Microenvironment mapping via Dexter energy transfer on immune cells.

Many disease pathologies can be understood through the elucidation of localized biomolecular networks, or microenvironments. To this end, enzymatic proximity labeling platforms are broadly applied for mapping the wider spatial relationships in subcellular architectures. However, technologies that can map microenvironments with higher precision have long been sought. Here, we describe a microenvironment-mapping platform that exploits photocatalytic carbene generation to selectively identify protein-protein interactions on cell membranes, an approach we term MicroMap (µMap). By using a photocatalyst-antibody conjugate to spatially localize carbene generation, we demonstrate selective labeling of antibody binding targets and their microenvironment protein neighbors. This technique identified the constituent proteins of the programmed-death ligand 1 (PD-L1) microenvironment in live lymphocytes and selectively labeled within an immunosynaptic junction.

Radiolysis via radioactivity is not responsible for rapid methane oxidation in subterranean air.

Atmospheric methane is rapidly lost when it enters humid subterranean critical and vadose zones (e.g., air in soils and caves). Because methane is a source of carbon and energy, it can be consumed by methanotrophic methane-oxidizing bacteria. As an additional subterranean sink, it has been hypothesized that methane is oxidized by natural radioactivity-induced radiolysis that produces energetic ions and radicals, which then trigger abiotic oxidation and consumption of methane within a few hours. Using controlled laboratory experiments, we tested whether radiolysis could rapidly oxidize methane in sealed air with different relative humidities while being exposed to elevated levels of radiation (more than 535 kBq m-3) from radon isotopes 222Rn and 220Rn (i.e., thoron). We found no evidence that radiolysis contributed to methane oxidation. In contrast, we observed the rapid loss of methane when moist soil was added to the same apparatus in the absence of elevated radon abundance. Together, our findings are consistent with the view that methane oxidizing bacteria are responsible for the widespread observations of methane depletion in subterranean environments. Further studies are needed on the ability of microbes to consume trace amounts of methane in poorly ventilated caves, even though the trophic and energetic benefits become marginal at very low partial pressures of methane.

On the Synthesis of Chocolate Flavonoids (Propanols, Butanals) in the Interstellar Medium.

Complex organic molecules are ubiquitous in star- and planet-forming regions as well as on comets such as on 67P/Churyumov-Gerasimenko, but their origins have remained largely unexplained until now. Here, we report the first laboratory detection of distinct C3 H8 O (propanol, methyl ethyl ether) and C4 H8 O (n-butanal, i-butanal) isomers formed within interstellar analog ices through interaction with ionizing radiation. This study reveals that complex organics with propyl (C3 H7 ) and butyl (C4 H9 ) groups can be synthesized easily in deep space and may act as key evolutionary tracers of a cosmic ray driven non-equilibrium chemistry in low temperature interstellar ices at 10 K. These processes are of vital importance in initiating a chain of chemical reactions leading to complex organics-some of which are responsible for the flavors of chocolate-not only in the interstellar medium, but also on comet 67P/Churyumov-Gerasimenko.

Photofragmentation spectra of halogenated methanes in the VUV photon energy range.

In this paper an investigation of the photofragmentation of dihalomethanes CH2X2 (X = F, Cl, Br, I) and chlorinated methanes (CH(n)Cl(4-n) with n = 0-3) with VUV helium, neon, and argon discharge lamps is reported and the role played by the different halogen atoms is discussed. Halogenated methanes are a class of molecules used in several fields of chemistry and the study of their physical and chemical proprieties is of fundamental interest. In particular their photodissociation and photoionization are of great importance since the decomposition of these compounds in the atmosphere strongly affects the environment. The results of the present work show that the halogen-loss is the predominant fragmentation channel for these molecules in the VUV photon energy range and confirm their role as reservoir of chlorine, bromine, and iodine atoms in the atmosphere. Moreover, the results highlight the peculiar feature of CH2F2 as a source of both fluorine and hydrogen atoms and the characteristic formation of I2(+) and CH2(+) ions from the photofragmentation of the CH2I2 molecule.

Operation of a cylindrical bioelectrochemical reactor containing carbon fiber fabric for efficient methane fermentation from thickened sewage sludge.

A bioelectrochemical reactor (BER) containing carbon fiber fabric (CFF) (BER+CFF) enabled efficient methane fermentation from thickened sewage sludge. A cylindrical BER+CFF was proposed and scaled-up to a volume of 4.0-L. Thickened sewage sludge was treated using three types of methanogenic reactors. The working electrode potential in the BER+CFF was regulated at -0.8 V (vs. Ag/AgCl). BER+CFF showed gas production of 3.57 L L(-1) day(-1) at a hydraulic retention time (HRT) of 4.0 days; however, non-BER+CFF showed a lower gas production rate (0.83 L L(-1) day(-1)) at this HRT, suggesting positive effects of electrochemical regulation. A stirred tank reactor (without CFF) deteriorated at an HRT of 10 days, suggesting positive effects of CFF. 16S rRNA gene analysis showed that the BER+CFF included 3 kinds of hydrogenotrophic methanogens and 1 aceticlastic methanogen. These results demonstrate the effectiveness of the BER+CFF for scale-up and flexibility of this technology.

Ultraviolet-radiation-induced methane emissions from meteorites and the Martian atmosphere.

Almost a decade after methane was first reported in the atmosphere of Mars there is an intensive discussion about both the reliability of the observations--particularly the suggested seasonal and latitudinal variations--and the sources of methane on Mars. Given that the lifetime of methane in the Martian atmosphere is limited, a process on or below the planet's surface would need to be continuously producing methane. A biological source would provide support for the potential existence of life on Mars, whereas a chemical origin would imply that there are unexpected geological processes. Methane release from carbonaceous meteorites associated with ablation during atmospheric entry is considered negligible. Here we show that methane is produced in much larger quantities from the Murchison meteorite (a type CM2 carbonaceous chondrite) when exposed to ultraviolet radiation under conditions similar to those expected at the Martian surface. Meteorites containing several per cent of intact organic matter reach the Martian surface at high rates, and our experiments suggest that a significant fraction of the organic matter accessible to ultraviolet radiation is converted to methane. Ultraviolet-radiation-induced methane formation from meteorites could explain a substantial fraction of the most recently estimated atmospheric methane mixing ratios. Stable hydrogen isotope analysis unambiguously confirms that the methane released from Murchison is of extraterrestrial origin. The stable carbon isotope composition, in contrast, is similar to that of terrestrial microbial origin; hence, measurements of this signature in future Mars missions may not enable an unambiguous identification of biogenic methane.

Enhanced biogas production from anaerobic codigestion of solid waste by sonolysis.

This paper examines the effectiveness of sonolysis in improving the anaerobic biodegradability of the organic fraction of municipal solid waste coming from mechanical selection, thus enhancing biogas production and energy recovery as well. Methane yield of solid organic material anaerobic digestion is significantly affected by substrate availability that was evaluated, in this investigation, through organic matter solubilisation tests carried out at different conditions of ultrasound treatment. Results show that sonolysis can significantly improve the solubilisation of organic solid waste, thus allowing higher biogas production from anaerobic treatment of sonicated substrates. After 45 days, the biogas produced during anaerobic codigestion tests for the sonicated mixture was 24% higher than untreated one. Therefore, these results can lay the basis for the development of technologies useful to produce high biogas quantities, in order to improve clean energy generation from biowaste.

Direct measurement of methyl radicals in a methane/air flame at atmospheric pressure by radar REMPI.

We report the direct measurements of methyl radicals (CH(3)) in methane/air flames at atmospheric pressure by using coherent microwave Rayleigh scattering (Radar) from Resonance Enhanced Multi-Photon Ionization (REMPI), also known as the Radar REMPI technique. A tunable dye laser was used to selectively induce the (2 + 1) REMPI ionization of methyl radicals (CH(3), 3p(2)A(2)('')0(0)(0) band) in a near adiabatic and premixed laminar methane/air flame, generated by a Hencken burner. In situ measurements of the REMPI electrons were made by non-intrusively using a microwave homodyne transceiver detection system. The REMPI spectrum of the CH(3) radical was obtained and a spatial distribution of the radicals limited by focused laser beam geometry, approximately 20 µm normal to the flame front and 2.4 mm parallel to the flame, was determined. The measured CH(3) was in good agreement with numerical simulations performed using the detailed kinetic mechanism of GRI-3.0. To the authors' knowledge, these experiments represent the first directly-measured spatially-resolved CH(3) in a flame at atmospheric pressure.

Molecular high harmonic generation in a two-color field.

We experimentally investigate the high harmonic generation (HHG) from CH4 molecules and Xe atoms in a two-color field (using the 800 nm laser and the tunable laser with the longer wavelength from 1500 nm to 1900 nm), and observe that the longer wavelength component can destructively suppress the HHG from CH4 molecules. By controlling the time delay between the two color laser pulses or tuning the laser intensity of the longer wavelength component, the suppressions of the HHG from CH4 molecules and the enhancements of the HHG from Xe atoms at the same laser condition are observed. The results indicate that the longer wavelength component around the molecular infrared absorption can suppress the molecular HHG process.

Photochemical generation, intramolecular reactions, and spectroscopic detection of oxonium ylide and carbene intermediates in a crystalline ortho-(1,3-dioxolan-2-yl)-diaryldiazomethane.

Photochemical excitation of a diaryldiazomethane with an ortho-acetal both in solution and in crystals led to products that originate from the expected diarylcarbene and form an intramolecular oxonium ylide. While crystals strongly favored the formation of a benzocyclobutane by intramolecular hydrogen abstraction in the triplet carbene, reactions in benzene led exclusively to products that derive from the oxonium ylide. Studies in methyl cyclohexane glasses and in mixed crystals at 77 K led to the spectroscopic detection of triplet carbene (3)C, which partially transformed into a new species that we assign as the sought-after oxonium ylide Y. The formation of a formally ionic intermediate suggests that the scope of reactions by reactive intermediates in crystalline solids may be broader than it is generally assumed.

Computational and experimental tools in solving some mechanistic problems in the chemistry of Fischer carbene complexes.

Well-established bonding situations of organometallic complexes and extensive applications in synthesis have been achieved during the past 25 years. In contrast, very little attention has been devoted to the intimate understanding of their reaction mechanisms. In this feature article, we show how the combined use of experimental and computational tools can be used to explore some reaction mechanisms of Fischer-type carbene complexes. The results obtained clearly demonstrate the usefulness of these combined tools to unravel the intimacies of different thermal and photochemical transformations, not only to explain already known processes but to predict new reactivity involving these fascinating complexes.

Diffuse-light two-dimensional line-of-sight attenuation for soot concentration measurements.

A technique of diffuse-light two-dimensional line-of-sight attenuation (diffuse 2D-LOSA) is described and demonstrated that achieves very high levels of sensitivity in transmissivity measurements (optical thicknesses down to 0.001) while effectively mitigating interferences due to beam steering. An optical system is described in which an arc lamp coupled with an integrating sphere is used as a source of diffuse light that is imaged to the center of the particulate laden medium. The center of the medium is then imaged onto a CCD detector with 1:1 magnification. Comparative measurements with collimated 2D-LOSA in nonpremixed flames demonstrate the accuracy and improved optical noise rejection of the technique. Tests in weakly sooting, nonpremixed methane-air flames, and in high pressure methane-air flames, reveal the excellent sensitivity of diffuse 2D-LOSA, which is primarily limited by the shot noise of the lamp and CCD detector.

What have we learnt about heavy carbenes through laser flash photolysis studies?

Time resolved gas-phase kinetic studies have contributed a great deal of fundamental information about the reactions and reactivity of heavy carbenes (silylenes, germylenes and stannylenes) during the past two decades. In this article we trace the development of our understanding through the mechanistic themes of intermediate complexes, third body assisted associations, catalysed reactions, non-observed reactions and substituent effects. Ab initio (quantum chemical) calculations have substantially assisted mechanistic interpretation and are discussed where appropriate. Trends in reactivity are identified and some signposts to future studies are indicated. This review, although detailed, is not comprehensive.

Biomarker response to galactic cosmic ray-induced NOx and the methane greenhouse effect in the atmosphere of an Earth-like planet orbiting an M dwarf star.

Planets orbiting in the habitable zone of M dwarf stars are subject to high levels of galactic cosmic rays (GCRs), which produce nitrogen oxides (NOx) in Earth-like atmospheres. We investigate to what extent these NO(Mx) species may modify biomarker compounds such as ozone (O3) and nitrous oxide (N2O), as well as related compounds such as water (H2O) (essential for life) and methane (CH4) (which has both abiotic and biotic sources). Our model results suggest that such signals are robust, changing in the M star world atmospheric column due to GCR NOx effects by up to 20% compared to an M star run without GCR effects, and can therefore survive at least the effects of GCRs. We have not, however, investigated stellar cosmic rays here. CH4 levels are about 10 times higher on M star worlds than on Earth because of a lowering in hydroxyl (OH) in response to changes in the ultraviolet. The higher levels of CH4 are less than reported in previous studies. This difference arose partly because we used different biogenic input. For example, we employed 23% lower CH4 fluxes compared to those studies. Unlike on Earth, relatively modest changes in these fluxes can lead to larger changes in the concentrations of biomarker and related species on the M star world. We calculate a CH4 greenhouse heating effect of up to 4K. O3 photochemistry in terms of the smog mechanism and the catalytic loss cycles on the M star world differs considerably compared with that of Earth.

Removal of NO in NO/N2, NO/N2/O2, NO/CH4/N2, and NO/CH4/O2/N2 systems by flowing microwave discharges.

In this paper, continuing previous work, we report on experiments carried out to investigate the removal of NO from simulated flue gas in nonthermal plasmas. The plasma-induced decomposition of small concentrations of NO in N2 used as the carrier gas and O2 and CH4 as minority components has been studied in a surface wave discharge induced with a surfatron launcher. The reaction products and efficiency have been monitored by mass spectrometry as a function of the composition of the mixture. NO is effectively decomposed into N2 and O2 even in the presence of O2, provided always that enough CH4 is also present in the mixture. Other majority products of the plasma reactions under these conditions are NH3, CO, and H2. In the absence of O2, decomposition of NO also occurs, although in that case HCN accompanies the other reaction products as a majority component. The plasma for the different reaction mixtures has been characterized by optical emission spectroscopy. Intermediate excited species of NO*, C*, CN*, NH*, and CH* have been monitored depending on the gas mixture. The type of species detected and their evolution with the gas composition are in agreement with the reaction products detected in each case. The observations by mass spectrometry and optical emission spectroscopy are in agreement with the kinetic reaction models available in literature for simple plasma reactions in simple reaction mixtures.

Direct VUV photolysis of chlorinated methanes and their mixtures in a nitrogen stream.

The gas-phase decomposition of CCl(4), CHCl(3) and CH(2)Cl(2) and their binary mixtures was studied in a flow-type reactor in a nitrogen gas stream, using a low-pressure mercury vapour lamp covered with a high-purity silica quartz sleeve. The 184.9 nm vacuum-ultraviolet (VUV) light emitted is able to rupture the C-Cl bond in these target substances. For H-containing compounds, the decomposition takes place not only by direct photolysis, but also by H abstraction by .Cl formed during the direct photolysis of the target substances. The relative contributions of direct photolysis and .Cl-sensitized reactions to the decomposition were estimated at different initial concentrations. The addition of CCl(4) to CHCl(3) or CH(2)Cl(2) increased their decomposition rates via increase of the .Cl concentration, whereas the addition of CH(2)Cl(2) to CHCl(3) decreased its degradation rate, suggesting that CH(2)Cl(2) acts as a .Cl radical scavenger. The variation of the product distribution confirms the effect of the composition of the irradiated gas mixtures on the relative contributions of .Cl-sensitized reactions and direct photolysis.

Methane activation by laser-ablated V, Nb, and Ta atoms: Formation of CH3-MH, CH2=MH2, CHMH3-, and (CH3)2MH2.

Methane activation by group 5 transition-metal atoms in excess argon and the matrix infrared spectra of reaction products have been investigated. Vanadium forms only the monohydrido methyl complex (CH3-VH) in reaction with CH4 and upon irradiation. On the other hand, the heavier metals form methyl hydride and methylidene dihydride complexes (CH3-MH and CH2=MH2) along with the methylidyne trihydride anion complexes (CHMH3-). The neutral products, particularly the methylidene complex, increase markedly on irradiation whereas the anionic product depletes upon UV irradiation or addition of a trace of CCl4 or CBr4 to trap electrons. Other absorptions that emerge on irradiation and annealing increase markedly at higher precursor concentration and are attributed to a higher-order product ((CH3)2MH2)). Spectroscopic evidence suggests that the agostic Nb and Ta methylidene dihydride complexes have two identical metal-hydrogen bonds.

An efficient and practical synthesis of bis(indolyl)methanes catalyzed by aminosulfonic acid under ultrasound.

Synthesis of bis(indolyl)methanes via electrophilic substitution reactions of indoles with aromatic aldehydes and ketones catalyzed by aminosulfonic acid was carried out in 23-96% yield at 30-38 degrees C in EtOH aqueous solution under ultrasound irradiation.

Time-resolved kinetic studies on quenching of HCF(A1A'') by alkane and alcohol molecules.

HCF(X1A') radicals were produced by laser photolysis of CHFBr2 at 213 nm and were electronically excited from the ground state to A1A''(030) at 492.7 nm with a dye laser pumped by a Nd:YAG laser. With the analysis of the lifetime of the time-resolved total fluorescence signals collected in the reaction cell where the total pressure was fixed to be 14.0 Torr, the quenching data of HCF(A1A'') by alkane and alcohol molecules at room temperature were derived from variation of pseudo-first-order rate constant with different quencher pressures. It is found that the quenching rate constants are close to the collision rate constants (10(-10) cm3 molecule(-1) s(-1)), indicating the long-range attractive forces between the collision partners play an important role in the entrance channel of quenching process. Several kinetic models were applied to analyze the mechanism of the quenching process. The complex formation cross sections are calculated with the collision complex model. Correlations of the quenching rate constant for the removal of the HCF(A1A'') state with ionization potential of the quenching partners show that the insertion reactive mechanism is probably the dominant reaction channel, which is analogous to the behaviors of other three-atom carbenes in corresponding electronic states.

Matrix isolation infrared spectroscopic and theoretical studies on the reactions of niobium and tantalum mono- and dioxides with methane.

The reactions of niobium and tantalum monoxides and dioxides with methane have been investigated using matrix isolation infrared spectroscopic and theoretical calculations. The niobium and tantalum oxide molecules were prepared by laser evaporation of Nb(2)O(5) and Ta(2)O(5) bulk targets. The niobium monoxide molecule interacted with methane to form the ONb(CH(4)) complex, which was predicted to have C(3)(v)() symmetry with the metal atom coordinated to three hydrogen atoms of the methane molecule. The ONb(CH(4)) complex rearranged to the CH(3)Nb(O)H isomer upon 300 nm < lambda < 580 nm irradiation. The analogous OTa(CH(4)) complex was not observed, but the CH(3)Ta(O)H molecule was produced upon UV irradiation. The niobium and tantalum dioxide molecules reacted with methane to form the O(2)Nb(CH(4)) and O(2)Ta(CH(4)) complexes with C(s)() symmetry, which underwent photochemical rearrangement to the CH(3)Nb(O)OH and CH(3)Ta(O)OH isomers upon ultraviolet irradiation.