterium tumefaciens/génétique , Agrobacterium tumefaciens/croissance et développement , Amikacine/pharmacologie , Carbénicilline/pharmacologie , Céfaclor/pharmacologie , Chloramphénicol/pharmacologie , Ciprofloxacine/pharmacologie , ADN bactérien/effets des médicaments et des substances chimiques , Fluoroquinolones/pharmacologie , Gatifloxacine , Gentamicine/pharmacologie , Solanum lycopersicum/microbiologie , Tumeurs végétales/microbiologie , Rifampicine/pharmacologie
16.
Food Res Int ; 97: 280-287, 2017 07.
Article de Anglais | MEDLINE | ID: mdl-28578053

RÉSUMÉ

Recently, UVC-LED technology has been validated as an alternative to irradiation with conventional mercury UV lamps. In this study, we sought to determine primary factors affecting reduction trends shown in several microorganisms. Four major foodborne pathogens (Escherichia coli O157:H7, Salmonella spp. Listeria monocytogenes, Staphylococcus aureus) and spoilage yeasts (Saccharomyces pastorianus, Pichia membranaefaciens), important to the brewing industry, were inoculated onto selective and non-selective media in order to investigate reduction tendencies at 4 different peak wavelengths (266 to 279nm). As irradiation dose increased, inactivation levels for every microorganism were enhanced, but there were different UV-sensitivities in Gram positive bacteria (GP), Gram negative bacteria (GN), and yeasts (Y). Loss of membrane integrity measured by propidium iodide (PI) increased as peak wavelength increased for every microorganism studied. Similar results were observed in membrane potential measured by DiBAC4(3). However, there were contrasting results which showed that greater DNA damage occurred at a lower peak wavelength as measured by Hoechst 33,258. The level of DNA damage was strongly related to trends of microbial inactivation. This study showed that even though membrane damage was present in every microorganism studied, DNA damage was the primary factor for inactivating microorganisms through UVC-LED treatment.


Sujet(s)
Maladies d'origine alimentaire , Bactéries à Gram négatif/effets des radiations , Bactéries à Gram positif/effets des radiations , Viabilité microbienne/effets des radiations , Rayons ultraviolets , Membrane cellulaire/effets des radiations , Altération de l'ADN/effets des radiations , ADN bactérien/effets des radiations , Irradiation des aliments , Maladies d'origine alimentaire/microbiologie , Maladies d'origine alimentaire/prévention et contrôle , Bactéries à Gram négatif/pathogénicité , Bactéries à Gram positif/pathogénicité , Humains
17.
DNA Repair (Amst) ; 53: 31-42, 2017 05.
Article de Anglais | MEDLINE | ID: mdl-28320593

RÉSUMÉ

DNA repair enzymes typically recognize their substrate lesions with high affinity to ensure efficient lesion repair. In UV irradiated endospores, a special thymine dimer, 5-thyminyl-5,6-dihydrothymine, termed the spore photoproduct (SP), is the dominant DNA photolesion, which is rapidly repaired during spore outgrowth mainly by spore photoproduct lyase (SPL) using an unprecedented protein-harbored radical transfer process. Surprisingly, our in vitro studies using SP-containing short oligonucleotides, pUC 18 plasmid DNA, and E. coli genomic DNA found that they are all poor substrates for SPL in general, exhibiting turnover numbers of 0.01-0.2min-1. The faster turnover numbers are reached under single turnover conditions, and SPL activity is low with oligonucleotide substrates at higher concentrations. Moreover, SP-containing oligonucleotides do not go past one turnover. In contrast, the dinucleotide SP TpT exhibits a turnover number of 0.3-0.4min-1, and the reaction may reach up to 10 turnovers. These observations distinguish SPL from other specialized DNA repair enzymes. To the best of our knowledge, SPL represents an unprecedented example of a major DNA repair enzyme that cannot effectively repair its substrate lesion within the normal DNA conformation adopted in growing cells. Factors such as other DNA binding proteins, helicases or an altered DNA conformation may cooperate with SPL to enable efficient SP repair in germinating spores. Therefore, both SP formation and SP repair are likely to be tightly controlled by the unique cellular environment in dormant and outgrowing spore-forming bacteria, and thus SP repair may be extremely slow in non-spore-forming organisms.


Sujet(s)
Bacillus subtilis/enzymologie , Réparation de l'ADN , ADN bactérien/métabolisme , Deoxyribodipyrimidine photo-lyase/métabolisme , Thymine/analogues et dérivés , Bacillus subtilis/génétique , Protéines bactériennes/métabolisme , Altération de l'ADN , ADN bactérien/effets des radiations , Escherichia coli/métabolisme , Cinétique , Dimères de pyrimidine/métabolisme , Thymine/métabolisme , Rayons ultraviolets
18.
BMC Microbiol ; 17(1): 34, 2017 Feb 15.
Article de Anglais | MEDLINE | ID: mdl-28202049

RÉSUMÉ

BACKGROUND: Natural transformation enables acquisition of adaptive traits and drives genome evolution in prokaryotes. Yet, the selective forces responsible for the evolution and maintenance of natural transformation remain elusive since taken-up DNA has also been hypothesized to provide benefits such as nutrients or templates for DNA repair to individual cells. RESULTS: We investigated the immediate effects of DNA uptake and recombination on the naturally competent bacterium Acinetobacter baylyi in both benign and genotoxic conditions. In head-to-head competition experiments between DNA uptake-proficient and -deficient strains, we observed a fitness benefit of DNA uptake independent of UV stress. This benefit was found with both homologous and heterologous DNA and was independent of recombination. Recombination with taken-up DNA reduced survival of transformed cells with increasing levels of UV-stress through interference with nucleotide excision repair, suggesting that DNA strand breaks occur during recombination attempts with taken-up DNA. Consistent with this, we show that absence of RecBCD and RecFOR recombinational DNA repair pathways strongly decrease natural transformation. CONCLUSIONS: Our data show a physiological benefit of DNA uptake unrelated to recombination. In contrast, recombination during transformation is a strand break inducing process that represents a previously unrecognized cost of natural transformation.


Sujet(s)
Acinetobacter/génétique , Acinetobacter/effets des radiations , Évolution biologique , Analyse coût-bénéfice , Transformation bactérienne/génétique , Transformation bactérienne/effets des radiations , Acinetobacter/enzymologie , Acinetobacter/métabolisme , Protéines bactériennes/génétique , Protéines bactériennes/métabolisme , Protéines bactériennes/effets des radiations , Altération de l'ADN/effets des radiations , Réparation de l'ADN/physiologie , Réparation de l'ADN/effets des radiations , ADN bactérien/génétique , ADN bactérien/effets des radiations , Exodeoxyribonuclease V/métabolisme , Exodeoxyribonuclease V/effets des radiations , Délétion de gène , Transfert horizontal de gène/génétique , Transfert horizontal de gène/effets des radiations , Gènes bactériens/génétique , Gènes bactériens/effets des radiations , Protéines membranaires/génétique , Protéines membranaires/effets des radiations , Mutation/génétique , Mutation/effets des radiations , Phénotype , Recombinaison génétique/effets des radiations , Stress physiologique , Survie , Rayons ultraviolets/effets indésirables
19.
J Photochem Photobiol B ; 167: 150-157, 2017 Feb.
Article de Anglais | MEDLINE | ID: mdl-28064075

RÉSUMÉ

Blue light inactivates methicillin-resistant Staphylococcus aureus (MRSA), a Gram-positive antibiotic resistant bacterium that leads to fatal infections; however, the mechanism of bacterial death remains unclear. In this paper, to uncover the mechanism underlying the bactericidal effect of blue light, a combination of Fourier transform infrared (FTIR) spectroscopy and chemometric tools is employed to detect the photoreactivity of MRSA and its distinctive pathway toward apoptosis after treatment. The mechanism of action of UV light and vancomycin against MRSA is also investigated to support the findings. Principal component analysis followed by linear discriminant analysis (PCA- LDA) is employed to reveal clustering of five groups of MRSA samples, namely untreated (control I), untreated and incubated at ambient air (control II), irradiated with 470nm blue light, irradiated with 253.5 UV light, and vancomycin-treated MRSA. Loadings plot from PCA-LDA analysis reveals important functional groups in proteins (1683, 1656, 1596, 1542cm-1), lipids (1743, 1409cm-1), and nucleic acids region of the spectrum (1060, 1087cm-1) that are responsible for the classification of blue light irradiated spectra and control spectra. Cluster vector plots and scores plot reveals that UV light-irradiated spectra are the most biochemically similar to blue light- irradiated spectra; however, some wavenumbers experience a shift. The shifts between blue light and UV light irradiated loadings plot at νasym PO2- band (from 1228 to 1238cm-1), DNA backbone (from 970 to 966cm-1) and base pairing vibration of DNA (from 1717 to 1712cm-1) suggest distinctive changes in DNA conformation in response to irradiation. Our findings indicate that irradiation of MRSA with 470nm light induces A-DNA cleavage and that B-DNA is more resistant to damage by blue light. Blue light and UV light treatment of MRSA are complementary and distinct from the known antimicrobial effect of vancomycin. Moreover, it is known that UV-induced cleavage of DNA predominantly targets B-DNA, which is in agreement with the FTIR findings. Overall the results suggest that the combination of light and vancomycin could be a more robust approach in treating MRSA infections.


Sujet(s)
Lumière , Staphylococcus aureus résistant à la méticilline/effets des radiations , Microscopie/méthodes , Antibactériens/pharmacologie , Numération de colonies microbiennes , ADN bactérien/effets des radiations , Staphylococcus aureus résistant à la méticilline/effets des médicaments et des substances chimiques , Staphylococcus aureus résistant à la méticilline/génétique , Tests de sensibilité microbienne , Spectroscopie infrarouge à transformée de Fourier , Vancomycine/pharmacologie
20.
J Hazard Mater ; 323(Pt A): 434-441, 2017 Feb 05.
Article de Anglais | MEDLINE | ID: mdl-27072309

RÉSUMÉ

Conventional wastewater treatment has a limited capacity to reduce antibiotic resistant bacteria and genes (ARB&ARG). Tertiary treatment processes are promising solutions, although the transitory inactivation of bacteria may select ARB&ARG. This study aimed at assessing the potential of ozonation and UV254nm radiation to inactivate cultivable fungal and bacterial populations, and the selected genes 16S rRNA (common to all bacteria), intI1 (common in Gram-negative bacteria) and the ARG vanA, blaTEM, sul1 and qnrS. The abundance of the different microbiological parameters per volume of wastewater was reduced by ∼2 log units for cultivable fungi and 16S rRNA and intI1 genes, by∼3-4 log units, for total heterotrophs, enterobacteria and enterococci, and to values close or below the limits of quantification for ARG, for both processes, after a contact time of 30min. Yet, most of the cultivable populations, the 16S rRNA and intI1 genes as well as the ARG, except qnrS after ozonation, reached pre-treatment levels after 3days storage, suggesting a transitory rather than permanent microbial inactivation. Noticeably, normalization per 16S rRNA gene evidenced an increase of the ARG and intI1 prevalence, mainly after UV254nm treatment. The results suggest that these tertiary treatments may be selecting for ARB&ARG populations.


Sujet(s)
Résistance microbienne aux médicaments/génétique , Résistance microbienne aux médicaments/effets des radiations , Ozone/composition chimique , Élimination des déchets liquides/méthodes , Eaux usées/composition chimique , Microbiologie de l'eau , Bactéries/génétique , Charge bactérienne , Villes , ADN bactérien/effets des médicaments et des substances chimiques , ADN bactérien/génétique , ADN bactérien/effets des radiations , Désinfection , ARN ribosomique 16S/génétique , Rayons ultraviolets
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