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1.
Biochim Biophys Acta Mol Basis Dis ; 1870(7): 167340, 2024 10.
Article de Anglais | MEDLINE | ID: mdl-38986816

RÉSUMÉ

Classic galactosemia is an inborn error of metabolism caused by mutations in the GALT gene resulting in the diminished activity of the galactose-1-phosphate uridyltransferase enzyme. This reduced GALT activity leads to the buildup of the toxic intermediate galactose-1-phosphate and a decrease in ATP levels upon exposure to galactose. In this work, we focused our attention on mitochondrial oxidative phosphorylation in the context of this metabolic disorder. We observed that galactose-1-phosphate accumulation reduced respiratory rates in vivo and changed mitochondrial function and morphology in yeast models of galactosemia. These alterations are harmful to yeast cells since the mitochondrial retrograde response is activated as part of the cellular adaptation to galactose toxicity. In addition, we found that galactose-1-phosphate directly impairs cytochrome c oxidase activity of mitochondrial preparations derived from yeast, rat liver, and human cell lines. These results highlight the evolutionary conservation of this biochemical effect. Finally, we discovered that two compounds - oleic acid and dihydrolipoic acid - that can improve the growth of cell models of mitochondrial diseases, were also able to improve galactose tolerance in this model of galactosemia. These results reveal a new molecular mechanism relevant to the pathophysiology of classic galactosemia - galactose-1-phosphate-dependent mitochondrial dysfunction - and suggest that therapies designed to treat mitochondrial diseases may be repurposed to treat galactosemia.


Sujet(s)
Complexe IV de la chaîne respiratoire , Galactosémies , Galactose phosphate , Mitochondries , Galactosémies/métabolisme , Galactosémies/anatomopathologie , Galactosémies/génétique , Galactose phosphate/métabolisme , Humains , Animaux , Rats , Mitochondries/métabolisme , Mitochondries/anatomopathologie , Mitochondries/effets des médicaments et des substances chimiques , Complexe IV de la chaîne respiratoire/métabolisme , Complexe IV de la chaîne respiratoire/génétique , Saccharomyces cerevisiae/métabolisme , Saccharomyces cerevisiae/génétique , Phosphorylation oxydative/effets des médicaments et des substances chimiques , UTP hexose 1-phosphate uridylyltransferase/métabolisme , UTP hexose 1-phosphate uridylyltransferase/génétique , Galactose/métabolisme
2.
An Acad Bras Cienc ; 95(suppl 2): e20220619, 2023.
Article de Anglais | MEDLINE | ID: mdl-38088730

RÉSUMÉ

A new lectin from marine sponge Ircinia strobilina, denominated IsL, was isolated by combination of affinity chromatography in Guar gum matrix followed by size exclusion chromatography. IsL was able to agglutinate native and enzymatically treated rabbit erythrocytes, being inhibited by galactosides, such as α-methyl-D-galactopyranoside, ß-methyl-D-galactopyranoside and α-lactose. IsL hemagglutinating activity was stable at neutral to alkaline pH, however the lectin loses its activity at 40° C. The molecular mass determinated by mass spectrometry was 13.655 ± 5 Da. Approximately 40% of the primary structure of IsL was determined by mass spectrometry, but no similarity was observed with any protein. The secondary structure of IsL consists of 28% α-helix, 26% ß-sheet, and 46% random region, as determined by dichroism circular. IsL was a calcium-dependent lectin, but no significant variations were observed by circular dichroism when IsL was incubated in presence of calcium and EDTA. IsL was not toxic against Artemia nauplii and did not have antimicrobial activity against bacterial cells. However, the IsL was able to significantly inhibit the biofilm formation of Staphylococcus aureus and Staphylococcus epidermidis.


Sujet(s)
Lectines , Porifera , Animaux , Lapins , Lectines/pharmacologie , Galactose/métabolisme , Galactose/pharmacologie , Calcium/métabolisme , Biofilms
3.
Article de Anglais | MEDLINE | ID: mdl-37317977

RÉSUMÉ

We, herein, investigated the in vitro effects of galactose on the activity of pyruvate kinase, succinate dehydrogenase (SDH), complex II and IV (cytochrome c oxidase) of the respiratory chain and Na+K+-ATPase in the cerebral cortex, cerebellum and hippocampus of 30-day-old rats. We also determined the influence of the antioxidants, trolox, ascorbic acid and glutathione, on the effects elicited by galactose. Galactose was added to the assay at concentrations of 0.1, 3.0, 5.0 and 10.0 mM. Control experiments were performed without galactose. Galactose, at 3.0, 5.0 and 10.0 mM, decreased pyruvate kinase activity in the cerebral cortex and at 10.0 mM in the hippocampus. Galactose, at 10.0 mM, reduced SDH and complex II activities in the cerebellum and hippocampus, and reduced cytochrome c oxidase activity in the hippocampus. Additionally, decreased Na+K+-ATPase activity in the cerebral cortex and hippocampus; conversely, galactose, at 3.0 and 5.0 mM, increased this enzyme's activity in the cerebellum. Data show that galactose disrupts energy metabolism and trolox, ascorbic acid and glutathione addition prevented the majority of alterations in the parameters analyzed, suggesting the use of antioxidants as an adjuvant therapy in Classic galactosemia.


Sujet(s)
Antioxydants , Galactose , Rats , Animaux , Antioxydants/pharmacologie , Galactose/métabolisme , Galactose/pharmacologie , Complexe IV de la chaîne respiratoire , Pyruvate kinase/métabolisme , Pyruvate kinase/pharmacologie , Rat Wistar , Acide ascorbique/pharmacologie , Acide ascorbique/métabolisme , Métabolisme énergétique , Encéphale/métabolisme , Glutathion/métabolisme , Adenosine triphosphatases/métabolisme , Adenosine triphosphatases/pharmacologie
4.
Fish Shellfish Immunol ; 132: 108513, 2023 Jan.
Article de Anglais | MEDLINE | ID: mdl-36584757

RÉSUMÉ

A d-galacturonic acid-specific lectin, named AcL, was purified from the sea hare Aplysia californica by galactose-agarose affinity chromatography. AcL has a molecular mass of 27.5 kDa determined by MALDI-TOF mass spectrometry. This lectin shows a good affinity for d-galacturonic acid and a lower affinity for galactosides: raffinose, melibiose, α and ß-lactose, and d-galactose. We determined the amino acid sequence of AcL by trypsin digestion and subsequent peptide analysis by mass spectrometry, resulting in a 238 amino acid protein with a theoretical molecular mass of 26.4 kDa. The difference between the theoretical and experimental values can be attributed to post-translational modifications. Thiol-disulfide quantification discerned five disulfide bonds and three free cysteines. The structure of Acl is mainly comprised of beta sheets, determined by circular dichroism, and predicted with AlphaFold. Theoretical models depict three nearly identical tandem domains consisting of two beta sheets each. From docking analysis, we identified AcL glycan-binding sites as multiple conserved motifs in each domain. Furthermore, phylogenetic analysis based on its structure and sequence showed that AcL and its closest homologues (GalULs) form a clear monophyletic group, distinct from other glycan-binding proteins with a jelly-roll fold: lectins of types F and H. GalULs possess four conserved sequence regions that distinguish them and are either ligand-binding motifs or stabilizing network hubs. We suggest that this new family should be referred to as GalUL or D-type, following the traditional naming of lectins; D standing for depilans, the epithet for the species (Aplysia depilans) from which a lectin of this family was first isolated and described.


Sujet(s)
Aplysia , Lepus , Animaux , Aplysia/composition chimique , Aplysia/métabolisme , Lepus/métabolisme , Galectines/composition chimique , Phylogenèse , Galactose/métabolisme , Polyosides/métabolisme
5.
Plant Cell Physiol ; 63(8): 1140-1155, 2022 Aug 17.
Article de Anglais | MEDLINE | ID: mdl-35765894

RÉSUMÉ

In plants, it is well-known that ascorbic acid (vitamin C) can be synthesized via multiple metabolic pathways but there is still much to be learned concerning their integration and control mechanisms. Furthermore, the structural biology of the component enzymes has been poorly exploited. Here we describe the first crystal structure for an L-galactose dehydrogenase [Spinacia oleracea GDH (SoGDH) from spinach], from the D-mannose/L-galactose (Smirnoff-Wheeler) pathway which converts L-galactose into L-galactono-1,4-lactone. The kinetic parameters for the enzyme are similar to those from its homolog from camu camu, a super-accumulator of vitamin C found in the Peruvian Amazon. Both enzymes are monomers in solution and have a pH optimum of 7, and their activity is largely unaffected by high concentrations of ascorbic acid, suggesting the absence of a feedback mechanism acting via GDH. Previous reports may have been influenced by changes of the pH of the reaction medium as a function of ascorbic acid concentration. The structure of SoGDH is dominated by a (ß/α)8 barrel closely related to aldehyde-keto reductases (AKRs). The structure bound to NAD+ shows that the lack of Arg279 justifies its preference for NAD+ over NADP+, as employed by many AKRs. This favors the oxidation reaction that ultimately leads to ascorbic acid accumulation. When compared with other AKRs, residue substitutions at the C-terminal end of the barrel (Tyr185, Tyr61, Ser59 and Asp128) can be identified to be likely determinants of substrate specificity. The present work contributes toward a more comprehensive understanding of structure-function relationships in the enzymes involved in vitamin C synthesis.


Sujet(s)
Galactose dehydrogenases , Galactose , Acide ascorbique/métabolisme , Galactose/métabolisme , Galactose dehydrogenases/métabolisme , Mannose/métabolisme , NAD
6.
Biochim Biophys Acta Mol Basis Dis ; 1868(6): 166389, 2022 06 01.
Article de Anglais | MEDLINE | ID: mdl-35301088

RÉSUMÉ

Classic galactosemia is an inborn error of metabolism caused by deleterious mutations on the GALT gene, which encodes the Leloir pathway enzyme galactose-1-phosphate uridyltransferase. Previous studies have shown that the endoplasmic reticulum unfolded protein response (UPR) is relevant to galactosemia, but the molecular mechanism behind the endoplasmic reticulum stress that triggers this response remains elusive. In the present work, we show that the activation of the UPR in yeast models of galactosemia does not depend on the binding of unfolded proteins to the ER stress sensor protein Ire1p since the protein domain responsible for unfolded protein binding to Ire1p is not necessary for UPR activation. Interestingly, myriocin - an inhibitor of the de novo sphingolipid synthesis pathway - inhibits UPR activation and causes galactose hypersensitivity in these models, indicating that myriocin-mediated sphingolipid depletion impairs yeast adaptation to galactose toxicity. Supporting the interpretation that the effects observed after myriocin treatment were due to a reduction in sphingolipid levels, the addition of phytosphingosine to the culture medium reverses all myriocin effects tested. Surprisingly, constitutively active UPR signaling did not prevent myriocin-induced galactose hypersensitivity suggesting multiple roles for sphingolipids in the adaptation of yeast cells to galactose toxicity. Therefore, we conclude that sphingolipid homeostasis has an important role in UPR activation and cellular adaptation in yeast models of galactosemia, highlighting the possible role of lipid metabolism in the pathophysiology of this disease.


Sujet(s)
Galactosémies , Galactose/métabolisme , Galactose/pharmacologie , Galactosémies/métabolisme , Humains , Saccharomyces cerevisiae/génétique , Saccharomyces cerevisiae/métabolisme , Sphingolipides/métabolisme , UTP hexose 1-phosphate uridylyltransferase/métabolisme
7.
J Phycol ; 58(3): 406-423, 2022 06.
Article de Anglais | MEDLINE | ID: mdl-35090189

RÉSUMÉ

Gracilariales is a clade of florideophycean red macroalgae known for being the main source of agar. We present a de novo genome assembly and annotation of Gracilaria domingensis, an agarophyte alga with flattened thallus widely distributed along Central and South American Atlantic intertidal zones. In addition to structural analysis, an organizational comparison was done with other Rhodophyta genomes. The nuclear genome has 78 Mbp, with 11,437 predicted coding genes, 4,075 of which did not have hits in sequence databases. We also predicted 1,567 noncoding RNAs, distributed in 14 classes. The plastid and mitochondrion genome structures were also obtained. Genes related to agar synthesis were identified. Genes for type II galactose sulfurylases could not be found. Genes related to ascorbate synthesis were found. These results suggest an intricate connection of cell wall polysaccharide synthesis and the redox systems through the use of L-galactose in Rhodophyta. The genome of G. domingensis should be valuable to phycological and aquacultural research, as it is the first tropical and Western Atlantic red macroalgal genome to be sequenced.


Sujet(s)
Génome mitochondrial , Gracilaria , Rhodophyta , Agar-agar/métabolisme , Galactose/métabolisme , Gracilaria/génétique , Rhodophyta/génétique , Rhodophyta/métabolisme
8.
J Appl Microbiol ; 130(3): 865-877, 2021 Mar.
Article de Anglais | MEDLINE | ID: mdl-32741059

RÉSUMÉ

AIMS: Optimization of ß-galactosidase production by Trichoderma sp. under solid-state fermentation using wheat bran as solid substrate through an experimental design and its application targeting the recovery of galactooligosaccharides (GOS) from whey cheese. METHODS AND RESULTS: The ß-galactosidase production by Trichoderma sp. increased 2·3-fold (2·67 U g-1 of substrate) culturing the fungus at 30°C for 187 h, at an inoculum of 105 spores per ml, and a 1 : 1·65 (w/v) ratio of wheat bran to tap water. The best enzyme activity was obtained at 55°C and pH 4·5. The catalytic activity was maintained for up to 180 min incubating at 35-45°C, and above 50% at acidic or alkaline pH for up to 24 h. It also presented resistance to chemical compounds. ß-galactosidase catalysed the hydrolysis of the lactose and the transgalactosylation reaction leading to the production of GOS. CONCLUSION: Trichoderma sp. produced ß-galactosidase with transgalactosylation activity that may be used to recover GOS, products with high added value, from whey cheese. SIGNIFICANCE AND IMPACT OF THE STUDY: ß-galactosidases are used in different industrial sectors. Therefore, the Trichoderma ß-galactosidase is a promising alternative for the production of GOS as prebiotic from the dairy effluents, contributing to the reduction in the environmental impact.


Sujet(s)
Galactose/métabolisme , Oligosaccharides/métabolisme , Trichoderma/métabolisme , Lactosérum/métabolisme , beta-Galactosidase/métabolisme , Fromage , Fibre alimentaire/métabolisme , Fermentation , Glycosylation , Hydrolyse , Lactose/métabolisme , Prébiotiques , Lactosérum/composition chimique
9.
Int J Biol Macromol ; 168: 676-685, 2021 Jan 31.
Article de Anglais | MEDLINE | ID: mdl-33220373

RÉSUMÉ

Egletes viscosa is a plant with therapeutic value due to its antibacterial, antinociceptive and gastroprotective properties. This study aimed to purify, characterize, and evaluate the cytotoxicity of a lectin (EgviL) from the floral capitula of E. viscosa. The lectin was isolated from saline extract through precipitation with ammonium sulfate followed by Sephadex G-75 chromatography. The molecular mass and isoelectric point (pI) of EgviL were determined as well as its temperature and pH stability. Physical-chemical parameters of interaction between EgviL and carbohydrates were investigated by fluorescence quenching and 1H nuclear magnetic resonance (NMR). Cytotoxicity was investigated against human peripheral blood mononuclear cells (PBMCs) and neoplastic cells. EgviL (28.8 kDa, pI 5.4) showed hemagglutinating activity stable towards heating until 60 °C and at the pH range 5.0-7.0. This lectin is able to interact through hydrophobic and electrostatic bonds with galactose and glucose, respectively. EgviL reduced the viability of PBMCs only at the highest concentration tested (100 µg/mL) while was toxic to Jurkat E6-1 cells with IC50 of 24.1 µg/mL,inducing apoptosis. In summary, EgviL is a galactose/glucose-binding protein with acidic character, stable to heating and with cytotoxic effect on leukemic cells.


Sujet(s)
Antinéoplasiques d'origine végétale/pharmacologie , Asteraceae/composition chimique , Agranulocytes/cytologie , Lectines végétales/pharmacologie , Antinéoplasiques d'origine végétale/composition chimique , Prolifération cellulaire/effets des médicaments et des substances chimiques , Survie cellulaire/effets des médicaments et des substances chimiques , Précipitation chimique , Stabilité de médicament , Galactose/métabolisme , Glucose/métabolisme , Tests d'hémagglutination , Humains , Interactions hydrophobes et hydrophiles , Concentration inhibitrice 50 , Point isoélectrique , Cellules Jurkat , Agranulocytes/effets des médicaments et des substances chimiques , Cellules MCF-7 , Lectines végétales/composition chimique
10.
Food Funct ; 11(7): 5875-5886, 2020 Jul 01.
Article de Anglais | MEDLINE | ID: mdl-32578654

RÉSUMÉ

Galactooligosaccharides (GOS) are useful dietary ingredients recognized worldwide as prebiotics. In the present study, we evaluated the ß-galactosidase (ß-gal) activity of a panel of lactic acid bacteria (LAB) in order to select strains for the synthesis of oligosaccharides from lactose (GOS) and lactulose (OsLu) with a potential prebiotic effect. Fifteen strains out of 20 were able to grow on lactose and showed ß-gal activities between 0.03 and 2.06 U mg-1, whereas eleven were able to synthesize GOS. Lactobacillus delbrueckii subsp. bulgaricus CRL450, the strain with the highest ß-gal activity, synthesized a maximum of 41.3% GOS and 21.0% OsLu from lactose and lactulose, respectively, with ß-(1 → 6) and secondary ß-(1 → 3) linkages. When these compounds were tested without purifying, as carbon sources for the development of recognized probiotics and the producer strain, high growth was observed compared to non-prebiotic sugars like glucose and lactose. When the purified oligosaccharides were tested, the bacterial growth decreased, but the microorganisms displayed metabolic activity evidenced by the consumption of carbohydrates and the production of lactic acid. Additionally, the purified oligosaccharides demonstrated a bifidogenic effect. The obtained results support the potential of L. delbrueckii subsp. bulgaricus CRL450 for the production of the prebiotics GOS and OsLu and encourage the optimization of their synthesis for the design of new functional food ingredients.


Sujet(s)
Fermentation , Galactose/métabolisme , Lactobacillus delbrueckii/métabolisme , Lactose/métabolisme , Lactulose/métabolisme , Oligosaccharides/biosynthèse , Prébiotiques , Humains , Probiotiques , beta-Galactosidase/métabolisme
11.
Ultrason Sonochem ; 67: 104945, 2020 Oct.
Article de Anglais | MEDLINE | ID: mdl-32278244

RÉSUMÉ

It is well known that one of the main problems in galactooligosaccharide production (GOS) via tranglycosylation of lactose is the presence of monosaccharides that contribute to increasing the glycaemic index, as is the case of glucose. In this work, as well as studying the effect of ultrasound (US) on glucose oxidase (Gox) activation during gluconic acid (GA) production, we have carried out an investigation into the selective oxidation of glucose to gluconic acid in multienzymatic reactions (ß-galactosidase (ß-gal) and Gox) assisted by power US using different sources of lactose as substrate (lactose solution, whey permeate, cheese whey). In terms of the influence of matrix on GOS and GA production, lactose solution gave the best results, followed by cheese whey and whey permeate, salt composition being the most influential factor. The highest yields of GOS production with the lowest glucose concentration and highest GA production were obtained with lactose solution in multienzymatic systems in the presence of ultrasound (30% amplitude) when Gox was added after 1 h of treatment with ß-gal. This work demonstrates the ability of US to enhance efficiently the obtainment of prebiotic mixtures of low glycaemic index.


Sujet(s)
Enzymes/métabolisme , Galactose/métabolisme , Gluconates/métabolisme , Lactose/métabolisme , Oligosaccharides/métabolisme , Sonication , Lactosérum/composition chimique , Prébiotiques
12.
Planta ; 251(2): 54, 2020 Jan 22.
Article de Anglais | MEDLINE | ID: mdl-31970534

RÉSUMÉ

MAIN CONCLUSION: Reduced GDP-L-galactose phosphorylase expression and deficiency of ascorbic acid content lead to decreased fruit set and yield in tomato plants. Reduced GDP-L-galactose phosphorylase expression and deficiency of ascorbic acid content lead to decreased fruit set and yield in tomato plants. GDP-L-galactose phosphorylase (GGP) catalyzes the first step committed to ascorbic acid synthesis. The participation of GDP-L-galactose phosphorylase and ascorbate in tomato fruit production and quality was studied in this work using two SlGGP1 deficient EMS Micro-Tom mutants. The SlGGP1 mutants display decreased concentrations of ascorbate in roots, leaves, flowers, and fruit. The initiation of anthesis is delayed in ggp1 plants but the number of flowers is similar to wild type. The number of fruits is reduced in ggp1 mutants with an increased individual weight. However, the whole fruit biomass accumulation is reduced in both mutant lines. Fruits of the ggp1 plants produce more ethylene and show higher firmness and soluble solids content than the wild type after the breaker stage. Leaf CO2 uptake decreases about 50% in both ggp1 mutants at saturating light conditions; however, O2 production in an enriched CO2 atmosphere is only 19% higher in wild type leaves. Leaf conductance that is largely reduced in both mutants may be the main limitation for photosynthesis. Sink-source assays and hormone concentration were measured to determine restrictions to fruit yield. Manipulation of leaf area/fruit number relationship demonstrates that the number of fruits and not the provision of photoassimilates from the source restricts biomass accumulation in the ggp1 lines. The lower gibberellins concentration measured in the flowers would contribute to the lower fruit set, thus impacting in tomato yield. Taken as a whole these results demonstrate that ascorbate biosynthetic pathway critically participates in tomato development and fruit production.


Sujet(s)
Acide ascorbique/biosynthèse , Fruit/enzymologie , Fruit/croissance et développement , Galactose/métabolisme , Guanosine diphosphate/métabolisme , Phosphoric monoester hydrolases/déficit , Protéines végétales/métabolisme , Solanum lycopersicum/enzymologie , Biomasse , Gaz/métabolisme , Solanum lycopersicum/croissance et développement , Mutation/génétique , Photosynthèse , Feuilles de plante/métabolisme , Analyse en composantes principales
13.
J Biol Chem ; 295(12): 3773-3782, 2020 03 20.
Article de Anglais | MEDLINE | ID: mdl-31996377

RÉSUMÉ

In the presence of galactose, lithium ions activate the unfolded protein response (UPR) by inhibiting phosphoglucomutase activity and causing the accumulation of galactose-related metabolites, including galactose-1-phosphate. These metabolites also accumulate in humans who have the disease classic galactosemia. Here, we demonstrate that Saccharomyces cerevisiae yeast strains harboring a deletion of UBX4, a gene encoding a partner of Cdc48p in the endoplasmic reticulum-associated degradation (ERAD) pathway, exhibit delayed UPR activation after lithium and galactose exposure because the deletion decreases galactose-1-phosphate levels. The delay in UPR activation did not occur in yeast strains in which key ERAD or proteasomal pathway genes had been disrupted, indicating that the ubx4Δ phenotype is ERAD-independent. We also observed that the ubx4Δ strain displays decreased oxygen consumption. The inhibition of mitochondrial respiration was sufficient to diminish galactose-1-phosphate levels and, consequently, affects UPR activation. Finally, we show that the deletion of the AMP-activated protein kinase ortholog-encoding gene SNF1 can restore the oxygen consumption rate in ubx4Δ strain, thereby reestablishing galactose metabolism, UPR activation, and cellular adaption to lithium-galactose challenge. Our results indicate a role for Ubx4p in yeast mitochondrial function and highlight that mitochondrial and endoplasmic reticulum functions are intertwined through galactose metabolism. These findings also shed new light on the mechanisms of lithium action and on the pathophysiology of galactosemia.


Sujet(s)
Galactose/pharmacologie , Protéines et peptides de signalisation intracellulaire/métabolisme , Lithium/pharmacologie , Mitochondries/métabolisme , Protéines de Saccharomyces cerevisiae/métabolisme , Saccharomyces cerevisiae/métabolisme , Réponse aux protéines mal repliées/effets des médicaments et des substances chimiques , Facteurs de transcription à motif basique et à glissière à leucines/génétique , Facteurs de transcription à motif basique et à glissière à leucines/métabolisme , Réticulum endoplasmique/métabolisme , Galactose/métabolisme , Galactose phosphate/métabolisme , Protéines et peptides de signalisation intracellulaire/déficit , Protéines et peptides de signalisation intracellulaire/génétique , Consommation d'oxygène , Protein-Serine-Threonine Kinases/déficit , Protein-Serine-Threonine Kinases/génétique , Épissage des ARN , Protéines de répression/génétique , Protéines de répression/métabolisme , Protéines de Saccharomyces cerevisiae/génétique
14.
Electron. j. biotechnol ; Electron. j. biotechnol;40: 78-83, July. 2019. tab, graf, ilus
Article de Anglais | LILACS | ID: biblio-1053493

RÉSUMÉ

Background: Mathematical modeling is useful in the analysis, prediction, and optimization of an enzymatic process. Unlike the conventional modeling methods, Monte Carlo method has special advantages in providing representations of the molecule's spatial distribution. However, thus far, Monte Carlo modeling of enzymatic system is namely based on unimolecular basis, not suitable for practical applications. In this research, Monte Carlo modeling is performed for enzymatic hydrolysis of lactose for the purpose of real-time applications. Results: The enzyme hydrolysis of lactose, which is conformed to Michaelis­Menten kinetics, is modeled using the Monte Carlo modeling method, and the simulation results prove that the model predicts the reaction kinetics very well. Conclusions: Monte Carlo modeling method can be used to model enzymatic reactions in a simple way for real-time applications.


Sujet(s)
Méthode de Monte Carlo , Enzymes/métabolisme , Hydrolyse , Lactose/métabolisme , Facteurs temps , Cinétique , beta-Galactosidase/métabolisme , Enzymes immobilisées , Galactose/métabolisme
15.
Mol Biotechnol ; 61(9): 633-649, 2019 Sep.
Article de Anglais | MEDLINE | ID: mdl-31177409

RÉSUMÉ

Galactose oxidase catalyzes a two-electron oxidation, mainly from the C6 hydroxyl group of D-galactose, with the concomitant reduction of water to hydrogen peroxide. This enzyme is secreted by Fusarium species and has several biotechnological applications. In this study, a screening of galactose oxidase production among species of the Fusarium fujikuroi species complex demonstrated Fusarium subglutinans to be the main producer. The truncated F. subglutinans gaoA gene coding for the mature galactose oxidase was expressed from the prokaryotic vector pTrcHis2B in the E. coli Rosetta™ (DE3) strain. The purified recombinant enzyme presented temperature and pH optima of 30 °C and 7.0, respectively, KM of 132.6 ± 18.18 mM, Vmax of 3.2 ± 0.18 µmol of H2O2/min, kcat of 12,243 s-1, and a catalytic efficiency (kcat/KM) of 9.2 × 104 M-1 s-1. In the presence of 50% glycerol, the enzyme showed a T50 of 59.77 °C and was stable for several hours at pH 8.0 and 4 °C. Besides D-(+)-galactose, the purified enzyme also acted against D-(+)-raffinose, α-D-(+)-melibiose, and methyl-α-D-galactopyranoside, and was strongly inhibited by SDS. Although the F. subglutinans gaoA gene was successfully expressed in E. coli, its endogenous transcription was not confirmed by RT-PCR.


Sujet(s)
Fusarium/enzymologie , Galactose oxidase/métabolisme , Galactose/composition chimique , Protéines recombinantes/métabolisme , Séquence d'acides aminés , Clonage moléculaire , Escherichia coli/génétique , Escherichia coli/métabolisme , Fusarium/composition chimique , Galactose/métabolisme , Galactose oxidase/composition chimique , Galactose oxidase/génétique , Expression des gènes , Vecteurs génétiques/composition chimique , Vecteurs génétiques/métabolisme , Concentration en ions d'hydrogène , Melibiose/composition chimique , Melibiose/métabolisme , Méthylgalactoside/composition chimique , Méthylgalactoside/métabolisme , Modèles moléculaires , Oxydoréduction , Structure en hélice alpha , Structure en brin bêta , Raffinose/composition chimique , Raffinose/métabolisme , Protéines recombinantes/composition chimique , Protéines recombinantes/génétique , Alignement de séquences , Similitude de séquences d'acides aminés , Spécificité du substrat , Température
16.
Biotechnol Lett ; 41(6-7): 779-788, 2019 Jul.
Article de Anglais | MEDLINE | ID: mdl-31065855

RÉSUMÉ

OBJECTIVE: Over-express galactokinase (Galk1) in tissue plasminogen activator (tPA) producing CHO cells as a potential strategy to improve cell growth and product synthesis. RESULTS: tPA producing CHO cells were transfected with the galactokinase (Galk1) gene. CHO-Galk1 cells showed a 39% increase of the specific growth rate in galactose. Moreover, clones were able to use this hexose as their main carbon source to sustain growth contrary to their parental cell line. Metabolic Flux Analysis revealed that the CHO-Galk1 selected clone shows an active metabolism towards biomass and product synthesis, characterized by higher fluxes in the TCA cycle, which is consistent with increased cellular densities and final product concentration. CONCLUSION: This cellular engineering strategy, where modifications of key points of alternative carbon sources metabolism lead to an improved metabolism of these sugars, is a starting point towards the generation of new cell lines with reduced lactate synthesis and increased cell growth and productivity.


Sujet(s)
Cellules CHO/métabolisme , Ingénierie cellulaire/méthodes , Galactose/métabolisme , Lactates/métabolisme , Protéines recombinantes/biosynthèse , Activateur tissulaire du plasminogène/biosynthèse , Animaux , Carbone/métabolisme , Cricetulus , Galactokinase/génétique , Galactokinase/métabolisme , Expression des gènes
17.
Mol Biotechnol ; 61(6): 385-399, 2019 Jun.
Article de Anglais | MEDLINE | ID: mdl-30919326

RÉSUMÉ

D-Tagatose is a ketohexose, which presents unique properties as a low-calorie functional sweetener possessing a sweet flavor profile similar to D-sucrose and having no aftertaste. Considered a generally recognized as safe (GRAS) substance by FAO/WHO, D-tagatose can be used as an intermediate for the synthesis of other optically active compounds as well as an additive in detergent, cosmetic, and pharmaceutical formulations. This study reports important features for L-arabinose isomerase (EC 5.3.1.4) (L-AI) use in industry. We describe arabinose (araA) gene virulence analysis, gene isolation, sequencing, cloning, and heterologous overexpression of L-AI from the food-grade GRAS bacterium Enterococcus faecium DBFIQ E36 in Escherichia coli and assess biochemical properties of this recombinant enzyme. Recombinant L-AI (rL-AI) was one-step purified to homogeneity by Ni2+-agarose resin affinity chromatography and biochemical characterization revealed low identity with both thermophilic and mesophilic L-AIs but high degree of conservation in residues involved in substrate recognition. Optimal conditions for rL-AI activity were 50 °C, pH 5.5, and 0.3 mM Mn2+, exhibiting a low cofactor concentration requirement and an acidic optimum pH. Half-life at 45 °C and 50 °C were 1427 h and 11 h, respectively, and 21.5 h and 39.5 h at pH 4.5 and 5.6, respectively, showing the high stability of the enzyme in the presence of a metallic cofactor. Bioconversion yield for D-tagatose biosynthesis was 45% at 50 °C after 48 h. These properties highlight the technological potential of E. faecium rL-AI as biocatalyst for D-tagatose production.


Sujet(s)
Aldose-ketose isomerases/métabolisme , Protéines bactériennes/métabolisme , Enterococcus faecium/enzymologie , Galactose/métabolisme , Hexose/biosynthèse , Aldose-ketose isomerases/génétique , Séquence d'acides aminés , Protéines bactériennes/génétique , Cations divalents , Clonage moléculaire , Coenzymes/métabolisme , Enterococcus faecium/génétique , Dosages enzymatiques , Stabilité enzymatique , Escherichia coli/génétique , Escherichia coli/métabolisme , Expression des gènes , Vecteurs génétiques/composition chimique , Vecteurs génétiques/métabolisme , Température élevée , Concentration en ions d'hydrogène , Cinétique , Manganèse/métabolisme , Protéines recombinantes/génétique , Protéines recombinantes/métabolisme , Alignement de séquences , Similitude de séquences d'acides aminés , Spécificité du substrat
18.
J Chem Inf Model ; 59(2): 809-817, 2019 02 25.
Article de Anglais | MEDLINE | ID: mdl-30608160

RÉSUMÉ

The enzyme UDP-galactopyranose mutase (UGM) represents a promising drug target for the treatment of infections with Trypanosoma cruzi. We have computed the Potential of Mean Force for the release of UDP-galactopyranose from UGM, using Umbrella Sampling simulations. The simulations revealed the conformational changes that both substrate and enzyme undergo during the process. It was determined that the galactopyranose portion of the substrate is highly mobile and that the opening/closing of the active site occurs in stages. Previously uncharacterized interactions with highly conserved residues were also identified. These findings provide new pieces of information that contribute to the rational design of drugs against T. cruzi.


Sujet(s)
Intramolecular transferases/composition chimique , Intramolecular transferases/métabolisme , Simulation de dynamique moléculaire , Trypanosoma cruzi/enzymologie , Domaine catalytique , Galactose/métabolisme , Cinétique
19.
Antonie Van Leeuwenhoek ; 112(2): 211-223, 2019 Feb.
Article de Anglais | MEDLINE | ID: mdl-30132191

RÉSUMÉ

The pattern of glucose repression in most Kluyveromyces marxianus strains does not correlate with fermentative behaviour; however, glucose repression and fermentative metabolism appear to be linked to the kinetics of sugar uptake. In this work, we show that lactose transport in K. marxianus CCT 7735 by lactose-grown cells is mediated by a low-affinity H+-sugar symporter. This system is glucose repressed and able to transport galactose with low affinity. We also observed the activity of a distinct lactose transporter in response to raffinose. Regarding glucose uptake, specificities of at least three low-affinity systems rely on the carbon source available in a given growth medium. Interestingly, it was observed only one high-affinity system is able to transport both glucose and galactose. We also showed that K. marxianus CCT 7735 regulates the expression of sugar transport systems in response to glucose availability.


Sujet(s)
Kluyveromyces/métabolisme , Transport biologique , Milieux de culture/composition chimique , Milieux de culture/métabolisme , Protéines fongiques/génétique , Protéines fongiques/métabolisme , Galactose/métabolisme , Glucose/métabolisme , Cinétique , Kluyveromyces/composition chimique , Kluyveromyces/génétique , Lactose/métabolisme , Transporteurs de monosaccharides/génétique , Transporteurs de monosaccharides/métabolisme
20.
Cell Tissue Res ; 375(2): 507-529, 2019 Feb.
Article de Anglais | MEDLINE | ID: mdl-30259139

RÉSUMÉ

The subcommissural organ (SCO) is an ancient and conserved brain gland secreting into cerebrospinal fluid (CSF) glycoproteins that form the Reissner fiber (RF). The present investigation was designed to further investigate the dynamic of the biosynthetic process of RF glycoproteins prior and after their release into the CSF, to identify the RF proteome and N-glycome and to clarify the mechanism of assembly of RF glycoproteins. Various methodological approaches were used: biosynthetic labelling injecting 35S-cysteine and 3H-galactose into the CSF, injection of antibodies against galectin-1 into the cerebrospinal fluid, light and electron microscopical methods; isolated bovine RF was used for proteome analyses by mass spectrometry and glycome analysis by xCGE-LIF. The biosynthetic labelling study further supported that a small pool of SCO-spondin molecules rapidly enter the secretory pathways after its synthesis, while most of the SCO-spondin molecules are stored in the rough endoplasmic reticulum for hours or days before entering the secretory pathway and being released to assemble into RF. The proteomic analysis of RF revealed clusterin and galectin-1 as partners of SCO-spondin; the in vivo use of anti-galectin-1 showed that this lectin is essential for the assembly of RF. Galectin-1 is not secreted by the SCO but evidence was obtained that it would be secreted by multiciliated ependymal cells lying close to the SCO. Further, a surprising variety and complexity of glycan structures were identified in the RF N-glycome that further expands the potential functions of RF to a level not previously envisaged. A model of the macromolecular organization of Reissner fiber is proposed.


Sujet(s)
Glycoprotéines/métabolisme , Organe subcommissural/physiologie , Animaux , Bovins , Cystéine/métabolisme , Cytoplasme/métabolisme , Épendyme/cytologie , Épendyme/métabolisme , Galactose/métabolisme , Galectine 1/métabolisme , Glycoprotéines/ultrastructure , Glycosylation , Mâle , Polyosides/composition chimique , Polyosides/métabolisme , Rat Sprague-Dawley , Voie de sécrétion , Coloration et marquage , Organe subcommissural/ultrastructure , Radio-isotopes du soufre/métabolisme , Tritium/métabolisme
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