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1.
Virology ; 584: 24-36, 2023 07.
Article de Anglais | MEDLINE | ID: mdl-37210794

RÉSUMÉ

NS2B protein of the Zika virus acts as a co-factor for NS3 protease and also involves in remodeling NS3 protease structure. Therefore, we investigated the overall dynamics of NS2B protein. We find surprising similarities between selected flavivirus NS2B model structures predicted from Alphafold2. Further, the simulated ZIKV NS2B protein structure shows a disordered cytosolic domain (residues 45-95) as a part of a full-length protein. Since only the cytosolic domain of NS2B is sufficient for the protease activity, we also investigated the conformational dynamics of only ZIKV NS2B cytosolic domain (residues 49-95) in the presence of TFE, SDS, Ficoll, and PEG using simulation and spectroscopy. The presence of TFE induces α-helix in NS2B cytosolic domain (residues 49-95). On the other hand, the presence of SDS, ficoll, and PEG does not induce secondary structural change. This dynamics study could have implications for some unknown folds of the NS2B protein.


Sujet(s)
Infection par le virus Zika , Virus Zika , Humains , Virus Zika/métabolisme , Protéines virales non structurales/métabolisme , Ficoll/métabolisme , Peptide hydrolases/métabolisme
2.
Cells Tissues Organs ; 212(1): 21-31, 2023.
Article de Anglais | MEDLINE | ID: mdl-35168244

RÉSUMÉ

Cell-derived matrices are useful tools for studying the extracellular matrix (ECM) of different cell types and testing the effects on cell migration or wound repair. These matrices typically are generated using extended culture with ascorbic acid to boost ECM production. Applying this technique to cancer cell cultures could advance the study of cancer ECM and its effects on recruitment and training of the tumor microenvironment, but ascorbic acid is potently cytotoxic to cancer cells. Macromolecular crowding (MMC) agents can also be added to increase matrix deposition based on the excluded volume principle. We report the use of MMC alone as an effective strategy to generate brain cancer cell-derived matrices for downstream analyses and cell migration studies. We cultured the mouse glioblastoma cell line GL261 for 1 week in the presence of three previously reported MMC agents (carrageenan, Ficoll 70/400, and hyaluronic acid). We measured the resulting deposition of collagens and sulfated glycosaminoglycans using quantitative assays, as well as other matrix components by immunostaining. Both carrageenan and Ficoll promoted significantly more accumulation of total collagen content, sulfated glycosaminoglycan content, and fibronectin staining. Only Ficoll, however, also demonstrated a significant increase in collagen I staining. The results were more variable in 3D spheroid culture. We focused on Ficoll MMC matrices, which were isolated using the small molecule Raptinal to induce cancer cell apoptosis and matrix decellularization. The cancer cell-derived matrix promoted significantly faster migration of human astrocytes in a scratch wound assay, which may be explained by focal adhesion morphology and an increase in cellular metabolic activity. Ultimately, these data show MMC culture is a useful technique to generate cancer cell-derived matrices and study the effects on stromal cell migration related to wound repair.


Sujet(s)
Astrocytes , Tumeurs du cerveau , Animaux , Souris , Humains , Ficoll/métabolisme , Astrocytes/métabolisme , Carragénane/métabolisme , Collagène/métabolisme , Matrice extracellulaire/métabolisme , Mouvement cellulaire , Tumeurs du cerveau/métabolisme , Structures macromoléculaires/métabolisme , Microenvironnement tumoral
3.
Am J Physiol Renal Physiol ; 319(5): F833-F838, 2020 11 01.
Article de Anglais | MEDLINE | ID: mdl-33017190

RÉSUMÉ

Angiotensin II drives the pathogenesis of diabetic kidney disease, and its systemic administration induces glomerular hyperpermeability in normal rats. However, the response of diabetic glomerular permeability to angiotensin II is largely unknown. In the present study, we investigated the impact of extended systemic administration of angiotensin II on the glomerular permeability of streptozotocin (STZ)-induced late diabetes in rats. We examined the changes in the glomerular permeability after subcutaneous infusion of angiotensin II at 200 ng·kg-1·min-1 for 7 days in male Wistar diabetic rats with 3 mo of STZ-induced diabetes (i.e., blood glucose of ∼20 mmol/L). We also compared these changes with the effects on nondiabetic rats. The sieving coefficients (θ) for inert polydisperse Ficoll molecules, which had a radius of 10-90 Å (Ficoll70-90 Å), were measured in vivo. The θ for large Ficoll molecules was selectively enhanced after infusion of extended angiotensin II in both diabetic (θ for Ficoll70-90 Å = 0.00244 vs. 0.00079, P < 0.001) and nondiabetic animals (θ for Ficoll70-90 Å = 0.00029 vs. 0.00006, P < 0.001). These changes were compatible with the more than twofold increase in the macromolecular glomerular transport through the large-pore pathways after infusion of angiotensin II in both diabetic and nondiabetic animals. Angiotensin II infusion enhanced the large shunt-like glomerular transport pathway of STZ-induced late diabetes. Such defects can account for the large-molecular-weight IgM-uria that is observed in severe diabetic kidney disease.


Sujet(s)
Angiotensine-II/pharmacologie , Diabète expérimental/traitement médicamenteux , Débit de filtration glomérulaire/effets des médicaments et des substances chimiques , Glomérule rénal/effets des médicaments et des substances chimiques , Perméabilité/effets des médicaments et des substances chimiques , Animaux , Glycémie/métabolisme , Diabète expérimental/métabolisme , Néphropathies diabétiques/traitement médicamenteux , Néphropathies diabétiques/métabolisme , Ficoll/métabolisme , Glomérule rénal/métabolisme , Mâle , Rat Wistar
4.
Biochemistry ; 58(28): 3087-3096, 2019 07 16.
Article de Anglais | MEDLINE | ID: mdl-31251033

RÉSUMÉ

Previous biochemical studies of nitric oxide synthase enzymes (NOSs) were conducted in diluted solutions. However, the intracellular milieu where the proteins perform their biological functions is crowded with macromolecules. The effect of crowding on the electron transfer kinetics of multidomain proteins is much less understood. Herein, we investigated the effect of macromolecular crowding on the FMN-heme intraprotein interdomain electron transfer (IET), an obligatory step in NOS catalysis. A noticeable increase in the IET rate in the bidomain oxygenase/FMN (oxyFMN) and the holoprotein of human inducible NOS (iNOS) was observed upon addition of Ficoll 70 in a nonsaturable manner. Additionally, the magnitude of IET enhancement for the holoenzyme is much higher than that that of the oxyFMN construct. The crowding effect is also evident at different ionic strengths. Importantly, the enhancing extent is similar for the iNOS oxyFMN protein with added Ficoll 70 and Dextran 70 that give the same solution viscosity, showing that specific interactions do not exist between the NOS protein and the crowder. Moreover, the population of the docked FMN-heme state is significantly increased upon addition of Ficoll 70 and the fluorescence lifetime values do not correspond to those in the absence of Ficoll 70. The steady-state cytochrome c reduction by the holoenzyme is noticeably enhanced by the crowder, while the ferricyanide reduction is unchanged. The NO production activity of the iNOS holoenzyme is stimulated by Ficoll 70. The effect of macromolecular crowding on the kinetics can be rationalized on the basis of the excluded volume effect, with an entropic origin. The intraprotein electron transfer kinetics, fluorescence lifetime, and steady-state enzymatic activity results indicate that macromolecular crowding modulates the NOS electron transfer through multiple pathways. Such a mechanism should be applicable to electron transfer in other multidomain redox proteins.


Sujet(s)
Ficoll/métabolisme , Flavine mononucléotide/métabolisme , Hème/métabolisme , Nitric oxide synthase type II/métabolisme , Transport d'électrons/effets des médicaments et des substances chimiques , Transport d'électrons/physiologie , Ficoll/pharmacologie , Flavine mononucléotide/composition chimique , Humains , Structures macromoléculaires/métabolisme , Structures macromoléculaires/pharmacologie
5.
Eur Biophys J ; 48(2): 189-202, 2019 Mar.
Article de Anglais | MEDLINE | ID: mdl-30635669

RÉSUMÉ

To study the effect of non-specific interactions arising from proteins being in a crowded environment on physiological processes, the self-interaction of concentrated Dextran T70 and Ficoll 70 and the interactions between a dilute protein and these polymeric macromolecules were quantified using non-ideal tracer sedimentation equilibrium. Sedimentation equilibria of each polymer were measured between 5 and 37 °C, and sedimentation equilibria of 2 mg cm-3 superoxide dismutase (SOD) in 0-0.1 g cm-3 of each polymer was also measured. Results were analyzed using a model-free thermodynamic virial expression of activity coefficients in terms of the concentration of polymer and a structural model using a statistical thermodynamics approximation. The equilibrium gradients of each of the polymers suggest repulsive interaction, which is independent of temperature. However, the net repulsive interaction between superoxide dismutase (SOD) species and the polymers is dependent on temperature. The ratio of the solvation energy of SOD in Dextran T70 to that in Ficoll 70, lnγSOD(Dex)/lnγSOD(Fic) at the same w/v concentration was about 1.8 at 37 °C, 1.6 at the intermediate temperature, and ranges from 1.2 to 1.6 at 5 °C over the entire concentration range. The enthalpy and entropy of interaction of SOD with dilute Dextran T70 are - 14 kJ mol-1 and - 5.6 J K-1 mol-1, respectively. For SOD in dilute Ficoll 70, the enthalpy and entropy are - 8.1 kJ mol-1 and 12.9 J K-1 mol-1, respectively. Thus, Dextran T70 contributes more to the attractive protein-polymer interaction and to self-association of protein than Ficoll 70 and reasons for this are discussed.


Sujet(s)
Dextrane/métabolisme , Ficoll/métabolisme , Superoxide dismutase/métabolisme , Température , Cinétique , Liaison aux protéines , Solutions
6.
Am J Physiol Renal Physiol ; 314(6): F1108-F1116, 2018 06 01.
Article de Anglais | MEDLINE | ID: mdl-28424207

RÉSUMÉ

One of the many unresolved questions regarding the permeability of the glomerular filtration barrier is the reason behind the marked difference in permeability between albumin and polysaccharide probe molecules such as Ficoll and dextran of the same molecular size. Although the differences in permeability have been mainly attributed to charge effects, we have previously shown that this would require a highly charged filtration barrier, having a charge density that is ~10 times more than that on the albumin molecule. In this article, the classic two-pore model was extended by introducing size distributions on the solute molecules, making them conformationally flexible. Experimental sieving data for Ficoll from the rat glomerulus and from precision-made silicon nanopore membranes were analyzed using the model. For the rat glomerulus a small-pore radius of 36.2 Å and a geometric standard deviation (gSD) for the Ficoll size-distribution of 1.16 were obtained. For the nanopore membranes, a gSD of 1.24 and a small-pore radius of 43 Å were found. Interestingly, a variation of only ~16% in the size of the polysaccharide molecule is sufficient to explain the difference in permeability between albumin and Ficoll. Also, in line with previous data, the effects of applying a size distribution on the solute molecule are only evident when the molecular size is close to the pore size. Surely there is at least some variation in the pore radii, and, likely, the gSD obtained in the current study is an overestimation of the "true" variation in the size of the Ficoll molecule.


Sujet(s)
Ficoll/métabolisme , Débit de filtration glomérulaire , Glomérule rénal/métabolisme , Modèles biologiques , Albumines/composition chimique , Albumines/métabolisme , Animaux , Transport biologique , Simulation numérique , Ficoll/composition chimique , Barrière de filtration glomérulaire/métabolisme , Membrane artificielle , Masse moléculaire , Nanopores , Perméabilité , Porosité , Rats , Silicone/composition chimique
7.
Nat Commun ; 8: 15428, 2017 05 18.
Article de Anglais | MEDLINE | ID: mdl-28516908

RÉSUMÉ

Macromolecular crowding ought to stabilize folded forms of proteins, through an excluded volume effect. This explanation has been questioned and observed effects attributed to weak interactions with other cell components. Here we show conclusively that protein stability is affected by volume exclusion and that the effect is more pronounced when the crowder's size is closer to that of the protein under study. Accurate evaluation of the volume exclusion effect is made possible by the choice of yeast frataxin, a protein that undergoes cold denaturation above zero degrees, because the unfolded form at low temperature is more expanded than the corresponding one at high temperature. To achieve optimum sensitivity to changes in stability we introduce an empirical parameter derived from the stability curve. The large effect of PEG 20 on cold denaturation can be explained by a change in water activity, according to Privalov's interpretation of cold denaturation.


Sujet(s)
Dextrane/composition chimique , Ficoll/composition chimique , Protéines de liaison au fer/composition chimique , Polyéthylène glycols/composition chimique , Clonage moléculaire , Basse température , Dextrane/métabolisme , Escherichia coli/génétique , Escherichia coli/métabolisme , Ficoll/métabolisme , Expression des gènes , Température élevée , Protéines de liaison au fer/génétique , Protéines de liaison au fer/métabolisme , Polyéthylène glycols/métabolisme , Dénaturation des protéines , Pliage des protéines , Stabilité protéique , Protéines recombinantes/composition chimique , Protéines recombinantes/génétique , Protéines recombinantes/métabolisme , Saccharomyces cerevisiae , Thermodynamique , Eau/composition chimique , Eau/métabolisme ,
8.
Biochemistry ; 55(22): 3092-101, 2016 06 07.
Article de Anglais | MEDLINE | ID: mdl-27187005

RÉSUMÉ

Calcineurin is a Ser/Thr phosphatase that is important for key biological processes, including immune system activation. We previously identified a region in the intrinsically disordered regulatory domain of calcineurin that forms a critical amphipathic α-helix (the "distal helix") that is required for complete activation of calcineurin. This distal helix was shown to have a Tm close to that of human body temperature. Because the Tm was determined in dilute buffer, we hypothesized that other factors inherent to a cellular environment might modulate the stability of the distal helix. One such factor that contributes to stability in other proteins is macromolecular crowding. The cell cytoplasm is comprised of up to 400 g/L protein, lipids, nucleic acids, and other compounds. We hypothesize that the presence of such crowders could increase the thermal stability of the distal helix and thus lead to a more robust activation of calcineurin in vivo. Using biophysical and biochemical approaches, we show that the distal helix of calcineurin is indeed stabilized when crowded by the synthetic polymers dextran 70 and ficoll 70, and that this stabilization of the distal helix increases the activity of calcineurin.


Sujet(s)
Calcineurine/métabolisme , Calmoduline/métabolisme , Dextrane/métabolisme , Ficoll/métabolisme , Structures macromoléculaires/métabolisme , Calcineurine/composition chimique , Calmoduline/composition chimique , Dichroïsme circulaire , Stabilité enzymatique , Humains , Liaison aux protéines
9.
J Craniomaxillofac Surg ; 43(7): 1177-83, 2015 Sep.
Article de Anglais | MEDLINE | ID: mdl-26138380

RÉSUMÉ

INTRODUCTION: The aim of this work was to analyse the suitability of mesenchymal stem cell isolation by FICOLL density centrifugation and the closed bone marrow aspirate concentrate (BMAC) system for sinus augmentation with bovine bone mineral (BBM) in the sheep model. METHODS: 16 sheep underwent sinus augmentation with BBM and MSCs; they were divided between two groups with survival points of 8 and 16 weeks. For the FICOLL control arm three, and for the BMAC test arm, five augmentations were performed for each time point. The derived cell numbers were counted; a colony forming unit (CFU) assay was performed; the pluripotency of the MSCs was proved; histological and histomorphometrical analysis were performed. RESULTS: The approach of using BBM and MSCs in combination with fibrin adhesive was sufficient for new bone formation as the FICOLL experiment indicated. However, due to significantly lower cell numbers isolated using the BMAC in sheep, less new bone was formed in the test arm. CONCLUSIONS: The BMAC system is well suited for human MSC isolation but it needs to be optimized to fit sheep cell characteristics if it is to be used in this animal model.


Sujet(s)
Cellules de la moelle osseuse/cytologie , Séparation cellulaire/méthodes , Ficoll/métabolisme , Animaux , Différenciation cellulaire , Femelle , Cellules souches mésenchymateuses , Modèles animaux , Ovis
10.
Biointerphases ; 10(2): 021009, 2015 Jun 10.
Article de Anglais | MEDLINE | ID: mdl-26062547

RÉSUMÉ

In this study, an attempt has been made to understand the organization and association of fibrinogen (Fg) in solvent environment induced by viscogens such as 1-ethyl 3-methyl imidazolium ethyl sulfate (IL-emes), Ficoll, and Trehalose. The author observed that Fg in IL-emes adsorbed on solid surface shows higher ß-sheet conformation. Shear viscosity measured using quartz crystal microbalance, for Fg in IL-emes was highest with a corresponding higher adsorbed mass 3.26 µg/cm(2). Associated assemblies of the protein at the liquid/air interface were monitored with changes in surface tension and were used to calculate work of adhesion. Changes in work of adhesion were used as a tool to measure the adsorption of Fg to solid surfaces in presence of viscogens and highest adsorption was observed for hydrophilic surfaces. Scanning electron microscopy images show Fg in trehalose forms elongated bead like structures implying organization of the protein at the interface. Crowding in the solvent environment induced by viscogens can slow down organization of Fg, leading to macromolecular assemblies near the interface.


Sujet(s)
Fibrinogène/métabolisme , Ficoll/métabolisme , Imidazoles/métabolisme , Structures macromoléculaires/métabolisme , Multimérisation de protéines/effets des médicaments et des substances chimiques , Tréhalose/métabolisme , Animaux , Bovins , Microscopie électronique à balayage , Viscosité
11.
Phys Chem Chem Phys ; 17(13): 8338-48, 2015 Apr 07.
Article de Anglais | MEDLINE | ID: mdl-25406896

RÉSUMÉ

The cellular environment determines the structure and function of proteins. Marginal changes of the environment can severely affect the energy landscape of protein folding. However, despite the important role of chaperones on protein folding, less is known about chaperonal modulation of protein aggregation and fibrillation considering different classes of chaperones. We find that the pharmacological chaperone O4, the chemical chaperone proline as well as the protein chaperone serum amyloid P component (SAP) are inhibitors of the type 2 diabetes mellitus-related aggregation process of islet amyloid polypeptide (IAPP). By applying biophysical methods such as thioflavin T fluorescence spectroscopy, fluorescence anisotropy, total reflection Fourier-transform infrared spectroscopy, circular dichroism spectroscopy and atomic force microscopy we analyse and compare their inhibition mechanism. We demonstrate that the fibrillation reaction of human IAPP is strongly inhibited by formation of globular, amorphous assemblies by both, the pharmacological and the protein chaperones. We studied the inhibition mechanism under cell-like conditions by using the artificial crowding agents Ficoll 70 and sucrose. Under such conditions the suppressive effect of proline was decreased, whereas the pharmacological chaperone remains active.


Sujet(s)
Polypeptide amyloïde des ilots/métabolisme , Chaperons moléculaires/métabolisme , Dichroïsme circulaire , Dextrane/composition chimique , Dextrane/métabolisme , Ficoll/composition chimique , Ficoll/métabolisme , Humains , Polypeptide amyloïde des ilots/antagonistes et inhibiteurs , Microscopie à force atomique , Chaperons moléculaires/composition chimique , Oxazines/composition chimique , Oxazines/métabolisme , Polyéthylène glycols/composition chimique , Polyéthylène glycols/métabolisme , Proline/composition chimique , Proline/métabolisme , Structure secondaire des protéines , Composant sérique amyloïde P/composition chimique , Composant sérique amyloïde P/métabolisme , Spectrométrie de fluorescence , Spectroscopie infrarouge à transformée de Fourier , Saccharose/composition chimique , Saccharose/métabolisme , Thermodynamique
12.
J Immunol Methods ; 412: 70-7, 2014 Oct.
Article de Anglais | MEDLINE | ID: mdl-25017507

RÉSUMÉ

In vitro assessment of the functional responses of leukocytes sometimes requires their isolation from blood, joint and tissues. In this study, we compared the efficiency of two procedures - the gelatin method and Ficoll-Hypaque density centrifugation gradient - to isolate peripheral blood neutrophils of healthy individuals and patients with active rheumatoid arthritis (RA). We also assessed whether these procedures affect the neutrophil activation status. Both purification procedures were concluded in 90min, and yielded cell populations with similar degrees of purity (80-90%), number of neutrophils (1-2×10(6) cells per mL of blood), and viability (97-100%). In vitro neutrophil priming with granulocyte-macrophage colony-stimulating factor (GM-CSF) significantly increased the reactive oxygen species producing ability of the cells stimulated with n-formyl-methionyl-leucyl-phenylalanine (n-fMLP), soluble immune complexes (s-ICs), and insoluble immune complexes (i-ICs). Isolated neutrophils not treated with GM-CSF responded to n-fMLP and i-IC, but not to s-IC. Almost all of the neutrophils (98-100%) purified by both methods expressed FcγRII/CD32 and FcγRIII/CD16, but they did not express significant levels of FcγRI/CD64. Similar results were obtained for healthy individuals' and RA patients' neutrophils. In summary, the gelatin method was comparable to Ficoll-Hypaque gradient in terms of purity, yield, and viability of the neutrophil preparations. Both methods neither primed or activated the neutrophils, nor affected their functional responsiveness. Therefore, both methods are suitable to isolate peripheral blood neutrophils of healthy individuals and RA patients.


Sujet(s)
Polyarthrite rhumatoïde/diagnostic , Séparation cellulaire/méthodes , Ficoll/métabolisme , Gélatine/métabolisme , Granulocytes neutrophiles/métabolisme , Récepteurs du fragment Fc des IgG/métabolisme , Complexe antigène-anticorps/immunologie , Polyarthrite rhumatoïde/anatomopathologie , Numération cellulaire , Survie cellulaire , Facteur de stimulation des colonies de granulocytes et de macrophages/immunologie , Humains , N-Formyl-méthionyl-leucyl-phénylalanine/immunologie , Activation des neutrophiles , Granulocytes neutrophiles/anatomopathologie , Stress oxydatif , Récepteurs du fragment Fc des IgG/génétique
13.
Am J Physiol Renal Physiol ; 306(8): F844-54, 2014 Apr 15.
Article de Anglais | MEDLINE | ID: mdl-24523389

RÉSUMÉ

In the present study, an extended two-pore theory is presented where the porous pathways are continuously distributed according to small- and large-pore mean radii and SDs. Experimental glomerular sieving data for Ficoll were analyzed using the model. In addition, several theoretical findings are presented along with analytic solutions to many of the equations used in distributed pore modeling. The results of the data analysis revealed a small-pore population in the glomerular capillary wall with a mean radius of 36.6 Å having a wide arithmetic SD of ∼5 Å and a large-pore radius of 98.6 Å with an even wider SD of ∼44 Å. The small-pore radius obtained in the analysis was close to that of human serum albumin (35.5 Å). By reanalyzing the data and setting the distribution spread of the model constant, we discovered that a narrow distribution is compensated by an increased mean pore radius and a decreased pore area-to-diffusion length ratio. The wide distribution of pore sizes obtained in the present analysis, even when considering electrostatic hindrance due to the negatively charged barrier, is inconsistent with the high selectivity to proteins typically characterizing the glomerular filtration barrier. We therefore hypothesize that a large portion of the variance in the distribution of pore sizes obtained is due to the molecular "flexibility" of Ficoll, implying that the true variance of the pore system is lower than that obtained using flexible probes. This would also, in part, explain the commonly noted discrepancy between the pore area-to-diffusion length ratio and the filtration coefficient.


Sujet(s)
Ficoll/métabolisme , Glomérule rénal/physiologie , Animaux , Diffusion , Barrière de filtration glomérulaire , Humains , Modèles biologiques , Modèles théoriques , Rats
14.
J Am Chem Soc ; 135(32): 11929-34, 2013 Aug 14.
Article de Anglais | MEDLINE | ID: mdl-23941183

RÉSUMÉ

Macromolecular crowding affects most chemical equilibria in living cells, as the presence of high concentrations of macromolecules sterically restricts the available space. Here, we characterized the influence of crowding on a prototypical RTX protein, RC(L). RTX (Repeat in ToXin) motifs are calcium-binding nonapeptide sequences that are found in many virulence factors produced by Gram-negative bacteria and secreted by dedicated type 1 secretion systems. RC(L) is an attractive model to investigate the effect of molecular crowding on ligand-induced protein folding, as it shifts from intrinsically disordered conformations (apo-form) to a stable structure upon calcium binding (holo-form). It thus offers the rare opportunity to characterize the crowding effects on the same polypeptide chain under two drastically distinct folding states. We showed that the crowding agent Ficoll70 did not affect the structural content of the apo-state and holo-state of RC(L) but increased the protein affinity for calcium. Moreover, Ficoll70 strongly stabilized both states of RC(L), increasing their half-melting temperature, without affecting enthalpy changes. The power law dependence of the melting temperature increase (ΔT(m)) on the volume fraction (φ) followed theoretical excluded volume predictions and allowed the estimation of the Flory exponent (ν) of the thermally unfolded polypeptide chain in both states. Altogether, our data suggest that, in the apo-state as found in the crowded bacterial cytosol, RTX proteins adopt extended unfolded conformations that may facilitate protein export by the type I secretion machinery. Subsequently, crowding also enhances the calcium-dependent folding and stability of RTX proteins once secreted in the extracellular milieu.


Sujet(s)
Toxine d'adénylate cyclase/composition chimique , Bordetella pertussis/composition chimique , Toxine d'adénylate cyclase/métabolisme , Bordetella pertussis/métabolisme , Calcium/métabolisme , Ficoll/métabolisme , Liaison aux protéines , Conformation des protéines , Pliage des protéines , Stabilité protéique , Coqueluche/microbiologie
15.
Sci Rep ; 3: 1811, 2013.
Article de Anglais | MEDLINE | ID: mdl-23657205

RÉSUMÉ

Existence of G-quadruplex DNA in vivo always attract widespread interest in the field of biology and biological chemistry. We reported our findings for the existence of G-quadruplex structures in promoter region of oncogenes confirmed by G-quadruplex DNA cross-linking strategy. Probes for selective G-quadruplex cross-linking was designed and synthesized that show high selectivity for G-quadruplex cross-linking. Further biological studies demonstrated its good inhibition activity against murine melanoma cells. To further investigate if G-quadruplex DNA was formed in vivo and as the target, a derivative was synthesized and pull-down process toward chromosome DNAs combined with circular dichroism and high throughput deep sequencing were performed. Several simulated intracellular conditions, including X. laevis oocytes, Ficoll 70 and PEG, was used to investigate the compound's pure cross-linking ability upon preformed G-quadruplex. Thus, as a potent G-quadruplex cross-linking agent, our strategy provided both valuable evidence of G-quadruplex structures in vivo and intense potential in anti-cancer therapy.


Sujet(s)
Réactifs réticulants/pharmacologie , ADN/composition chimique , G-quadruplexes , Oncogènes/génétique , Phénylènediamines/pharmacologie , Régions promotrices (génétique)/génétique , Bases de Schiff/pharmacologie , Animaux , Prolifération cellulaire , Dichroïsme circulaire , Test des comètes , Réactifs réticulants/synthèse chimique , ADN/génétique , ADN/métabolisme , Altération de l'ADN , Femelle , Ficoll/métabolisme , Cellules HeLa , Humains , Mélanome/génétique , Mélanome/anatomopathologie , Souris , Modèles moléculaires , Structure moléculaire , Ovocytes/cytologie , Ovocytes/effets des médicaments et des substances chimiques , Ovocytes/métabolisme , Phénylènediamines/synthèse chimique , Polyéthylène glycols/métabolisme , Régions promotrices (génétique)/effets des médicaments et des substances chimiques , Bases de Schiff/synthèse chimique , Spectrométrie de masse MALDI , Cellules cancéreuses en culture , Xenopus laevis
16.
Cryobiology ; 65(3): 289-300, 2012 Dec.
Article de Anglais | MEDLINE | ID: mdl-22940432

RÉSUMÉ

This work explores the design of a vitrification solution (VS) for scaled-up cryopreservation of hepatocytes, by adapting VS(basic) (40% (v/v) ethylene glycol 0.6M sucrose, i.e. 7.17 M ethylene glycol 0.6M sucrose), previously proven effective in vitrifying bioengineered constructs and stem cells. The initial section of the scale-up study involved the selection of non-penetrating additives to supplement VS(basic) and increase the solution's total solute concentration. This involved a systematic approach with a step-by-step elimination of non-penetrating cryoprotectants, based on their effect on cells after long/short term exposures to high/low concentrations of the additives alone or in combinations, on the attachment ability of hepatocytes after exposure. At a second stage, hepatocyte suspension was vitrified and functions were assessed after continuous culture up to 5 days. Results indicated Ficoll as the least toxic additive. Within 60 min, the exposure of hepatocytes to a solution composed of 9% Ficoll+0.6M sucrose (10⁻³ M Ficoll+0.6 M sucrose) sustained attachment efficiency of 95%, similar to control. Furthermore, this additive did not cause any detriment to the attachment of these cells when supplementing the base vitrification solution VS(basic). The addition of 9% Ficoll, raised the total solute concentration to 74.06% (w/v) with a negligible 10⁻³ M increase in molarity of the solution. This suggests main factor in inducing detriment to cells was the molar contribution of the additive. Vitrification protocol for scale-up condition sustained hepatocyte suspension attachment efficiency and albumin production. We conclude that although established approach will permit scaling-up of vitrification of hepatocyte suspension, vitrification of hepatocytes which are attached prior to vitrification is more effective by comparison.


Sujet(s)
Cryoconservation/méthodes , Hépatocytes/cytologie , Vitrification , Animaux , Adhérence cellulaire , Survie cellulaire , Cellules cultivées , Cryoprotecteurs/métabolisme , Éthylène glycol/métabolisme , Ficoll/métabolisme , Perméabilité , Rats , Saccharose/métabolisme
18.
J Phys Chem B ; 114(33): 10876-80, 2010 Aug 26.
Article de Anglais | MEDLINE | ID: mdl-20677765

RÉSUMÉ

Quantitative analysis of the composition dependence of the concentration gradient of each species of macromolecule within a solution mixture at sedimentation equilibrium permits the quantitative characterization of self- and heterointeractions between sedimenting solutes. Sedimentation equilibrium experiments were conducted on solutions containing a trace concentration of FITC-labeled BSA in varying concentrations of Ficoll 70 and on solutions containing a trace concentration of FITC-labeled Ficoll 70 in varying concentrations of BSA. The equilibrium gradient of each solute component in each mixture was measured independently. Analysis of the resulting gradients resulted in evaluation of the dependence of the activity coefficient of Ficoll upon the concentrations of Ficoll and BSA at concentrations of up to 100 g/L and the dependence of the activity coefficient of BSA upon the concentrations of Ficoll and BSA at concentrations of up to 100 g/L. The activity coefficients of both species increase significantly with increasing Ficoll and BSA concentration and do not vary with temperature, to within the precision of measurement, over the temperature range of 5-37 degrees C, indicating that the dominant interaction between Ficoll molecules and between BSA and Ficoll molecules is repulsive and probably due to steric volume exclusion. The measured dependences may be accounted for quantitatively by a simple model in which BSA and Ficoll 70 are represented by equivalent rigid particles.


Sujet(s)
Ficoll/métabolisme , Fluorescéine-5-isothiocyanate/métabolisme , Colorants fluorescents/métabolisme , Sérumalbumine bovine/métabolisme , Animaux , Bovins , Ficoll/composition chimique , Humains , Concentration en ions d'hydrogène , Modèles moléculaires , Liaison aux protéines , Conformation des protéines , Sérumalbumine bovine/composition chimique , Température , Thermodynamique
19.
Biophys J ; 99(3): 914-23, 2010 Aug 04.
Article de Anglais | MEDLINE | ID: mdl-20682270

RÉSUMÉ

The dependence of the fluorescence of catalase upon the concentration of added superoxide dismutase (SOD) indicates that SOD binds to saturable sites on catalase. The affinity of SOD for these sites varies with temperature, and with the concentration of each of three nominally inert polymeric additives--dextran 70, Ficoll 70, and polyethylene glycol 2000. At room temperature (25.0 degrees C) and higher, the addition of high concentrations of polymer is found to significantly enhance the affinity of SOD for catalase, but with decreasing temperature the enhancing effect of polymer addition diminishes, and at 8.0 degrees C, addition of polymer has little or no effect on the affinity of SOD for catalase. The results presented here provide the first experimental evidence for the existence of competition between a repulsive excluded volume interaction between protein and polymer, which tends to enhance association of dilute protein, and an attractive interaction between protein and polymer, which tends to inhibit protein association. The net effect of high concentrations of polymer upon protein associations depends upon the relative strength of these two types of interactions at the temperature of measurement, and may vary significantly between different proteins and/or polymers.


Sujet(s)
Catalase/métabolisme , Structures macromoléculaires/métabolisme , Polymères/métabolisme , Superoxide dismutase/métabolisme , Animaux , Sites de fixation , Bovins , Dextrane/métabolisme , Entropie , Ficoll/métabolisme , Fluorescence , Cinétique , Modèles moléculaires , Polyéthylène glycols/métabolisme , Liaison aux protéines , Température
20.
Am J Physiol Renal Physiol ; 297(3): F577-82, 2009 Sep.
Article de Anglais | MEDLINE | ID: mdl-19587143

RÉSUMÉ

Posttraumatic microalbuminuria may be caused by either charge- or size-selective alterations in the glomerular filtration barrier, or both, and/or to a reduction in proximal tubular protein reabsorption. This study was performed to elucidate the pathophysiology of the increases in glomerular permeability occurring in rats exposed to a laparotomy or to a laparotomy and muscle trauma. In anesthetized Wistar rats (250-280 g), the left ureter was cannulated for urine collection, while simultaneously blood access was achieved. Rats were exposed to trauma by a laparotomy (L; n = 8), or by a combination of L and muscle trauma (MT; L+MT) induced by topical blunt injury of the abdominal muscles bilaterally. After L, muscles were crushed using hemostatic forceps at either 2 x 2 sites ("small" MT; n = 9), or at 2 x 5 sites ("large" MT; n = 9). Sham groups (n = 16), not exposed to a laparotomy, were used as controls. The glomerular sieving coefficients (theta) to polydisperse FITC-Ficoll-70/400 (molecular radius 13-80 A) were determined at 5 or 60 min after L and L+MT, respectively, from plasma and urine samples, and analyzed by high-performance size-exclusion chromatography. A tissue-uptake technique was used to assess theta for (125)I-labeled serum albumin. L, with or without MT, increased theta for Ficoll(55-80A) and albumin rapidly and markedly. Theta-Ficoll(70A) thus increased approximately threefold, and theta for albumin significantly, for all trauma groups. According to the "two-pore model" of glomerular permeability, these changes mainly reflect an increase in the number of large pores in the glomerular filter without any primary changes in the charge-selective properties of the filter.


Sujet(s)
Muscles abdominaux/traumatismes , Albuminurie/métabolisme , Débit de filtration glomérulaire , Glomérule rénal/métabolisme , Plaies non pénétrantes/métabolisme , Albuminurie/physiopathologie , Animaux , Pression sanguine , Perméabilité capillaire , Procédures chirurgicales dermatologiques , Modèles animaux de maladie humaine , Ficoll/analogues et dérivés , Ficoll/métabolisme , Fluorescéine-5-isothiocyanate/analogues et dérivés , Fluorescéine-5-isothiocyanate/métabolisme , Rythme cardiaque , Radio-isotopes de l'iode , Glomérule rénal/vascularisation , Glomérule rénal/physiopathologie , Laparotomie , Mâle , Modèles biologiques , Masse moléculaire , Rats , Rat Wistar , Sérumalbumine/métabolisme , Facteurs temps , Plaies non pénétrantes/physiopathologie
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