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1.
Cell Mol Life Sci ; 78(23): 7451-7468, 2021 Dec.
Article de Anglais | MEDLINE | ID: mdl-34718827

RÉSUMÉ

In human metabolism, pyruvate dehydrogenase complex (PDC) is one of the most intricate and large multimeric protein systems representing a central hub for cellular homeostasis. The worldwide used antiepileptic drug valproic acid (VPA) may potentially induce teratogenicity or a mild to severe hepatic toxicity, where the underlying mechanisms are not completely understood. This work aims to clarify the mechanisms that intersect VPA-related iatrogenic effects to PDC-associated dihydrolipoamide dehydrogenase (DLD; E3) activity. DLD is also a key enzyme of α-ketoglutarate dehydrogenase, branched-chain α-keto acid dehydrogenase, α-ketoadipate dehydrogenase, and the glycine decarboxylase complexes. The molecular effects of VPA will be reviewed underlining the data that sustain a potential interaction with DLD. The drug-associated effects on lipoic acid-related complexes activity may induce alterations on the flux of metabolites through tricarboxylic acid cycle, branched-chain amino acid oxidation, glycine metabolism and other cellular acetyl-CoA-connected reactions. The biotransformation of VPA involves its complete ß-oxidation in mitochondria causing an imbalance on energy homeostasis. The drug consequences as histone deacetylase inhibitor and thus gene expression modulator have also been recognized. The mitochondrial localization of PDC is unequivocal, but its presence and function in the nucleus were also demonstrated, generating acetyl-CoA, crucial for histone acetylation. Bridging metabolism and epigenetics, this review gathers the evidence of VPA-induced interference with DLD or PDC functions, mainly in animal and cellular models, and highlights the uncharted in human. The consequences of this interaction may have significant impact either in mitochondrial or in nuclear acetyl-CoA-dependent processes.


Sujet(s)
Dihydrolipoamide dehydrogenase/métabolisme , Inhibiteurs de désacétylase d'histone/effets indésirables , Maladie iatrogène , Complexe du pyruvate déshydrogénase/métabolisme , Acide valproïque/effets indésirables , 3-Methyl-2-oxobutanoate dehydrogenase (lipoamide)/métabolisme , Acétyl coenzyme A/biosynthèse , Acétylation , Animaux , Glycine dehydrogenase (decarboxylating)/métabolisme , Humains , Ketoglutarate dehydrogenase complex/métabolisme , Cetone oxidoreductases/métabolisme , Foie/anatomopathologie , Mitochondries/métabolisme , Oxydoréduction/effets des médicaments et des substances chimiques , Tératogènes/métabolisme
2.
Chem Biodivers ; 18(12): e2100633, 2021 Dec.
Article de Anglais | MEDLINE | ID: mdl-34643056

RÉSUMÉ

The increasing resistance of plant diseases caused by phytopathogenic fungi highlights the need for highly effective and environmentally benign agents. The antifungal activities of Cnidium monnieri fruit extracts and five isolated compounds as well as structurally related coumarins against five plant pathogenic fungi were evaluated. The acetone extract, which contained the highest amount of five coumarins, showed strongest antifungal activity. Among the coumarin compounds, we found that 4-methoxycoumarin exhibited stronger and broader antifungal activity against five phytopathogenic fungi, and was more potent than osthol. Especially, it could significantly inhibit the growth of Rhizoctonia solani mycelium with an EC50 value of 21 µg mL-1 . Further studies showed that 4-methoxycoumarin affected the structure and function of peroxisomes, inhibited the ß-oxidation of fatty acids, decreased the production of ATP and acetyl coenzyme A, and then accumulated ROS by damaging MMP and the mitochondrial function to cause the cell death of R. solani mycelia. 4-Methoxycoumarin presented antifungal efficacy in a concentration- dependent manner in vivo and could be used to prevent the potato black scurf. This study laid the foundation for the future development of 4-methoxycournamin as an alternative and friendly biofungicide.


Sujet(s)
Antifongiques/pharmacologie , Cnidium/composition chimique , Coumarines/pharmacologie , Fruit/composition chimique , Rhizoctonia/effets des médicaments et des substances chimiques , Acétyl coenzyme A/antagonistes et inhibiteurs , Acétyl coenzyme A/biosynthèse , Adénosine triphosphate/antagonistes et inhibiteurs , Adénosine triphosphate/biosynthèse , Antifongiques/composition chimique , Antifongiques/isolement et purification , Coumarines/composition chimique , Coumarines/isolement et purification , Acides gras/antagonistes et inhibiteurs , Acides gras/métabolisme , Tests de sensibilité microbienne , Structure moléculaire , Rhizoctonia/croissance et développement
3.
Appl Microbiol Biotechnol ; 105(19): 7321-7337, 2021 Oct.
Article de Anglais | MEDLINE | ID: mdl-34491400

RÉSUMÉ

Coenzyme A (CoA) and its derivatives such as acetyl-CoA are essential metabolites for several biosynthetic reactions. In the yeast S. cerevisiae, five enzymes (encoded by essential genes CAB1-CAB5; coenzyme A biosynthesis) are required to perform CoA biosynthesis from pantothenate, cysteine, and ATP. Similar to enzymes from other eukaryotes, yeast pantothenate kinase (PanK, encoded by CAB1) turned out to be inhibited by acetyl-CoA. By genetic selection of intragenic suppressors of a temperature-sensitive cab1 mutant combined with rationale mutagenesis of the presumed acetyl-CoA binding site within PanK, we were able to identify the variant CAB1 W331R, encoding a hyperactive PanK completely insensitive to inhibition by acetyl-CoA. Using a versatile gene integration cassette containing the TPI1 promoter, we constructed strains overexpressing CAB1 W331R in combination with additional genes of CoA biosynthesis (CAB2, CAB3, HAL3, CAB4, and CAB5). In these strains, the level of CoA nucleotides was 15-fold increased, compared to a reference strain without additional CAB genes. Overexpression of wild-type CAB1 instead of CAB1 W331R turned out as substantially less effective (fourfold increase of CoA nucleotides). Supplementation of overproducing strains with additional pantothenate could further elevate the level of CoA (2.3-fold). Minor increases were observed after overexpression of FEN2 (encoding a pantothenate permease) and deletion of PCD1 (CoA-specific phosphatase). We conclude that the strategy described in this work may improve the efficiency of biotechnological applications depending on acetyl-CoA. Key points • A gene encoding a hyperactive yeast pantothenate kinase (PanK) was constructed. • Overexpression of CoA biosynthetic genes elevated CoA nucleotides 15-fold. • Supplementation with pantothenate further increased the level of CoA nucleotides.


Sujet(s)
Acétyl coenzyme A/biosynthèse , Phosphotransferases (Alcohol Group Acceptor)/génétique , Saccharomyces cerevisiae , Voies de biosynthèse/génétique , Microbiologie industrielle , Micro-organismes génétiquement modifiés , Saccharomyces cerevisiae/génétique
5.
ACS Synth Biol ; 10(3): 495-504, 2021 03 19.
Article de Anglais | MEDLINE | ID: mdl-33576609

RÉSUMÉ

Ethyl acetate can be synthesized from acetyl-CoA and ethanol via a reaction by alcohol acetyltransferases (AATase) in yeast. In order to increase the yield of acetyl-CoA, different terminators were used to optimize the expressions of acetyl-CoA synthetase (ACS1/2) and aldehyde dehydrogenase (ALD6) to increase the contents of acetyl-CoA in Saccharomyces cerevisiae. ATF1 coding AATase was coexpressed in expression cassettes of ACS1/ACS2 and ALD6 to promote the carbon flux toward ethyl acetate from acetyl-CoA. Further to improve ethyl acetate production, four heterologous AATase including HuvEAT1 (Hanseniaspora uvarum), KamEAT1 (Kluyveromyces marxianus), VAAT (wild strawberry), and AeAT9 (kiwifruit) were introduced. Subsequently mitochondrial transport and utilization of pyruvate and acetyl-CoA were impeded to increase the ethyl acetate accumulation in cytoplasm. Under the optimal fermentation conditions, the engineered strain of PGAeΔPOR2 produced 1.69 g/L ethyl acetate, which was the highest value reported to date by metabolic engineering methods.


Sujet(s)
Acétates/métabolisme , Génie métabolique , Saccharomyces cerevisiae/métabolisme , Acétates/composition chimique , Acétyl coenzyme A/biosynthèse , Acyltransferases/génétique , Acyltransferases/métabolisme , Coenzyme A ligases/génétique , Coenzyme A ligases/métabolisme , Hanseniaspora/enzymologie , Kluyveromyces/enzymologie , Acide pyruvique/métabolisme
6.
J Surg Res ; 259: 242-252, 2021 03.
Article de Anglais | MEDLINE | ID: mdl-33250204

RÉSUMÉ

BACKGROUND: The optimal substrate for hypothermic machine perfusion preservation of donor hearts is unknown. Fatty acids, acetate, and ketones are preferred substrates of the heart during normothermic perfusion, but cannot replete the tricarboxylic acid (TCA) cycle directly. Propionate, an anaplerotic substrate, can replenish TCA cycle intermediates and may affect cardiac metabolism. The purpose of this study was to determine myocardial substrate preferences during hypothermic machine perfusion and to assess if an anaplerotic substrate was required to maintain the TCA cycle intermediate pool in perfused hearts. METHODS: Groups of rat hearts were perfused with carbon-13 (13C)-labeled substrates (acetate, ß-hydroxybutyrate, octanoate, with and without propionate) at low and high concentrations. TCA cycle intermediate concentrations, substrate selection, and TCA cycle flux were determined by gas chromatography/mass spectroscopy and 13C magnetic resonance spectroscopy. RESULTS: Acetate and octanoate were preferentially oxidized, whereas ß-hydroxybutyrate was a minor substrate. TCA cycle intermediate concentrations except fumarate were higher in substrate-containing perfusion groups compared with either the no-substrate perfusion group or the no-ischemia control group. CONCLUSIONS: The presence of an exogenous, oxidizable substrate is required to support metabolism in the cold perfused heart. An anaplerotic substrate is not essential to maintain the TCA cycle intermediate pool and support oxidative metabolism under these conditions.


Sujet(s)
Cycle citrique , Transplantation cardiaque , Myocarde/métabolisme , Conservation d'organe , Acétyl coenzyme A/biosynthèse , Animaux , Caprylates/métabolisme , Mâle , Consommation d'oxygène , Perfusion , Acide pyruvique/métabolisme , Rats , Rat Sprague-Dawley
7.
Nucleic Acids Res ; 49(D1): D498-D508, 2021 01 08.
Article de Anglais | MEDLINE | ID: mdl-33211880

RÉSUMÉ

The BRENDA enzyme database (https://www.brenda-enzymes.org), established in 1987, has evolved into the main collection of functional enzyme and metabolism data. In 2018, BRENDA was selected as an ELIXIR Core Data Resource. BRENDA provides reliable data, continuous curation and updates of classified enzymes, and the integration of newly discovered enzymes. The main part contains >5 million data for ∼90 000 enzymes from ∼13 000 organisms, manually extracted from ∼157 000 primary literature references, combined with information of text and data mining, data integration, and prediction algorithms. Supplements comprise disease-related data, protein sequences, 3D structures, genome annotations, ligand information, taxonomic, bibliographic, and kinetic data. BRENDA offers an easy access to enzyme information from quick to advanced searches, text- and structured-based queries for enzyme-ligand interactions, word maps, and visualization of enzyme data. The BRENDA Pathway Maps are completely revised and updated for an enhanced interactive and intuitive usability. The new design of the Enzyme Summary Page provides an improved access to each individual enzyme. A new protein structure 3D viewer was integrated. The prediction of the intracellular localization of eukaryotic enzymes has been implemented. The new EnzymeDetector combines BRENDA enzyme annotations with protein and genome databases for the detection of eukaryotic and prokaryotic enzymes.


Sujet(s)
Bases de données de protéines , Enzymes/composition chimique , Acétyl coenzyme A/biosynthèse , Arabidopsis/enzymologie , Bacillus subtilis/enzymologie , Imagerie tridimensionnelle , Voies et réseaux métaboliques , Annotation de séquence moléculaire , Moteur de recherche
8.
Cardiovasc Res ; 117(6): 1434-1449, 2021 05 25.
Article de Anglais | MEDLINE | ID: mdl-33098415

RÉSUMÉ

Caloric restriction mimetics (CRMs) are emerging as potential therapeutic agents for the treatment of cardiovascular diseases. CRMs include natural and synthetic compounds able to inhibit protein acetyltransferases, to interfere with acetyl coenzyme A biosynthesis, or to activate (de)acetyltransferase proteins. These modifications mimic the effects of caloric restriction, which is associated with the activation of autophagy. Previous evidence demonstrated the ability of CRMs to ameliorate cardiac function and reduce cardiac hypertrophy and maladaptive remodelling in animal models of ageing, mechanical overload, chronic myocardial ischaemia, and in genetic and metabolic cardiomyopathies. In addition, CRMs were found to reduce acute ischaemia-reperfusion injury. In many cases, these beneficial effects of CRMs appeared to be mediated by autophagy activation. In the present review, we discuss the relevant literature about the role of different CRMs in animal models of cardiac diseases, emphasizing the molecular mechanisms underlying the beneficial effects of these compounds and their potential future clinical application.


Sujet(s)
Mimétisme biologique , Restriction calorique , Agents cardiovasculaires/usage thérapeutique , Maladies cardiovasculaires/traitement médicamenteux , Acétyl coenzyme A/biosynthèse , Acetyltransferases/antagonistes et inhibiteurs , Acetyltransferases/métabolisme , Animaux , Autophagie/effets des médicaments et des substances chimiques , Maladies cardiovasculaires/métabolisme , Maladies cardiovasculaires/anatomopathologie , Modèles animaux de maladie humaine , Humains
9.
PLoS Biol ; 18(11): e3000981, 2020 11.
Article de Anglais | MEDLINE | ID: mdl-33253182

RÉSUMÉ

The metabolite acetyl-coenzyme A (acetyl-CoA) serves as an essential element for a wide range of cellular functions including adenosine triphosphate (ATP) production, lipid synthesis, and protein acetylation. Intracellular acetyl-CoA concentrations are associated with nutrient availability, but the mechanisms by which a cell responds to fluctuations in acetyl-CoA levels remain elusive. Here, we generate a cell system to selectively manipulate the nucleo-cytoplasmic levels of acetyl-CoA using clustered regularly interspaced short palindromic repeat (CRISPR)-mediated gene editing and acetate supplementation of the culture media. Using this system and quantitative omics analyses, we demonstrate that acetyl-CoA depletion alters the integrity of the nucleolus, impairing ribosomal RNA synthesis and evoking the ribosomal protein-dependent activation of p53. This nucleolar remodeling appears to be mediated through the class IIa histone deacetylases (HDACs). Our findings highlight acetylation-mediated control of the nucleolus as an important hub linking acetyl-CoA fluctuations to cellular stress responses.


Sujet(s)
Acétyl coenzyme A/biosynthèse , Nucléole/métabolisme , ATP citrate (pro-S)-lyase/déficit , ATP citrate (pro-S)-lyase/génétique , ATP citrate (pro-S)-lyase/métabolisme , Acétates/métabolisme , Acétylation , Lignée cellulaire , Nucléole/ultrastructure , Expression des gènes , Techniques de knock-out de gènes , Cellules HCT116 , Histone deacetylases/métabolisme , Humains , Modèles biologiques , Protéines nucléaires/métabolisme , Maturation post-traductionnelle des protéines , Protéines ribosomiques/métabolisme , Protéine p53 suppresseur de tumeur/métabolisme
10.
Sci Rep ; 10(1): 17914, 2020 10 21.
Article de Anglais | MEDLINE | ID: mdl-33087819

RÉSUMÉ

TGF-ß1 reprograms metabolism in renal fibroblasts, inducing a switch from oxidative phosphorylation to aerobic glycolysis. However, molecular events underpinning this are unknown. Here we identify that TGF-ß1 downregulates acetyl-CoA biosynthesis via regulation of the pyruvate dehydrogenase complex (PDC). Flow cytometry showed that TGF-ß1 reduced the PDC subunit PDH-E1α in fibroblasts derived from injured, but not normal kidneys. An increase in expression of PDH kinase 1 (PDK1), and reduction in the phosphatase PDP1, were commensurate with net phosphorylation and inactivation of PDC. Over-expression of mutant PDH-E1α, resistant to phosphorylation, ameliorated effects of TGF-ß1, while inhibition of PDC activity with CPI-613 was sufficient to induce αSMA and pro-collagen I expression, markers of myofibroblast differentiation and fibroblast activation. The effect of TGF-ß1 on PDC activity, acetyl-CoA, αSMA and pro-collagen I was also ameliorated by sodium dichloroacetate, a small molecule inhibitor of PDK. A reduction in acetyl-CoA, and therefore acetylation substrate, also resulted in a generalised loss of protein acetylation with TGF-ß1. In conclusion, TGF-ß1 in part regulates fibroblast activation via effects on PDC activity.


Sujet(s)
Fibroblastes/métabolisme , Rein/cytologie , Complexe du pyruvate déshydrogénase/métabolisme , Facteur de croissance transformant bêta-1/pharmacologie , Facteur de croissance transformant bêta-1/physiologie , Acétyl coenzyme A/biosynthèse , Acétylation/effets des médicaments et des substances chimiques , Actines/métabolisme , Caprylates/métabolisme , Collagène de type I/métabolisme , Acide dichloro-acétique/pharmacologie , Régulation négative/effets des médicaments et des substances chimiques , Humains , Mutation , Phosphorylation oxydative/effets des médicaments et des substances chimiques , Protein phosphatase 2C/métabolisme , Pyruvate dehydrogenase (lipoamide)/génétique , Pyruvate dehydrogenase (lipoamide)/métabolisme , Pyruvate dehydrogenase acetyl-transferring kinase/métabolisme , Sulfures/métabolisme
11.
Tissue Cell ; 66: 101381, 2020 Oct.
Article de Anglais | MEDLINE | ID: mdl-32933704

RÉSUMÉ

Male infertility is a global problem in modern society of which capacitating defects are a major cause. Previous studies have demonstrated that Ca2+ ionophore A23187 can make mouse sperm capable of fertilizing in vitro, which may aid in clinical treatment of capacitating defects. However, the detailed role and mechanism of Ca2+ in the capacitating process are still unclear especially how A23187 quickly renders sperm immotile and inhibits cAMP/PKA-mediated phosphorylation. We report that A23187 induces a Ca2+ flux in the mitochondria enriched sperm tail and excess Ca2+ inhibits key metabolic enzymes involved in acetyl-CoA biosynthesis, TCA cycle and electron transport chain pathways resulting in reduced ATP and overall energy production, however this flux does not destroy the structure of the sperm tail. Due to the decrease in ATP production, which is the main phosphate group donator and the power of sperm, the sperm is rendered immobile and PKA-mediated phosphorylation is inhibited. Our study proposed a possible mechanism through which A23187 reduces sperm motility and PKA-mediated phosphorylation from ATP generation, thus providing basic data for exploring the functional roles of Ca2+ in sperm in the future.


Sujet(s)
Adénosine triphosphate/biosynthèse , A-23187/pharmacologie , Calcium/métabolisme , Cyclic AMP-Dependent Protein Kinases/métabolisme , Ionophores/pharmacologie , Mobilité des spermatozoïdes/effets des médicaments et des substances chimiques , Acétyl coenzyme A/biosynthèse , Animaux , Cycle citrique/effets des médicaments et des substances chimiques , Transport d'électrons/effets des médicaments et des substances chimiques , Métabolisme énergétique/effets des médicaments et des substances chimiques , Mâle , Potentiel de membrane mitochondriale/effets des médicaments et des substances chimiques , Souris , Modèles biologiques , Phosphorylation/effets des médicaments et des substances chimiques , Capacitation des spermatozoïdes/effets des médicaments et des substances chimiques , Flagelle du spermatozoïde/effets des médicaments et des substances chimiques , Flagelle du spermatozoïde/métabolisme , Flagelle du spermatozoïde/ultrastructure
12.
Int J Mol Sci ; 21(18)2020 Sep 16.
Article de Anglais | MEDLINE | ID: mdl-32947972

RÉSUMÉ

Primary liver cancer is predicted to be the sixth most common cancer and the fourth leading cause of cancer mortality worldwide. Recent studies identified nonalcoholic fatty liver disease (NAFLD) as the underlying cause in 13-38.2% of patients with hepatocellular carcinoma unrelated to viral hepatitis and alcohol abuse. NAFLD progresses to nonalcoholic steatohepatitis (NASH), which increases the risk for the development of liver fibrosis, cirrhosis, and hepatocellular carcinoma. NAFLD is characterized by dysregulation of lipid metabolism. In addition, lipid metabolism is effected not only in NAFLD, but also in a broad range of chronic liver diseases and tumor development. Cancer cells manipulate a variety of metabolic pathways, including lipid metabolism, in order to build up their own cellular components. Identifying tumor dependencies on lipid metabolism would provide options for novel targeting strategies. This review article summarizes the research evidence on metabolic reprogramming and focuses on lipid metabolism in NAFLD, NASH, fibrosis, and cancer. As alternative routes of acetyl-CoA production for fatty acid synthesis, topics on glutamine and acetate metabolism are included. Further, studies on small compound inhibitors targeting lipid metabolism are discussed. Understanding reprogramming strategies in liver diseases, as well as the visualization of the metabolism reprogramming networks, could uncover novel therapeutic options.


Sujet(s)
Acétates/métabolisme , Carcinome hépatocellulaire/métabolisme , Glutamine/métabolisme , Lipides/biosynthèse , Tumeurs du foie/métabolisme , Stéatose hépatique non alcoolique/métabolisme , Acétyl coenzyme A/biosynthèse , Acyltransferases/métabolisme , Essais cliniques comme sujet , Fatty acid desaturases/métabolisme , Acides gras/biosynthèse , Fibrose , Humains , Métabolisme lipidique/effets des médicaments et des substances chimiques , Voies et réseaux métaboliques , Transduction du signal , Protéines de liaison à l'élément de régulation des stérols/métabolisme
13.
Life Sci ; 258: 118240, 2020 Oct 01.
Article de Anglais | MEDLINE | ID: mdl-32781072

RÉSUMÉ

As a dicarboxylic acid with the structural formula HOOCCH (OH) COOH, tartronic acid is considered as an inhibitor of the transformation of carbohydrates into fat under fat-deficient diet conditions. However, the effect of tartronic acid on lipogenesis under high-fat diet conditions has yet to be established. In this work, we investigated the regulatory role of tartronic acid in lipogenesis in 3T3-L1 adipocytes and C57BL/6J mice. The results confirmed that tartronic acid promoted weight gain (without affecting food intake) and induced adipocyte hypertrophy in epididymal white adipose tissue and lipid accumulation in the livers of high-fat diet-induced obese mice. In vitro, tartronic acid promoted 3T3-L1 adipocyte differentiation by increasing the protein expression of FABP-4, PPARγ and SREBP-1. Moreover, the contents of both acetyl-CoA and malonyl-CoA were significantly upregulated by treatment with tartronic acid, while the protein expression of CPT-1ß were inhibited. In summary, we proved that tartronic acid promotes lipogenesis by serving as substrates for fatty acid synthesis and inhibiting CPT-1ß, providing a new perspective for the study of tartronic acid.


Sujet(s)
Acétyl coenzyme A/biosynthèse , Carnitine O-palmitoyltransferase/antagonistes et inhibiteurs , Lipogenèse/effets des médicaments et des substances chimiques , Malonyl coenzyme A/biosynthèse , Tartronates/pharmacologie , Régulation positive/effets des médicaments et des substances chimiques , Cellules 3T3-L1 , Animaux , Carnitine O-palmitoyltransferase/métabolisme , Alimentation riche en graisse/effets indésirables , Lipogenèse/physiologie , Mâle , Souris , Souris de lignée C57BL , Régulation positive/physiologie
14.
Gene ; 741: 144559, 2020 May 30.
Article de Anglais | MEDLINE | ID: mdl-32169630

RÉSUMÉ

The fungi in order Mortierellales are attractive producers for long-chain polyunsaturated fatty acids (PUFAs). Here, the genome sequencing and assembly of a novel strain of Mortierella sp. BCC40632 were done, yielding 65 contigs spanning of 49,964,116 total bases with predicted 12,149 protein-coding genes. We focused on the acetyl-CoA in relevant to its derived metabolic pathways for biosynthesis of macromolecules with biological functions, including PUFAs, eicosanoids and carotenoids. By comparative genome analysis between Mortierellales and Mucorales, the signature genetic characteristics of the arachidonic acid-producing strains, including Δ5-desaturase and GLELO-like elongase, were also identified in the strain BCC40632. Remarkably, this fungal strain contained only n-6 pathway of PUFA biosynthesis due to the absence of Δ15-desaturase or ω3-desaturase gene in contrast to other Mortierella species. Four putative enzyme sequences in the eicosanoid biosynthetic pathways were identified in the strain BCC40632 and others Mortierellale fungi, but were not detected in the Mucorales. Another unique metabolic trait of the Mortierellales was the inability in carotenoid synthesis as a result of the lack of phytoene synthase and phytoene desaturase genes. The findings provide a perspective in strain optimization for production of tailored-made products with industrial applications.


Sujet(s)
Acétyl coenzyme A/biosynthèse , Acide arachidonique/génétique , Génome fongique/génétique , Mortierella/métabolisme , Acétyl coenzyme A/génétique , Acide arachidonique/biosynthèse , Voies de biosynthèse/génétique , Fatty acid desaturases/génétique , Fatty acid elongases/génétique , Acides gras insaturés/génétique , Acides gras insaturés/métabolisme , Mortierella/génétique , Mucorales/génétique , Mucorales/métabolisme , Acide gamma linolénique/génétique , Acide gamma linolénique/métabolisme
15.
Sci Transl Med ; 11(510)2019 09 18.
Article de Anglais | MEDLINE | ID: mdl-31534021

RÉSUMÉ

Malaria eradication is critically dependent on new therapeutics that target resistant Plasmodium parasites and block transmission of the disease. Here, we report that pantothenamide bioisosteres were active against blood-stage Plasmodium falciparum parasites and also blocked transmission of sexual stages to the mosquito vector. These compounds were resistant to degradation by serum pantetheinases, showed favorable pharmacokinetic properties, and cleared parasites in a humanized mouse model of P. falciparum infection. Metabolomics revealed that coenzyme A biosynthetic enzymes converted pantothenamides into coenzyme A analogs that interfered with parasite acetyl-coenzyme A anabolism. Resistant parasites generated in vitro showed mutations in acetyl-coenzyme A synthetase and acyl-coenzyme A synthetase 11. Introduction and reversion of these mutations in P. falciparum using CRISPR-Cas9 gene editing confirmed the roles of these enzymes in the sensitivity of the malaria parasites to pantothenamides. These pantothenamide compounds with a new mode of action may have potential as drugs against malaria parasites.


Sujet(s)
Acétyl coenzyme A/biosynthèse , Antipaludiques/pharmacologie , Voies de biosynthèse/effets des médicaments et des substances chimiques , Acide pantothénique/analogues et dérivés , Acide pantothénique/pharmacologie , Plasmodium falciparum/métabolisme , Animaux , Antipaludiques/composition chimique , Antipaludiques/pharmacocinétique , Modèles animaux de maladie humaine , Résistance aux substances/effets des médicaments et des substances chimiques , Humains , Paludisme à Plasmodium falciparum/parasitologie , Paludisme à Plasmodium falciparum/transmission , Mâle , Souris de lignée BALB C , Mutation/génétique , Acide pantothénique/composition chimique , Parasitémie/traitement médicamenteux , Parasites/effets des médicaments et des substances chimiques , Parasites/métabolisme , Protéines de protozoaire/génétique , Reproduction asexuée/effets des médicaments et des substances chimiques , Résultat thérapeutique , Trophozoïtes/effets des médicaments et des substances chimiques , Trophozoïtes/métabolisme
16.
Nat Commun ; 10(1): 4255, 2019 09 18.
Article de Anglais | MEDLINE | ID: mdl-31534141

RÉSUMÉ

Caspase-10 belongs to the class of initiator caspases and is a close homolog of caspase-8. However, the lack of caspase-10 in mice and limited substrate repertoire restricts the understanding of its physiological functions. Here, we report that ATP-citrate lyase (ACLY) is a caspase-10 substrate. Caspase-10 cleaves ACLY at the conserved Asp1026 site under conditions of altered metabolic homeostasis. Cleavage of ACLY abrogates its enzymatic activity and suppresses the generation of acetyl-CoA, which is critical for lipogenesis and histone acetylation. Thus, caspase-10-mediated ACLY cleavage results in reduced intracellular lipid levels and represses GCN5-mediated histone H3 and H4 acetylation. Furthermore, decline in GCN5 activity alters the epigenetic profile, resulting in downregulation of proliferative and metastatic genes. Thus caspase-10 suppresses ACLY-promoted malignant phenotype. These findings expand the substrate repertoire of caspase-10 and highlight its pivotal role in inhibiting tumorigenesis through metabolic and epigenetic mechanisms.


Sujet(s)
ATP citrate (pro-S)-lyase/antagonistes et inhibiteurs , Carcinogenèse/anatomopathologie , Caspase 10/métabolisme , Épigenèse génétique/génétique , Tumeurs/anatomopathologie , Cellules A549 , Acétyl coenzyme A/biosynthèse , Acétylation , Animaux , Carcinogenèse/génétique , Lignée cellulaire tumorale , Prolifération cellulaire/génétique , Femelle , Cellules HCT116 , Cellules HEK293 , Histone/métabolisme , Humains , Lipogenèse/physiologie , Souris , Souris nude , Transplantation tumorale , Transplantation hétérologue , Facteurs de transcription CBP-p300/métabolisme
17.
Nat Immunol ; 20(9): 1186-1195, 2019 09.
Article de Anglais | MEDLINE | ID: mdl-31384058

RÉSUMÉ

Macrophages are activated during microbial infection to coordinate inflammatory responses and host defense. Here we find that in macrophages activated by bacterial lipopolysaccharide (LPS), mitochondrial glycerol 3-phosphate dehydrogenase (GPD2) regulates glucose oxidation to drive inflammatory responses. GPD2, a component of the glycerol phosphate shuttle, boosts glucose oxidation to fuel the production of acetyl coenzyme A, acetylation of histones and induction of genes encoding inflammatory mediators. While acute exposure to LPS drives macrophage activation, prolonged exposure to LPS triggers tolerance to LPS, where macrophages induce immunosuppression to limit the detrimental effects of sustained inflammation. The shift in the inflammatory response is modulated by GPD2, which coordinates a shutdown of oxidative metabolism; this limits the availability of acetyl coenzyme A for histone acetylation at genes encoding inflammatory mediators and thus contributes to the suppression of inflammatory responses. Therefore, GPD2 and the glycerol phosphate shuttle integrate the extent of microbial stimulation with glucose oxidation to balance the beneficial and detrimental effects of the inflammatory response.


Sujet(s)
Glucose/métabolisme , Glycerolphosphate dehydrogenase/métabolisme , Activation des macrophages/immunologie , Macrophages/immunologie , Macrophages/métabolisme , Acétyl coenzyme A/biosynthèse , Acétylation , Animaux , Femelle , Histone/métabolisme , Inflammation/anatomopathologie , Lipopolysaccharides , Macrophages/cytologie , Mâle , Souris , Souris de lignée C57BL , Oxydoréduction
18.
Microb Cell Fact ; 18(1): 130, 2019 Aug 06.
Article de Anglais | MEDLINE | ID: mdl-31387584

RÉSUMÉ

BACKGROUND: Acetyl-CoA is an important metabolic intermediate and serves as an acetylation precursor for the biosynthesis of various value-added acetyl-chemicals. Acetyl-CoA can be produced from glucose, acetate, or fatty acids via metabolic pathways in Escherichia coli. Although glucose is an efficient carbon source for acetyl-CoA production, the pathway from acetate to acetyl-CoA is the shortest and fatty acids can produce acetyl-CoA through fatty acid oxidation along with abundant NADH and FADH2. In this study, metabolically engineered E. coli strains for efficiently supplying acetyl-CoA from glucose, acetate, and fatty acid were constructed and applied in one-step biosynthesis of N-acetylglutamate (NAG) from glutamate and acetyl-CoA. RESULTS: A metabolically engineered E. coli strain for NAG production was constructed by overexpressing N-acetylglutamate synthase from Kitasatospora setae in E. coli BW25113 with argB and argA knockout. The strain was further engineered to utilize glucose, acetate, and fatty acid to produce acetyl-CoA. When glucose was used as a carbon source, the combined mutants of ∆ptsG::glk, ∆galR::zglf, ∆poxB::acs, ∆ldhA, and ∆pta were more efficient for supplying acetyl-CoA. The acetyl-CoA synthetase (ACS) pathway and acetate kinase-phosphate acetyltransferase (ACK-PTA) pathway from acetate to acetyl-CoA were investigated, and the ACK-PTA pathway showed to be more efficient for supplying acetyl-CoA. When fatty acid was used as a carbon source, acetyl-CoA supply was improved by deletion of fadR and constitutive expression of fadD under the strong promoter CPA1. Comparison of acetyl-CoA supply from glucose, acetate and palmitic acid revealed that a higher conversion rate of glutamate (98.2%) and productivity (an average of 6.25 mmol/L/h) were obtained when using glucose as a carbon source. The results also demonstrated the great potential of acetate and fatty acid to supply acetyl-CoA, as the molar conversion rate of glutamate was more than 80%. CONCLUSIONS: Metabolically engineered E. coli strains were developed for NAG production. The metabolic pathways of acetyl-CoA from glucose, acetate, or fatty acid were optimized for efficient acetyl-CoA supply to enhance NAG production. The metabolic strategies for efficient acetyl-CoA supply used in this study can be exploited for other chemicals that use acetyl-CoA as a precursor or when acetylation is involved.


Sujet(s)
Acétyl coenzyme A/biosynthèse , Carbone/métabolisme , Escherichia coli/métabolisme , Génie métabolique , Acétates/métabolisme , Voies de biosynthèse , Acides gras/métabolisme , Glucose/métabolisme
19.
J Biol Chem ; 294(30): 11568-11578, 2019 07 26.
Article de Anglais | MEDLINE | ID: mdl-31186346

RÉSUMÉ

Cardiolipin (CL) is the signature phospholipid of mitochondrial membranes. Although it has long been known that CL plays an important role in mitochondrial bioenergetics, recent evidence in the yeast model indicates that CL is also essential for intermediary metabolism. To gain insight into the function of CL in energy metabolism in mammalian cells, here we analyzed the metabolic flux of [U-13C]glucose in a mouse C2C12 myoblast cell line, TAZ-KO, which is CL-deficient because of CRISPR/Cas9-mediated knockout of the CL-remodeling enzyme tafazzin (TAZ). TAZ-KO cells exhibited decreased flux of [U-13C]glucose to [13C]acetyl-CoA and M2 and M4 isotopomers of tricarboxylic acid (TCA) cycle intermediates. The activity of pyruvate carboxylase, the predominant enzyme for anaplerotic replenishing of the TCA cycle, was elevated in TAZ-KO cells, which also exhibited increased sensitivity to the pyruvate carboxylase inhibitor phenylacetate. We attributed a decreased carbon flux from glucose to acetyl-CoA in the TAZ-KO cells to a ∼50% decrease in pyruvate dehydrogenase (PDH) activity, which was observed in both TAZ-KO cells and cardiac tissue from TAZ-KO mice. Protein-lipid overlay experiments revealed that PDH binds to CL, and supplementing digitonin-solubilized TAZ-KO mitochondria with CL restored PDH activity to WT levels. Mitochondria from TAZ-KO cells exhibited an increase in phosphorylated PDH, levels of which were reduced in the presence of supplemented CL. These findings indicate that CL is required for optimal PDH activation, generation of acetyl-CoA, and TCA cycle function, findings that link the key mitochondrial lipid CL to TCA cycle function and energy metabolism.


Sujet(s)
Cardiolipides/physiologie , Cycle citrique , Lipides/biosynthèse , Mitochondries/métabolisme , Complexe du pyruvate déshydrogénase/métabolisme , Acétyl coenzyme A/biosynthèse , Acyltransferases , Animaux , Carbone/métabolisme , Lignée cellulaire , Métabolisme énergétique , Activation enzymatique , Souris , Souris knockout , Pyruvate carboxylase/métabolisme , Facteurs de transcription/génétique
20.
Trends Cell Biol ; 29(9): 695-703, 2019 09.
Article de Anglais | MEDLINE | ID: mdl-31160120

RÉSUMÉ

Acetate and the related metabolism of acetyl-coenzyme A (acetyl-CoA) confer numerous metabolic functions, including energy production, lipid synthesis, and protein acetylation. Despite its importance as a nutrient for cellular metabolism, its source has been unclear. Recent studies have provided evidence to support the existence of a de novo pathway for acetate production derived from pyruvate, the end product of glycolysis. This mechanism of pyruvate-derived acetate generation could have far-reaching implications for the regulation of central carbon metabolism. In this Opinion, we discuss our current understanding of acetate metabolism in the context of cell-autonomous metabolic regulation, cell-cell interactions, and systemic physiology. Applications relevant to health and disease, particularly cancer, are emphasized.


Sujet(s)
Acétates/métabolisme , Glucose/métabolisme , Tumeurs/métabolisme , Acétyl coenzyme A/biosynthèse , Acétyl coenzyme A/métabolisme , Acétylation , Glycolyse , Humains , Lipogenèse , Mitochondries/métabolisme
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