The morphogenesis of different giant viruses as additional evidence for a common origin of Nucleocytoviricota.

Large and giant DNA viruses are a monophyletic group constituting the recently established phylum Nucleocytoviricota. The virus particle morphogenesis of these viruses exhibit striking similarities. Viral factories are established in the host cells where new virions are assembled by recruiting host membranes, forming an inner lipid layer. An outer protein layer starts as a lamellar structure, commonly referred to as viral crescents, coded by the major capsid protein gene. Also, these viruses have a conserved ATPase-coding gene related to genome encapsidation. Similar properties are described for tectiviruses, putative small ancestors of giant viruses. Here we review the morphogenesis of giant viruses and discuss how the process similarities constitute additional evidence to the common origin of Nucleocytoviricota.

Structure and physiology of giant DNA viruses.

Although giant viruses have existed for millennia and possibly exerted great evolutionary influence in their environment. Their presence has only been noticed by virologists recently with the discovery of Acanthamoeba polyphaga mimivirus in 2003. Its virion with a diameter of 500 nm and its genome larger than 1 Mpb shattered preconceived standards of what a virus is and triggered world-wide prospection studies. Thanks to these investigations many giant virus families were discovered, each with its own morphological peculiarities and genomes ranging from 0.4 to 2.5 Mpb that possibly encode more than 400 viral proteins. This review aims to present the morphological diversity, the different aspects observed in host-virus interactions during replication, as well as the techniques utilized during their investigation.

Prevalence of contamination by intestinal parasites in vegetables (Lactuca sativa L. and Coriandrum sativum L.) sold in markets in Belém, northern Brazil.

BACKGROUND: Previous studies have recorded a high prevalence of intestinal parasites in lettuce (Lactuca sativa L.) and coriander (Coriandrum sativum L.) destined for human consumption. This study determined the prevalence of contamination by intestinal parasites in these two plants sold in two street markets and two supermarkets in the city of Belém, northern Brazil. RESULTS: A total of 200 plant samples were analyzed (100 of each species). The samples were collected randomly between August and October 2018, examined by the spontaneous sedimentation method with two washes, and stored for 24 h. The analysis found that 89% (89/100) of the lettuce samples and 86% (86/100) of the coriander samples were contaminated. Polyparasitism was more frequent in lettuce, but monoparasitism predominated in the coriander. A total of 226 intestinal parasites were found in the lettuce, with a predominance of non-pathogenic parasites in the supermarket samples and more pathogenic parasites in the samples from street markets. In the coriander samples, 172 intestinal parasites were identified, with a predominance of pathogenic parasites in samples from both types of market. In the case of the protozoans, the most prevalent species was Endolimax nana, followed by Blastocystis hominis, in both vegetables. In the helminths, hookworms predominated in the lettuce, and Trichuris trichiura in the coriander. CONCLUSIONS: These results highlight the need for the monitoring of parasite contamination in vegetables destined for human consumption. Public health initiatives should include educational campaigns on the importance of disinfecting vegetables prior to consumption. © 2020 Society of Chemical Industry.

[Spatial distribution of intestinal parasites in the City of La Plata, Argentina]. / Distribución espacial de las parasitosis intestinales en la Ciudad de La Plata, Argentina.

Parasitosis analysis at regional levels is simplified by the use of the Geographic Information System (GIS), which enables the identification of areas with different degrees of vulnerability. We analyzed the spatial distribution of intestinal parasites in La Plata district and their relationship with socio-environmental conditions in order to identify areas with different degrees of epidemiological risk. An epidemiological survey was completed; stool samples were collected and analyzed by Ritchie's method. Levels of precariousness and vulnerability (Iv rate) were calculated and compared to the parasitological results. Parasitological and environmental analysis were carried out on a total of 653 individuals, of whom 585 (89.6%) were children and 68 (10.4%) adults. The analysis indicated that the most vulnerable (Iv = 3-4) were those located in areas with less access to urban infrastructure services. The Iv was strongly associated with the overall prevalence of intestinal parasitosis and the 4 pathogenic species related to the fecal contamination of the environment: Trichuris trichiura, Ascaris lumbricoides, Hymenolepis nana and Giardia lamblia (p < 0.01). On the other hand, Enterobius vermicularis, a parasite not related to the sanitary condition of its host, was not associated with the Iv. Statistical association between poverty and parasitosis was noted; the greater the Iv, higher the incidence of parasites (p < 0.01). GIS allowed zoning socio-environmental variables in an increasing gradient of unfavorable conditions and their relationship to the presence of pathogenic species. The continuity of these studies in different regions of Argentina contributes to the determination of health risk areas.

Distribución espacial de las parasitosis intestinales en la ciudad de La Plata, Argentina

El análisis de las parasitosis a diferentes escalas (regional, local) se facilita por el Geographic Information System (GIS), que permite identificar áreas con distinto grado de vulnerabilidad. El objetivo del trabajo fue analizar la distribución espacial de las parasitosis intestinales en el partido de La Plata, estableciendo su relación con las condiciones socio-ambientales para identificar áreas con diferente riesgo epidemiológico. Se completó una encuesta epidemiológica y se tomaron muestras seriadas de materia fecal, analizadas por la técnica de Ritchie. Se calcularon niveles de precariedad y vulnerabilidad (Iv), y se compararon con los resultados parasitológicos. Se analizaron parasitológica y ambientalmente 653 personas, de las cuales 585 (89.6%) eran niños y 68 (10.4%) adultos. El análisis indicó que los más vulnerables (Iv = 3-4) estaban en el sector con menor acceso a servicios de infraestructura urbana. El índice se encontró fuertemente asociado a la prevalencia total de parasitosis intestinales y a las 4 especies patógenas asociadas a la contaminación fecal del ambiente: Trichuris trichiura, Ascaris lumbricoides, Hymenolepis nana y Giardia lamblia (p < 0.01). Enterobius vermicularis, parásito no vinculado a la condición sanitaria de sus hospedadores, no se asoció al Iv. Hubo asociación estadística entre precariedad y parasitosis y se halló que a mayor Iv mayor frecuencia de parasitosis (p < 0.01). El uso de GIS permitió zonificar las variables socioambientales en un gradiente creciente de condiciones desfavorables y su relación con la presencia de especies patógenas. La continuidad de estos estudios en diferentes regiones de Argentina contribuye a la determinación de áreas en riesgo sanitario.

Parasitosis analysis at regional levels is simplified by the use of the Geographic Information System (GIS), which enables the identification of areas with different degrees of vulnerability. We analyzed the spatial distribution of intestinal parasites in La Plata district and their relationship with socio-environmental conditions in order to identify areas with different degrees of epidemiological risk. An epidemiological survey was completed; stool samples were collected and analyzed by Ritchie's method. Levels of precariousness and vulnerability (Iv rate) were calculated and compared to the parasitological results. Parasitological and environmental analysis were carried out on a total of 653 individuals, of whom 585 (89.6%) were children and 68 (10.4%) adults. The analysis indicated that the most vulnerable (Iv = 3-4) were those located in areas with less access to urban infrastructure services. The Iv was strongly associated with the overall prevalence of intestinal parasitosis and the 4 pathogenic species related to the fecal contamination of the environment: Trichuris trichiura, Ascaris lumbricoides, Hymenolepis nana and Giardia lamblia (p < 0.01). On the other hand, Enterobius vermicularis, a parasite not related to the sanitary condition of its host, was not associated with the Iv. Statistical association between poverty and parasitosis was noted; the greater the Iv, higher the incidence of parasites (p < 0.01). GIS allowed zoning socio-environmental variables in an increasing gradient of unfavorable conditions and their relationship to the presence of pathogenic species. The continuity of these studies in different regions of Argentina contributes to the determination of health risk areas.

Could the canopy structure of bryophytes serve as an indicator of microbial biodiversity? A test for testate amoebae and microcrustaceans from a subtropical cloud forest in Dominican Republic.

The mechanisms that ultimately regulate the diversity of microbial eukaryotic communities in bryophyte ecosystems remain a contentious topic in microbial ecology. Although there is robust consensus that abiotic factors, such as water chemistry of the bryophyte and pH, explain a significant proportion of protist and microcrustacean diversity, there is no systematic assessment of the role of bryophyte habitat complexity on such prominent microbial groups. Water-holding capacity is correlated with bryophyte morphology and canopy structure. Similarly, canopy structure explains biodiversity dynamics of the macrobiota suggesting that canopy structure may also be a potential parameter for understanding microbial diversity. Canopy roughness of the dominant bryophyte species within the Bahoruco Cloud Forest, Cachote, Dominican Republic, concomitant with their associated diversity of testate amoebae and microcrustaceans was estimated to determine whether canopy structure could be added to the list of factors explaining microbial biodiversity in bryophytes. We hypothesized that smooth (with high moisture content) canopies will have higher species richness, density, and biomass of testate amoebae and higher richness and density of microcrustaceans than rough (desiccation-prone) canopies. For testate amoebae, we found 83 morphospecies with relative low abundances. Species richness and density differed among bryophytes with different bryophyte canopy structures and based on non-metric multidimensional scaling, canopy roughness explained 25% of the variation in species composition although not as predicted. Acroporium pungens (low roughness, LR) had the lowest species richness (2 ± 0.61 SD per gram dry weight bryophyte), and density (2.1 ± 0.61 SD individual per gram of dry weight bryophyte); whereas Thuidium urceolatum (high roughness) had the highest richness (24 ± 10.82 SD) and density (94 ± 64.30 SD). The fact that the bryophyte with the highest roughness had the highest levels of diversity for testate amoebae suggests that moisture levels at the level of the bryophyte canopy may not represent a biodiversity driver in a cloud forest with high relative humidity; however, high roughness could generate a dynamic and fluctuating moisture environment with concomitant alternating microbial communities. A total of 26 microcrustacean morphospecies were found across 11 bryophytes; however, no bryophyte canopy effect was detected on their richness and density. Microcrustacean mean density was low ranging from less than one individual per 50 cm2 of bryophyte in Leucobryum (LR) to a maximum of 6 ± 3.37 SD individuals/50 cm2 in Monoclea (LR). This lack of pattern suggests that possible explanatory variables may be related to larger scale processes than those examined in this study.

Protozoarios en aguas superficiales y muestras fecales de individuos de poblaciones rurales del municipio Montes, estado Sucre, Venezuela / Protozoans in superficial waters and faecal samples of individuals of rural populations of the Montes municipality, Sucre state, Venezuela

En el estado Sucre, el Río Manzanares se ve amenazado por actividades domésticas, agrícolas e industriales originadas por el hombre, convirtiéndose en factor de riesgo ambiental para sus habitantes. En este sentido se planteó evaluar la presencia de protozoarios en aguas superficiales de afluentes del Río Manzanares (Río Orinoco, Quebrada Seca, Río San Juan), municipio Montes, estado Sucre, Venezuela, así como también el análisis de muestras fecales de los habitantes de poblados aledaños. Se recolectaron muestras de aguas superficiales de los afluentes en estudio y fecales entre mayo 2006-abril 2007. Las muestras de aguas superficiales se procesaron con sedimentación por centrifugación, floculación y tinciones de Kinyoun y tricrómica; las muestras fecales se sometieron a examen directo con solución salina fisiológica y lugol, Ritchie modificado y las coloraciones antes mencionadas. Los protozoarios observados con mayor frecuencia en las aguas superficiales en los afluentes fueron: Amebas, Blastocystis sp., Endolimax sp., Chilomastix sp. y Giardia sp. Mientras que Blastocystis hominis, Endolimax nana y Entaomeba coli fueron los de mayor frecuencia observada en las muestras fecales. Los habitantes de Orinoco La Peña resultaron ser los más afectados por las infecciones parasitarias (77,60%), seguido de Río San Juan con 46,63%, y Quebrada Seca con 39,49%. La presencia de protozoarios patógenos y no patógenos en las aguas superficiales demuestra la contaminación fecal de los afluentes evaluados, por lo que representa un foco de infección permanente para los individuos que viven en las cercanías de estas aguas, esto se refleja por la observación de los mismos parásitos en ambas muestras.

In Sucre state, the Manzanares river is threatened by domestic, agricultural and industrial activities, becoming an environmental risk factor for its inhabitants. In this sense, the presence of protozoans in superficial waters of tributaries of the Manzanares river (Orinoco river, Quebrada Seca, San Juan river), Montes municipality, Sucre state, as well as the analysis of faecal samples from inhabitants of towns bordering these tributaries were evaluated. We collected faecal and water samples from may 2006 through april 2007. The superficial water samples were processed after centrifugation by the direct examination and floculation, using lugol, modified Kinyoun and trichromic colorations. Fecal samples where analyzed by direct examination with physiological saline solution and the modified Ritchie concentration method and using the other colorations techniques above mentioned. The most frequently observed protozoans in superficial waters in the three tributaries were: Amoebas, Blastocystis sp, Endolimax sp., Chilomastix sp. and Giardia sp. Whereas in faecal samples, Blastocystis hominis, Endolimax nana and Entaomeba coli had the greatest frequencies in the three communities. The inhabitants of Orinoco La Peña turned out to be most susceptible to these parasitic infections (77.60%), followed by San Juan River (46.63%) and Quebrada Seca (39.49%). The presence of pathogenic and nonpathogenic protozoans in superficial waters demonstrates the faecal contamination of the tributaries, representing a constant focus of infection for their inhabitants, inferred by the observation of the same species in both types of samples.

[Protozoans in superficial waters and faecal samples of individuals of rural populations of the Montes municipality, Sucre state, Venezuela]. / Protozoarios en aguas superficiales y muestras fecales de individuos de poblaciones rurales del municipio Montes, estado Sucre, Venezuela.

In Sucre state, the Manzanares river is threatened by domestic, agricultural and industrial activities, becoming an environmental risk factor for its inhabitants. In this sense, the presence of protozoans in superficial waters of tributaries of the Manzanares river (Orinoco river, Quebrada Seca, San Juan river), Montes municipality, Sucre state, as well as the analysis of faecal samples from inhabitants of towns bordering these tributaries were evaluated. We collected faecal and water samples from may 2006 through april 2007. The superficial water samples were processed after centrifugation by the direct examination and floculation, using lugol, modified Kinyoun and trichromic colorations. Fecal samples where analyzed by direct examination with physiological saline solution and the modified Ritchie concentration method and using the other colorations techniques above mentioned. The most frequently observed protozoans in superficial waters in the three tributaries were: Amoebas, Blastocystis sp, Endolimax sp., Chilomastix sp. and Giardia sp. Whereas in faecal samples, Blastocystis hominis, Endolimax nana and Entaomeba coli had the greatest frequencies in the three communities. The inhabitants of Orinoco La Peña turned out to be most susceptible to these parasitic infections (77.60%), followed by San Juan River (46.63%) and Quebrada Seca (39.49%). The presence of pathogenic and nonpathogenic protozoans in superficial waters demonstrates the faecal contamination of the tributaries, representing a constant focus of infection for their inhabitants, inferred by the observation of the same species in both types of samples.

Cultivation and properties of Echinamoeba thermarum n. sp., an extremely thermophilic amoeba thriving in hot springs.

Here we describe a new, extremely thermophilic amoeba growing between 33 degrees C and 57 degrees C ( Topt.=50 degrees C). Isolates had been obtained from hot springs at Agnano Terme (Italy), Yellowstone National Park (USA), Kamchatka (Russia), and the Arenal Volcano (Costa Rica). They could be cultured monoxenically on a thermophilic alpha-proteobacterium. The morphology of the amoeba was studied using a microscope situated under a heatable polyacrylate hood. At 50 degrees C, the cells appeared flat with an irregular triangular or elongate shape, sometimes exhibiting fine spine-like subpseudopodia. On average, they were 22 microm long and 11 microm wide and had one nucleus with a central nucleolus. Based on morphology and on SSU rRNA comparisons, the amoeba belonged to the genus Echinamoeba, where it represents a new species. Referring to its extremely thermophilic lifestyle and its hydrothermal habitat, we name it E. thermarum.