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1.
J Virol ; 97(10): e0115423, 2023 10 31.
Article de Anglais | MEDLINE | ID: mdl-37772823
2.
Commun Biol ; 5(1): 1265, 2022 11 18.
Article de Anglais | MEDLINE | ID: mdl-36400835

RÉSUMÉ

Antibodies against the carboxy-terminal section of the membrane-proximal external region (C-MPER) of the HIV-1 envelope glycoprotein (Env) are considered as nearly pan-neutralizing. Development of vaccines capable of producing analogous broadly neutralizing antibodies requires deep understanding of the mechanism that underlies C-MPER recognition in membranes. Here, we use the archetypic 10E8 antibody and a variety of biophysical techniques including single-molecule approaches to study the molecular recognition of C-MPER in membrane mimetics. In contrast to the assumption that an interfacial MPER helix embodies the entire C-MPER epitope recognized by 10E8, our data indicate that transmembrane domain (TMD) residues contribute to binding affinity and specificity. Moreover, anchoring to membrane the helical C-MPER epitope through the TMD augments antibody binding affinity and relieves the effects exerted by the interfacial MPER helix on the mechanical stability of the lipid bilayer. These observations support that addition of TMD residues may result in more efficient and stable anti-MPER vaccines.


Sujet(s)
VIH-1 (Virus de l'Immunodéficience Humaine de type 1) , VIH-1 (Virus de l'Immunodéficience Humaine de type 1)/composition chimique , Protéine d'enveloppe gp41 du VIH/composition chimique , Protéine d'enveloppe gp41 du VIH/métabolisme , Anticorps anti-VIH/composition chimique , Épitopes , Double couche lipidique/composition chimique
3.
Sci Adv ; 8(18): eabm3948, 2022 05 06.
Article de Anglais | MEDLINE | ID: mdl-35507661

RÉSUMÉ

Broadly HIV-1-neutralizing VRC01-class antibodies bind the CD4-binding site of Env and contain VH1-2*02-derived heavy chains paired with light chains expressing five-amino acid-long CDRL3s. Their unmutated germline forms do not recognize HIV-1 Env, and their lack of elicitation in human clinical trials could be due to the absence of activation of the corresponding naïve B cells by the vaccine immunogens. To address this point, we examined Env-specific B cell receptor sequences from participants in the HVTN 100 clinical trial. Of all the sequences analyzed, only one displayed homology to VRC01-class antibodies, but the corresponding antibody (FH1) recognized the C1C2 gp120 domain. For FH1 to switch epitope recognition to the CD4-binding site, alterations in the CDRH3 and CDRL3 were necessary. Only germ line-targeting Env immunogens efficiently activated VRC01 B cells, even in the presence of FH1 B cells. Our findings support the use of these immunogens to activate VRC01 B cells in humans.


Sujet(s)
VIH-1 (Virus de l'Immunodéficience Humaine de type 1) , Vaccins , Anticorps neutralisants , Anticorps neutralisants à large spectre , Anticorps anti-VIH/composition chimique , Humains , Similitude de séquences
4.
Bioconjug Chem ; 33(5): 807-820, 2022 05 18.
Article de Anglais | MEDLINE | ID: mdl-35470665

RÉSUMÉ

Dense glycosylation and the trimeric conformation of the human immunodeficiency virus-1 (HIV-1) envelope protein limit the accessibility of some cellular glycan processing enzymes and end up with high-mannose-type N-linked glycans on the envelope spike, among which the Man5GlcNAc2 structure occupies a certain proportion. The Man5GlcNAc2 glycan composes the binding sites of some potent broadly neutralizing antibodies, and some lectins that can bind Man5GlcNAc2 show HIV-neutralizing activity. Therefore, Man5GlcNAc2 is a potential target for HIV-1 vaccine development. Herein, a highly convergent and effective strategy was developed for the synthesis of Man5 and its monofluoro-modified, trifluoro-modified, and S-linked analogues. We coupled these haptens to carrier protein CRM197 and evaluated the immunogenicity of the glycoconjugates in mice. The serological assays showed that the native Man5 conjugates failed to induce Man5-specific antibodies in vivo, while the modified analogue conjugates induced stronger antibody responses. However, these antibodies could not bind the native gp120 antigen. These results demonstrated that the immune tolerance mechanism suppressed the immune responses to Man5-related structures and the conformation of glycan epitopes on the synthesized glycoconjugates was distinct from that of native glycan epitopes on gp120.


Sujet(s)
VIH-1 (Virus de l'Immunodéficience Humaine de type 1) , Vaccins , Animaux , Anticorps neutralisants , Épitopes/composition chimique , Glycoconjugués/métabolisme , Anticorps anti-VIH/composition chimique , Protéine d'enveloppe gp120 du VIH/métabolisme , VIH-1 (Virus de l'Immunodéficience Humaine de type 1)/métabolisme , Humains , Souris , Polyosides/composition chimique
5.
Commun Biol ; 5(1): 291, 2022 03 31.
Article de Anglais | MEDLINE | ID: mdl-35361878

RÉSUMÉ

The early humoral immune response to acute HIV-1 infection is largely non-neutralizing. The principal target of these antibodies is the primary immunodominant region (PID) on the gp41 fusion protein. The PID is a highly conserved 15-residue region displayed on the surface of HIV-1 virions. In this study, we analyzed the humoral determinants of HIV-1 gp41 PID binding using biophysical, structural, and computational methods. In complex with a patient-derived near-germline antibody fragment, the PID motif adopts an elongated random coil, whereas the PID bound to affinity-matured Fab adopts a strand-turn-helix conformation. Molecular dynamics simulations showed that the PID is structurally plastic suggesting that the PID can form an ensemble of structural states recognized by various non-neutralizing antibodies, facilitating HIV-1 immunodominance observed in acute and chronic HIV-1 infections. An improved understanding of how the HIV-1 gp41 PID misdirects the early humoral response should guide the development of an effective HIV-1 vaccine.


Sujet(s)
VIH-1 (Virus de l'Immunodéficience Humaine de type 1) , Anticorps anti-VIH/composition chimique , Protéine d'enveloppe gp41 du VIH/composition chimique , Protéine d'enveloppe gp41 du VIH/métabolisme , VIH-1 (Virus de l'Immunodéficience Humaine de type 1)/composition chimique , Humains , Épitopes immunodominants , Conformation des protéines
6.
J Virol ; 96(8): e0166821, 2022 04 27.
Article de Anglais | MEDLINE | ID: mdl-35343783

RÉSUMÉ

Binding to the receptor, CD4, drives the pretriggered, "closed" (state-1) conformation of the human immunodeficiency virus type 1 (HIV-1) envelope glycoprotein (Env) trimer into more "open" conformations (states 2 and 3). Broadly neutralizing antibodies, which are elicited inefficiently, mostly recognize the state-1 Env conformation, whereas the more commonly elicited poorly neutralizing antibodies recognize states 2/3. HIV-1 Env metastability has created challenges for defining the state-1 structure and developing immunogens mimicking this labile conformation. The availability of functional state-1 Envs that can be efficiently cross-linked at lysine and/or acidic amino acid residues might assist these endeavors. To that end, we modified HIV-1AD8 Env, which exhibits an intermediate level of triggerability by CD4. We introduced lysine/acidic residues at positions that exhibit such polymorphisms in natural HIV-1 strains. Env changes that were tolerated with respect to gp120-gp41 processing, subunit association, and virus entry were further combined. Two common polymorphisms, Q114E and Q567K, as well as a known variant, A582T, additively rendered pseudoviruses resistant to cold, soluble CD4, and a CD4-mimetic compound, phenotypes indicative of stabilization of the pretriggered state-1 Env conformation. Combining these changes resulted in two lysine-rich HIV-1AD8 Env variants (E.2 and AE.2) with neutralization- and cold-resistant phenotypes comparable to those of natural, less triggerable tier 2/3 HIV-1 isolates. Compared with these and the parental Envs, the E.2 and AE.2 Envs were cleaved more efficiently and exhibited stronger gp120-trimer association in detergent lysates. These highly cross-linkable Envs enriched in a pretriggered conformation should assist characterization of the structure and immunogenicity of this labile state. IMPORTANCE The development of an efficient vaccine is critical for combating HIV-1 infection worldwide. However, the instability of the pretriggered shape (state 1) of the viral envelope glycoprotein (Env) makes it difficult to raise neutralizing antibodies against HIV-1. Here, by introducing multiple changes in Env, we derived two HIV-1 Env variants that are enriched in state 1 and can be efficiently cross-linked to maintain this shape. These Env complexes are more stable in detergent, assisting their purification. Thus, our study provides a path to a better characterization of the native pretriggered Env, which should assist vaccine development.


Sujet(s)
Vaccins contre le SIDA , Infections à VIH , VIH-1 (Virus de l'Immunodéficience Humaine de type 1) , Produits du gène env du virus de l'immunodéficience humaine , Vaccins contre le SIDA/génétique , Vaccins contre le SIDA/immunologie , Anticorps neutralisants/immunologie , Détergents , Glycoprotéines/composition chimique , Glycoprotéines/immunologie , Anticorps anti-VIH/composition chimique , Anticorps anti-VIH/métabolisme , Protéine d'enveloppe gp120 du VIH/génétique , Infections à VIH/prévention et contrôle , VIH-1 (Virus de l'Immunodéficience Humaine de type 1)/composition chimique , VIH-1 (Virus de l'Immunodéficience Humaine de type 1)/génétique , VIH-1 (Virus de l'Immunodéficience Humaine de type 1)/immunologie , Humains , Lysine , Conformation des protéines , Produits du gène env du virus de l'immunodéficience humaine/composition chimique , Produits du gène env du virus de l'immunodéficience humaine/génétique , Produits du gène env du virus de l'immunodéficience humaine/immunologie
7.
Trends Microbiol ; 30(9): 866-881, 2022 09.
Article de Anglais | MEDLINE | ID: mdl-35279348

RÉSUMÉ

Glycans are repeating carbohydrate structures added as post-translational modifications (PTMs) to proteins, forming glycoproteins. Self-glycans found on human cells, and viral glycoproteins produced in host cells, are generally weakly immunogenic, which is necessary to avoid autoimmunity. This feature is exploited by many pathogenic viruses, which glycosylate surface proteins to evade or reduce immune recognition. The HIV type-1 (HIV-1) envelope glycoprotein (Env) is heavily glycosylated, which broadly acts to shield neutralisation-relevant protein surfaces with immunorecessive self-glycans to hinder B cell recognition. However, a small subset of HIV-1-infected individuals develops potent broadly neutralising antibodies (bnAbs), many of which directly engage the glycan shield. This provides hope that such antibodies could be elicited via vaccination and help to provide protective immunity. However, HIV-1 vaccine candidates have thus far failed to fully recapitulate such glycan-specific neutralising responses. In this review we consider the fundamental glycoimmunology and structural biology that underpin glycans in antibody evasion and as antibody targets and discuss potential approaches to harness glycan targeting for HIV-1 vaccine design.


Sujet(s)
Infections à VIH , VIH-1 (Virus de l'Immunodéficience Humaine de type 1) , Anticorps neutralisants , Glycoprotéines/métabolisme , Anticorps anti-VIH/composition chimique , Anticorps anti-VIH/métabolisme , Humains , Polyosides/métabolisme , Produits du gène env du virus de l'immunodéficience humaine/métabolisme
8.
Chembiochem ; 23(7): e202200061, 2022 04 05.
Article de Anglais | MEDLINE | ID: mdl-35104013

RÉSUMÉ

Oligomannose-type glycans on the spike protein of HIV-1 constitute relevant epitopes to elicit broadly neutralizing antibodies (bnAbs). Herein we describe an improved synthesis of α- and ß-linked hepta- and nonamannosyl ligands that were subsequently converted into BSA and CRM197 neoglycoconjugates. We assembled the ligands from anomeric 3-azidopropyl spacer glycosides from select 3-O-protected thiocresyl mannoside donors. Chain extensions were achieved using [4+3] or [4+5] block synthesis of thiocresyl and trichloroacetimidate glycosyl donors. Subsequent global deprotection generated the 3-aminopropyl oligosaccharide ligands. ELISA binding data obtained with the ß-anomeric hepta- and nonamannosyl conjugates with a selection of HIV-1 bnAbs showed comparable binding of both mannosyl ligands by Fab fragments yet lesser binding of the nonasaccharide conjugate by the corresponding IgG antibodies. These results support previous observations that a complete Man9 structure might not be the preferred antigenic binding motif for some oligomannose-specific antibodies, and have implications for glycoside designs to elicit oligomannose-targeted HIV-1-neutralizing antibodies.


Sujet(s)
VIH-1 (Virus de l'Immunodéficience Humaine de type 1) , Anticorps neutralisants , Épitopes/composition chimique , Anticorps anti-VIH/composition chimique , Humains , Ligands , Mâle
9.
Proc Natl Acad Sci U S A ; 119(4)2022 01 25.
Article de Anglais | MEDLINE | ID: mdl-35064083

RÉSUMÉ

Deep mining of B cell repertoires of HIV-1-infected individuals has resulted in the isolation of dozens of HIV-1 broadly neutralizing antibodies (bNAbs). Yet, it remains uncertain whether any such bNAbs alone are sufficiently broad and potent to deploy therapeutically. Here, we engineered HIV-1 bNAbs for their combination on a single multispecific and avid molecule via direct genetic fusion of their Fab fragments to the human apoferritin light chain. The resulting molecule demonstrated a remarkable median IC50 value of 0.0009 µg/mL and 100% neutralization coverage of a broad HIV-1 pseudovirus panel (118 isolates) at a 4 µg/mL cutoff-a 32-fold enhancement in viral neutralization potency compared to a mixture of the corresponding HIV-1 bNAbs. Importantly, Fc incorporation on the molecule and engineering to modulate Fc receptor binding resulted in IgG-like bioavailability in vivo. This robust plug-and-play antibody design is relevant against indications where multispecificity and avidity are leveraged simultaneously to mediate optimal biological activity.


Sujet(s)
Anticorps neutralisants/immunologie , Affinité des anticorps/immunologie , Anticorps anti-VIH/immunologie , Tests de neutralisation , Ingénierie des protéines , Anticorps neutralisants/composition chimique , Anticorps neutralisants à large spectre/composition chimique , Anticorps neutralisants à large spectre/immunologie , Épitopes/composition chimique , Épitopes/immunologie , Anticorps anti-VIH/composition chimique , Anticorps anti-VIH/génétique , VIH-1 (Virus de l'Immunodéficience Humaine de type 1)/immunologie , Humains , Modèles moléculaires , Tests de neutralisation/méthodes , Conformation des protéines , Ingénierie des protéines/méthodes , Relation structure-activité
10.
J Virol ; 96(2): e0168921, 2022 01 26.
Article de Anglais | MEDLINE | ID: mdl-34730392

RÉSUMÉ

The low abundance of envelope spikes and the inability of IgG to aggregate virions render HIV-1 an inadequate target for antibody-mediated clearance by phagocytes. In an attempt to improve the ability of antibody to mediate the internalization of HIV-1 virions, we generated multimers of the broadly neutralizing HIV-1-specific monoclonal antibody (MAb) VRC01 using site-directed mutagenesis of the Fc segment. We then measured virion internalization using primary human monocytes and neutrophils. We found that, in the absence of complement, immune complexes consisting of HIV-1 virions and VRC01 multimers were slightly more efficiently internalized than were complexes formed with monomeric VRC01. The presence of complement, however, greatly augmented internalization of immune complexes formed with the multimeric MAb but had little impact on monomeric MAb-mediated internalization. Multimerization and the presence of complement overcome the limited ability of monomeric antibody to mediate internalization of HIV-1 virions and may thus provide a therapeutic approach to clearing virus. IMPORTANCE Antibody-mediated internalization of HIV-1 by phagocytes, a potential mechanism for clearing virus, is very inefficient. In an effort to improve viral clearance, we produced a multimeric form of the broadly neutralizing monoclonal antibody VRC01. We found that VRC01 antibody multimers (primarily hexamers) were only slightly more efficient in mediating HIV-1 internalization than was monomeric VRC01. However, the addition of complement resulted in substantially greater internalization of multimer-opsonized virus. In contrast, complement had little if any impact on internalization of monomer-opsonized virus. Therefore, antibody multimerization in combination with complement may overcome the limited ability of monomeric antibody to mediate internalization of HIV-1 virions. Our findings may provide a therapeutic approach to clearing virus.


Sujet(s)
Protéines du système du complément/immunologie , Anticorps anti-VIH/immunologie , VIH-1 (Virus de l'Immunodéficience Humaine de type 1)/immunologie , Phagocytose/immunologie , Virion/immunologie , Complexe antigène-anticorps/composition chimique , Complexe antigène-anticorps/génétique , Complexe antigène-anticorps/immunologie , Anticorps neutralisants à large spectre/composition chimique , Anticorps neutralisants à large spectre/génétique , Anticorps neutralisants à large spectre/immunologie , Anticorps anti-VIH/composition chimique , Anticorps anti-VIH/génétique , Protéine d'enveloppe gp41 du VIH/immunologie , Humains , Monocytes/immunologie , Mutation , Granulocytes neutrophiles/immunologie , Multimérisation de protéines , Récepteur Fc/génétique , Récepteur Fc/immunologie
11.
J Virol ; 96(1): e0134321, 2022 01 12.
Article de Anglais | MEDLINE | ID: mdl-34668778

RÉSUMÉ

Longitudinal studies in HIV-1-infected individuals have indicated that 2 to 3 years of infection are required to develop broadly neutralizing antibodies. However, we have previously identified individuals with broadly neutralizing activity (bNA) in early HIV-1 infection, indicating that a vaccine may be capable of bNA induction after short periods of antigen exposure. Here, we describe 5 HIV-1 envelope sequences from individuals who have developed bNA within the first 100 days of infection (early neutralizers) and selected two of them to design immunogens based on HIV-1-Gag virus-like particles (VLPs). These VLPs were homogeneous and incorporated the corresponding envelopes (7 to 9 µg of gp120 in 1010 VLPs). Both envelopes (Envs) bound to well-characterized broadly neutralizing antibodies (bNAbs), including trimer-specific antibodies (PGT145, VRC01, and 35022). For immunogenicity testing, we immunized rabbits with the Env-VLPs or with the corresponding stabilized soluble envelope trimers. A short immunization protocol (105 days) was used to recapitulate the early nAb induction observed after HIV-1 infection in these two individuals. All VLP and trimeric envelope immunogens induced a comparably strong anti-gp120 response despite having immunized rabbits with 30 times less gp120 in the case of the Env-VLPs. In addition, animals immunized with VLP-formulated Envs induced antibodies that cross-recognized the corresponding soluble stabilized trimer and vice versa, even though no neutralizing activity was observed. Nevertheless, our data may provide a new platform of immunogens, based on HIV-1 envelopes from patients with early broadly neutralizing responses, with the potential to generate protective immune responses using vaccination protocols similar to those used in classical preventive vaccines. IMPORTANCE It is generally accepted that an effective HIV-1 vaccine should be able to induce broad-spectrum neutralizing antibodies. Since most of these antibodies require long periods of somatic maturation in vivo, several groups are developing immunogens, based on the HIV envelope protein, that require complex and lengthy immunization protocols that would be difficult to implement in the general population. Here, we show that rabbits immunized with new envelopes (VLP formulated) from two individuals who demonstrated broadly neutralizing activity very early after infection induced specific HIV-1 antibodies after a short immunization protocol. This evidence provides the basis for generating protective immune responses with classic vaccination protocols with vaccine prototypes based on HIV envelope sequences from individuals who have developed early broadly neutralizing responses.


Sujet(s)
Anticorps neutralisants/immunologie , Anticorps anti-VIH/immunologie , Infections à VIH/immunologie , VIH-1 (Virus de l'Immunodéficience Humaine de type 1)/immunologie , Vaccins à pseudo-particules virales/immunologie , Produits du gène env du virus de l'immunodéficience humaine/immunologie , Vaccins contre le SIDA/immunologie , Adulte , Production d'anticorps , Anticorps neutralisants à large spectre/immunologie , Numération des lymphocytes CD4 , Rapport CD4-CD8 , Cartographie épitopique , Épitopes/immunologie , Femelle , Anticorps anti-VIH/composition chimique , Infections à VIH/virologie , Interactions hôte-pathogène/immunologie , Humains , Immunisation , Mâle , Adulte d'âge moyen , Modèles moléculaires , Conformation des protéines , Relation structure-activité , Produits du gène env du virus de l'immunodéficience humaine/composition chimique
12.
J Chem Inf Model ; 62(2): 359-371, 2022 01 24.
Article de Anglais | MEDLINE | ID: mdl-34971312

RÉSUMÉ

The use of broadly neutralizing antibodies against human immunodeficiency virus type 1 (HIV-1) has been shown to be a promising therapeutic modality in the prevention of HIV infection. Understanding the b12-gp120 binding mechanism under physiological conditions may assist the development of more broadly effective antibodies. In this work, the main conformations and interactions between the receptor-binding domain (RBD) of spike glycoprotein gp120 of HIV-1 and the IgG1-b12 mAb are studied. Accelerated molecular dynamics (aMD) and ab initio hybrid molecular dynamics have been combined to determine the most persistent interactions between the most populated conformations of the antibody-antigen complex under physiological conditions. The results show the most persistent receptor-binding mapping in the conformations of the antibody-antigen interface in solution. The binding-free-energy decomposition reveals a small enhancement in the contribution played by the CDR-H3 region to the b12-gp120 interface compared to the crystal structure.


Sujet(s)
Infections à VIH , VIH-1 (Virus de l'Immunodéficience Humaine de type 1) , Séquence d'acides aminés , Anticorps anti-VIH/composition chimique , Protéine d'enveloppe gp120 du VIH , Humains , Immunoglobuline G
13.
Retrovirology ; 18(1): 35, 2021 10 30.
Article de Anglais | MEDLINE | ID: mdl-34717659

RÉSUMÉ

BACKGROUND: The critical role of antibody Fc-mediated effector functions in immune defense has been widely reported in various viral infections. These effector functions confer cellular responses through engagement with innate immune cells. The precise mechanism(s) by which immunoglobulin G (IgG) Fc domain and cognate receptors may afford protection are poorly understood, however, in the context of HIV/SHIV infections. Many different in vitro assays have been developed and utilized to measure effector functions, but the extent to which these assays capture distinct antibody activities has not been fully elucidated. RESULTS: In this study, six Fc-mediated effector function assays and two biophysical antibody profiling assays were performed on a common set of samples from HIV-1 infected and vaccinated subjects. Biophysical antibody profiles supported robust prediction of diverse IgG effector functions across distinct Fc-mediated effector function assays. While a number of assays showed correlated activities, supervised machine learning models indicated unique antibody features as primary contributing factors to the associated effector functions. Additional experiments established the mechanistic relevance of relationships discovered using this unbiased approach. CONCLUSIONS: In sum, this study provides better resolution on the diversity and complexity of effector function assays, offering a clearer perspective into this family of antibody mechanisms of action to inform future HIV-1 treatment and vaccination strategies.


Sujet(s)
Anticorps anti-VIH/composition chimique , Anticorps anti-VIH/immunologie , Infections à VIH/virologie , VIH-1 (Virus de l'Immunodéficience Humaine de type 1)/immunologie , Fragments Fc des immunoglobulines/composition chimique , Fragments Fc des immunoglobulines/immunologie , Immunoglobuline G/composition chimique , Immunoglobuline G/immunologie , Infections à VIH/immunologie , Humains
14.
Nat Commun ; 12(1): 4817, 2021 08 10.
Article de Anglais | MEDLINE | ID: mdl-34376662

RÉSUMÉ

Engineered ectodomain trimer immunogens based on BG505 envelope glycoprotein are widely utilized as components of HIV vaccine development platforms. In this study, we used rhesus macaques to evaluate the immunogenicity of several stabilized BG505 SOSIP constructs both as free trimers and presented on a nanoparticle. We applied a cryoEM-based method for high-resolution mapping of polyclonal antibody responses elicited in immunized animals (cryoEMPEM). Mutational analysis coupled with neutralization assays were used to probe the neutralization potential at each epitope. We demonstrate that cryoEMPEM data can be used for rapid, high-resolution analysis of polyclonal antibody responses without the need for monoclonal antibody isolation. This approach allowed to resolve structurally distinct classes of antibodies that bind overlapping sites. In addition to comprehensive mapping of commonly targeted neutralizing and non-neutralizing epitopes in BG505 SOSIP immunogens, our analysis revealed that epitopes comprising engineered stabilizing mutations and of partially occupied glycosylation sites can be immunogenic.


Sujet(s)
Vaccins contre le SIDA/immunologie , Anticorps monoclonaux/immunologie , Anticorps neutralisants/immunologie , Production d'anticorps/immunologie , Anticorps anti-VIH/immunologie , Produits du gène env du virus de l'immunodéficience humaine/immunologie , Animaux , Anticorps monoclonaux/composition chimique , Anticorps monoclonaux/ultrastructure , Anticorps neutralisants/composition chimique , Anticorps neutralisants/ultrastructure , Cryomicroscopie électronique/méthodes , Épitopes/composition chimique , Épitopes/immunologie , Épitopes/métabolisme , Glycosylation , Anticorps anti-VIH/composition chimique , Anticorps anti-VIH/ultrastructure , Infections à VIH/immunologie , Infections à VIH/prévention et contrôle , Infections à VIH/virologie , VIH-1 (Virus de l'Immunodéficience Humaine de type 1)/génétique , VIH-1 (Virus de l'Immunodéficience Humaine de type 1)/immunologie , VIH-1 (Virus de l'Immunodéficience Humaine de type 1)/métabolisme , Humains , Macaca mulatta , Modèles moléculaires , Conformation des protéines , Produits du gène env du virus de l'immunodéficience humaine/ultrastructure
15.
Sci Adv ; 7(31)2021 07.
Article de Anglais | MEDLINE | ID: mdl-34321200

RÉSUMÉ

Rationally designed protein subunit vaccines are being developed for a variety of viruses including influenza, RSV, SARS-CoV-2, and HIV. These vaccines are based on stabilized versions of the primary targets of neutralizing antibodies on the viral surface, namely, viral fusion glycoproteins. While these immunogens display the epitopes of potent neutralizing antibodies, they also present epitopes recognized by non-neutralizing or weakly neutralizing ("off-target") antibodies. Using our recently developed electron microscopy polyclonal epitope mapping approach, we have uncovered a phenomenon wherein off-target antibodies elicited by HIV trimer subunit vaccines cause the otherwise highly stabilized trimeric proteins to degrade into cognate protomers. Further, we show that these protomers expose an expanded suite of off-target epitopes, normally occluded inside the prefusion conformation of trimer, that subsequently elicit further off-target antibody responses. Our study provides critical insights for further improvement of HIV subunit trimer vaccines for future rounds of the iterative vaccine design process.


Sujet(s)
Vaccins contre le SIDA/immunologie , Anticorps anti-VIH/composition chimique , Infections à VIH/immunologie , VIH-1 (Virus de l'Immunodéficience Humaine de type 1)/composition chimique , Produits du gène env du virus de l'immunodéficience humaine/composition chimique , Vaccins contre le SIDA/composition chimique , Animaux , COVID-19/immunologie , Femelle , Anticorps anti-VIH/immunologie , VIH-1 (Virus de l'Immunodéficience Humaine de type 1)/immunologie , Humains , Macaca mulatta , Lapins , SARS-CoV-2/composition chimique , SARS-CoV-2/immunologie , Produits du gène env du virus de l'immunodéficience humaine/immunologie
16.
Proc Natl Acad Sci U S A ; 118(29)2021 07 20.
Article de Anglais | MEDLINE | ID: mdl-34261793

RÉSUMÉ

Three variable 2 (V2) loops of HIV-1 envelope glycoprotein (Env) trimer converge at the Env apex to form the epitope of an important classes of HIV-1 broadly neutralizing antibodies (bNAbs). These V2-glycan/apex antibodies are exceptionally potent but less broad (∼60 to 75%) than many other bNAbs. Their CDRH3 regions are typically long, acidic, and tyrosine sulfated. Tyrosine sulfation complicates efforts to improve these antibodies through techniques such as phage or yeast display. To improve the breadth of CAP256-VRC26.25 (VRC26.25), a very potent apex antibody, we adapted and extended a B cell display approach. Specifically, we used CRISPR/Cas12a to introduce VRC26.25 heavy- and light-chain genes into their respective loci in a B cell line, ensuring that each cell expresses a single VRC26.25 variant. We then diversified these loci through activation-induced cytidine deaminase-mediated hypermutation and homology-directed repair using randomized CDRH3 sequences as templates. Iterative sorting with soluble Env trimers and further randomization selected VRC26.25 variants with successively improving affinities. Three mutations in the CDRH3 region largely accounted for this improved affinity, and VRC26.25 modified with these mutations exhibited greater breadth and potency than the original antibody. Our data describe a broader and more-potent form of VRC26.25 as well as an approach useful for improving the breadth and potency of antibodies with functionally important posttranslational modifications.


Sujet(s)
Anticorps neutralisants à large spectre/immunologie , Anticorps anti-VIH/immunologie , VIH-1 (Virus de l'Immunodéficience Humaine de type 1)/immunologie , Lymphocytes B/immunologie , Anticorps neutralisants à large spectre/composition chimique , Anticorps neutralisants à large spectre/génétique , Anticorps anti-VIH/composition chimique , Anticorps anti-VIH/génétique , Infections à VIH/immunologie , Infections à VIH/virologie , VIH-1 (Virus de l'Immunodéficience Humaine de type 1)/génétique , Humains , Ingénierie des protéines , Produits du gène env du virus de l'immunodéficience humaine/génétique , Produits du gène env du virus de l'immunodéficience humaine/immunologie
17.
J Am Chem Soc ; 143(23): 8565-8571, 2021 06 16.
Article de Anglais | MEDLINE | ID: mdl-34096703

RÉSUMÉ

Carbohydrate binding proteins (CBPs) are attractive targets in medicine and biology. Multivalency, with several glycans binding to several binding pockets in the CBP, is important for high-affinity interactions. Herein, we describe a novel platform for design of multivalent carbohydrate cluster ligands by directed evolution, in which serum-stable 2'-fluoro modified RNA (F-RNA) backbones evolve to present the glycan in optimal clusters. We have validated this method by the selection of oligomannose (Man9) glycan clusters from a sequence pool of ∼1013 that bind to broadly neutralizing HIV antibody 2G12 with 13 to 36 nM affinities.


Sujet(s)
Glucides/composition chimique , Anticorps anti-VIH/composition chimique , ARN/composition chimique
18.
J Virol ; 95(12)2021 05 24.
Article de Anglais | MEDLINE | ID: mdl-33827946

RÉSUMÉ

Broadly neutralizing antibodies (bNAbs) are the focus of increasing interest for human immunodeficiency virus type 1 (HIV-1) prevention and treatment. Although several bNAbs are already under clinical evaluation, the development of antibodies with even greater potency and breadth remains a priority. Recently, we reported a novel strategy for improving bNAbs against the CD4-binding site (CD4bs) of gp120 by engraftment of the elongated framework region 3 (FR3) from VRC03, which confers the ability to establish quaternary interactions with a second gp120 protomer. Here, we applied this strategy to a new series of anti-CD4bs bNAbs (N49 lineage) that already possess high potency and breadth. The resultant chimeric antibodies bound the HIV-1 envelope (Env) trimer with a higher affinity than their parental forms. Likewise, their neutralizing capacity against a global panel of HIV-1 Envs was also increased. The introduction of additional modifications further enhanced the neutralization potency. We also tried engrafting the elongated CDR1 of the heavy chain from bNAb 1-18, another highly potent quaternary-binding antibody, onto several VRC01-class bNAbs, but none of them was improved. These findings point to the highly selective requirements for the establishment of quaternary contact with the HIV-1 Env trimer. The improved anti-CD4bs antibodies reported here may provide a helpful complement to current antibody-based protocols for the therapy and prevention of HIV-1 infection.IMPORTANCE Monoclonal antibodies represent one of the most important recent innovations in the fight against infectious diseases. Although potent antibodies can be cloned from infected individuals, various strategies can be employed to improve their activity or pharmacological features. Here, we improved a lineage of very potent antibodies that target the receptor-binding site of HIV-1 by engineering chimeric molecules containing a fragment from a different monoclonal antibody. These engineered antibodies are promising candidates for development of therapeutic or preventive approaches against HIV/AIDS.


Sujet(s)
Sites de fixation des anticorps , Anticorps neutralisants à large spectre/immunologie , Antigènes CD4/métabolisme , Anticorps anti-VIH/immunologie , Protéine d'enveloppe gp120 du VIH/composition chimique , Protéine d'enveloppe gp120 du VIH/immunologie , VIH-1 (Virus de l'Immunodéficience Humaine de type 1)/immunologie , Ingénierie des protéines , Anticorps monoclonaux/composition chimique , Anticorps monoclonaux/génétique , Anticorps monoclonaux/immunologie , Anticorps monoclonaux/usage thérapeutique , Sites de fixation , Sites de fixation des anticorps/immunologie , Anticorps neutralisants à large spectre/composition chimique , Anticorps neutralisants à large spectre/génétique , Anticorps neutralisants à large spectre/usage thérapeutique , Antigènes CD4/composition chimique , Épitopes/composition chimique , Épitopes/immunologie , Anticorps anti-VIH/composition chimique , Anticorps anti-VIH/génétique , Anticorps anti-VIH/usage thérapeutique , Protéine d'enveloppe gp120 du VIH/métabolisme , Infections à VIH/prévention et contrôle , Infections à VIH/thérapie , Humains , Modèles moléculaires , Mutation , Liaison aux protéines , Multimérisation de protéines , Sous-unités de protéines/composition chimique
19.
Arch Virol ; 166(5): 1283-1296, 2021 May.
Article de Anglais | MEDLINE | ID: mdl-33606110

RÉSUMÉ

The lack of progress in finding an efficient vaccine for a human immunodeficiency virus (HIV) is daunting. In fact, this search has spanned nearly four decades without much success. There are several objective reasons for such a failure, which include the highly glycosylated nature of HIV-1, the presence of neotopes, and high mutation rates. This article argues that the presence of highly flexible and intrinsically disordered regions in both human anti-HIV-1 antibodies and the major HIV-1immunogen, its surface glycoprotein gp120, represent one of the major causes for the lack of success in utilization of structure-based reverse vaccinology.


Sujet(s)
Vaccins contre le SIDA/composition chimique , VIH-1 (Virus de l'Immunodéficience Humaine de type 1)/immunologie , Protéines intrinsèquement désordonnées/composition chimique , Vaccins contre le SIDA/immunologie , Anticorps neutralisants/composition chimique , Anticorps neutralisants/immunologie , Complexe antigène-anticorps/composition chimique , Complexe antigène-anticorps/immunologie , Anticorps anti-VIH/composition chimique , Anticorps anti-VIH/immunologie , Protéine d'enveloppe gp120 du VIH/composition chimique , Protéine d'enveloppe gp120 du VIH/immunologie , Infections à VIH/prévention et contrôle , Infections à VIH/virologie , VIH-1 (Virus de l'Immunodéficience Humaine de type 1)/composition chimique , Humains , Immunoglobuline G/composition chimique , Immunoglobuline G/immunologie , Protéines intrinsèquement désordonnées/immunologie
20.
EBioMedicine ; 65: 103252, 2021 Mar.
Article de Anglais | MEDLINE | ID: mdl-33640794

RÉSUMÉ

BACKGROUND: A research priority in finding a cure for HIV is to establish methods to accurately locate and quantify where and how HIV persists in people living with HIV (PLWH) receiving suppressive antiretroviral therapy (ART). Infusing copper-64 (64Cu) radiolabelled broadly neutralising antibodies targeting HIV envelope (Env) with CT scan and positron emission tomography (PET) identified HIV Env in tissues in SIV infected non-human primates . We aimed to determine if a similar approach was effective in people living with HIV (PLWH). METHODS: Unmodified 3BNC117 was compared with 3BNC117 bound to the chelator MeCOSar and 64Cu (64Cu-3BNC117) in vitro to assess binding and neutralization. In a clinical trial 64Cu-3BNC117 was infused into HIV uninfected (Group 1), HIV infected and viremic (viral load, VL >1000 c/mL; Group 2) and HIV infected aviremic (VL <20 c/mL; Group 3) participants using two dosing strategies: high protein (3mg/kg unlabeled 3BNC117 combined with <5mg 64Cu-3BNC117) and trace (<5mg 64Cu-3BNC117 only). All participants were screened for 3BNC117 sensitivity from virus obtained from viral outgrowth. Magnetic resonance imaging (MRI)/PET and pharmacokinetic assessments (ELISA for serum 3BNC117 concentrations and gamma counting for 64Cu) were performed 1, 24- and 48-hours post dosing. The trial (clincialtrials.gov NCT03063788) primary endpoint was comparison of PET standard uptake values (SUVs) in regions of interest (e.g lymph node groups and gastrointestinal tract). FINDINGS: Comparison of unmodified and modified 3BNC117 in vitro demonstrated no difference in HIV binding or neutralisation. 17 individuals were enrolled of which 12 were dosed including Group 1 (n=4, 2 high protein, 2 trace dose), Group 2 (n=6, 2 high protein, 4 trace) and Group 3 (n=2, trace only). HIV+ participants had a mean CD4 of 574 cells/microL and mean age 43 years. There were no drug related adverse effects and no differences in tissue uptake in regions of interest (e.g lymph node gut, pharynx) between the 3 groups. In the high protein dosing group, serum concentrations of 3BNC117 and gamma counts were highly correlated demonstrating that 64Cu-3BNC117 remained intact in vivo. INTERPRETATION: In PLWH on or off ART, the intervention of infusing 64Cu-3BNC117 and MRI/PET imaging over 48 hours, was unable to detect HIV-1 env expression in vivo. Future studies should investigate alternative radiolabels such as zirconium which have a longer half-life in vivo. FUNDING: Funded by the Alfred Foundation, The Australian Centre for HIV and Hepatitis Virology Research with additional support from the Division of AIDS, National Institute of Allergy and Infectious Disease, US National Institutes of Health (USAI126611). JHM and SRL are supported by the Australian National Health and Medical Research Council.


Sujet(s)
Anticorps monoclonaux/composition chimique , Anticorps anti-VIH/composition chimique , Infections à VIH/imagerie diagnostique , VIH-1 (Virus de l'Immunodéficience Humaine de type 1)/immunologie , Radiopharmaceutiques/administration et posologie , Adulte , Antirétroviraux/usage thérapeutique , Anticorps monoclonaux/immunologie , Lymphocytes T CD4+/cytologie , Lymphocytes T CD4+/métabolisme , Lymphocytes T CD4+/virologie , Études cas-témoins , Radio-isotopes du cuivre/composition chimique , Femelle , Anticorps anti-VIH/immunologie , Protéine d'enveloppe gp120 du VIH/immunologie , Infections à VIH/traitement médicamenteux , Infections à VIH/virologie , VIH-1 (Virus de l'Immunodéficience Humaine de type 1)/isolement et purification , VIH-1 (Virus de l'Immunodéficience Humaine de type 1)/métabolisme , Période , Humains , Marquage isotopique , Mâle , Adulte d'âge moyen , Tomographie par émission de positons , Radiopharmaceutiques/composition chimique , Radiopharmaceutiques/immunologie , Radiopharmaceutiques/pharmacocinétique , Tomodensitométrie
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