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1.
Sci Rep ; 14(1): 14973, 2024 06 28.
Article de Anglais | MEDLINE | ID: mdl-38951658

RÉSUMÉ

Deamination of bases is a form of DNA damage that occurs spontaneously via the hydrolysis and nitrosation of living cells, generating hypoxanthine from adenine. E. coli endonuclease V (eEndoV) cleaves hypoxanthine-containing double-stranded DNA, whereas human endonuclease V (hEndoV) cleaves hypoxanthine-containing RNA; however, hEndoV in vivo function remains unclear. To date, hEndoV has only been examined using hypoxanthine, because it binds closely to the base located at the cleavage site. Here, we examined whether hEndoV cleaves other lesions (e.g., AP site, 6-methyladenine, xanthine) to reveal its function and whether 2'-nucleoside modification affects its cleavage activity. We observed that hEndoV is hypoxanthine-specific; its activity was the highest with 2'-OH modification in ribose. The cleavage activity of hEndoV was compared based on its base sequence. We observed that it has specificity for adenine located on the 3'-end of hypoxanthine at the cleavage site, both before and after cleavage. These data suggest that hEndoV recognizes and cleaves the inosine generated on the poly A tail to maintain RNA quality. Our results provide mechanistic insight into the role of hEndoV in vivo.


Sujet(s)
Inosine , Inosine/métabolisme , Humains , Poly A/métabolisme , Spécificité du substrat , Hypoxanthine/métabolisme , Hypoxanthine/composition chimique , Endodeoxyribonucleases/métabolisme , Endodeoxyribonucleases/composition chimique
2.
Front Endocrinol (Lausanne) ; 15: 1308841, 2024.
Article de Anglais | MEDLINE | ID: mdl-38962681

RÉSUMÉ

Background: Untargeted metabonomics has provided new insight into the pathogenesis of sarcopenia. In this study, we explored plasma metabolic signatures linked to a heightened risk of sarcopenia in a cohort study by LC-MS-based untargeted metabonomics. Methods: In this nested case-control study from the Adult Physical Fitness and Health Cohort Study (APFHCS), we collected blood plasma samples from 30 new-onset sarcopenia subjects (mean age 73.2 ± 5.6 years) and 30 healthy controls (mean age 74.2 ± 4.6 years) matched by age, sex, BMI, lifestyle, and comorbidities. An untargeted metabolomics methodology was employed to discern the metabolomic profile alterations present in individuals exhibiting newly diagnosed sarcopenia. Results: In comparing individuals with new-onset sarcopenia to normal controls, a comprehensive analysis using liquid chromatography-mass spectrometry (LC-MS) identified a total of 62 metabolites, predominantly comprising lipids, lipid-like molecules, organic acids, and derivatives. Receiver operating characteristic (ROC) curve analysis indicated that the three metabolites hypoxanthine (AUC=0.819, 95% CI=0.711-0.927), L-2-amino-3-oxobutanoic acid (AUC=0.733, 95% CI=0.598-0.868) and PC(14:0/20:2(11Z,14Z)) (AUC= 0.717, 95% CI=0.587-0.846) had the highest areas under the curve. Then, these significant metabolites were observed to be notably enriched in four distinct metabolic pathways, namely, "purine metabolism"; "parathyroid hormone synthesis, secretion and action"; "choline metabolism in cancer"; and "tuberculosis". Conclusion: The current investigation elucidates the metabolic perturbations observed in individuals diagnosed with sarcopenia. The identified metabolites hold promise as potential biomarkers, offering avenues for exploring the underlying pathological mechanisms associated with sarcopenia.


Sujet(s)
Métabolomique , Sarcopénie , Humains , Sarcopénie/métabolisme , Sarcopénie/sang , Mâle , Métabolomique/méthodes , Femelle , Sujet âgé , Études cas-témoins , Chromatographie en phase liquide/méthodes , Marqueurs biologiques/sang , Études de cohortes , Métabolome , Sujet âgé de 80 ans ou plus , Spectrométrie de masse/méthodes , Facteurs de risque , Hypoxanthine/sang , Hypoxanthine/métabolisme ,
3.
Cells ; 13(5)2024 Feb 21.
Article de Anglais | MEDLINE | ID: mdl-38474337

RÉSUMÉ

Inflammatory bowel disease (IBD) is marked by a state of chronic energy deficiency that limits gut tissue wound healing. This energy shortfall is partially due to microbiota dysbiosis, resulting in the loss of microbiota-derived metabolites, which the epithelium relies on for energy procurement. The role of microbiota-sourced purines, such as hypoxanthine, as substrates salvaged by the colonic epithelium for nucleotide biogenesis and energy balance, has recently been appreciated for homeostasis and wound healing. Allopurinol, a synthetic hypoxanthine isomer commonly prescribed to treat excess uric acid in the blood, inhibits the degradation of hypoxanthine by xanthine oxidase, but also inhibits purine salvage. Although the use of allopurinol is common, studies regarding how allopurinol influences the gastrointestinal tract during colitis are largely nonexistent. In this work, a series of in vitro and in vivo experiments were performed to dissect the relationship between allopurinol, allopurinol metabolites, and colonic epithelial metabolism and function in health and during disease. Of particular significance, the in vivo investigation identified that a therapeutically relevant allopurinol dose shifts adenylate and creatine metabolism, leading to AMPK dysregulation and disrupted proliferation to attenuate wound healing and increased tissue damage in murine experimental colitis. Collectively, these findings underscore the importance of purine salvage on cellular metabolism and gut health in the context of IBD and provide insight regarding the use of allopurinol in patients with IBD.


Sujet(s)
Colite , Maladies inflammatoires intestinales , Humains , Souris , Animaux , Allopurinol , Purines/métabolisme , Hypoxanthine/métabolisme , Colite/traitement médicamenteux , Maladies inflammatoires intestinales/traitement médicamenteux
4.
Mol Biochem Parasitol ; 258: 111616, 2024 Jun.
Article de Anglais | MEDLINE | ID: mdl-38401850

RÉSUMÉ

Trypanosoma cruzi is a protozoan parasite and the etiological agent of Chagas disease, a debilitating and sometimes fatal disease that continues to spread to new areas. Yet, Chagas disease is still only treated with two related nitro compounds that are insufficiently effective and cause severe side effects. Nucleotide metabolism is one of the known vulnerabilities of T. cruzi, as they are auxotrophic for purines, and nucleoside analogues have been shown to have genuine promise against this parasite in vitro and in vivo. Since purine antimetabolites require efficient uptake through transporters, we here report a detailed characterisation of the T. cruzi NB1 nucleobase transporter with the aim of elucidating the interactions between TcrNB1 and its substrates and finding the positions that can be altered in the design of novel antimetabolites without losing transportability. Systematically determining the inhibition constants (Ki) of purine analogues for TcrNB1 yielded their Gibbs free energy of interaction, ΔG0. Pairwise comparisons of substrate (hypoxanthine, guanine, adenine) and analogues allowed us to determine that optimal binding affinity by TcrNB1 requires interactions with all four nitrogen residues of the purine ring, with N1 and N9, in protonation state, functioning as presumed hydrogen bond donors and unprotonated N3 and N7 as hydrogen bond acceptors. This is the same interaction pattern as we previously described for the main nucleobase transporters of Trypanosoma brucei spp. and Leishmania major and makes it the first of the ENT-family genes that is functionally as well as genetically conserved between the three main kinetoplast pathogens.


Sujet(s)
Guanine , Hypoxanthine , Trypanosoma cruzi , Trypanosoma cruzi/métabolisme , Trypanosoma cruzi/génétique , Trypanosoma cruzi/composition chimique , Guanine/métabolisme , Hypoxanthine/métabolisme , Protéines de protozoaire/métabolisme , Protéines de protozoaire/génétique , Protéines de protozoaire/composition chimique , Transporteurs de nucléobases/métabolisme , Transporteurs de nucléobases/génétique , Transporteurs de nucléobases/composition chimique , Transport biologique , Spécificité du substrat , Liaison aux protéines , Nucléosides/métabolisme
5.
Int J Antimicrob Agents ; 62(3): 106894, 2023 Sep.
Article de Anglais | MEDLINE | ID: mdl-37348620

RÉSUMÉ

In the absence of a highly efficacious vaccine, chemotherapy remains the cornerstone to control malaria morbidity and mortality. The threat of the emergence of parasites resistant to artemisinin-based combination therapies highlights the need for new antimalarial drugs ideally with superior properties. The killing rate reflects the speed of action of antimalarial drugs, which can be measured in vitro through the parasite reduction ratio (PRR) assay to shortlist interesting candidates. As a standard, the in vitro PRR assay is performed by measuring [3H]hypoxanthine incorporation of Plasmodium falciparum. This methodology is restricted to specialised laboratories owing to the handling of radioactive material. In this work, we describe a sandwich enzyme-linked immunosorbent assay to detect P. falciparum histidine-rich protein 2 (HRP-2) as an alternative methodology to assess the PRR. We first validated the methodology with established antimalarial drugs (artesunate, chloroquine, pyrimethamine and atovaquone) by comparing our results with previous results of the [3H]hypoxanthine incorporation readout provided by an expert laboratory, and subsequently assessed the speed of action of four new antimalarial candidates (compound 22, chlorotonil A, boromycin and ivermectin). The HRP-2 PRR assay achieved comparable results to the [3H]hypoxanthine incorporation readout in terms of parasite growth rate over time, lag phase and parasite clearance time. In addition, parasite growth following drug exposure was quantified after 7, 14, 21 and 28 days of recovery time. In conclusion, the PRR assay based on HRP-2 is similar to [3H]hypoxanthine in determining a drug's parasite killing rate and can be widely used in all research laboratories.


Sujet(s)
Antipaludiques , Paludisme à Plasmodium falciparum , Parasites , Animaux , Antipaludiques/usage thérapeutique , Parasites/métabolisme , Plasmodium falciparum , Hypoxanthine/métabolisme , Hypoxanthine/usage thérapeutique , Chloroquine/usage thérapeutique , Paludisme à Plasmodium falciparum/traitement médicamenteux
6.
J Perinat Med ; 51(1): 20-26, 2023 Jan 27.
Article de Anglais | MEDLINE | ID: mdl-35848535

RÉSUMÉ

Hypoxanthine is a purine metabolite which increases during hypoxia and therefore is an indicator of this condition. Further, when hypoxanthine is oxidized to uric acid in the presence of xanthine oxidase, oxygen radicals are generated. This was the theoretical basis for suggesting and studying, beginning in the 1990s, resuscitation of newborn infants with air instead of the traditional 100% O2. These studies demonstrated a 30% reduction in mortality when resuscitation of term and near term infants was carried out with air compared to pure oxygen. The mechanism for this is not fully understood, however the hypoxanthine -xanthine oxidase system increases oxidative stress and plays a role in regulation of the perinatal circulation. Further, hyperoxic resuscitation inhibits mitochondrial function, and one reason may be that genes involved in ATP production are down-regulated. Thus, the study of one single molecule, hypoxanthine, has contributed to the global prevention of an estimated 2-500,000 annual infant deaths.


Sujet(s)
Hypoxanthine , Hypoxie , Oxygène , Femelle , Humains , Nourrisson , Nouveau-né , Grossesse , Hypoxanthine/métabolisme , Hypoxanthines/métabolisme , Hypoxie/métabolisme , Oxygène/métabolisme , Acide urique/métabolisme , Xanthine oxidase/métabolisme
7.
J Am Chem Soc ; 144(11): 5180-5189, 2022 03 23.
Article de Anglais | MEDLINE | ID: mdl-35255213

RÉSUMÉ

Highly reflective crystals of the nucleotide base guanine are widely distributed in animal coloration and visual systems. Organisms precisely control the morphology and organization of the crystals to optimize different optical effects, but little is known about how this is achieved. Here we examine a fundamental question that has remained unanswered after over 100 years of research on guanine: what are the crystals made of? Using solution-state and solid-state chemical techniques coupled with structural analysis by powder XRD and solid-state NMR, we compare the purine compositions and the structures of seven biogenic guanine crystals with different crystal morphologies, testing the hypothesis that intracrystalline dopants influence the crystal shape. We find that biogenic "guanine" crystals are not pure crystals but molecular alloys (aka solid solutions and mixed crystals) of guanine, hypoxanthine, and sometimes xanthine. Guanine host crystals occlude homogeneous mixtures of other purines, sometimes in remarkably large amounts (up to 20% of hypoxanthine), without significantly altering the crystal structure of the guanine host. We find no correlation between the biogenic crystal morphology and dopant content and conclude that dopants do not dictate the crystal morphology of the guanine host. The ability of guanine crystals to host other molecules enables animals to build physiologically "cheaper" crystals from mixtures of metabolically available purines, without impeding optical functionality. The exceptional levels of doping in biogenic guanine offer inspiration for the design of mixed molecular crystals that incorporate multiple functionalities in a single material.


Sujet(s)
Guanine , Purines , Animaux , Guanine/métabolisme , Hypoxanthine/métabolisme , Purines/composition chimique , Xanthine/métabolisme
8.
Nucleosides Nucleotides Nucleic Acids ; 41(12): 1279-1286, 2022.
Article de Anglais | MEDLINE | ID: mdl-35094660

RÉSUMÉ

LLC-PK1 renal cells show Na+-dependent and Na+-independent hypoxanthine uptake. While the latter is inhibited by adenine, neither are inhibited by xanthine. In rats, intestinal Na+-dependent hypoxanthine transporter Slc23a4 is not expressed in the kidney, and its action is inhibited by xanthine. This study aimed to clone Slc23a4-paralog SLC23A3 from the human kidney and investigate its hypoxanthine transport activity. We observed Na+-dependent 10 nM [3H]-hypoxanthine uptake in SLC23A3 RNA-injected Xenopus oocytes. Moreover, 100 µM xanthine did not inhibit Na+-independent 300 nM [3H]-hypoxanthine uptake, whereas 100 µM adenine did. These results confirm that SLC23A3 is a hypoxanthine transporter in the human kidney.


Sujet(s)
Rein , Protéines de transport membranaire , Humains , Rats , Animaux , Hypoxanthine/métabolisme , Rein/métabolisme , Protéines de transport membranaire/métabolisme , Transport biologique , Sodium/métabolisme , Sodium/pharmacologie , Adénine/métabolisme , Xanthines/métabolisme
9.
Blood Transfus ; 20(2): 120-126, 2022 03.
Article de Anglais | MEDLINE | ID: mdl-33370225

RÉSUMÉ

BACKGROUND: Red blood cell (RBC) units may contain a variety of molecules that can activate the neutrophil cascade turning neutrophils into targets for immunomodulatory molecules. Our metabolomics profiling of RBC units revealed a significant increase of hypoxanthine concentration during storage. Hypoxanthine catabolism in vivo ends with the production of uric acid through a reaction catalysed by xanthine oxidase during which reactive oxygen species are generated. Some authors have described in vitro neutrophil activation after treatment with stored RBC medium. However, the response of neutrophils to the action of xanthine oxidase upon hypoxanthine accumulation in the supernatant of RBC units has never been investigated. MATERIALS AND METHODS: Neutrophils were isolated from peripheral whole blood and cultured at 37 °C in a humidified incubator with 5% CO2. Hypoxanthine and RBC supernatants were tested to verify neutrophil stimulation. To prove the involvement of hypoxanthine in neutrophil activation, xanthine oxidase was pre-incubated with or without allopurinol before addition to the neutrophil cultures. Intracellular expression of tumour necrosis factor-α (TNF-α) and interleukin-8 (IL-8) was assessed by a cytofluorimetric assay and early-stage release of IL-8 was detected by a Luminex® assay. RESULTS: In the presence of xanthine oxidase, hypoxanthine, alone and in combination with RBC supernatants, caused increases of TNF-α- and IL-8-positive cells after 5 hours of treatment. Moreover, IL-8 was quickly released, 30 min after stimulation. DISCUSSION: Here we show, for the first time, that neutrophil activation by stored RBC depends, in part, on the presence of hypoxanthine contained in the RBC units. Our results add hypoxanthine to the already known mediators of inflammation present in RBC units, supporting the evidence that medium from stored RBC may concur to boost inflammatory processes in transfusion recipients, potentially leading to negative post-transfusion outcomes.


Sujet(s)
Interleukine-8 , Activation des neutrophiles , Érythrocytes/métabolisme , Humains , Hypoxanthine/métabolisme , Hypoxanthine/pharmacologie , Facteur de nécrose tumorale alpha/métabolisme , Xanthine oxidase/métabolisme
10.
Nat Commun ; 12(1): 6176, 2021 10 26.
Article de Anglais | MEDLINE | ID: mdl-34702840

RÉSUMÉ

Serine is a non-essential amino acid that is critical for tumour proliferation and depletion of circulating serine results in reduced tumour growth and increased survival in various cancer models. While many cancer cells cultured in a standard tissue culture medium depend on exogenous serine for optimal growth, here we report that these cells are less sensitive to serine/glycine depletion in medium containing physiological levels of metabolites. The lower requirement for exogenous serine under these culture conditions reflects both increased de novo serine synthesis and the use of hypoxanthine (not present in the standard medium) to support purine synthesis. Limiting serine availability leads to increased uptake of extracellular hypoxanthine, sparing available serine for other pathways such as glutathione synthesis. Taken together these results improve our understanding of serine metabolism in physiologically relevant nutrient conditions and allow us to predict interventions that may enhance the therapeutic response to dietary serine/glycine limitation.


Sujet(s)
Tumeurs/métabolisme , Sérine/métabolisme , Voies de biosynthèse , Lignée cellulaire tumorale , Prolifération cellulaire , Milieux de culture/composition chimique , Milieux de culture/métabolisme , Glycine/analyse , Glycine/métabolisme , Humains , Hypoxanthine/analyse , Hypoxanthine/métabolisme , Tumeurs/diétothérapie , Tumeurs/anatomopathologie , Purines/biosynthèse , Sérine/analyse , Régulation positive
11.
Food Chem ; 346: 128904, 2021 Jun 01.
Article de Anglais | MEDLINE | ID: mdl-33450646

RÉSUMÉ

The extent to which the transformation of nucleotides, biogenic amines, and microbiological changes affect the quality and shelf life of vacuum packaged low processed rainbow trout (Oncorhynchus mykiss) gravad during storage at 7 ± 1 °C for 42 days was investigated. Although total viable counts increased slowly up to 6 log CFU g-1 at the end of storage, coliform bacteria disappeared. The histamine concentration and the biogenic amine index increased up to 45.2 ± 1.62 mg kg-1 and 100 mg kg-1 respectively. The highest concentration of inosine monophosphate was achieved in freshly prepared gravad, whereas the hypoxanthine level increased with storage time up to 28 days. Among nucleotide ratios, the G value is more suitable for the determination of gravad quality than K, Ki and H values. Once the gravad obtained the limit of acceptability by the panelists (35 days) the G value rose to 470%.


Sujet(s)
Bactéries/isolement et purification , Amines biogènes/analyse , Stockage des aliments/méthodes , Oncorhynchus mykiss/métabolisme , Nucléotides puriques/métabolisme , Animaux , Antioxydants/composition chimique , Qualité alimentaire , Histamine/analyse , Hypoxanthine/métabolisme , Oncorhynchus mykiss/microbiologie
12.
J Sep Sci ; 44(5): 954-962, 2021 Mar.
Article de Anglais | MEDLINE | ID: mdl-33348445

RÉSUMÉ

Creatinine and purines are gout-related metabolites commonly quantified by liquid chromatography coupled with ultraviolet and mass spectrometry. However, the high cost of liquid chromatography coupled with mass spectrometry hindered its extensive use in ordinary hospitals and clinical laboratories. Using the traditional liquid chromatography method, the full separation of these metabolites in complex biological samples is still not achieved. In this study, an improved ultra-high-performance liquid chromatography with ultraviolet spectroscopy method was reported for quantitative determination of five gout-related metabolites (i.e., creatinine, uric acid, hypoxanthine, xanthine, and inosine) in human serum within 10 min. A UHPLC system equipped with a hydrophilic C18 column was used to improve separation, shorten analysis time, and increase analysis throughput. The performance of the method was validated by evaluating linearity (squared correlation coefficient > 0.9991), recovery (92.8-100.0%, with relative standard deviation < 4.7%), accuracy (relative errors < 14.6%), precision (0.2-4.1% for intraday and 2.1-7.3% for interday) and stability (-14.1 to 8.3% in autosampler for 12 h and -13.3 to 2.2% for freeze-thaw cycles). This method was successfully applied to quantify gout-related metabolites in serum samples of healthy controls and gout patients, which was expected to be used in the clinical investigation of gout at different stages.


Sujet(s)
Créatinine/sang , Goutte/sang , Hypoxanthine/sang , Inosine/sang , Acide urique/sang , Xanthine/sang , Chromatographie en phase liquide à haute performance , Créatinine/métabolisme , Goutte/métabolisme , Humains , Hypoxanthine/métabolisme , Inosine/métabolisme , Acide urique/métabolisme , Xanthine/métabolisme
13.
DNA Repair (Amst) ; 97: 103030, 2021 01.
Article de Anglais | MEDLINE | ID: mdl-33360524

RÉSUMÉ

The hyperthermophilic and radioresistant euryarchaeon Thermococcus gammatolerans encodes a putative 3-methlyadenine DNA glycosylase II (Tg-AlkA). Herein, we report biochemical characterization and catalytic mechanism of Tg-AlkA. The recombinant Tg-AlkA can excise hypoxanthine (Hx) and 1-methlyadenine (1-meA) from dsDNA with varied efficiencies at high temperature. Notably, Tg-AlkA is a bi-functional glycosylase, which is sharply distinct from all the reported AlkAs. Biochemical data show that the optimal temperature and pH of Tg-AlkA for removing Hx from dsDNA are ca.70 °C and ca.7.0-8.0, respectively. Furthermore, the Tg-AlkA activity is independent of a divalent metal ion, and Mg2+ stimulates the Tg-AlkA activity whereas other divalent ions inhibit the enzyme activity with varied degrees. Mutational studies show that the Tg-AlkA W204A and D223A mutants abolish completely the excision activity, thereby suggesting that residues W204 and D223 are involved in catalysis. Surprisingly, the mutations of W204, D223, Y139 and W256 to alanine in Tg-AlkA lead to the increased affinity for binding DNA substrate with varied degrees, suggesting that these residues are flexible for conformational change of the enzyme. Therefore, Tg-AlkA is a novel AlkA that can remove Hx and 1-meA from dsDNA, thus providing insights into repair of deaminated and alkylated bases in DNA from hyperthermophilic Thermococcus.


Sujet(s)
Adénine/analogues et dérivés , Altération de l'ADN , DNA Glycosylases/métabolisme , Réparation de l'ADN , Hypoxanthine/métabolisme , Mutation , Thermococcus/enzymologie , Adénine/métabolisme , Séquence d'acides aminés , Protéines bactériennes/composition chimique , Protéines bactériennes/génétique , Protéines bactériennes/métabolisme , DNA Glycosylases/composition chimique , DNA Glycosylases/génétique , ADN bactérien/génétique , ADN bactérien/métabolisme , Température élevée , Concentration en ions d'hydrogène , Cinétique , Alignement de séquences , Spécificité du substrat , Thermococcus/génétique
14.
J Appl Microbiol ; 130(6): 2018-2028, 2021 Jun.
Article de Anglais | MEDLINE | ID: mdl-33152175

RÉSUMÉ

AIM: Erwinia amylovora is the causal agent of fire blight, a devastating disease of apples and pears. This study determines whether the E. amylovora guanine-hypoxanthine transporter (EaGhxP) is required for virulence and if it can import the E. amylovora produced toxic analogue 6-thioguanine (6TG) into cells. METHODS AND RESULTS: Characterization of EaGhxP in guanine transport deficient Escherichia coli reveals that it can transport guanine, hypoxanthine and the toxic analogues 8-azaguanine (8AG) and 6TG. Similarly, EaGhxP transports 8AG and 6TG into E. amylovora cells. EaGhxP has a high affinity for 6TG with a Ki of 3·7 µmol l-1 . An E. amylovora ⊿ghxP::Camr strain shows resistance to growth on 8AG and 6TG. Although EaGhxP is expressed during active disease propagation, it is not necessary for virulence as determined on immature apple and pear assays. CONCLUSIONS: EaGhxP is not required for virulence, but it does import 6TG into E. amylovora cells. SIGNIFICANCE AND IMPACT OF THE STUDY: As part of the disease establishment process, E. amylovora synthesizes and exports a toxic guanine derivative 6TG. Our results are counter intuitive and show that EaGhxP, an influx transporter, can move 6TG into cells raising questions regarding the role of 6TG in disease establishment.


Sujet(s)
Erwinia amylovora/métabolisme , Guanine/métabolisme , Hypoxanthine/métabolisme , Transporteurs de nucléobases/métabolisme , Tioguanine/métabolisme , 8-Azaguanine/métabolisme , Erwinia amylovora/enzymologie , Erwinia amylovora/génétique , Escherichia coli/génétique , Escherichia coli/métabolisme , Malus/microbiologie , Transporteurs de nucléobases/génétique , Maladies des plantes/microbiologie , Protéines recombinantes/génétique , Protéines recombinantes/métabolisme
15.
J Appl Microbiol ; 130(6): 2132-2140, 2021 Jun.
Article de Anglais | MEDLINE | ID: mdl-33090589

RÉSUMÉ

AIMS: Purine-degrading enzymes are favourable as medications and diagnostic tools for hyperuricemia. This study aimed to characterize enzymes isolated from micro-organisms, which may be useful for developing a new prophylaxis for hyperuricemia. METHODS AND RESULTS: Cellulosimicrobium funkei A153 was found to be a good catalyst for hypoxanthine degradation and could oxidize hypoxanthine to xanthine and further to uric acid. The enzyme catalysing this oxidation was purified, and its partial amino acid sequences were examined. Based on this information and genome sequencing results, this xanthine dehydrogenase family protein was cloned and expressed in Rhodococcus erythropolis L88. The recombinant enzyme with a His-tag was characterized. The enzyme was a xanthine oxidase as it could utilize molecular oxygen as an electron acceptor. It was stable under 50°C and exhibited maximum activity at pH 7·0. The kcat , Km and kcat /Km values for xanthine were 1·4 s-1 , 0·22 mmol l-1 and 6·4 s-1  mmol-1  l, respectively. CONCLUSIONS: Xanthine oxidase is favourable for hyperuricemia medication because it oxidizes hypoxanthine, an easily adsorbed purine, to xanthine and further to uric acid, which are hardly adsorbed purines. SIGNIFICANCE AND IMPACT OF THE STUDY: The enzyme is useful for decreasing serum uric acid levels via conversion of easily absorbed purines to hardly absorbed purines in the intestine. Enzymes from micro-organisms may be used as a novel prophylaxis for hyperuricemia.


Sujet(s)
Actinobacteria/enzymologie , Hypoxanthine/métabolisme , Purines/métabolisme , Rhodococcus/métabolisme , Xanthine oxidase/composition chimique , Actinobacteria/génétique , Séquence d'acides aminés , Protéines bactériennes , ADN bactérien , Oxydoréduction , Protéines recombinantes/métabolisme , Rhodococcus/génétique , Acide urique/métabolisme , Séquençage du génome entier , Xanthine/métabolisme , Xanthine dehydrogenase/métabolisme , Xanthine oxidase/génétique
16.
Food Chem ; 336: 127689, 2021 Jan 30.
Article de Anglais | MEDLINE | ID: mdl-32763736

RÉSUMÉ

Milk oxidases are an integral part of milk immune system, and good indicators for milk thermal history. Current assay methods for milk oxidases are either insensitive, tedious or not cost-effective. In this study, a high-throughput fluorescence assay method for determination of xanthine oxidase (XO) and polyamine oxidase (PAO) activities in milk samples was developed. The hydrogen peroxide generated by XO catalysed oxidation of hypoxanthine, and PAO catalysed oxidation of spermine, was coupled to horseradish peroxidase conversion of Amplex® Red (1-(3,7-dihydroxyphenoxazin-10-yl)ethanone) to the fluorescent product resorufin. The assay was highly sensitive, with limits of detection of activity in milk being 3 × 10-7 and 7 × 10-7 U/mL for XO and PAO, respectively. Intra-run and inter-run results showed good assay repeatability and reproducibility. The assay was successfully applied to survey the XO and PAO activities in human, bovine, goat and camel milk samples, and it can be readily adapted for measurements of other oxidase activities.


Sujet(s)
Dosages enzymatiques/méthodes , Lait/enzymologie , Oxidoreductases/métabolisme , Animaux , Biocatalyse , Chameaux , Bovins , Capra , Humains , Peroxyde d'hydrogène/métabolisme , Hypoxanthine/métabolisme , Limite de détection , Oxazines/métabolisme , Oxydoréduction , Spectrométrie de fluorescence
17.
Cell ; 182(6): 1460-1473.e17, 2020 09 17.
Article de Anglais | MEDLINE | ID: mdl-32916129

RÉSUMÉ

The gut microbiome has been implicated in multiple human chronic gastrointestinal (GI) disorders. Determining its mechanistic role in disease has been difficult due to apparent disconnects between animal and human studies and lack of an integrated multi-omics view of disease-specific physiological changes. We integrated longitudinal multi-omics data from the gut microbiome, metabolome, host epigenome, and transcriptome in the context of irritable bowel syndrome (IBS) host physiology. We identified IBS subtype-specific and symptom-related variation in microbial composition and function. A subset of identified changes in microbial metabolites correspond to host physiological mechanisms that are relevant to IBS. By integrating multiple data layers, we identified purine metabolism as a novel host-microbial metabolic pathway in IBS with translational potential. Our study highlights the importance of longitudinal sampling and integrating complementary multi-omics data to identify functional mechanisms that can serve as therapeutic targets in a comprehensive treatment strategy for chronic GI diseases. VIDEO ABSTRACT.


Sujet(s)
Microbiome gastro-intestinal/génétique , Régulation de l'expression des gènes/génétique , Syndrome du côlon irritable/métabolisme , Métabolome , Purines/métabolisme , Transcriptome/génétique , Animaux , Acides et sels biliaires/métabolisme , Biopsie , Butyrates/métabolisme , Chromatographie en phase liquide , Études transversales , Épigénomique , Fèces/microbiologie , Femelle , Microbiome gastro-intestinal/physiologie , Régulation de l'expression des gènes/physiologie , Interactions hôte-microbes/génétique , Humains , Hypoxanthine/métabolisme , Syndrome du côlon irritable/génétique , Syndrome du côlon irritable/microbiologie , Études longitudinales , Mâle , Métabolome/physiologie , Souris , Études observationnelles comme sujet , Études prospectives , Logiciel , Spectrométrie de masse en tandem , Transcriptome/physiologie
18.
J Photochem Photobiol B ; 211: 111994, 2020 Oct.
Article de Anglais | MEDLINE | ID: mdl-32858337

RÉSUMÉ

Circadian rhythm is the most important and universal biological rhythm in marine organisms. In this research, the movement behaviour of abalone (Haliotis discus hannai) was continuously monitored under a light cycle of 12 L:12D. It was found that the cumulative movement distance and cumulative movement time of abalone reached was highest from 00:00-03:00 h. The minimum values of maximum movement velocity occurred between 21:00-00:00 h, and a significant circadian cosine rhythm was exhibited during these periods (P < 0.05). Metabolomic analysis of cerebral ganglions of abalone was conducted at 06:00 h (6 M), 14:00 h (14 M), and 22:00 h (22 M) and 380, 385, and 315 metabolites with significant differences were identified in 6 M vs 14 M, 14 M vs 22 M, and 6 M vs 22 M, respectively (P < 0.05). With the alternation of day and night, the expression levels of phosphatidylcholine, 5-HT, N-acetyl-5-hydroxytryptamine, indole-3-acetaldehyde, hypoxanthine, and deoxyinosine declined significantly, while those of Lysophosphatidylcholines (lysoPC) (20: 5 (5Z, 8Z, 11Z, 14Z, 17Z)), lysoPC (22: 4 (7Z, 10Z, 13Z, 16Z)), lysoPC (16: 1 (9Z) / 0: 0), phosphatidylethanolamine (PE) (18: 1 (11Z) 22: 2 (13Z, 16Z)), and guanosine 5'-phosphate rose significantly. These 11 metabolites can be used as differential metabolic markers. These findings not only quantitatively describe the circadian movement behaviours of abalone, but also provide an initial analysis of the circadian mechanism of the physiological metabolic conversion of abalone, which in turn provides guidelines for light control and feeding strategy for use in aquaculture production.


Sujet(s)
Métabolome/physiologie , Mouvement/physiologie , Animaux , Échelle d'évaluation du comportement , Horloges circadiennes , Analyse de regroupements , Gastropoda , Hypoxanthine/analyse , Hypoxanthine/métabolisme , Indoles/analyse , Indoles/métabolisme , Inosine/analogues et dérivés , Inosine/analyse , Inosine/métabolisme , Lysolécithine/analyse , Lysolécithine/métabolisme , Phosphatidylcholines/analyse , Phosphatidylcholines/métabolisme , Phosphatidyléthanolamine/analyse , Phosphatidyléthanolamine/métabolisme , Sérotonine/analogues et dérivés , Sérotonine/analyse , Sérotonine/métabolisme , Spectrométrie de masse en tandem , Facteurs temps
19.
Mol Reprod Dev ; 87(9): 930-933, 2020 09.
Article de Anglais | MEDLINE | ID: mdl-32853477

RÉSUMÉ

The purine hypoxanthine plays important role in regulating oocyte maturation and early embryonic development. The enzyme hypoxanthine phosphoribosyltransferase (HPRT) recycles hypoxanthine to generate substrates for nucleotide synthesis and key metabolites, and here we show that HPRT deficiency in the rat disrupts early embryonic development and causes infertility in females.


Sujet(s)
Infertilité féminine/étiologie , Syndrome de Lesch-Nyhan/complications , Animaux , Développement embryonnaire/génétique , Femelle , Fécondité/génétique , Viabilité foetale/génétique , Hypoxanthine/métabolisme , Hypoxanthine phosphoribosyltransferase/déficit , Hypoxanthine phosphoribosyltransferase/génétique , Hypoxanthine phosphoribosyltransferase/métabolisme , Infertilité féminine/génétique , Syndrome de Lesch-Nyhan/génétique , Syndrome de Lesch-Nyhan/anatomopathologie , Grossesse , Purines/métabolisme , Rats
20.
Development ; 147(13)2020 07 03.
Article de Anglais | MEDLINE | ID: mdl-32620578

RÉSUMÉ

In mammalian growing follicles, oocytes are arrested at the diplotene stage (which resembles the G2/M boundary in mitosis), while the granulosa cells (GCs) continue to proliferate during follicular development, reflecting a cell cycle asynchrony between oocytes and GCs. Hypoxanthine (Hx), a purine present in the follicular fluid, has been shown to induce oocytes meiotic arrest, although its role in GC proliferation remains ill-defined. Here, we demonstrate that Hx indiscriminately prevents G2-to-M phase transition in porcine GCs. However, oocyte-derived paracrine factors (ODPFs), particularly GDF9 and BMP15, maintain the proliferation of GCs, partly by activating the ERK1/2 signaling and enabling the G2/M transition that is suppressed by Hx. Interestingly, GCs with lower expression of GDF9/BMP15 receptors appear to be more sensitive to Hx-induced G2/M arrest and become easily detached from the follicular wall. Importantly, Hx-mediated inhibition of G2/M progression instigates GC apoptosis, which is ameliorated in the presence of GDF9 and/or BMP15. Therefore, our data indicate that the counterbalance of intrafollicular factors, particularly Hx and oocyte-derived GDF9/BMP15, fine-tunes the development of porcine follicles by regulating the cell cycle progression of GCs.


Sujet(s)
Cellules de la granulosa/métabolisme , Hypoxanthine/métabolisme , Ovocytes/métabolisme , Animaux , Apoptose/génétique , Apoptose/physiologie , Protéine morphogénétique osseuse de type 15/génétique , Protéine morphogénétique osseuse de type 15/métabolisme , Prolifération cellulaire/génétique , Prolifération cellulaire/physiologie , Femelle , Points de contrôle de la phase G2 du cycle cellulaire/génétique , Points de contrôle de la phase G2 du cycle cellulaire/physiologie , Facteur-9 de croissance et de différenciation/génétique , Facteur-9 de croissance et de différenciation/métabolisme , Suidae
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