RÉSUMÉ
In this study, the effects of different salinity gradients and addition of compatible solutes on anaerobic treated effluent water qualities, sludge characteristics and microbial communities were investigated. The increase in salinity resulted in a decrease in particle size of the granular sludge, which was concentrated in the range of 0.5-1.0 mm. The content of EPS (extracellular polymeric substances) in the granular sludge gradually increased with increasing salinity and the addition of betaine (a typical compatible solute). Meanwhile, the microbial community structure was significantly affected by salinity, with high salinity reducing the diversity of bacteria. At higher salinity, Patescibacteria and Proteobacteria gradually became the dominant phylum, with relative abundance increasing to 13.53% and 12.16% at 20 g/L salinity. Desulfobacterota and its subordinate Desulfovibrio, which secrete EPS in large quantities, dominated significantly after betaine addition.Their relative abundance reached 13.65% and 7.86% at phylum level and genus level. The effect of these changes on the treated effluent was shown as the average chemical oxygen demand (COD) removal rate decreased from 82.10% to 79.71%, 78.01%, 68.51% and 64.55% when the salinity gradually increased from 2 g/L to 6, 10, 16 and 20 g/L. At the salinity of 20 g/L, average COD removal increased to 71.65% by the addition of 2 mmol/L betaine. The gradient elevated salinity and the exogenous addition of betaine played an important role in achieving stability of the anaerobic system in a highly saline environment, which provided a feasible strategy for anaerobic treatment of organic saline wastewater.
Sujet(s)
Bétaïne , Salinité , Eaux d'égout , Élimination des déchets liquides , Eaux usées , Bétaïne/métabolisme , Eaux d'égout/microbiologie , Élimination des déchets liquides/méthodes , Eaux usées/composition chimique , Anaérobiose , Microbiote/effets des médicaments et des substances chimiques , Bactéries/métabolisme , Bactéries/effets des médicaments et des substances chimiquesRÉSUMÉ
Objective: To study the distribution and drug resistance characteristics of pathogenic bacteria in the elderly population of China by collecting and analyzing the standardized case data on the pathogens of infections in elderly patients, and to facilitate the establishment of a standardized layered surveillance system for pathogenic bacteria in China. Methods: We collected the case data of elderly patients (≥65 years old) from 62 sentinel hospitals across the country in 2021. Then, we statistically analyzed the data by patient age, their geographical region, the distribution of pathogenic bacteria, and the drug resistance characteristics of main pathogens. Results: A total of 3468 cases from across the country were included in the study. The top three sources of patients were the intensive care unit (13.2%), the department of respiratory medicine (11.2%), and the department of general surgery (8.4%). The top three types of specimens were urine (25.5%), sputum (20.6%), and blood (18.7%). A total of 3468 strains of pathogens were isolated, among which, 78.9% were gram-negative bacteria and 21.1% were gram-positive bacteria. The top five types of bacteria were Escherichia coli (20.9%), Klebsiella pneumoniae (18.3%), Pseudomonas aeruginosa (11.2%), Staphylococcus aureus (9.0%), and Acinetobacter baumannii (7.0%). The isolation rates of common important drug-resistant bacteria were 38.0% for methicillin-resistant Staphylococcus aureus (MRSA), 68.7% for carbapenem-resistant Acinetobacter baumannii (CRAB), and 38.2% for carbapenem-resistant Pseudomonas aeruginosa (CRPA), 20.1% for carbapenem-resistant Klebsiella pneumoniae (CRKP), 5.2% for carbapenem-resistant Escherichia coli (CRECO), and 2.1% for vancomycin-resistant Enterococcus (VRE). There were differences in the isolation rates of CRAB and CRKP in clinical care in the elderly population in seven geographical regions of China (P<0.05). Klebsiella pneumoniae is the most important pathogen in the elderly population ≥85 years old, and the isolation rates of CRKP showed significant differences in different age groups (P<0.05). Conclusion: There are significant differences in the drug resistance of pathogenic bacteria in the elderly populations of different regions and age groups in China. Therefore, monitoring the distribution and drug resistance of pathogenic bacteria in the elderly population and formulating targeted treatment plans according to the characteristics of the specific regions and age groups are of great significance to the improvement in the treatment outcomes and prognosis of the elderly population.
Sujet(s)
Antibactériens , Klebsiella pneumoniae , Humains , Sujet âgé , Chine/épidémiologie , Antibactériens/pharmacologie , Klebsiella pneumoniae/effets des médicaments et des substances chimiques , Klebsiella pneumoniae/isolement et purification , Sujet âgé de 80 ans ou plus , Bactéries à Gram négatif/effets des médicaments et des substances chimiques , Bactéries à Gram négatif/isolement et purification , Résistance bactérienne aux médicaments , Acinetobacter baumannii/effets des médicaments et des substances chimiques , Acinetobacter baumannii/isolement et purification , Multirésistance bactérienne aux médicaments , Pseudomonas aeruginosa/effets des médicaments et des substances chimiques , Pseudomonas aeruginosa/isolement et purification , Escherichia coli/effets des médicaments et des substances chimiques , Escherichia coli/isolement et purification , Staphylococcus aureus résistant à la méticilline/effets des médicaments et des substances chimiques , Staphylococcus aureus résistant à la méticilline/isolement et purification , Infections bactériennes/microbiologie , Infections bactériennes/épidémiologie , Tests de sensibilité microbienne , Mâle , Bactéries/effets des médicaments et des substances chimiques , Bactéries/isolement et purification , Bactéries/classification , Femelle , Staphylococcus aureus/effets des médicaments et des substances chimiques , Staphylococcus aureus/isolement et purificationRÉSUMÉ
The global issue of antimicrobial resistance poses significant challenges to public health. The World Health Organization (WHO) has highlighted it as a major global health threat, causing an estimated 700,000 deaths worldwide. Understanding the multifaceted nature of antibiotic resistance is crucial for developing effective strategies. Several physiological and biochemical mechanisms are involved in the development of antibiotic resistance. Bacterial cells may escape the bactericidal actions of the drugs by entering a physiologically dormant state known as bacterial persistence. Recent findings in this field suggest that bacterial persistence can be one of the main sources of chronic infections. The antibiotic tolerance developed by the persister cells could tolerate high levels of antibiotics and may give rise to persister offspring. These persister offspring could be attributed to antibiotic resistance mechanisms, especially in chronic infections. This review attempts to shed light on persister-induced antibiotic resistance and the current therapeutic strategies.
Sujet(s)
Antibactériens , Bactéries , Infections bactériennes , Humains , Antibactériens/pharmacologie , Antibactériens/usage thérapeutique , Bactéries/effets des médicaments et des substances chimiques , Bactéries/croissance et développement , Infections bactériennes/traitement médicamenteux , Infections bactériennes/microbiologie , Résistance bactérienne aux médicaments , Maladie chroniqueRÉSUMÉ
INTRODUCTION: The eye consists of both internal and external compartments. Several variables, including microbes, dust, and high temperatures can cause eye illnesses that can result in blindness. Bacterial eye infections continue to be a major cause of ocular morbidity and blindness, and their prevalence is periodically rising. The objective of the study was to detect bacterial pathogens and assess their susceptibility profiles to antibiotics in the ophthalmology unit of Boru-meda Hospital in Dessie, Ethiopia. METHODS: A hospital-based cross-sectional study was conducted from February 1 to April 30, 2021, among 319 study participants with symptomatic ocular or peri-ocular infections who were enrolled using a consecutive sampling technique. After proper specimen collection, the specimen was immediately inoculated with chocolate, blood, and MacConkey agar. After pure colonies were obtained, they were identified using standard microbiological methods. The Kirby Bauer disk diffusion method was used to test antimicrobial susceptibility patterns, based on the guidelines of the Clinical and Laboratory Standards Institute. RESULTS: The majority of participants developed conjunctivitis 126 (39.5%), followed by blepharitis 47 (14.73%), and dacryocystitis 45 (14.1%). Overall, 164 (51.4%) participants were culture positive, six (1.9%) participants had mixed bacterial isolates, giving a total of 170 bacterial isolates with an isolation rate of 53.3%. The predominant species was CoNS 47 (27.6%), followed by S. aureus 38 (22.4%) and Moraxella species 32 (18.8%). The overall Multi-Drug Resistance (MDR) rate was 62.9%, with 33 (44.6%) being gram-negative and 74 (77.1%) being gram-positive isolates. CONCLUSION: Conjunctivitis was the dominant clinical case and CoNS, was the predominant isolate. A higher rate of MDR isolates, particularly gram-positive ones, was observed. Efficient peri-ocular or ocular bacterial infection surveillance, including microbiological laboratory data, is necessary for monitoring disease trends.
Sujet(s)
Antibactériens , Infections bactériennes de l'oeil , Tests de sensibilité microbienne , Humains , Éthiopie/épidémiologie , Infections bactériennes de l'oeil/microbiologie , Infections bactériennes de l'oeil/épidémiologie , Études transversales , Mâle , Adulte , Femelle , Adulte d'âge moyen , Jeune adulte , Antibactériens/pharmacologie , Antibactériens/usage thérapeutique , Adolescent , Hôpitaux généraux , Bactéries/isolement et purification , Bactéries/effets des médicaments et des substances chimiques , Enfant , Sujet âgé , Enfant d'âge préscolaireRÉSUMÉ
BACKGROUND: Alongside microbiota development, the evolution of the resistome is crucial in understanding the early-life acquisition and persistence of Antibiotic Resistance Genes (ARGs). Therefore, the aim of this study is to provide a comprehensive view of the evolution and dynamics of the neonatal resistome from 7 days to 4 months of age using a high-throughput qPCR platform. METHODS: In the initial phase, a massive screening of 384 ARGs using a high-throughput qPCR in pooled healthy mother-infant pairs feces from the MAMI cohort was carried out to identify the most abundant and prevalent ARGs in infants and in mothers. This pre-analysis allowed for later targeted profiling in a large number of infants in a longitudinal manner during the first 4 months of life. 16S rRNA V3-V4 amplicon sequencing was performed to asses microbial composition longitudinally. Potential factors influencing the microbiota and ARGs in this period were also considered, such as mode of birth and breastfeeding type. RESULTS: Following the massive screening, the top 45 abundant ARGs and mobile genetic elements were identified and studied in 72 infants during their first months of life (7 days, 1, 2, and 4 months). These genes were associated with resistance to aminoglycosides, beta-lactams and tetracyclines, among others, as well as integrons, and other mobile genetic elements. Changes in both ARG composition and quantity were observed during the first 4 months of life: most ARGs abundance increased over time, but mobile genetic elements decreased significantly. Further exploration of modulating factors highlighted the effect on ARG composition of specific microbial genus, and the impact of mode of birth at 7 days and 4 months. The influence of infant formula feeding was observed at 4-month-old infants, who exhibited a distinctive resistome composition. CONCLUSIONS: This study illustrates the ARG evolution and dynamics in the infant gut by use of a targeted, high-throughput, quantitative PCR-based method. An increase in antibiotic resistance over the first months of life were observed with a fundamental role of delivery mode in shaping resistance profiles. Further, we highlighted the influence of feeding methods on the resistome development. These findings offer pivotal insights into dynamics of and factors influencing early-life resistome, with potential avenues for intervention strategies.
Sujet(s)
Antibactériens , Fèces , Microbiome gastro-intestinal , ARN ribosomique 16S , Humains , Microbiome gastro-intestinal/effets des médicaments et des substances chimiques , Microbiome gastro-intestinal/génétique , Nourrisson , Nouveau-né , Fèces/microbiologie , Femelle , Antibactériens/pharmacologie , ARN ribosomique 16S/génétique , Mâle , Allaitement naturel , Bactéries/génétique , Bactéries/effets des médicaments et des substances chimiques , Bactéries/classification , Gènes bactériens/génétique , Résistance bactérienne aux médicaments/génétique , Évolution moléculaire , Résistance microbienne aux médicaments/génétique , Études longitudinalesRÉSUMÉ
Coffee husks are the main by-product of the coffee industry and have been traditionally discarded in the environment or used as fertilizers. However, recent studies have shown that coffee husks have bioactive compounds, such as phenolics and fiber-bound macro antioxidants, offering a range of potential health benefits. This study evaluated the antioxidant capacity, cytoprotective/cytotoxic properties, and stimulatory effects on the relative abundance of selected intestinal bacterial populations of individuals with diabetes of organic coffee husks. Organic coffee husk had good antioxidant capacity, maintained under simulated gastric conditions, with more than 50% of antioxidant capacity remaining. Organic coffee husk exerted cytoprotective properties in Caco-2 cells, indicating that cellular functions were not disturbed, besides not inducing oxidation. Overall, organic coffee husk promoted positive effects on the abundance of distinct intestinal bacterial groups of individuals with diabetes during in vitro colonic fermentation, with a higher relative abundance of Bifidobacterium spp., indicating the availability of components able to reach the colon to be fermented by intestinal microbiota. Organic coffee husk could be a circular material to develop new safe and pesticide-free functional ingredients with antioxidant and potential beneficial effects on human intestinal microbiota.
Sujet(s)
Antioxydants , Café , Microbiome gastro-intestinal , Humains , Antioxydants/pharmacologie , Cellules Caco-2 , Café/composition chimique , Microbiome gastro-intestinal/effets des médicaments et des substances chimiques , Fermentation , Diabète , Coffea/composition chimique , Bactéries/effets des médicaments et des substances chimiquesRÉSUMÉ
BACKGROUND: Current therapy for patients suffering from inflammatory bowel diseases (IBD) is focused on inflammatory mechanisms exclusively and not the dysbiotic microbiota, despite growing evidence implicating a role for intestinal microbes in disease. MAIN BODY: Ongoing research into the intestinal microbiota of IBD patients, using new technologies and/or deeper application of existing ones, has identified a number of microorganisms whose properties and behaviors warrant consideration as causative factors in disease. Such studies have implicated both bacteria and fungi in the pathogenesis of disease. Some of these organisms manifest mechanisms that should be amenable to therapeutic intervention via either conventional or novel drug discovery platforms. Of particular note is a deeper characterization of microbial derived proteases and their destructive potential. CONCLUSION: Given the steady progress on the mechanistic role of the microbiota in inflammatory diseases, it is reasonable to anticipate a future in which therapeutics targeting microbial derived pathogenic factors play an important role in improving the lives of IBD patients.
Sujet(s)
Microbiome gastro-intestinal , Maladies inflammatoires intestinales , Humains , Maladies inflammatoires intestinales/microbiologie , Maladies inflammatoires intestinales/traitement médicamenteux , Animaux , Bactéries/effets des médicaments et des substances chimiques , Bactéries/métabolismeRÉSUMÉ
Biochar amendment is a promising strategy for mitigating antibiotic resistance genes (ARGs) in soil and plants, but its effects on ARGs at field scale are not fully understood. Here, field trials were executed utilizing two plant varieties, Brassica juncea and Lolium multiflorum, with four types of biochar to investigate changes in ARGs and microbiome in soil, rhizosphere, root endophytes, and leaf endophytes. Results showed that biochar altered ARG distribution in soil and plant, and restrained their transmission from soil and rhizosphere to endophytes. A reduction of 1.2-2.2 orders of magnitude in the quantity of ARGs was observed in root and leaf endophytes following biochar addition, while no significant changes were observed in soil and rhizosphere samples. Procrustes and network analyses revealed significant correlations between microbial communities and mobile genetic elements with ARGs (P < 0.05). Besides, redundancy and variation partitioning analysis indicated that bacterial communities may play a dominant role in shaping the ARGs profile, contributing to 43 % of the variation observed in ARGs. These field results suggest that biochar amendment alone may not fully alleviate ARGs in soil, but it has a significant beneficial impact on food safety and human health by effectively reducing ARGs in plant endophytes.
Sujet(s)
Charbon de bois , Résistance microbienne aux médicaments , Microbiote , Rhizosphère , Microbiologie du sol , Microbiote/effets des médicaments et des substances chimiques , Microbiote/génétique , Résistance microbienne aux médicaments/génétique , Lolium/microbiologie , Lolium/génétique , Lolium/effets des médicaments et des substances chimiques , Sol/composition chimique , Moutarde (plante)/génétique , Moutarde (plante)/microbiologie , Bactéries/génétique , Bactéries/effets des médicaments et des substances chimiques , Racines de plante/microbiologie , Endophytes/génétique , Endophytes/effets des médicaments et des substances chimiques , Gènes bactériens , Feuilles de plante/microbiologieRÉSUMÉ
Traditionally, surveillance programs for food products and food processing environments have focused on targeted pathogens and resistance genes. Recent advances in high throughput sequencing allow for more comprehensive and untargeted monitoring. This study assessed the microbiome and resistome in a poultry burger processing line using culturing techniques and whole metagenomic sequencing (WMS). Samples included meat, burgers, and expired burgers, and different work surfaces. Microbiome analysis revealed spoilage microorganisms as the main microbiota, with substantial shifts observed during the shelf-life period. Core microbiota of meat and burgers included Pseudomonas spp., Psychrobacter spp., Shewanella spp. and Brochothrix spp., while expired burgers were dominated by Latilactobacillus spp. and Leuconostoc spp. Cleaning and disinfection (C&D) procedures altered the microbial composition of work surfaces, which still harbored Hafnia spp. and Acinetobacter spp. after C&D. Resistome analysis showed a low overall abundance of resistance genes, suggesting that effective interventions during processing may mitigate their transmission. However, biocide resistance genes were frequently found, indicating potential biofilm formation or inefficient C&D protocols. This study demonstrates the utility of combining culturing techniques and WMS for comprehensive of the microbiome and resistome characterization in food processing lines.
Sujet(s)
Bactéries , Manipulation des aliments , Microbiologie alimentaire , Microbiote , Animaux , Microbiote/génétique , Bactéries/génétique , Bactéries/classification , Bactéries/isolement et purification , Bactéries/effets des médicaments et des substances chimiques , Manipulation des aliments/méthodes , Volaille/microbiologie , Métagénomique/méthodes , Séquençage nucléotidique à haut débit , Résistance bactérienne aux médicaments/génétique , Viande/microbiologie , Produits de basse-cour/microbiologieRÉSUMÉ
Pregnant women undergoing a cesarean section (CS) typically receive antibiotics prior to skin incision to prevent infections. To investigate if the timing of antibiotics influences the infant gut microbiome, we conducted a randomized controlled trial (NCT06030713) in women delivering via a scheduled CS who received antibiotics either before skin incision or after umbilical cord clamping. We performed a longitudinal analysis on 172 samples from 28 infants at 8 post-birth time points and a cross-sectional analysis at 1 month in 79 infants from 3 cohorts. Although no significant associations with bacterial composition, metabolic pathways, short-chain fatty acids, and bile acids were found, we observed subtle differences between the groups at the bacterial strain level and in the load of antibiotic resistance genes. Rather, feeding mode was a predominant and defining factor impacting infant microbial composition. In conclusion, antibiotic administration during CS has only limited effects on the early-life gut microbiome.
Sujet(s)
Antibactériens , Antibioprophylaxie , Césarienne , Microbiome gastro-intestinal , Humains , Microbiome gastro-intestinal/effets des médicaments et des substances chimiques , Femelle , Antibioprophylaxie/méthodes , Grossesse , Antibactériens/administration et posologie , Nourrisson , Nouveau-né , Adulte , Études transversales , Bactéries/génétique , Bactéries/effets des médicaments et des substances chimiques , Bactéries/classification , Études longitudinales , Acides et sels biliaires/métabolisme , Fèces/microbiologieRÉSUMÉ
Globally, there is growing concern over the environmental contamination of coastal ecosystems caused by anthropogenic activities. Here,we performed a study to evaluate the degree of heavy metal contamination in 5 different sediment samples collected from five sites along the Southeastern coast of India. Additionally, the research aims to explore the potential ecological implications of heavy metal contamination on the bacterial diversity, a crucial factor in upholding a sustainable ecosystem. A total of seven heavy metals, i.e., chromium (Cr), copper (Cu), nickel (Ni), lead (Pb), mercury (Hg), cadmium (Cd) and arsenic (As), were assessed and quantified using inductively coupled plasma mass spectrometry. Targeted amplicon sequencing revealed that phylum Proteobacteria (36.9%) was the most dominating followed by Halobacterota (25.5%), Actinobacteriota (15%), Firmicutes (6.7%), Bacteroidota (4.0%), Thermoplasmatota (2.3%), Acidobacteriota (2.0%), Chloroflexi (1.6%), Planctomycetota (1.2%) and Crenarchaeota (1.1%). According to the alpha diversity estimate, lesser bacterial diversity was observed in areas with high pollution levels. Moreover, the physicochemical parameters of the sediments were analyzed. The contamination levels of the sediments were evaluated using the geo-accumulation index (Igeo), contamination factor (CF) and pollution loading index (PLI) to ascertain the comprehensive toxicity status of the sediments. The Igeo values revealed sediment pollution with metals such as Hg and Cd. The sediments obtained from the sampling site PU-01 showed the highest concentration of Hg pollution. Considering the ecotoxicological aspect, the estimated risk index (RI) values indicated a range from low to significant ecological risk.
Sujet(s)
Bactéries , Surveillance de l'environnement , Métaux lourds , Polluants chimiques de l'eau , Inde , Métaux lourds/analyse , Bactéries/classification , Bactéries/génétique , Bactéries/isolement et purification , Bactéries/effets des médicaments et des substances chimiques , Polluants chimiques de l'eau/analyse , Sédiments géologiques/microbiologie , Sédiments géologiques/composition chimique , BiodiversitéRÉSUMÉ
Humic acid (HA) can substantially enhance plant growth and improve soil health. Currently, the impacts of HA concentrations variation on the development and soil quality of Panax notoginseng (Sanqi) from the forest understorey are still unclear. In this study, exogenous HA was administered to the roots of Sanqi at varying concentrations (2, 4, and 6 ml/L). Subsequently, the diversity and community structure of bacteria and fungi were assessed through high-throughput sequencing technology. The investigation further involved analyzing the interplay among the growth of sanqi, soil edaphic factors, and the microbial network stability. Our finding revealed that moderate concentrations (4 ml/L) of HA improved the fresh/dry weight of Sanqi and NO3--N levels. Compared with control, the moderate concentrations of HA had a notable impact on the bacterial and fungal communities compositions. However, there was no significant difference in the α and ß diversity of bacteria and fungi. Moreover, the abundance of beneficial bacteria (Bradyrhizobium) and harmful bacteria (Xanthobacteraceae) increased and decreased at 4 ml/L HA, respectively, while the bacterial and fungal network stability were enhanced. Structural equation model (SEM) revealed that the fresh weight of Sanqi and bacterial and fungal communities were the factors that directly affected the microbial network stability at moderate concentrations of HA. In conclusion, 4 ml/L of HA is beneficial for promoting Sanqi growth and soil quality. Our study provides a reference for increasing the yield of Sanqi and sustainable development of the Sanqi-pine agroforestry system.
Sujet(s)
Engrais , Forêts , Champignons , Substances humiques , Panax notoginseng , Microbiologie du sol , Panax notoginseng/croissance et développement , Substances humiques/analyse , Engrais/analyse , Champignons/croissance et développement , Champignons/effets des médicaments et des substances chimiques , Bactéries/croissance et développement , Bactéries/effets des médicaments et des substances chimiques , Bactéries/génétique , Bactéries/classification , Racines de plante/croissance et développement , Racines de plante/microbiologie , Sol/composition chimique , Microbiote/effets des médicaments et des substances chimiquesRÉSUMÉ
More recently, the application of semiconductor nanomaterials called quantum dots (QDs), has gained considerable attention as they possess tunable optoelectronic and physicochemical properties. There are several routes of QDs synthesis some of which include lithography, molecular beam epitaxy, and chemical reduction. However, most of these methods are expensive, labour intensive, and produce toxic by-products. Hence, the biosynthesis of QDs has been extensively researched for addressing the issues. This review elaborates on the biogenic synthesis of cadmium selenide, cadmium telluride, cadmium sulfide, lead sulfide, and zinc sulfide QDs using bacteria, and fungi. Further, we attempt to identify the underlying mechanism and critical parameters that can control the synthesis of QDs. Eventually, their application in detectors, photovoltaics, biodiesel, photocatalysis, infection-control, and bioimaging are discussed. Thus, biogenic QDs have a tremendous scope in future to emerge as next generation nanotheranostics although thorough pharmacokinetic, and pharmacodynamic studies are required.
Sujet(s)
Bactéries , Composés du cadmium , Champignons , Boîtes quantiques , Sulfures , Composés du zinc , Boîtes quantiques/composition chimique , Bactéries/effets des médicaments et des substances chimiques , Bactéries/métabolisme , Sulfures/composition chimique , Sulfures/métabolisme , Champignons/métabolisme , Champignons/effets des médicaments et des substances chimiques , Composés du cadmium/composition chimique , Composés du zinc/composition chimique , Composés du sélénium/composition chimique , Plomb/composition chimique , TellureRÉSUMÉ
Antimicrobial-resistant bacteria have been an increasing problem in human medicine and animal husbandry since the introduction of antimicrobials on the market in the 1940s. Over the last decades, efforts to reduce antimicrobial usage in animal husbandry have been shown to limit the development of resistant bacteria. Despite this, antimicrobial-resistant bacteria are still commonly detected and isolated worldwide. In this study, we investigated the presence of antimicrobial-resistant bacteria in bovine milk samples using a multiple approach based on culturing and amplicon sequencing. We first enriched milk samples obtained aseptically from bovine udders in the presence of two antimicrobials commonly used to treat mastitis and then described the resistant microbiota by amplicon sequencing and isolate characterization. Our results show that several commensal species and mastitis pathogens harbor antimicrobial resistance and dominate the enriched microbiota in milk in presence of antimicrobial agents. The use of the two different antimicrobials selected for different bacterial taxa and affected the overall microbial composition. These results provide new information on how different antimicrobials can shape the microbiota which is able to survive and reestablish in the udder and point to the fact that antimicrobial resistance is widely spread also in commensal species.
Sujet(s)
Glandes mammaires animales , Mammite bovine , Microbiote , Lait , Animaux , Bovins , Femelle , Microbiote/effets des médicaments et des substances chimiques , Glandes mammaires animales/microbiologie , Glandes mammaires animales/effets des médicaments et des substances chimiques , Mammite bovine/microbiologie , Mammite bovine/traitement médicamenteux , Lait/microbiologie , Bactéries/effets des médicaments et des substances chimiques , Bactéries/génétique , Bactéries/classification , Bactéries/isolement et purification , Antibactériens/pharmacologie , Tests de sensibilité microbienne , Résistance bactérienne aux médicaments/effets des médicaments et des substances chimiques , Anti-infectieux/pharmacologie , ARN ribosomique 16S/génétiqueRÉSUMÉ
Studying individual ecological niches within the oral cavity is a logical first step to understanding the distribution of antimicrobial resistance genes (ARGs); however, it is not representative of the whole oral resistome. The aim of our systematic review was to provide a map of the oral resistome by reviewing the composition of individual niches. A total of 580 papers were retrieved from a search of all English language publications investigating the presence of oral ARGs in five electronic databases between January 2015 and August 2023. Fifteen studies [10 PCR and 5 next-generation sequencing (NGS)] were included in this review. The heterogeneity of methods precluded meta-analysis. ARGs are present throughout the oral cavity with 158 unique ARGs identified across 6 locations - supra and sub-gingival biofilm, mucosa, oropharynx, root canal system (RCS) and saliva. The supragingival biofilm had the highest resistome richness, while the RCS had the least. Tetracycline was the dominant antimicrobial resistance (AMR) class found. Three core genes were identified - tet(M), tet(O) and ermB.This review highlights the necessity of NGS studies to comprehensively characterize the oral resistome in its entirety. This is the logical foundation for future 'omics studies to truly understand the scope of the resistome and its contribution to AMR.
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Biofilms , Résistance bactérienne aux médicaments , Bouche , Humains , Bouche/microbiologie , Résistance bactérienne aux médicaments/génétique , Biofilms/effets des médicaments et des substances chimiques , Biofilms/croissance et développement , Antibactériens/pharmacologie , Bactéries/effets des médicaments et des substances chimiques , Bactéries/génétique , Bactéries/classification , Séquençage nucléotidique à haut débit , Gènes bactériens , Salive/microbiologieRÉSUMÉ
Antibiotics may alter the gut microbiome, and this is one of the mechanisms by which antimicrobial resistance may be promoted. Suboptimal antimicrobial stewardship in Asia has been linked to antimicrobial resistance. We aim to examine the relationship between oral antibiotic use and composition and antimicrobial resistance in the gut microbiome in 1093 Bangladeshi infants. We leverage a trial of 8-month-old infants in rural Bangladesh: 61% of children were cumulatively exposed to antibiotics (most commonly cephalosporins and macrolides) over the 12-month study period, including 47% in the first 3 months of the study, usually for fever or respiratory infection. 16S rRNA amplicon sequencing in 11-month-old infants reveals that alpha diversity of the intestinal microbiome is reduced in children who received antibiotics within the previous 7 days; these samples also exhibit enrichment for Enterococcus and Escherichia/Shigella genera. No effect is seen in children who received antibiotics earlier. Using shotgun metagenomics, overall abundance of antimicrobial resistance genes declines over time. Enrichment for an Enterococcus-related antimicrobial resistance gene is observed in children receiving antibiotics within the previous 7 days, but not earlier. Presence of antimicrobial resistance genes is correlated to microbiome composition. In Bangladeshi children, community use of antibiotics transiently reprofiles the gut microbiome.
Sujet(s)
Antibactériens , Microbiome gastro-intestinal , ARN ribosomique 16S , Humains , Microbiome gastro-intestinal/effets des médicaments et des substances chimiques , Microbiome gastro-intestinal/génétique , Bangladesh/épidémiologie , Nourrisson , Antibactériens/administration et posologie , Antibactériens/pharmacologie , ARN ribosomique 16S/génétique , Mâle , Femelle , Administration par voie orale , Résistance bactérienne aux médicaments/génétique , Fèces/microbiologie , Métagénomique/méthodes , Bactéries/génétique , Bactéries/effets des médicaments et des substances chimiques , Bactéries/classification , Bactéries/isolement et purification , Céphalosporines/administration et posologie , Céphalosporines/pharmacologie , Céphalosporines/usage thérapeutique , Enterococcus/effets des médicaments et des substances chimiques , Enterococcus/génétique , Enterococcus/isolement et purification , Gestion responsable des antimicrobiensRÉSUMÉ
Despite the need for effective treatments against chronic respiratory infections (often caused by pathogenic biofilms), only a few new antimicrobials have been introduced to the market in recent decades. Although different factors impede the successful advancement of antimicrobial candidates from the bench to the clinic, a major driver is the use of poorly predictive model systems in preclinical research. To bridge this translational gap, significant efforts have been made to develop physiologically relevant models capable of recapitulating the key aspects of the airway microenvironment that are known to influence infection dynamics and antimicrobial activity in vivo In this review, we provide an overview of state-of-the-art cell culture platforms and ex vivo models that have been used to model chronic (biofilm-associated) airway infections, including air-liquid interfaces, three-dimensional cultures obtained with rotating-wall vessel bioreactors, lung-on-a-chips and ex vivo pig lungs. Our focus is on highlighting the advantages of these infection models over standard (abiotic) biofilm methods by describing studies that have benefited from these platforms to investigate chronic bacterial infections and explore novel antibiofilm strategies. Furthermore, we discuss the challenges that still need to be overcome to ensure the widespread application of in vivo-like infection models in antimicrobial drug development, suggesting possible directions for future research. Bearing in mind that no single model is able to faithfully capture the full complexity of the (infected) airways, we emphasise the importance of informed model selection in order to generate clinically relevant experimental data.
Sujet(s)
Antibactériens , Biofilms , Infections de l'appareil respiratoire , Animaux , Infections de l'appareil respiratoire/microbiologie , Infections de l'appareil respiratoire/traitement médicamenteux , Humains , Biofilms/effets des médicaments et des substances chimiques , Maladie chronique , Antibactériens/usage thérapeutique , Antibactériens/pharmacologie , Interactions hôte-pathogène , Bactéries/effets des médicaments et des substances chimiques , Bactéries/croissance et développement , Modèles biologiques , Modèles animaux de maladie humaine , Techniques de culture cellulaireRÉSUMÉ
Nanoscience, a pivotal field spanning multiple industries, including healthcare, focuses on nanomaterials characterized by their dimensions. These materials are synthesized through conventional chemical and physical methods, often involving costly and energy-intensive processes. Alternatively, biogenic synthesis using bacteria, fungi, or plant extracts offers a potentially sustainable and non-toxic approach for producing metal-based nanoparticles (NP). This eco-friendly synthesis approach not only reduces environmental impact but also enhances features of NP production due to the unique biochemistry of the biological systems. Recent advancements have shown that along with chemically synthesized NPs, biogenic NPs possess significant antimicrobial properties. The inherent biochemistry of bacteria enables the efficient conversion of metal salts into NPs through reduction processes, which are further stabilized by biomolecular capping layers that improve biocompatibility and functional properties. This mini review explores the use of bacteria to produce NPs with antimicrobial activities. Microbial technologies to produce NP antimicrobials have considerable potential to help address the antimicrobial resistance crisis, thus addressing critical health issues aligned with the United Nations Sustainability Goal #3 of good health and well-being.
Sujet(s)
Anti-infectieux , Bactéries , Nanoparticules métalliques , Bactéries/effets des médicaments et des substances chimiques , Bactéries/métabolisme , Nanoparticules métalliques/composition chimique , Anti-infectieux/pharmacologie , Anti-infectieux/composition chimique , Anti-infectieux/métabolismeRÉSUMÉ
Linear alkylbenzene sulfonate (LAS) is one of the most widely used anionic surfactants and a common toxic pollutant in wastewater. This study employed high throughput sequencing to explore the microbial community structure within activated sludge exposed to a high concentration of LAS. Genera such as Pseudomonas, Aeromonas, Thauera and Klebsiella exhibited a significant positive correlation with LAS concentrations. Furthermore, Comamonas and Klebsiella were significantly enriched under the stress of LAS. Moreover, bacterial strains with LAS-degrading capability were isolated and characterized to elucidate the degradation pathways. The Klebsiella pneumoniae isolate L1 could effectively transform more than 60 % of 25 mg/L of LAS within 72 h. Chemical analyses revealed that L1 utilized the LAS sulfonyl group as a sulfur source to support its growth. Genomic and transcriptomic analyses suggested that strain L1 may uptake LAS through the sulfate ABC transport system and remove sulfonate with sulfate and sulfite reductases.
Sujet(s)
Acides alcanesulfoniques , Dépollution biologique de l'environnement , Eaux d'égout , Tensioactifs , Tensioactifs/métabolisme , Tensioactifs/toxicité , Acides alcanesulfoniques/métabolisme , Acides alcanesulfoniques/toxicité , Eaux d'égout/microbiologie , Bactéries/métabolisme , Bactéries/génétique , Bactéries/effets des médicaments et des substances chimiques , Polluants chimiques de l'eau/métabolisme , Polluants chimiques de l'eau/toxicité , Microbiote/effets des médicaments et des substances chimiquesRÉSUMÉ
Perchlorate (ClO4-) mainly exists in the form of ammonium perchlorate in industrial production. However, the degradation mechanisms of different concentrations of ammonium nitrogen (NH4+-N) and ClO4- mixed pollutants in the environment are not well understood. This study aims to explore the potential of different types of carbon sources for ClO4- and NH4+-N biodegradation. Experimental results showed that the concentration and type of carbon sources are decisive to simultaneous removal of NH4+-N and ClO4-. Under condition of C(COD)/C(ClO4-) ratio of 21.15 ± 4.40, the simultaneously removal efficiency of ClO4- and NH4+-N in acetate (Ace) was relatively higher than that in methanol (Met). C(NH4+-N)/C(ClO4-) ratio of 9.66 ± 0.51 and C(COD)/C(ClO4-) ratio of 2.51 ± 0.87 promoted ClO4- reduction in glucose-C (Glu-C). However, high concentration of Glu could cause pH decrease (from 7.57 to 4.59), thereby inhibiting ClO4- reduction. High-throughput sequencing results indicated that Proteobacteria and Bacteroidetes have made a major contribution to the simultaneous removal of NH4+-N and ClO4-. They are two representative bacterial phyla for participating in both ClO4- reduction and denitrification. Notably, the abundance of main ClO4- degrading bacteria (such as Proteobacteria, Chloroflexi, and Firmicutes) significantly increased by 528.57 % in Glu-C. It can be inferred that the concentration of carbon source and NH4+-N were the most important factors determining the removal efficiency of ClO4- by influencing changes in the core microbial community. This study will provide new techniques and mechanistic insights for the simultaneous removal of mixed ClO4- and nitrogen pollutants, which can also provide theoretical support for innovation in future biological treatment processes.