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1.
J Oral Pathol Med ; 53(9): 567-576, 2024 Oct.
Article de Anglais | MEDLINE | ID: mdl-39160673

RÉSUMÉ

OBJECTIVE: Tumor hypoxia is associated with a poorer prognosis in cancer patients and can diminish the efficacy of radiation therapy (RT). This study investigates the potential of metformin to enhance radiosensitivity in hypoxic cancer cells. METHODS: Preliminary experiments were conducted to validate the impact of hypoxia on radiation response. Reactive oxygen species (ROS) levels, cell migration, and cell death were assessed in hypoxic, radiated cells treated with metformin. Proteomic and ontological analyses were employed to identify molecular targets associated with the radiosensitizing effect of metformin. Proteomic and ontological findings were validated through patient samples and in vitro studies. RESULTS: Metformin amplified cell death, induced DNA fragmentation, decreased cell migration, and elevated ROS levels in hypoxic, radiated cells. Proteomic analyses revealed that GAPDH and TAGLN2 were identified as pivotal targets linked to the radiosensitizing effect of metformin. Oral cancer patients exhibited elevated levels of TAGLN2 and reduced levels of GAPDH. Metformin downregulated TAGLN2 and upregulated GAPDH in hypoxic, radiated cells. Additionally, metformin reduced levels of mutated p53. CONCLUSIONS: This study suggests that metformin can enhance radiosensitivity in hypoxic cells, operating through modulation of GAPDH and TAGLN2. Furthermore, metformin effectively reduces mutated p53 levels in radiated cells under hypoxic conditions.


Sujet(s)
Carcinome épidermoïde , Metformine , Tumeurs de la bouche , Radiosensibilisants , Humains , Metformine/pharmacologie , Metformine/usage thérapeutique , Tumeurs de la bouche/radiothérapie , Radiosensibilisants/pharmacologie , Lignée cellulaire tumorale , Mouvement cellulaire/effets des médicaments et des substances chimiques , Radiotolérance/effets des médicaments et des substances chimiques , Espèces réactives de l'oxygène/métabolisme , Protéomique , Glyceraldehyde 3-phosphate dehydrogenases , Glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) , Hypoxie cellulaire/effets des médicaments et des substances chimiques , Hypoxie tumorale/effets des médicaments et des substances chimiques
2.
J Immunol ; 208(3): 571-581, 2022 02 01.
Article de Anglais | MEDLINE | ID: mdl-34965962

RÉSUMÉ

IDO2 is one of two closely related tryptophan catabolizing enzymes induced under inflammatory conditions. In contrast to the immunoregulatory role defined for IDO1 in cancer models, IDO2 has a proinflammatory function in models of autoimmunity and contact hypersensitivity. In humans, two common single-nucleotide polymorphisms have been identified that severely impair IDO2 enzymatic function, such that <25% of individuals express IDO2 with full catalytic potential. This, together with IDO2's relatively weak enzymatic activity, suggests that IDO2 may have a role outside of its function in tryptophan catabolism. To determine whether the enzymatic activity of IDO2 is required for its proinflammatory function, we used newly generated catalytically inactive IDO2 knock-in mice together with established models of contact hypersensitivity and autoimmune arthritis. Contact hypersensitivity was attenuated in catalytically inactive IDO2 knock-in mice. In contrast, induction of autoimmune arthritis was unaffected by the absence of IDO2 enzymatic activity. In pursuing this nonenzymatic IDO2 function, we identified GAPDH, Runx1, RANbp10, and Mgea5 as IDO2-binding proteins that do not interact with IDO1, implicating them as potential mediators of IDO2-specific function. Taken together, our findings identify a novel function for IDO2, independent of its tryptophan catabolizing activity, and suggest that this nonenzymatic function could involve multiple signaling pathways. These data show that the enzymatic activity of IDO2 is required only for some inflammatory immune responses and provide, to our knowledge, the first evidence of a nonenzymatic role for IDO2 in mediating autoimmune disease.


Sujet(s)
Arthrite/immunologie , Auto-immunité/immunologie , Indoleamine-pyrrole 2,3,-dioxygenase/génétique , Indoleamine-pyrrole 2,3,-dioxygenase/métabolisme , Animaux , Antigènes néoplasiques/métabolisme , Lignée cellulaire , Sous-unité alpha 2 du facteur CBF/métabolisme , Techniques de knock-in de gènes , Glyceraldehyde 3-phosphate dehydrogenase (phosphorylating)/métabolisme , Facteurs d'échange de nucléotides guanyliques/métabolisme , Cellules HEK293 , Humains , Inflammation/immunologie , Souris , Souris de lignée BALB C , Souris de lignée C57BL , Souris knockout , Protéines associées aux microtubules/métabolisme , Polymorphisme de nucléotide simple/génétique
3.
Gac Med Mex ; 157(1): 29-34, 2021.
Article de Anglais | MEDLINE | ID: mdl-34125810

RÉSUMÉ

INTRODUCTION: Analysis of several parameters is required for adequate quality control in umbilical cord blood units (UCBU) when used for therapeutic purposes. OBJECTIVE: To optimize colony-forming units (CFU) from clonogenic cultures and to detect the human papillomavirus (HPV) genome in UCBU. METHODS: One hundred and forty-one umbilical cord blood (UCB), segment or CFU samples from UCBU clonogenic cultures were included. DNA extraction, quantification and endogenous GAPDH gene PCR amplification were carried out. Subsequently, HPV L1 gene was detected using the MY09/MY11 and GP5/GP6+ oligonucleotides. PCR products were analyzed with electrophoresis in agarose gel. CFU-extracted purified DNA was analyzed by electrophoresis in agarose gel, as well as some DNAs, using the sequence-specific priming technique. RESULTS: CFU-extracted DNA concentration was higher in comparison with that of UCB (p = 0.0041) and that of the segment (p < 0.0001), as well as that of UCB in comparison with that of the segment (p < 0.0001). All samples were positive for GAPDH amplification and negative for MY09/MY/11 and GP5/GP6+. CONCLUSIONS: Cryopreserved UCBUs were HPV-negative. Obtaining CFU DNA from clonogenic cultures with high concentrations and purity is feasible.


INTRODUCCIÓN: Se requiere analizar diversos parámetros para el control de calidad adecuado de las unidades de sangre de cordón umbilical (USCU) cuando se utilizan con fines terapéuticos. OBJETIVO: Optimizar las unidades formadoras de colonias (UFC) de cultivos clonogénicos y detectar el genoma del virus del papiloma humano (VPH) en USCU. MÉTODOS: Se incluyeron 141 muestras de sangre de cordón umbilical (SCU), de segmento y de UFC de cultivos clonogénicos de USCU. Se realizó extracción de ADN, cuantificación y amplificación por PCR del gen endógeno GAPDH. Se detectó el gen L1 del VPH con los oligonucleótidos MY09/MY11 y GP5/GP6+; los productos de PCR se migraron en electroforesis de agarosa. El ADN purificado de las UFC se analizó mediante electroforesis de agarosa y algunos ADN, con la técnica sequence specific priming. RESULTADOS: La concentración de ADN extraído de UFC fue superior comparada con la de SCU (p = 0.0041) y la de segmento (p < 0.0001); así como la de SCU comparada con la de segmento (p < 0.0001). Todas las muestras fueron positivas para la amplificación de GAPDH y negativas para MY09/MY11 y GP5/GP6+. CONCLUSIONES: Las USCU criopreservadas fueron VPH netativas; además, es factible obtener ADN en altas concentraciones y con alta pureza a partir de UFC de los cultivos clonogénicos.


Sujet(s)
ADN viral/isolement et purification , Sang foetal/virologie , Génome viral , Cellules souches hématopoïétiques/virologie , Papillomaviridae/isolement et purification , Adulte , Lignée cellulaire , Cryoconservation , Électrophorèse sur gel d'agar , Femelle , Sang foetal/cytologie , Glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) , Cellules HeLa , Test d'histocompatibilité , Humains , Papillomaviridae/génétique , Réaction de polymérisation en chaîne/méthodes , Jeune adulte
4.
Gac. méd. Méx ; Gac. méd. Méx;157(1): 30-36, ene.-feb. 2021. tab, graf
Article de Espagnol | LILACS | ID: biblio-1279070

RÉSUMÉ

Resumen Introducción: Se requiere analizar diversos parámetros para el control de calidad adecuado de las unidades de sangre de cordón umbilical (USCU) cuando se utilizan con fines terapéuticos. Objetivo: Optimizar las unidades formadoras de colonias (UFC) de cultivos clonogénicos y detectar el genoma del virus del papiloma humano (VPH) en USCU. Métodos: Se incluyeron 141 muestras de sangre de cordón umbilical (SCU), de segmento y de UFC de cultivos clonogénicos de USCU. Se realizó extracción de ADN, cuantificación y amplificación por PCR del gen endógeno GAPDH. Se detectó el gen L1 del VPH con los oligonucleótidos MY09/MY11 y GP5/GP6+; los productos de PCR se migraron en electroforesis de agarosa. El ADN purificado de las UFC se analizó mediante electroforesis de agarosa y algunos ADN, con la técnica sequence specific priming. Resultados: La concentración de ADN extraído de UFC fue superior comparada con la de SCU (p = 0.0041) y la de segmento (p < 0.0001); así como la de SCU comparada con la de segmento (p < 0.0001). Todas las muestras fueron positivas para la amplificación de GAPDH y negativas para MY09/MY11 y GP5/GP6+. Conclusiones: Las USCU criopreservadas fueron VPH netativas; además, es factible obtener ADN en altas concentraciones y con alta pureza a partir de UFC de los cultivos clonogénicos.


Abstract Introduction: Analysis of several markers is required for adequate quality control in umbilical cord blood units (UCBU) when are used for therapeutic purposes. Objective: To optimize colony-forming units (CFU) from clonogenic cultures and to detect the human papillomavirus (HPV) genome in UCBU. Methods: One hundred and forty-one umbilical cord blood (UCB), segment or CFU samples from UCBU clonogenic cultures were included. DNA extraction, quantification and endogenous GAPDH gene PCR amplification were carried out. Subsequently, HPV L1 gene was detected using the MY09/MY11 and GP5/GP6+ oligonucleotides. PCR products were analyzed with electrophoresis in agarose gel. CFU-extracted purified DNA was analyzed by electrophoresis in agarose gel, as well as some DNAs, using the SSP technique. Results: CFU-extracted DNA concentration was higher in comparison with that of UCB (p = 0.0041) and that of the segment (p < 0.0001), as well as that of UCB in comparison with that of the segment (p < 0.0001). All samples were positive for GAPDH amplification and negative for MY09/MY11 and GP5/GP6+. Conclusions: Cryopreserved UCBUs were HPV-negative. Obtaining CFU DNA from clonogenic cultures with high concentrations and purity is feasible.


Sujet(s)
Humains , Femelle , Adulte , Jeune adulte , Papillomaviridae/isolement et purification , ADN viral/isolement et purification , Cellules souches hématopoïétiques/virologie , Génome viral , Sang foetal/virologie , Papillomaviridae/génétique , Test d'histocompatibilité , Cellules HeLa , Cryoconservation , Lignée cellulaire , Réaction de polymérisation en chaîne/méthodes , Glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) , Électrophorèse sur gel d'agar , Sang foetal/cytologie
5.
Microb Pathog ; 139: 103885, 2020 Feb.
Article de Anglais | MEDLINE | ID: mdl-31790793

RÉSUMÉ

The ability of Rhodococcus equi to survive in macrophages and cause pneumonia in foals depends on vapA and rhbC genes, which produce the virulence-associated protein A (VapA) and the rhequichelin siderophore, respectively. Virulent R. equi acquires Fe from transferrin by unknown mechanisms. Our objectives were to determine the role of GAPDH in Fe homeostasis, to further characterize GAPDH, rhbC, and vapA expression under iron homeostasis, and to document the occurrence of rhbC gene in R. equi isolates. Therefore, vapA + R. equi was cultured under excessive, physiologic, and restricted iron concentrations, and quantitative culture and gene expression were performed. The relative expression of GAPDH, rhbC, and vapA after 48 h of culture were analyzed by qPCR. To determine the rhbC occurrence, total DNA was extracted from R. equi isolated from foals with clinical rhodococcosis (n = 22), healthy horses (feces, n = 16; nasal swab, n = 9), soil (n = 6), and 2 ATCC reference strains. Conventional PCR was performed to identify genus/species, vapA, and rhbC genes. Iron restriction proportionally decreased R. equi growth rates, and induced high expression of both GAPDH and vapA. The putative role of GAPDH in R. equi iron homeostasis should be further investigated. rhbC was significantly up-regulated under both Fe excess and critical starvation. The rhbC gene was identified in all clinical isolates and soil, but it was absent in 2 isolates from healthy horses, suggesting that rhequichelin is not required for R. equi nasal and intestinal colonization.


Sujet(s)
Infections à Actinomycetales/microbiologie , Protéines bactériennes/génétique , Régulation de l'expression des gènes bactériens , Glyceraldehyde 3-phosphate dehydrogenase (phosphorylating)/génétique , Fer/métabolisme , Rhodococcus equi/génétique , Rhodococcus equi/métabolisme , Homéostasie , Rhodococcus equi/croissance et développement , Virulence/génétique , Facteurs de virulence/génétique
6.
Article de Anglais | MEDLINE | ID: mdl-30961824

RÉSUMÉ

Mycoplasma suis, the etiological agent of swine hemoplasmosis, is an epicellular bacterium that adheres to the surface of pig erythrocytes leading to deformations of the target cells. Little is known about the occurrence of M. suis in wild swine populations around the world, its economic impact on swine herds, and the risk of human infection. The aim of this study was to investigate, by quantitative real-time PCR (qPCR) based on the 16S rRNA gene, the occurrence of M. suis in a captive population of white-lipped peccaries (100 Tayassu pecari) and in free-living wild boars (14 Sus scrofa) in Brazil. None of the white-lipped peccaries were positive for M. suis, whereas seven (50%) wild boars were positive in qPCR assays. The quantification of M. suis-16S rRNA copies/µL ranged from 1.42 × 10° to 3.906 × 101 in positive animals, indicating a low bacteremia and a chronic carrier status in free-living wild boars. In conclusion, M. suis might be a non-frequent pathogen in wild suids maintained in captivity. Despite the low bacteremia, the prevalence of M. suis in wild boar population in Brazil seems to be high.


Sujet(s)
Infections à Mycoplasma/épidémiologie , Infections à Mycoplasma/médecine vétérinaire , Mycoplasma/génétique , Mycoplasma/isolement et purification , Animaux , Bactériémie/épidémiologie , Bactériémie/microbiologie , Bactériémie/médecine vétérinaire , Brésil/épidémiologie , ADN bactérien/génétique , Glyceraldehyde 3-phosphate dehydrogenase (phosphorylating)/génétique , Typage moléculaire , ARN ribosomique 16S/génétique , Réaction de polymérisation en chaine en temps réel , Sus scrofa , Suidae
7.
Sci Rep ; 9(1): 2651, 2019 02 25.
Article de Anglais | MEDLINE | ID: mdl-30804377

RÉSUMÉ

Dengue is an important mosquito-borne disease and a global public health problem. The disease is caused by dengue virus (DENV), which is a member of the Flaviviridae family and contains a positive single-stranded RNA genome that encodes a single precursor polyprotein that is further cleaved into structural and non-structural proteins. Among these proteins, the non-structural 3 (NS3) protein is very important because it forms a non-covalent complex with the NS2B cofactor, thereby forming the functional viral protease. NS3 also contains a C-terminal ATPase/helicase domain that is essential for RNA replication. Here, we identified 47 NS3-interacting partners using the yeast two-hybrid system. Among those partners, we highlight several proteins involved in host energy metabolism, such as apolipoprotein H, aldolase B, cytochrome C oxidase and glyceraldehyde-3-phosphate dehydrogenase (GAPDH). GAPDH directly binds full-length NS3 and its isolated helicase and protease domains. Moreover, we observed an intense colocalization between the GAPDH and NS3 proteins in DENV2-infected Huh7.5.1 cells, in NS3-transfected BHK-21 cells and in hepatic tissue from a fatal dengue case. Taken together, these results suggest that the human GAPDH-DENV NS3 interaction is involved in hepatic metabolic alterations, which may contribute to the appearance of steatosis in dengue-infected patients. The interaction between GAPDH and full-length NS3 or its helicase domain in vitro as well as in NS3-transfected cells resulted in decreased GAPDH glycolytic activity. Reduced GAPDH glycolytic activity may lead to the accumulation of metabolic intermediates, shifting metabolism to alternative, non-glycolytic pathways. This report is the first to identify the interaction of the DENV2 NS3 protein with the GAPDH protein and to demonstrate that this interaction may play an important role in the molecular mechanism that triggers hepatic alterations.


Sujet(s)
Virus de la dengue/physiologie , Dengue/métabolisme , Dengue/virologie , Glyceraldehyde 3-phosphate dehydrogenase (phosphorylating)/métabolisme , Interactions hôte-pathogène , Protéines virales non structurales/métabolisme , Animaux , Marqueurs biologiques , Lignée cellulaire , Technique d'immunofluorescence , Glycolyse , Humains , Immunohistochimie , Cinétique , Foie/métabolisme , Foie/virologie , Liaison aux protéines , RNA helicases/métabolisme , Serine endopeptidases/métabolisme
8.
J Biotechnol ; 283: 11-21, 2018 Oct 10.
Article de Anglais | MEDLINE | ID: mdl-30003973

RÉSUMÉ

The seven in absentia like 7 gene (At5g37890, SINAL7) from Arabidopsis thaliana encodes a RING finger protein belonging to the SINA superfamily that possesses E3 ubiquitin-ligase activity. SINAL7 has the ability to self-ubiquitinate and to mono-ubiquitinate glyceraldehyde-3-P dehydrogenase 1 (GAPC1), suggesting a role for both proteins in a hypothetical signaling pathway in Arabidopsis. In this study, the in vivo effects of SINAL7 on plant physiology were examined by over-expressing SINAL7 in transgenic Arabidopsis plants. Phenotypic and gene expression analyses suggest the involvement of SINAL7 in the regulation of several vegetative parameters, essentially those that affect the aerial parts of the plants. Over-expression of SINAL7 resulted in an increase in the concentrations of hexoses and sucrose, with a concommitant increase in plant biomass, particularly in the number of rosette leaves and stem thickness. Interestingly, using the CAB1 (chlorophyll ab binding protein 1) gene as a marker revealed a delay in the onset of senescence. Transgenic plants also displayed a remarkable level of drought resistance, indicating the complexity of the response to SINAL7 over-expression.


Sujet(s)
Protéines d'Arabidopsis/génétique , Protéines d'Arabidopsis/métabolisme , Arabidopsis/physiologie , Expression des gènes , Stress physiologique , Ubiquitin-protein ligases/génétique , Ubiquitin-protein ligases/métabolisme , Biomasse , Sécheresses , Glyceraldehyde 3-phosphate dehydrogenase (phosphorylating)/métabolisme , Hexose/métabolisme , Parties aériennes de plante/physiologie , Végétaux génétiquement modifiés/physiologie , Transduction du signal , Saccharose/métabolisme , Ubiquitination
9.
Biochim Biophys Acta Proteins Proteom ; 1865(11 Pt A): 1304-1314, 2017 Nov.
Article de Anglais | MEDLINE | ID: mdl-28844734

RÉSUMÉ

Paracoccidioidomycosis is an important systemic mycosis caused by thermodimorphic fungi of the Paracoccidioides genus. During the infective process, the cell wall acts at the interface between the fungus and the host. In this way, the cell wall has a key role in growth, environment sensing and interaction, as well as morphogenesis of the fungus. Since the cell wall is absent in mammals, it may present molecules that are described as target sites for new antifungal drugs. Despite its importance, up to now few studies have been conducted employing proteomics in for the identification of cell wall proteins in Paracoccidioides spp. Here, a detailed proteomic approach, including cell wall-fractionation coupled to NanoUPLC-MSE, was used to study and compare the cell wall fractions from Paracoccidioides lutzii mycelia and yeast cells. The analyzed samples consisted of cell wall proteins extracted by hot SDS followed by extraction by mild alkali. In summary, 512 proteins constituting different cell wall fractions were identified, including 7 predicted GPI-dependent cell wall proteins that are potentially involved in cell wall metabolism. Adhesins previously described in Paracoccidioides spp. such as enolase, glyceraldehyde-3-phosphate dehydrogenase were identified. Comparing the proteins in mycelium and yeast cells, we detected some that are common to both fungal phases, such as Ecm33, and some specific proteins, as glucanase Crf1. All of those proteins were described in the metabolism of cell wall. Our study provides an important elucidation of cell wall composition of fractions in Paracoccidioides, opening a way to understand the fungus cell wall architecture.


Sujet(s)
Paroi cellulaire/métabolisme , Protéines fongiques/génétique , Régulation de l'expression des gènes fongiques , Mycelium/génétique , Paracoccidioides/génétique , Hydrogénocarbonates/composition chimique , Paroi cellulaire/composition chimique , Chromatographie en phase liquide , Protéines fongiques/isolement et purification , Protéines fongiques/métabolisme , Gene Ontology , Glyceraldehyde 3-phosphate dehydrogenase (phosphorylating)/génétique , Glyceraldehyde 3-phosphate dehydrogenase (phosphorylating)/isolement et purification , Glyceraldehyde 3-phosphate dehydrogenase (phosphorylating)/métabolisme , Extraction liquide-liquide/méthodes , Voies et réseaux métaboliques/génétique , Annotation de séquence moléculaire , Mycelium/croissance et développement , Mycelium/métabolisme , Paracoccidioides/croissance et développement , Paracoccidioides/métabolisme , Enolase/génétique , Enolase/isolement et purification , Enolase/métabolisme , Protéomique/méthodes , Dodécyl-sulfate de sodium/composition chimique , Spectrométrie de masse en tandem
10.
Parasit Vectors ; 10(1): 337, 2017 Jul 17.
Article de Anglais | MEDLINE | ID: mdl-28716154

RÉSUMÉ

BACKGROUND: Trypanosoma (Duttonella) vivax is a major pathogen of livestock in Africa and South America (SA), and genetic studies limited to small sampling suggest greater diversity in East Africa (EA) compared to both West Africa (WA) and SA. METHODS: Multidimensional scaling and phylogenetic analyses of 112 sequences of the glycosomal glyceraldehyde phosphate dehydrogenase (gGAPDH) gene and 263 sequences of the internal transcribed spacer of rDNA (ITS rDNA) were performed to compare trypanosomes from tsetse flies from Gorongosa National Park and Niassa National Reserve of Mozambique (MZ), wild ungulates and livestock from EA, and livestock isolates from WA and SA. RESULTS: Multidimensional scaling (MDS) supported Tvv (T. vivax) and TvL (T. vivax-like) evolutionary lineages: 1) Tvv comprises two main groups, TvvA/B (all SA and WA isolates plus some isolates from EA) and TvvC/D (exclusively from EA). The network revealed five ITS-genotypes within Tvv: Tvv1 (WA/EA isolates), Tvv2 (SA) and Tvv3-5 (EA). EA genotypes of Tvv ranged from highly related to largely different from WA/SA genotypes. 2) TvL comprises two gGAPDH-groups formed exclusively by EA sequences, TvLA (Tanzania/Kenya) and TvLB-D (MZ). This lineage contains more than 11 ITS-genotypes, seven forming the lineage TvL-Gorongosa that diverged from T. vivax Y486 enough to be identified as another species of the subgenus Duttonella. While gGAPDH sequences were fundamental for classification at the subgenus, major evolutionary lineages and species levels, ITS rDNA sequences permitted identification of known and novel genotypes. CONCLUSIONS: Our results corroborate a remarkable diversity of Duttonella trypanosomes in EA, especially in wildlife conservation areas, compared to the moderate diversity in WA. Surveys in wilderness areas in WA may reveal greater diversity. Biogeographical and phylogenetic data point to EA as the place of origin, diversification and spread of Duttonella trypanosomes across Africa, providing relevant insights towards the understanding of T. vivax evolutionary history.


Sujet(s)
Animaux sauvages/parasitologie , Artiodactyla/parasitologie , Variation génétique , Bétail/parasitologie , Perissodactyla/parasitologie , Trypanosoma vivax/classification , Mouches tsé-tsé/parasitologie , Animaux , Analyse de regroupements , ADN des protozoaires/composition chimique , ADN des protozoaires/génétique , Espaceur de l'ADN ribosomique/composition chimique , Espaceur de l'ADN ribosomique/génétique , Glyceraldehyde 3-phosphate dehydrogenase (phosphorylating)/génétique , Mozambique , Parcs de loisirs , Phylogenèse , Analyse de séquence d'ADN , Trypanosoma vivax/génétique , Trypanosoma vivax/isolement et purification
11.
Genet Mol Res ; 16(2)2017 Jun 29.
Article de Anglais | MEDLINE | ID: mdl-28671253

RÉSUMÉ

Chili pepper (Capsicum chinense) is a great economic important culture on the State of Amazonas, and it represents, approximately, a production of 1.9 thousand tons per year. It is one of the hosts of Colletotrichum genus in the North region of Brazil. The aim of the study was to differentiate and to identify isolates of Colletotrichum collected from C. chinense in Amazon. Molecular characterization, using RFLP-PCR, ERIC-PCR and ISSR, was carried out initially for screening of morphologically similar isolates. Furthermore, phylogenetic analyses were performed using combined regions: Actin (ACT), glyceraldehyde-3-phosphate dehydrogenase (GAPDH) for the three isolates, INPA 2066, INPA 2286 and INPA 1858, plus superoxide dismutase (SOD2) for INPA 2066. We showed that the molecular markers were able to distinguish the isolates of Colletotrichum studied and these results were confirmed with the phylogenetic analyses, three different occurrences of Colletotrichum species (C. siamense, C. scovillei and C. brevisporum) causing anthracnose in C. chinense in the State of Amazonas. This study represents the first report of the species C. siamense and C. scovillei in this host in Brazil.


Sujet(s)
Capsicum/microbiologie , Colletotrichum/génétique , Phylogenèse , Polymorphisme génétique , Actines/génétique , Colletotrichum/classification , Colletotrichum/isolement et purification , Colletotrichum/pathogénicité , Protéines fongiques/génétique , Glyceraldehyde 3-phosphate dehydrogenase (phosphorylating)/génétique , Répétitions microsatellites , Superoxide dismutase/génétique
12.
Genet Mol Res ; 16(2)2017 Jun 29.
Article de Anglais | MEDLINE | ID: mdl-28671258

RÉSUMÉ

Rice is a cereal that presents a great ability to adapt to different soil and climate conditions. However, as it is a tropical crop with C3 metabolism, it performs better in warm temperatures with high solar radiation. Tolerance to stress caused by low temperatures is a highly complex process that involves various metabolic pathways and cellular compartments, resulting in general or specific effects on plant growth and development. In order to observe the true effect of a particular stress on genetic expression, reference genes need to be chosen for real-time PCRs, the expression levels of which should remain stable independent of the situation imposed. In this paper, the expression stability was evaluated of the actin 11 (ACT11), ubiquitin-conjugating enzyme 2 (UBC-E2), glyceraldehyde 3-phosphate dehydrogenase (GAPDH), beta tubilin (ß-Tubulin), eukaryotic initiation factor 4α (eIF-4-α), eukaryotic initiation factor 1α (eIF-1-α), ubiquitin 10 (UBQ10), ubiquitin 5 (UBQ5), aquaporin (TIP41), and cyclophilin genes, in two rice genotypes cultivated in low temperature (13°C) conditions in vegetative stage (V4). The analysis material (leaves) was collected after 0, 6, 24, 48, and 72 h of exposure to the stress. In this study, the geNorm, BestKeeper, ΔCt, NormFinder, and RefFinder methods were used to evaluate the expression stability of the candidate reference genes. The results revealed that the most indicated genes for all the analysis methods were UBQ10 and UBQ5 for BRS Bojuru and BRS Pampa, respectively. On the other hand, the eIF-1-α gene presents the least expression stability and is not indicated for studies of rice plants subjected to low temperatures. The validation with the antioxidant system genes SODCc1-Cu/Zn, CATC, APX2, and GR2 confirmed the importance of using previously tested normalizing genes for adequate real-time PCR results.


Sujet(s)
Réponse au choc froid/génétique , Gènes de plante , Oryza/génétique , Réaction de polymérisation en chaine en temps réel/normes , Actines/génétique , Aquaporines/génétique , Cyclophilines/génétique , Facteur-4A d'initiation eucaryote/génétique , Glyceraldehyde 3-phosphate dehydrogenase (phosphorylating)/génétique , Protéines végétales/génétique , Réaction de polymérisation en chaine en temps réel/méthodes , Normes de référence , Tubuline/génétique , Ubiquitines/génétique
13.
Curr Microbiol ; 74(6): 747-756, 2017 Jun.
Article de Anglais | MEDLINE | ID: mdl-28378161

RÉSUMÉ

Colletotrichum is an important fungal genus with great diversity, which causes anthracnose of a variety of crop plants including rubber trees. Colletotrichum acutatum and Colletotrichum gloeosporioides have been identified as the major causative agents of Colletotrichum leaf disease of rubber trees in Sri Lanka based on morphology, pathogenicity, and the analysis of internally transcribed spacer sequences of the nuclear ribosomal DNA. This study has been conducted to investigate the members of the C. acutatum species complex causing rubber leaf disease using a morphological and multi gene approach. For the first time in Sri Lanka, Colletotrichum simmondsii, Colletotrichum laticiphilum, Colletotrichum nymphaeae, and Colletotrichum citri have been identified as causative agents of Colletotrichum leaf disease in addition to C. acutatum s. str. Among them, C. simmondsii has been recognized as the major causative agent.


Sujet(s)
Colletotrichum/classification , Colletotrichum/isolement et purification , Hevea/microbiologie , Maladies des plantes/microbiologie , Colletotrichum/génétique , ADN fongique/génétique , Espaceur de l'ADN ribosomique/génétique , Glyceraldehyde 3-phosphate dehydrogenase (phosphorylating)/génétique , Phylogenèse , Feuilles de plante/microbiologie , Sri Lanka , Tubuline/génétique
14.
FEBS Lett ; 590(14): 2210-20, 2016 07.
Article de Anglais | MEDLINE | ID: mdl-27282776

RÉSUMÉ

Glyceraldehyde-3-phosphate dehydrogenase's (GAPDH's) competitor of Siah Protein Enhances Life (GOSPEL) is the protein that competes with Siah1 for binding to GAPDH under NO-induced stress conditions preventing Siah1-bound GAPDH nuclear translocation and subsequent apoptosis. Under these conditions, GAPDH may also form amyloid-like aggregates proposed to be involved in cell death. Here, we report the in vitro enhancement by GOSPEL of NO-induced GAPDH aggregation resulting in the formation GOSPEL-GAPDH co-aggregates with some amyloid-like properties. Our findings suggest a new function for GOSPEL, contrasting with its helpful role against the apoptotic nuclear translocation of GAPDH. NAD(+) inhibited both GAPDH aggregation and co-aggregation with GOSPEL, a hitherto undescribed effect of the coenzyme against the consequences of oxidative stress.


Sujet(s)
Apoptose/physiologie , Noyau de la cellule/métabolisme , Glyceraldehyde 3-phosphate dehydrogenase (phosphorylating)/métabolisme , NAD/métabolisme , Monoxyde d'azote/métabolisme , Transport nucléaire actif , Lignée cellulaire , Noyau de la cellule/génétique , Glyceraldehyde 3-phosphate dehydrogenase (phosphorylating)/génétique , Humains , NAD/génétique , Monoxyde d'azote/génétique
15.
Infect Genet Evol ; 43: 165-72, 2016 09.
Article de Anglais | MEDLINE | ID: mdl-27180897

RÉSUMÉ

Trypanosome evolution was so far essentially studied on the basis of phylogenetic analyses of small subunit ribosomal RNA (SSU-rRNA) and glycosomal glyceraldehyde-3-phosphate dehydrogenase (gGAPDH) genes. We used for the first time the 70kDa heat-shock protein gene (hsp70) to investigate the phylogenetic relationships among 11 Trypanosoma species on the basis of 1380 nucleotides from 76 sequences corresponding to 65 strains. We also constructed a phylogeny based on combined datasets of SSU-rDNA, gGAPDH and hsp70 sequences. The obtained clusters can be correlated with the sections and subgenus classifications of mammal-infecting trypanosomes except for Trypanosoma theileri and Trypanosoma rangeli. Our analysis supports the classification of Trypanosoma species into clades rather than in sections and subgenera, some of which being polyphyletic. Nine clades were recognized: Trypanosoma carassi, Trypanosoma congolense, Trypanosoma cruzi, Trypanosoma grayi, Trypanosoma lewisi, T. rangeli, T. theileri, Trypanosoma vivax and Trypanozoon. These results are consistent with existing knowledge of the genus' phylogeny. Within the T. cruzi clade, three groups of T. cruzi discrete typing units could be clearly distinguished, corresponding to TcI, TcIII, and TcII+V+VI, while support for TcIV was lacking. Phylogenetic analyses based on hsp70 demonstrated that this molecular marker can be applied for discriminating most of the Trypanosoma species and clades.


Sujet(s)
Glyceraldehyde 3-phosphate dehydrogenase (phosphorylating)/génétique , Protéines du choc thermique HSP70/génétique , Phylogenèse , Protéines de protozoaire/génétique , ARN ribosomique 18S/génétique , Trypanosoma/génétique , Animaux , Évolution biologique , Expression des gènes , Répétitions microsatellites , Famille multigénique , Typage par séquençage multilocus , Polymorphisme de restriction , Analyse de séquence d'ADN , Trypanosoma/classification , Trypanosoma/isolement et purification
16.
J Biochem ; 159(2): 209-16, 2016 Feb.
Article de Anglais | MEDLINE | ID: mdl-26381537

RÉSUMÉ

Ethrel is the most effective stimuli in prolonging the latex flow that consequently increases yield per tapping. This effect is largely ascribed to the enhanced lutoid stability, which is associated with the decreased release of initiators of rubber particle (RP) aggregation from lutoid bursting. However, the increase in both the bursting index of lutoids and the duration of latex flow after applying ethrel or ethylene gas in high concentrations suggests that a new mechanism needs to be introduced. In this study, a latex allergen Hev b 7-like protein in C-serum was identified by matrix-assisted laser desorption/ionization time of flight mass spectrometry (MALDI TOF MS). In vitro analysis showed that the protein acted as a universal antagonist of RP aggregating factors from lutoids and C-serum. Ethrel treatment obviously weakened the effect of C-serum on RP aggregation, which was closely associated with the increase in the level of the Hev b 7-like protein and the decrease in the level of the 37 kDa protein, as revealed by sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE), western blotting analysis and antibody neutralization. Thus, the increase of the Hev b 7-like protein level or the ratio of the Hev b 7-like protein to the 37 kDa protein in C-serum should be primarily ascribed to the ethrel-stimulated prolongation of latex flow duration.


Sujet(s)
Antigènes végétaux/pharmacologie , Hevea/effets des médicaments et des substances chimiques , Hevea/physiologie , Latex/composition chimique , Composés organiques du phosphore/pharmacologie , Protéines végétales/pharmacologie , Peptides antimicrobiens cationiques/antagonistes et inhibiteurs , Glyceraldehyde 3-phosphate dehydrogenase (phosphorylating)/antagonistes et inhibiteurs , Lectines végétales/antagonistes et inhibiteurs
17.
Genet Mol Res ; 14(4): 16704-11, 2015 Dec 11.
Article de Anglais | MEDLINE | ID: mdl-26681017

RÉSUMÉ

It is known that several factors, including gender, may influence the expression of multidrug resistance associated proteins 2 (MRP2/ABCC2) in the peripheral blood mononuclear cells (PBMCs). This study aims to compare ABCC2 gene expression in PBMCs of healthy males and females. PBMCs were extracted from 48 females and 44 males, and gene expression was measured using real-time quantitative polymerase chain reaction (real-time QPCR). Multiple housekeeping genes (Actin-ß, ß2-M, GAPDH) were utilized as endogenous controls. The stability of housekeeping genes was verified using the Excel-based Bestkeeper® program. Our results showed that expression level of ABCC2 in PBMCs was 1.2-1.4 fold higher in males compared to that in females, depending on the endogenous control(s) used. However, this difference was not statistically significant. When considering using a single endogenous control gene, GAPDH and Actin-ßwere found to be more suitable than ß2-M. Moreover, GAPDH + Actin-ß, or the combination of all three housekeeping gene as endogenous control(s) showed greater stability than other endogenous control genes for normalization of ABCC2 expression in PBMCs. This study suggests that ABCC2 expression in PBMCs may be, in part, influenced by gender, and that at least two endogenous control genes should be utilized for gene expression normalization.


Sujet(s)
Monocytes/métabolisme , Protéines associées à la multirésistance aux médicaments/métabolisme , Actines/génétique , Actines/métabolisme , Adolescent , Adulte , Femelle , Gènes essentiels , Glyceraldehyde 3-phosphate dehydrogenase (phosphorylating)/génétique , Glyceraldehyde 3-phosphate dehydrogenase (phosphorylating)/métabolisme , Humains , Mâle , Protéine-2 associée à la multirésistance aux médicaments , Protéines associées à la multirésistance aux médicaments/génétique , Réaction de polymérisation en chaîne/normes , Facteurs sexuels
18.
Parasit Vectors ; 8: 657, 2015 Dec 23.
Article de Anglais | MEDLINE | ID: mdl-26701154

RÉSUMÉ

BACKGROUND: Bat trypanosomes are implicated in the evolution of the T. cruzi clade, which harbours most African, European and American trypanosomes from bats and other trypanosomes from African, Australian and American terrestrial mammals, including T. cruzi and T. rangeli, the agents of the American human trypanosomiasis. The diversity of bat trypanosomes globally is still poorly understood, and the common ancestor, geographical origin, and evolution of species within the T. cruzi clade remain largely unresolved. METHODS: Trypanosome sequences were obtained from cultured parasites and from museum archived liver/blood samples of bats captured from Guatemala (Central America) to the Brazilian Atlantic Coast. Phylogenies were inferred using Small Subunit (SSU) rRNA, glycosomal glyceraldehyde phosphate dehydrogenase (gGAPDH), and Spliced Leader (SL) RNA genes. RESULTS: Here, we described Trypanosoma wauwau n. sp. from Pteronotus bats (Mormoopidae) placed in the T. cruzi clade, then supporting the bat-seeding hypothesis whereby the common ancestor of this clade likely was a bat trypanosome. T. wauwau was sister to the clade T. spp-Neobats from phyllostomid bats forming an assemblage of trypanosome species exclusively of Noctilionoidea Neotropical bats, which was sister to an Australian clade of trypanosomes from indigenous marsupials and rodents, which possibly evolved from a bat trypanosome. T. wauwau was found in 26.5% of the Pteronotus bats examined, and phylogeographical analysis evidenced the wide geographical range of this species. To date, this species was not detected in other bats, including those that were sympatric or shared shelters with Pteronotus. T. wauwau did not develop within mammalian cells, and was not infective to Balb/c mice or to triatomine vectors of T. cruzi and T. rangeli. CONCLUSIONS: Trypanosoma wauwau n. sp. was linked to Pteronotus bats. The positioning of the clade T. wauwau/T.spp-Neobats as the most basal Neotropical bat trypanosomes and closely related to an Australian lineage of trypanosomes provides additional evidence that the T. cruzi clade trypanosomes likely evolved from bats, and were dispersed in bats within and between continents from ancient to unexpectedly recent times.


Sujet(s)
Évolution moléculaire , Variation génétique , Trypanosoma cruzi/classification , Trypanosoma cruzi/génétique , Animaux , Australie , Brésil , Amérique centrale , Chiroptera , Analyse de regroupements , ADN des protozoaires/composition chimique , ADN des protozoaires/génétique , ADN ribosomique/composition chimique , ADN ribosomique/génétique , Glyceraldehyde 3-phosphate dehydrogenase (phosphorylating)/génétique , Souris de lignée BALB C , Données de séquences moléculaires , Phylogenèse , ARN ribosomique 18S/génétique , ARN de tête épissé , Analyse de séquence d'ADN , Similitude de séquences , Trypanosoma cruzi/isolement et purification
19.
J Virol ; 89(23): 11871-83, 2015 Dec.
Article de Anglais | MEDLINE | ID: mdl-26378175

RÉSUMÉ

UNLABELLED: Dengue is one of the main public health concerns worldwide. Recent estimates indicate that over 390 million people are infected annually with the dengue virus (DENV), resulting in thousands of deaths. Among the DENV nonstructural proteins, the NS1 protein is the only one whose function during replication is still unknown. NS1 is a 46- to 55-kDa glycoprotein commonly found as both a membrane-associated homodimer and a soluble hexameric barrel-shaped lipoprotein. Despite its role in the pathogenic process, NS1 is essential for proper RNA accumulation and virus production. In the present study, we identified that glyceraldehyde-3-phosphate dehydrogenase (GAPDH) interacts with intracellular NS1. Molecular docking revealed that this interaction occurs through the hydrophobic protrusion of NS1 and the hydrophobic residues located at the opposite side of the catalytic site. Moreover, addition of purified recombinant NS1 enhanced the glycolytic activity of GAPDH in vitro. Interestingly, we observed that DENV infection promoted the relocalization of GAPDH to the perinuclear region, where NS1 is commonly found. Both DENV infection and expression of NS1 itself resulted in increased GAPDH activity. Our findings indicate that the NS1 protein acts to increase glycolytic flux and, consequently, energy production, which is consistent with the recent finding that DENV induces and requires glycolysis for proper replication. This is the first report to propose that NS1 is an important modulator of cellular energy metabolism. The data presented here provide new insights that may be useful for further drug design and the development of alternative antiviral therapies against DENV. IMPORTANCE: Dengue represents a serious public health problem worldwide and is caused by infection with dengue virus (DENV). Estimates indicate that half of the global population is at risk of infection, with almost 400 million cases occurring per year. The NS1 glycoprotein is found in both the intracellular and the extracellular milieus. Despite the fact that NS1 has been commonly associated with DENV pathogenesis, it plays a pivotal but unknown role in the replication process. In an effort to understand the role of intracellular NS1, we demonstrate that glyceraldehyde-3-phosphate dehydrogenase (GAPDH) interacts with NS1. Our results indicate that NS1 increases the glycolytic activity of GAPDH in vitro. Interestingly, the GAPDH activity was increased during DENV infection, and NS1 expression alone was sufficient to enhance intracellular GAPDH activity in BHK-21 cells. Overall, our findings suggest that NS1 is an important modulator of cellular energy metabolism by increasing glycolytic flux.


Sujet(s)
Métabolisme énergétique/physiologie , Glyceraldehyde 3-phosphate dehydrogenase (phosphorylating)/métabolisme , Modèles moléculaires , Protéines virales non structurales/composition chimique , Protéines virales non structurales/métabolisme , Analyse de variance , Animaux , Lignée cellulaire , Chromatographie en phase liquide , Cricetinae , Test ELISA , Cellules endothéliales de la veine ombilicale humaine , Humains , Immunoprécipitation , Microscopie de fluorescence , Liaison aux protéines , Spectrométrie de masse en tandem , Protéines virales non structurales/génétique
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