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1.
J Med Virol ; 96(7): e29775, 2024 Jul.
Article de Anglais | MEDLINE | ID: mdl-38949184

RÉSUMÉ

Dengue fever is a mosquito-borne viral disease caused by the dengue virus (DENV). It poses a public health threat globally and, while most people with dengue have mild symptoms or are asymptomatic, approximately 5% of affected individuals develop severe disease and need hospital care. However, knowledge of the molecular mechanisms underlying dengue infection and the interaction between the virus and its host remains limited. In the present study, we performed a quantitative proteomic and N-glycoproteomic analysis of serum from 19 patients with dengue and 11 healthy people. The results revealed distinct proteomic and N-glycoproteomic landscapes between the two groups. Notably, we report for the first time the changes in the serum N glycosylation pattern following dengue infection and provide abundant information on glycoproteins, glycosylation sites, and intact N-glycopeptides using recently developed site-specific glycoproteomic approaches. Furthermore, a series of key functional pathways in proteomic and N-glycoproteomic were identified. Collectively, our findings significantly improve understanding of host and DENV interactions and the general pathogenesis and pathology of DENV, laying a foundation for functional studies of glycosylation and glycan structures in dengue infection.


Sujet(s)
Virus de la dengue , Dengue , Glycoprotéines , Protéomique , Humains , Dengue/sang , Dengue/virologie , Protéomique/méthodes , Glycoprotéines/sang , Glycosylation , Mâle , Femelle , Adulte , Protéome/analyse , Adulte d'âge moyen
2.
FASEB J ; 38(13): e23797, 2024 Jul 15.
Article de Anglais | MEDLINE | ID: mdl-38963344

RÉSUMÉ

The role of N-glycosylation in the myogenic process remains poorly understood. Here, we evaluated the impact of N-glycosylation inhibition by Tunicamycin (TUN) or by phosphomannomutase 2 (PMM2) gene knockdown, which encodes an enzyme essential for catalyzing an early step of the N-glycosylation pathway, on C2C12 myoblast differentiation. The effect of chronic treatment with TUN on tibialis anterior (TA) and extensor digitorum longus (EDL) muscles of WT and MLC/mIgf-1 transgenic mice, which overexpress muscle Igf-1Ea mRNA isoform, was also investigated. TUN-treated and PMM2 knockdown C2C12 cells showed reduced ConA, PHA-L, and AAL lectin binding and increased ER-stress-related gene expression (Chop and Hspa5 mRNAs and s/uXbp1 ratio) compared to controls. Myogenic markers (MyoD, myogenin, and Mrf4 mRNAs and MF20 protein) and myotube formation were reduced in both TUN-treated and PMM2 knockdown C2C12 cells. Body and TA weight of WT and MLC/mIgf-1 mice were not modified by TUN treatment, while lectin binding slightly decreased in the TA muscle of WT (ConA and AAL) and MLC/mIgf-1 (ConA) mice. The ER-stress-related gene expression did not change in the TA muscle of WT and MLC/mIgf-1 mice after TUN treatment. TUN treatment decreased myogenin mRNA and increased atrogen-1 mRNA, particularly in the TA muscle of WT mice. Finally, the IGF-1 production and IGF1R signaling pathways activation were reduced due to N-glycosylation inhibition in TA and EDL muscles. Decreased IGF1R expression was found in TUN-treated C2C12 myoblasts which was associated with lower IGF-1-induced IGF1R, AKT, and ERK1/2 phosphorylation compared to CTR cells. Chronic TUN-challenge models can help to elucidate the molecular mechanisms through which diseases associated with aberrant N-glycosylation, such as Congenital Disorders of Glycosylation (CDG), affect muscle and other tissue functions.


Sujet(s)
Différenciation cellulaire , Chaperonne BiP du réticulum endoplasmique , Muscles squelettiques , Myoblastes , Récepteur IGF de type 1 , Transduction du signal , Tunicamycine , Animaux , Souris , Glycosylation , Myoblastes/métabolisme , Chaperonne BiP du réticulum endoplasmique/métabolisme , Tunicamycine/pharmacologie , Récepteur IGF de type 1/métabolisme , Récepteur IGF de type 1/génétique , Muscles squelettiques/métabolisme , Développement musculaire/physiologie , Lignée cellulaire , Souris transgéniques , Stress du réticulum endoplasmique , Facteur de croissance IGF-I/métabolisme , Facteur de croissance IGF-I/génétique
3.
Methods Mol Biol ; 2829: 185-194, 2024.
Article de Anglais | MEDLINE | ID: mdl-38951334

RÉSUMÉ

Insect cell expression has been successfully used for the production of viral antigens as part of commercial vaccine development. As expression host, insect cells offer advantage over bacterial system by presenting the ability of performing post-translational modifications (PTMs) such as glycosylation and phosphorylation thus preserving the native functionality of the proteins especially for viral antigens. Insect cells have limitation in exactly mimicking some proteins which require complex glycosylation pattern. The recent advancement in insect cell engineering strategies could overcome this limitation to some extent. Moreover, cost efficiency, timelines, safety, and process adoptability make insect cells a preferred platform for production of subunit antigens for human and animal vaccines. In this chapter, we describe the method for producing the SARS-CoV2 spike ectodomain subunit antigen for human vaccine development and the virus like particle (VLP), based on capsid protein of porcine circovirus virus 2 (PCV2d) antigen for animal vaccine development using two different insect cell lines, SF9 & Hi5, respectively. This methodology demonstrates the flexibility and broad applicability of insect cell as expression host.


Sujet(s)
Antigènes viraux , Baculoviridae , Glycoprotéine de spicule des coronavirus , Animaux , Baculoviridae/génétique , Antigènes viraux/génétique , Antigènes viraux/immunologie , Cellules Sf9 , Humains , Glycoprotéine de spicule des coronavirus/génétique , Glycoprotéine de spicule des coronavirus/immunologie , Glycoprotéine de spicule des coronavirus/métabolisme , Protéines recombinantes/génétique , Lignée cellulaire , SARS-CoV-2/génétique , SARS-CoV-2/immunologie , Vaccins à pseudo-particules virales/génétique , Vaccins à pseudo-particules virales/immunologie , Vaccins à pseudo-particules virales/biosynthèse , Protéines de capside/génétique , Protéines de capside/immunologie , Glycosylation , Insectes/génétique , Spodoptera , Vaccins contre la COVID-19/génétique , Vaccins contre la COVID-19/immunologie
4.
Methods Mol Biol ; 2829: 329-339, 2024.
Article de Anglais | MEDLINE | ID: mdl-38951347

RÉSUMÉ

Mammalian cell lines are one of the best options when it comes to the production of complex proteins requiring specific glycosylation patterns. Plasmid DNA transfection and stable cell lines are frequently used for recombinant protein production, but they are expensive at large scale or can become time-consuming, respectively. The BacMam baculovirus (BV) is a safe and cost-effective platform to produce recombinant proteins in mammalian cells. The process of generating BacMam BVs is straightforward and similar to the generation of "insect" BVs, with different commercially available platforms. Although there are several protocols that describe recombinant protein expression with the BacMam BV in adherent cell lines, limited information is available on suspension cells. Therefore, it is of relevance to define the conditions to produce recombinant proteins in suspension cell cultures with BacMam BVs that facilitate bioprocess transfer to larger volumes. Here, we describe a method to generate a high titer BacMam BV stock and produce recombinant proteins in suspension HEK293 cells.


Sujet(s)
Baculoviridae , Protéines recombinantes , Baculoviridae/génétique , Humains , Protéines recombinantes/génétique , Protéines recombinantes/métabolisme , Protéines recombinantes/biosynthèse , Cellules HEK293 , Animaux , Transfection/méthodes , Vecteurs génétiques/génétique , Techniques de culture cellulaire/méthodes , Expression des gènes , Glycosylation
5.
PeerJ ; 12: e17611, 2024.
Article de Anglais | MEDLINE | ID: mdl-38948207

RÉSUMÉ

Objective: This study aimed to assess the accuracy of Mac-2 binding protein glycosylation isomer (M2BPGi) in predicting the stage of liver fibrosis. Methods: Articles published until October 10, 2023, were searched in the PubMed, Embase, Web of Science, and Cochrane Library databases. Pooled sensitivity, specificity, diagnostic odds ratio (DOR), summary receiver-operator curves (SROC), and Spearman's rank correlation coefficient were used to examine the accuracy of M2BPGi in predicting the stage of liver fibrosis. A 95% confidence interval (CI) was provided for each estimate. Results: Twenty-four studies were included in this meta-analysis, including 3,839 patients with liver fibrosis, 409 of whom progressed to stage 4 or above. The pooled sensitivity, specificity, and area under the ROC (AUC) for M2BPGi predicting liver fibrosis ≥F3 were 0.74 (95% CI [0.65-0.82]), 0.84 (95% CI [0.76-0.89]), and 14.99 (95% CI [9.28-24.21]), respectively. The pooled sensitivity, specificity, and AUC for ≥F4 were 0.80 (95% CI [0.70-0.88]), 0.80 (95% CI [0.73-0.86]), and 16.43 (95% CI [0.84-0.90]), respectively. Conclusion: Among different sample partitions, M2BPGi has the best diagnostic performance for liver fibrosis stage ≥4. Furthermore, the cutoff of 1-2 is more accurate than that of 0-1 or 2-3 for fibrosis ≥ F3 and ≥ F4. Registration: CRD42023483260.


Sujet(s)
Marqueurs biologiques , Cirrhose du foie , Humains , Cirrhose du foie/diagnostic , Cirrhose du foie/anatomopathologie , Cirrhose du foie/métabolisme , Marqueurs biologiques/métabolisme , Glycosylation , Antigènes néoplasiques/métabolisme , Antigènes néoplasiques/analyse , Courbe ROC , Sensibilité et spécificité , Glycoprotéines membranaires
6.
Cell Mol Life Sci ; 81(1): 290, 2024 Jul 06.
Article de Anglais | MEDLINE | ID: mdl-38970666

RÉSUMÉ

Pattern recognition receptors (PRRs) play a crucial role in innate immunity, and a complex network tightly controls their signaling cascades to maintain immune homeostasis. Within the modification network, posttranslational modifications (PTMs) are at the core of signaling cascades. Conventional PTMs, which include phosphorylation and ubiquitination, have been extensively studied. The regulatory role of unconventional PTMs, involving unanchored ubiquitination, ISGylation, SUMOylation, NEDDylation, methylation, acetylation, palmitoylation, glycosylation, and myristylation, in the modulation of innate immune signaling pathways has been increasingly investigated. This comprehensive review delves into the emerging field of unconventional PTMs and highlights their pivotal role in innate immunity.


Sujet(s)
Immunité innée , Maturation post-traductionnelle des protéines , Transduction du signal , Humains , Animaux , Transduction du signal/immunologie , Ubiquitination , Récepteurs de reconnaissance de motifs moléculaires/métabolisme , Récepteurs de reconnaissance de motifs moléculaires/immunologie , Acétylation , Méthylation , Phosphorylation , Sumoylation , Glycosylation
7.
Int J Mol Sci ; 25(13)2024 Jul 08.
Article de Anglais | MEDLINE | ID: mdl-39000590

RÉSUMÉ

Protein cysteine S-glycosylation is a relatively rare and less well characterized post-translational modification (PTM). Creating reliable model proteins that carry this modification is challenging. The lack of available models or natural S-glycosylated proteins significantly hampers the development of mass-spectrometry-based (MS-based) methodologies for detecting protein cysteine S-glycosylation in real-world proteomic studies. There is also limited MS-sequencing data describing it as easier to create synthetic S-glycopeptides. Here, we present the results of an in-depth manual analysis of automatically annotated CID/HCD spectra for model S-glucopeptides. The CID spectra show a long series of y/b-fragment ions with retained S-glucosylation, regardless of the dominant m/z signals corresponding to neutral loss of 1,2-anhydroglucose from the precursor ions. In addition, the spectra show signals manifesting glucosyl transfer from the cysteine position onto lysine, arginine (Lys, Arg) side chains, and a peptide N-terminus. Other spectral evidence indicates that the N-glucosylated initial products of transfer are converted into N-fructosylated (i.e., glycated) structures due to Amadori rearrangement. We discuss the peculiar transfer of the glucose oxocarbenium ion (Glc+) to positively charged guanidinium residue (ArgH+) and propose a mechanism for the gas-phase Amadori rearrangement involving a 1,2-hydride ion shift.


Sujet(s)
Cystéine , Glycosylation , Cystéine/composition chimique , Cystéine/métabolisme , Maturation post-traductionnelle des protéines , Glycopeptides/composition chimique , Glycopeptides/métabolisme , Peptides/composition chimique , Peptides/métabolisme , Gaz/métabolisme , Gaz/composition chimique , Glucose/métabolisme , Glucose/composition chimique , Protéomique/méthodes , Spectrométrie de masse en tandem/méthodes
8.
Int J Mol Sci ; 25(13)2024 Jul 02.
Article de Anglais | MEDLINE | ID: mdl-39000389

RÉSUMÉ

This study aimed to produce single-chain recombinant Anguillid eel follicle-stimulating hormone (rec-eel FSH) analogs with high activity in Cricetulus griseus ovary DG44 (CHO DG44) cells. We recently reported that an O-linked glycosylated carboxyl-terminal peptide (CTP) of the equine chorionic gonadotropin (eCG) ß-subunit contributes to high activity and time-dependent secretion in mammalian cells. We constructed a mutant (FSH-M), in which a linker including the eCG ß-subunit CTP region (amino acids 115-149) was inserted between the ß-subunit and α-subunit of wild-type single-chain eel FSH (FSH-wt). Plasmids containing eel FSH-wt and eel FSH-M were transfected into CHO DG44 cells, and single cells expressing each protein were isolated from 10 and 7 clones. Secretion increased gradually during the cultivation period and peaked at 4000-5000 ng/mL on day 9. The molecular weight of eel FSH-wt was 34-40 kDa, whereas that of eel FSH-M increased substantially, with two bands at 39-46 kDa. Treatment with PNGase F to remove the N glycosylation sites decreased the molecular weight remarkably to approximately 8 kDa. The EC50 value and maximal responsiveness of eel FSH-M were approximately 1.23- and 1.06-fold higher than those of eel FSH-wt, indicating that the mutant showed slightly higher biological activity. Phosphorylated extracellular-regulated kinase (pERK1/2) activation exhibited a sharp peak at 5 min, followed by a rapid decline. These findings indicate that the new rec-eel FSH molecule with the eCG ß-subunit CTP linker shows potent activity and could be produced in massive quantities using the stable CHO DG44 cell system.


Sujet(s)
Cricetulus , Hormone folliculostimulante , Protéines recombinantes , Animaux , Cellules CHO , Protéines recombinantes/génétique , Protéines recombinantes/métabolisme , Hormone folliculostimulante/pharmacologie , Hormone folliculostimulante/métabolisme , Glycosylation , Anguilliformes/génétique , Gonadotrophine chorionique/pharmacologie , Gonadotrophine chorionique/génétique
9.
Vitam Horm ; 125: 31-46, 2024.
Article de Anglais | MEDLINE | ID: mdl-38997168

RÉSUMÉ

Post-translational modification of proteins by Maillard reaction, known as glycation, is thought to be the root cause of different complications, particularly in diabetes mellitus and age-related disorders. Methylglyoxal (MG), a reactive α-oxoaldehyde, increases in diabetic condition and reacts with the proteins to form advanced glycation end products (AGEs) following a Maillard-like reaction. In a time-dependent reaction study of MG with the heme protein myoglobin (Mb), MG was found to induce significant structural alterations of the heme protein, such as heme loss, changes in tryptophan fluorescence, and decrease of α-helicity with increased ß-sheet content. These changes were found to occur gradually with increasing period of incubation. Incubation of Mb with MG induced the formation of several AGE adducts, including, carboxyethyllysine at Lys-16, carboxymethyllysine at Lys-87, carboxyethyllysine or pyrraline-carboxymethyllysine at Lys-133, carboxyethyllysine at Lys-42 and hydroimidazolone or argpyrimidine at Arg-31 and Arg-139. MG induced amyloid-like aggregation of Mb was detected at a longer period of incubation. MG-derived AGEs, therefore, appear to have an important role as the precursors of protein aggregation, which, in turn, may be associated with pathophysiological complications.


Sujet(s)
Produits terminaux de glycation avancée , Myoglobine , Agrégats de protéines , Méthylglyoxal , Animaux , Humains , Produits terminaux de glycation avancée/métabolisme , Glycosylation , Réaction de Maillard , Myoglobine/métabolisme , Myoglobine/composition chimique , Maturation post-traductionnelle des protéines , Méthylglyoxal/métabolisme
10.
Int J Mol Sci ; 25(13)2024 Jun 25.
Article de Anglais | MEDLINE | ID: mdl-39000037

RÉSUMÉ

A complication of reducing sugars is that they can undergo Maillard chemical reactions, forming advanced glycation end-products (AGEs) that can induce oxidative stress and inflammation via engagements with the main receptor for AGEs (RAGE) in various tissues. Certain sugars, such as glucose and fructose, are well known to cause AGE formation. Recently, allulose has emerged as a rare natural sugar that is an epimer of fructose and which is of low caloric content that is minimally metabolized, leading to it being introduced as a low-calorie sugar alternative. However, the relative ability of allulose to generate AGEs compared to glucose and fructose is not known. Here we assess the accumulation of AGEs in cell-free, in vitro, and in vivo conditions in response to allulose and compare it to glycation mediated by glucose or fructose. AGEs were quantified in cell-free samples, cell culture media and lysates, and rat serum with glycation-specific ELISAs. In cell-free conditions, we observed concentration and time-dependent increases in AGEs when bovine serum albumin (BSA) was incubated with glucose or fructose and significantly less glycation when incubated with allulose. AGEs were significantly elevated when pulmonary alveolar type II-like cells were co-incubated with glucose or fructose; however, significantly less AGEs were detected when cells were exposed to allulose. AGE quantification in serum obtained from rats fed a high-fat, low-carb (HFLC) Western diet for 2 weeks revealed significantly less glycation in animals co-administered allulose compared to those exposed to stevia. These results suggest allulose is associated with less AGE formation compared to fructose or glucose, and support its safety as a low-calorie sugar alternative.


Sujet(s)
Fructose , Produits terminaux de glycation avancée , Animaux , Produits terminaux de glycation avancée/métabolisme , Rats , Glycosylation , Fructose/métabolisme , Oses/métabolisme , Glucose/métabolisme , Mâle , Sérumalbumine bovine/métabolisme , Récepteur spécifique des produits finaux de glycosylation avancée/métabolisme , Rat Sprague-Dawley
11.
Int J Mol Sci ; 25(13)2024 Jun 26.
Article de Anglais | MEDLINE | ID: mdl-39000114

RÉSUMÉ

Early diagnosis and treatment of chronic kidney disease (CKD) is a worldwide challenge. Subjects with albumin-to-creatinine ratio (ACR) ≥ 30 mg/g and preserved renal function are considered to be at no cardiorenal risk in clinical practice, but prospective clinical studies evidence increased risk, even at the high-normal (HN) ACR range (10-30 mg/g), supporting the need to identify other molecular indicators for early assessment of patients at higher risk. Following our previous studies, here we aim to stratify the normoalbuminuria range according to cardiorenal risk and identify the glycoproteins and N-glycosylation sites associated with kidney damage in subclinical CKD. Glycoproteins were analyzed in urine from hypertensive patients within the HN ACR range compared to control group (C; ACR < 10 mg/g) by mass spectrometry. A different cohort was analyzed for confirmation (ELISA) and sex perspective was evaluated. Patients' follow-up for 8 years since basal urine collection revealed higher renal function decline and ACR progression for HN patients. Differential N-glycopeptides and their N -glycosylation sites were also identified, together with their pathogenicity. N-glycosylation may condition pathological protein deregulation, and a panel of 62 glycoproteins evidenced alteration in normoalbuminuric subjects within the HN range. Haptoglobin-related protein, haptoglobin, afamin, transferrin, and immunoglobulin heavy constant gamma 1 (IGHG1) and 2 (IGHG2) showed increased levels in HN patients, pointing to disturbed iron metabolism and tubular reabsorption and supporting the tubule as a target of interest in the early progression of CKD. When analyzed separately, haptoglobin, afamin, transferrin, and IGHG2 remained significant in HN, in both women and men. At the peptide level, 172 N-glycopeptides showed differential abundance in HN patients, and 26 showed high pathogenicity, 10 of them belonging to glycoproteins that do not show variation between HN and C groups. This study highlights the value of glycosylation in subjects not meeting KDIGO criteria for CKD. The identified N-glycopeptides and glycosylation sites showed novel targets, for both the early assessment of individual cardiorenal risk and for intervention aimed at anticipating CKD progression.


Sujet(s)
Glycopeptides , Insuffisance rénale chronique , Humains , Mâle , Femelle , Glycopeptides/urine , Insuffisance rénale chronique/urine , Adulte d'âge moyen , Glycosylation , Sujet âgé , Marqueurs biologiques/urine , Créatinine/urine , Glycoprotéines/urine , Évolution de la maladie , Albuminurie/urine , Facteurs de risque , Haptoglobines/métabolisme
12.
J Vis Exp ; (208)2024 Jun 28.
Article de Anglais | MEDLINE | ID: mdl-39007607

RÉSUMÉ

Protein glycosylation, a critical post-translational modification, influences the stability, efficacy, and immunogenicity of recombinant proteins, including biopharmaceuticals. Glycan structures exhibit significant heterogeneity, varying with production cell types, culture conditions, and purification methods. Consequently, monitoring and evaluating the glycan structures of recombinant proteins is vital, particularly in biopharmaceutical production. The lectin microarray, a technique complementary to mass spectrometry, boasts high sensitivity and ease of use. However, it typically requires more than a day to yield results. To adapt it to non-glycoscience research or drug product process development, an automated, high-throughput alternative is needed. Therefore, the world's first fully automated lectin-based glycan profiling system was developed, utilizing the "bead array in a single tip (BIST)" technology concept. This system allows for the preparation and storage of lectin-immobilized beads in units of 1,000, with customizable parallel insertion orders for various purposes. This article presents a practical protocol for research involving "glyco-qualified" recombinant proteins. After testing their reactivity against 12 polyacrylamide-glycan conjugates, 15 lectins were selected to increase the system's versatility. In addition, the sample labeling process was optimized by switching from Cy3 to biotin, reducing the overall processing time by 30 min. For immediate data qualification, lectin-binding signals are displayed as a dotcode on the top monitor. The system's reliability was confirmed through day-to-day reproducibility tests, repeatability tests, and long-term storage tests, with a coefficient of variation of <10%. This user-friendly and rapid glyco-analyzer has potential applications in the quality monitoring of endogenous glycoproteins for biomarker evaluation and validation. This method facilitates analysis for those new to glycoscience, thereby broadening its practical utility.


Sujet(s)
Lectines , Polyosides , Protéines recombinantes , Protéines recombinantes/composition chimique , Polyosides/composition chimique , Polyosides/analyse , Lectines/composition chimique , Glycosylation , Laboratoire automatique/méthodes
13.
Org Lett ; 26(27): 5746-5751, 2024 Jul 12.
Article de Anglais | MEDLINE | ID: mdl-38953872

RÉSUMÉ

We herein report for the first time the inter- and intramolecular orthogonal cleavage of two ortho-nitrobenzyl (NB) analogues. It is shown that the nitroveratryl (NV) group can be photolyzed with high priority when NV and ortho-nitrobenzyl carbonate (oNBC) are used together as the protecting groups of glycans. Notably, the photolytic products could be used directly in the subsequent glycosylation without further purification. With the above-mentioned orthogonal photolabile protecting group strategy in hand, a Mycobacterium tuberculosis tetrasaccharide and a derivative of glucosyl glycerol were rapidly prepared.


Sujet(s)
Mycobacterium tuberculosis , Oligosaccharides , Glycosylation , Structure moléculaire , Mycobacterium tuberculosis/composition chimique , Nitrobenzènes/composition chimique , Oligosaccharides/composition chimique , Oligosaccharides/synthèse chimique
14.
J Agric Food Chem ; 72(28): 15823-15831, 2024 Jul 17.
Article de Anglais | MEDLINE | ID: mdl-38959519

RÉSUMÉ

Given the low-calorie, high-sweetness characteristics of steviol glycosides (SGs), developing SGs with improved taste profiles is a key focus. Rebaudioside M8 (Reb M8), a novel non-natural SG derivative obtained through glycosylation at the C-13 position of rebaudioside D (Reb D) using glycosyltransferase UGT94E13, holds promise for further development due to its enhanced sweetness. However, the low catalytic activity of UGT94E13 hampers further research and commercialization. This study aimed to improve the enzymatic activity of UGT94E13 through semirational design, and a variant UGT94E13-F169G/I185G was obtained with the catalytic activity improved by 13.90 times. A cascade reaction involving UGT94E13-F169G/I185G and sucrose synthase AtSuSy was established to recycle uridine diphosphate glucose, resulting in an efficient preparation of Reb M8 with a yield of 98%. Moreover, according to the analysis of the distances between the substrate Reb D and enzymes as well as between Reb D and the glucose donor through molecular dynamics simulations, it is found that the positive effect of shortening the distance on glycosylation reaction activity accounts for the improved catalytic activity of UGT94E13-F169G/I185G. Therefore, this study addresses the bottleneck in the efficient production of Reb M8 and provides a foundation for its widespread application in the food industry.


Sujet(s)
Diterpènes de type kaurane , Glycosyltransferase , Diterpènes de type kaurane/composition chimique , Diterpènes de type kaurane/métabolisme , Glycosyltransferase/métabolisme , Glycosyltransferase/composition chimique , Glycosyltransferase/génétique , Glycosylation , Édulcorants/composition chimique , Édulcorants/métabolisme , Stevia/composition chimique , Stevia/enzymologie , Stevia/métabolisme , Stevia/génétique , Protéines végétales/composition chimique , Protéines végétales/métabolisme , Protéines végétales/génétique , Ingénierie des protéines , Glucosyltransferases/composition chimique , Glucosyltransferases/métabolisme , Glucosyltransferases/génétique , Hétérosides
15.
Nat Commun ; 15(1): 5841, 2024 Jul 11.
Article de Anglais | MEDLINE | ID: mdl-38992036

RÉSUMÉ

The swimming device of archaea-the archaellum-presents asparagine (N)-linked glycans. While N-glycosylation serves numerous roles in archaea, including enabling their survival in extreme environments, how this post-translational modification contributes to cell motility remains under-explored. Here, we report the cryo-EM structure of archaellum filaments from the haloarchaeon Halobacterium salinarum, where archaellins, the building blocks of the archaellum, are N-glycosylated, and the N-glycosylation pathway is well-resolved. We further determined structures of archaellum filaments from two N-glycosylation mutant strains that generate truncated glycans and analyzed their motility. While cells from the parent strain exhibited unidirectional motility, the N-glycosylation mutant strain cells swam in ever-changing directions within a limited area. Although these mutant strain cells presented archaellum filaments that were highly similar in architecture to those of the parent strain, N-linked glycan truncation greatly affected interactions between archaellum filaments, leading to dramatic clustering of both isolated and cell-attached filaments. We propose that the N-linked tetrasaccharides decorating archaellins act as physical spacers that minimize the archaellum filament aggregation that limits cell motility.


Sujet(s)
Protéines d'archée , Halobacterium salinarum , Glycosylation , Halobacterium salinarum/métabolisme , Halobacterium salinarum/génétique , Protéines d'archée/métabolisme , Protéines d'archée/génétique , Protéines d'archée/composition chimique , Polyosides/métabolisme , Cryomicroscopie électronique , Mutation , Cytosquelette/métabolisme , Maturation post-traductionnelle des protéines , Mouvement cellulaire
16.
Nat Commun ; 15(1): 5830, 2024 Jul 11.
Article de Anglais | MEDLINE | ID: mdl-38992057

RÉSUMÉ

Impaired ion channels regulating Golgi pH lead to structural alterations in the Golgi apparatus, such as fragmentation, which is found, along with cognitive impairment, in Alzheimer's disease. However, the causal relationship between altered Golgi structure and cognitive impairment remains elusive due to the lack of understanding of ion channels in the Golgi apparatus of brain cells. Here, we identify that a transmembrane protein TMEM87A, renamed Golgi-pH-regulating cation channel (GolpHCat), expressed in astrocytes and neurons that contributes to hippocampus-dependent memory. We find that GolpHCat displays unique voltage-dependent currents, which is potently inhibited by gluconate. Additionally, we gain structural insights into the ion conduction through GolpHCat at the molecular level by determining three high-resolution cryogenic-electron microscopy structures of human GolpHCat. GolpHCat-knockout mice show fragmented Golgi morphology and altered protein glycosylation and functions in the hippocampus, leading to impaired spatial memory. These findings suggest a molecular target for Golgi-related diseases and cognitive impairment.


Sujet(s)
Appareil de Golgi , Hippocampe , Souris knockout , Neurones , Appareil de Golgi/métabolisme , Animaux , Hippocampe/métabolisme , Humains , Souris , Neurones/métabolisme , Concentration en ions d'hydrogène , Astrocytes/métabolisme , Protéines membranaires/métabolisme , Protéines membranaires/génétique , Mâle , Souris de lignée C57BL , Cellules HEK293 , Mémoire spatiale/physiologie , Canaux ioniques/métabolisme , Canaux ioniques/génétique , Mémoire/physiologie , Glycosylation , Cryomicroscopie électronique , Dysfonctionnement cognitif/métabolisme , Dysfonctionnement cognitif/physiopathologie , Dysfonctionnement cognitif/anatomopathologie
17.
Curr Protoc ; 4(7): e1100, 2024 Jul.
Article de Anglais | MEDLINE | ID: mdl-38984456

RÉSUMÉ

Mucin-domain glycoproteins are characterized by their high density of glycosylated serine and threonine residues, which complicates their analysis by mass spectrometry. The dense glycosylation renders the protein backbone inaccessible to workhorse proteases like trypsin, the vast heterogeneity of glycosylation often results in ion suppression from unmodified peptides, and search algorithms struggle to confidently analyze and site-localize O-glycosites. We have made a number of advances to address these challenges, rendering mucinomics possible for the first time. Here, we summarize these contributions and provide a detailed protocol for mass spectrometric analysis of mucin-domain glycoproteins. © 2024 Wiley Periodicals LLC. Basic Protocol 1: Enrichment of mucin-domain glycoproteins Basic Protocol 2: Enzymatic digestion of mucin-domain glycoprotein(s) Basic Protocol 3: Mass spectrometry data collection for O-glycopeptides Basic Protocol 4: Mass spectrometry data analysis of O-glycopeptides.


Sujet(s)
Glycoprotéines , Spectrométrie de masse , Mucines , Spectrométrie de masse/méthodes , Mucines/composition chimique , Mucines/métabolisme , Mucines/analyse , Glycoprotéines/composition chimique , Glycoprotéines/métabolisme , Glycoprotéines/analyse , Glycosylation , Humains , Glycopeptides/analyse , Glycopeptides/composition chimique , Glycopeptides/métabolisme
18.
Front Immunol ; 15: 1409461, 2024.
Article de Anglais | MEDLINE | ID: mdl-38979425

RÉSUMÉ

Primary immune thrombocytopenia (ITP) is an acquired autoimmune disorder characterized by the destruction of platelets. Although it was long believed that the critical role of autoantibodies in platelet destruction, primarily through the Fc-dependent platelet clearance pathway, recent findings indicate that the significance of the Fc-independent platelet clearance pathway mediated by hepatocytes, thus shedding light on a previously obscure aspect of ITP pathogenesis. Within this context, the desialylation of platelets has emerged as a pivotal biochemical marker. Consequently, targeting platelet desialylation emerges as a novel therapeutic strategy in the pathogenesis of ITP. Notably, prevailing research has largely focused on antiplatelet antibodies and the glycosylation-associated mechanisms of platelet clearance, while comprehensive analysis of platelet desialylation remains scant. In response, we retrospectively discuss the historical progression, inducing factors, generation process, and molecular regulatory mechanisms underlying platelet desialylation in ITP pathogenesis. By systematically evaluating the most recent research findings, we contribute to a comprehensive understanding of the intricate processes involved. Moreover, our manuscript delves into the potential application of desialylation regulatory strategies in ITP therapy, heralding novel therapeutic avenues. In conclusion, this manuscript not only fills a critical void in existing literature but also paves the way for future research by establishing a systematic theoretical framework. By inspiring new research ideas and offering insights into the development of new therapeutic strategies and targeted drugs, our study is poised to significantly advance the clinical management of ITP.


Sujet(s)
Marqueurs biologiques , Plaquettes , Purpura thrombopénique idiopathique , Humains , Purpura thrombopénique idiopathique/sang , Purpura thrombopénique idiopathique/immunologie , Purpura thrombopénique idiopathique/thérapie , Plaquettes/métabolisme , Plaquettes/immunologie , Animaux , Autoanticorps/sang , Autoanticorps/immunologie , Glycosylation
19.
J Med Virol ; 96(7): e29793, 2024 Jul.
Article de Anglais | MEDLINE | ID: mdl-39023111

RÉSUMÉ

Various vaccine platforms were developed and deployed against the COVID-19 disease. The Fc-mediated functions of IgG antibodies are essential in the adaptive immune response elicited by vaccines. However, the long-term changes of protein subunit vaccines and their combinations with messenger RNA (mRNA) vaccines are unknown. A total of 272 serum and plasma samples were collected from individuals who received first to third doses of the protein subunit Medigen, the mRNA (BNT, Moderna), or the adenovector AstraZeneca vaccines. The IgG subclass level was measured using enzyme-linked immunosorbent assay, and Fc-N glycosylation was measured using liquid chromatography coupled to tandem mass spectrometry. Antibody-dependent-cellular-phagocytosis (ADCP) and complement deposition (ADCD) of anti-spike (S) IgG antibodies were measured by flow cytometry. IgG1 and 3 reached the highest anti-S IgG subclass level. IgG1, 2, and 4 subclass levels significantly increased in mRNA- and Medigen-vaccinated individuals. Fc-glycosylation was stable, except in female BNT vaccinees, who showed increased bisection and decreased galactosylation. Female BNT vaccinees had a higher anti-S IgG titer than that of males. ADCP declined in all groups. ADCD was significantly lower in AstraZeneca-vaccinated individuals. Each vaccine produced specific long-term changes in Fc structure and function. This finding is critical when selecting a vaccine platform or combination to achieve the desired immune response.


Sujet(s)
Anticorps antiviraux , Vaccins contre la COVID-19 , COVID-19 , Immunoglobuline G , SARS-CoV-2 , Vaccins sous-unitaires , Vaccins à ARNm , Humains , Immunoglobuline G/sang , Femelle , Anticorps antiviraux/sang , Mâle , COVID-19/prévention et contrôle , COVID-19/immunologie , SARS-CoV-2/immunologie , SARS-CoV-2/génétique , Adulte , Adulte d'âge moyen , Vaccins contre la COVID-19/immunologie , Vaccins sous-unitaires/immunologie , Vaccins sous-unitaires/génétique , Vaccins sous-unitaires/administration et posologie , Glycosylation , Glycoprotéine de spicule des coronavirus/immunologie , Glycoprotéine de spicule des coronavirus/génétique , Sujet âgé , ARN messager/génétique , Jeune adulte ,
20.
Adv Exp Med Biol ; 1445: 59-71, 2024.
Article de Anglais | MEDLINE | ID: mdl-38967750

RÉSUMÉ

According to classical immunology theory, immunoglobulin (Ig) is exclusively produced by differentiated B lymphocytes, which exhibit a typical tetrapeptide chain structure and are predominantly present on the surface of B cells and in bodily fluids. B-Ig is one of the critical effector molecules for humoral immune responses specifically recognising antigens and eliminating them. However, mounting evidence has demonstrated that Ig is widely expressed in non B lineage cells, especially malignant ones (referred to as non B-Ig). Interestingly, non B-Ig mainly resides in the cytoplasm and secretion, but to some extent on the cell surface. Furthermore non B-Ig not only displays a tetrapeptide chain structure but also shows free heavy chains and free light chains (FLCs). Additionally, Ig derived from non B cancer cell typically displays unique glycosylation modifications. Functionally, non B-Ig demonstrated diversity and versatility, showing antibody activity and cellular biological activity, such as promoting cell proliferation and survival, and it is implicated in cancer progression and some immune-related diseases, such as renal diseases.


Sujet(s)
Lymphocytes B , Humains , Animaux , Glycosylation , Lymphocytes B/immunologie , Immunoglobulines/immunologie , Immunoglobulines/métabolisme , Immunoglobulines/composition chimique , Tumeurs/immunologie , Tumeurs/anatomopathologie , Chaines légères des immunoglobulines/composition chimique , Chaines légères des immunoglobulines/immunologie , Chaines légères des immunoglobulines/métabolisme
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