RÉSUMÉ
The active site of the nitrogen-fixing enzyme Mo-nitrogenase is the M cluster ([MoFe7 S9 Câ R-homocitrate]), also known as the FeMo cofactor or FeMoco. The biosynthesis of this highly complex metallocluster involves a series of proteins. Among them, NifB, a radical-SAM enzyme, is instrumental in the assembly of the L cluster ([Fe8 S9 C]), a precursor and all-iron core of the M cluster. In the absence of sulfite, NifB assembles a precursor form of the L cluster called the L* cluster ([Fe8 S8 C]), which lacks the final ninth sulfur. EPR and MCD spectroscopies are used to probe the electronic structures of the paramagnetic, oxidized forms of both the L and L* clusters, labeled LOx and [L*]Ox . This study shows that both LOx and [L*]Ox have nearly identical EPR and MCD spectra, thus suggesting that the two clusters have identical structures upon oxidation; in other words, a sulfur migrates away from LOx following oxidation, thereby rendering the cluster identical to [L*]Ox . It is proposed that a similar migration could occur to the M cluster upon oxidation, and that this is an instrumental part of both M cluster formation and nitrogenase substrate/inhibitor binding.
Sujet(s)
Électrons , Composés du fer/métabolisme , Soufre/métabolisme , Sites de fixation/effets des médicaments et des substances chimiques , Dichroïsme circulaire , Spectroscopie de résonance de spin électronique , Antienzymes/composition chimique , Antienzymes/pharmacologie , Composés du fer/composition chimique , Phénomènes magnétiques , Methanosarcina/composition chimique , Nitrogenase/antagonistes et inhibiteurs , Nitrogenase/composition chimique , Nitrogenase/métabolisme , Oxydoréduction , Spécificité du substrat , Soufre/composition chimiqueRÉSUMÉ
The properties of CO-inhibited Azotobacter vinelandii (Av) Mo-nitrogenase (N2ase) have been examined by the combined application of nuclear resonance vibrational spectroscopy (NRVS), extended X-ray absorption fine structure (EXAFS), and density functional theory (DFT). Dramatic changes in the NRVS are seen under high-CO conditions, especially in a 188 cm(-1) mode associated with symmetric breathing of the central cage of the FeMo-cofactor. Similar changes are reproduced with the α-H195Q N2ase variant. In the frequency region above 450 cm(-1), additional features are seen that are assigned to Fe-CO bending and stretching modes (confirmed by (13)CO isotope shifts). The EXAFS for wild-type N2ase shows evidence for a significant cluster distortion under high-CO conditions, most dramatically in the splitting of the interaction between Mo and the shell of Fe atoms originally at 5.08 Å in the resting enzyme. A DFT model with both a terminal -CO and a partially reduced -CHO ligand bound to adjacent Fe sites is consistent with both earlier FT-IR experiments, and the present EXAFS and NRVS observations for the wild-type enzyme. Another DFT model with two terminal CO ligands on the adjacent Fe atoms yields Fe-CO bands consistent with the α-H195Q variant NRVS. The calculations also shed light on the vibrational "shake" modes of the interstitial atom inside the central cage, and their interaction with the Fe-CO modes. Implications for the CO and N2 reactivity of N2ase are discussed.
Sujet(s)
Monoxyde de carbone/composition chimique , Monoxyde de carbone/pharmacologie , Antienzymes/composition chimique , Antienzymes/pharmacologie , Nitrogenase/antagonistes et inhibiteurs , Nitrogenase/métabolisme , Théorie quantique , Azotobacter vinelandii/enzymologie , Monoxyde de carbone/métabolisme , Antienzymes/métabolisme , Spectroscopie par résonance magnétique , Modèles moléculaires , Molybdoferrédoxine/métabolisme , Mutation , Nitrogenase/composition chimique , Nitrogenase/génétique , Conformation des protéines , Spectroscopie infrarouge à transformée de Fourier , Spectroscopie d'absorption XRÉSUMÉ
Proton uptake accompanies the reduction of all known substrates by nitrogenase. As a consequence, a higher pH should limit the availability of protons as a substrate essential for turnover, thereby increasing the proportion of more highly reduced forms of the enzyme for further study. The utility of the high-pH approach would appear to be problematic in view of the observation reported by Pham and Burgess [(1993) Biochemistry 32, 13725-13731] that the MoFe-protein undergoes irreversible protein denaturation above pH 8.65. In contrast, we found by both enzyme activity and crystallographic analyses that the MoFe-protein is stable when incubated at pH 9.5. We did observe, however, that at higher pHs and under turnover conditions, the MoFe-protein is slowly inactivated. While a normal, albeit low, level of substrate reduction occurs under these conditions, the MoFe-protein undergoes a complex transformation; initially, the enzyme is reversibly inhibited for substrate reduction at pH 9.5, yet in a second, slower process, the MoFe-protein becomes irreversibly inactivated as measured by substrate reduction activity at the optimal pH of 7.8. The final inactivated MoFe-protein has an increased hydrodynamic radius compared to that of the native MoFe-protein, yet it has a full complement of iron and molybdenum. Significantly, the modified MoFe-protein retains the ability to specifically interact with its nitrogenase partner, the Fe-protein, as judged by the support of ATP hydrolysis and by formation of a tight complex with the Fe-protein in the presence of ATP and aluminum fluoride. The turnover-dependent inactivation coupled to conformational change suggests a mechanism-based transformation that may provide a new probe of nitrogenase catalysis.
Sujet(s)
Molybdoferrédoxine/antagonistes et inhibiteurs , Molybdoferrédoxine/métabolisme , Nitrogenase/antagonistes et inhibiteurs , Nitrogenase/métabolisme , Adénosine triphosphate/métabolisme , Azotobacter vinelandii/composition chimique , Cristallographie aux rayons X , Concentration en ions d'hydrogène , Hydrolyse , Modèles moléculaires , Molybdoferrédoxine/composition chimique , Nitrogenase/composition chimique , Facteurs tempsRÉSUMÉ
The inhibition of competitive metabolic pathways by various inhibitors in order to redirect electron flow towards nitrogenase and bidirectional Hox-hydrogenase was investigated in Anabaena siamensis TISTR 8012. Cells grown in BG11(0) supplemented with KCN, rotenone, DCMU, and DL-glyceraldehyde under light condition for 24 h showed enhanced H(2) production. Cells grown in BG11 medium showed only marginal H(2) production and its production was hardly increased by the inhibitors tested. H(2) production with either 20mM KCN or 50 µM DCMU in BG11(0) medium was 22 µmol H(2) mg chl a(-1) h(-1), threefold higher than the control. The increased H(2) production caused by inhibitors was consistent with the increase in the respective Hox-hydrogenase activities and nifD transcript levels, as well as the decrease in hupL transcript levels. The results suggested that interruption of metabolic pathways essential for growth could redirect electrons flow towards nitrogenase and bidirectional Hox-hydrogenase resulting in increased H(2) production.
Sujet(s)
Anabaena/enzymologie , Électrons , Hydrogène/métabolisme , Hydrogenase/antagonistes et inhibiteurs , Hydrogenase/métabolisme , Nitrogenase/antagonistes et inhibiteurs , Nitrogenase/métabolisme , Anabaena/effets des médicaments et des substances chimiques , Anabaena/génétique , Anabaena/effets des radiations , Antienzymes/pharmacologie , Régulation de l'expression des gènes bactériens/effets des médicaments et des substances chimiques , Régulation de l'expression des gènes bactériens/effets des radiations , Hydrogenase/génétique , Lumière , Modèles biologiques , Fixation de l'azote/effets des médicaments et des substances chimiques , Fixation de l'azote/effets des radiations , Nitrogenase/génétique , Complexe protéique du photosystème II/métabolisme , ARN messager/génétique , ARN messager/métabolisme , RT-PCRRÉSUMÉ
The experimental enhancement of UV-B radiation resulted in damage to chlorophyll-a in Spirulina platensis 794, and the degree of this damage was modified by chemical treatments. The addition of 0.5 mM sodium nitroprusside (SNP), a donor of nitric oxide (NO), to cultures of Spirulina platensis 794 could markedly alleviate the damage to chlorophyll-a caused by enhanced ultraviolet-B radiation. Exposure of N(2)-fixing cyanobacterium Spirulina platensis 794 to enhanced ultraviolet-B radiation resulted in an intensity-dependent inhibition of nitrogenase activity. In cultured cells that were treated with 0.5 mM SNP and enhanced UV-B for 6 h, nitrogenase activity increased by 47.3% compared with UV-B treated control cells. SNP apparently counteracted the decrease in nitrogenase activity caused by UV-B stress. NAC (a free radical scavenger) significantly increased nitrogenase activity, but PTIO (a nitric oxide scavenger) decreased nitrogenase activity in UV-B treated S. platensis 794. Thus, the free radical scavenger NAC and NO may counteract the effects of enhanced UV-B radiation. The activity of UV-B-inhibited nitrogenase did not recover upon transfer of exposed cells to fluorescent light, suggesting that the inhibition may be due to specific inactivation of the enzyme. By experimentally manipulating the inhibitors of photosystem-II activity, it was demonstrated that nitrogenase activity in cyanobacterium S. platensis 794 is limited by the amount of reductant and ATP. This result further confirmed that nitrogenase activity requires a continued and abundant supply of suitable reductant and ATP for conversion of N(2) to NH(3). The effects of UV-B treatment on nitratase activity were also examined, and enhanced UV-B radiation increased nitratase activity. In addition, enhanced UV-B in combination with SNP and NAC resulted in significant increases in the activity of nitratase.
Sujet(s)
Protéines bactériennes/antagonistes et inhibiteurs , Régulation négative/effets des médicaments et des substances chimiques , Monoxyde d'azote/pharmacologie , Nitrogenase/antagonistes et inhibiteurs , Spirulina/effets des médicaments et des substances chimiques , Spirulina/effets des radiations , Protéines bactériennes/métabolisme , Chlorophylle/métabolisme , Nitrogenase/métabolisme , Nitroprussiate/pharmacologie , Spirulina/enzymologie , Spirulina/métabolisme , Rayons ultravioletsRÉSUMÉ
Nitrogenase activity, as acetylene-reduction activity (ARA), in Lotus root nodules was clearly inhibited 27h after the addition of nitrate. Nitric oxide (NO) production was detected at that time in nitrate-supplied root nodules using the NO-reactive fluorescent probe diaminofluorescein-2 diacetate. The involvement of NO production in the inhibition of nitrogenase activity by nitrate was investigated using the NO donor sodium nitroprusside (SNP) and the NO scavenger 2-(4-carboxyphenyl)-4,4,5,5-tetramethylimidazoline-1-oxyl-3-oxide (c-PTIO). SNP inhibited ARA at 1mM, and c-PTIO suppressed the inhibition of ARA by nitrate. These results suggest that NO is involved in the inhibition of nitrogenase activity by nitrate in Lotus root nodules.
Sujet(s)
Loteae/métabolisme , Nitrates/métabolisme , Monoxyde d'azote/métabolisme , Nitrogenase/métabolisme , Nodules racinaires de plante/métabolisme , Nitrogenase/antagonistes et inhibiteursRÉSUMÉ
Posttranslational regulation of nitrogenase, or switch-off, in the methanogenic archaeon Methanococcus maripaludis requires both nifI(1) and nifI(2), which encode members of the PII family of nitrogen-regulatory proteins. Previous work demonstrated that nitrogenase activity in cell extracts was inhibited in the presence of NifI(1) and NifI(2), and that 2-oxoglutarate (2OG), a potential signal of nitrogen limitation, relieved this inhibition. To further explore the role of the NifI proteins in switch-off, we found proteins that interact with NifI(1) and NifI(2) and determined whether 2OG affected these interactions. Anaerobic purification of His-tagged NifI(2) resulted in copurification of NifI(1) and the dinitrogenase subunits NifD and NifK, and 2OG or a deletion mutation affecting the T-loop of NifI(2) prevented copurification of dinitrogenase but did not affect copurification of NifI(1). Similar results were obtained with His-tagged NifI(1). Gel-filtration chromatography demonstrated an interaction between purified NifI(1,2) and dinitrogenase that was inhibited by 2OG. The NifI proteins themselves formed a complex of approximately 85 kDa, which appeared to further oligomerize in the presence of 2OG. NifI(1,2) inhibited activity of purified nitrogenase when present in a 1:1 molar ratio to dinitrogenase, and 2OG fully relieved this inhibition. These results suggest a model for switch-off of nitrogenase activity, where direct interaction of a NifI(1,2) complex with dinitrogenase causes inhibition, which is relieved by 2OG. The presence of nifI(1) and nifI(2) in the nif operons of all nitrogen-fixing Archaea and some anaerobic Bacteria suggests that this mode of nitrogenase regulation may operate in a wide variety of diazotrophs.
Sujet(s)
Protéines d'archée/métabolisme , Acides cétoglutariques/pharmacologie , Methanococcus/enzymologie , Nitrogenase/effets des médicaments et des substances chimiques , Nitrogenase/métabolisme , Azote/métabolisme , Nitrogenase/antagonistes et inhibiteurs , Liaison aux protéines , Sous-unités de protéines/métabolismeRÉSUMÉ
The molybdenum nitrogenase enzyme system, comprised of the MoFe protein and the Fe protein, catalyzes the reduction of atmospheric N(2) to NH(3). Interactions between these two proteins and between Fe protein and nucleotides (MgADP and MgATP) are crucial to catalysis. It is well established that salts are inhibitors of nitrogenase catalysis that target these interactions. However, the implications of salt effects are often overlooked. We have reexamined salt effects in light of a comprehensive framework for nitrogenase interactions to offer an in-depth analysis of the sources of salt inhibition and underlying apparent cooperativity. More importantly, we have identified patterns of salt activation of nitrogenase that correspond to at least two mechanisms. One of these mechanisms is that charge screening of MoFe protein-Fe protein interactions in the nitrogenase complex accelerates the rate of nitrogenase complex dissociation, which is the rate-limiting step of catalysis. This kind of salt activation operates under conditions of high catalytic activity and low salt concentrations that may resemble those found in vivo. While simple kinetic arguments are strong evidence for this kind of salt activation, further confirmation was sought by demonstrating that tight complexes that have previously displayed little or no activity due to the inability of Fe protein to dissociate from the complex are activated by the presence of salt. This occurs for the combination Azotobacter vinelandii MoFe protein with: (a) the L127Delta Fe protein; and (b) Clostridium pasteurianum Fe protein. The curvature of activation vs. salt implies a synergistic salt-protein interaction.
Sujet(s)
Clostridium/enzymologie , Molybdoferrédoxine/métabolisme , Nitrogenase/antagonistes et inhibiteurs , Nitrogenase/métabolisme , Sels/pharmacologie , Sites de fixation , Catalyse , Relation dose-effet des médicaments , Interactions médicamenteuses , Cinétique , Molybdoferrédoxine/composition chimique , Nitrogenase/composition chimique , Chlorure de sodium/pharmacologieRÉSUMÉ
A major challenge in understanding the mechanism of nitrogenase, the enzyme responsible for the biological fixation of N(2) to two ammonias, is to trap a nitrogenous substrate at the enzyme active site in a state that is amenable to further characterization. In the present work, a strategy is described that results in the trapping of the substrate hydrazine (H(2)N-NH(2)) as an adduct bound to the active site metal cluster of nitrogenase, and this bound adduct is characterized by EPR and ENDOR spectroscopies. Earlier work has been interpreted to indicate that nitrogenous (e.g., N(2) and hydrazine) as well as alkyne (e.g., acetylene) substrates can bind at a common FeS face of the FeMo-cofactor composed of Fe atoms 2, 3, 6, and 7. Substitution of alpha-70(Val) that resides over this FeS face by the smaller amino acid alanine was also previously shown to improve the affinity and reduction rate for hydrazine. We now show that when alpha-195(His), a putative proton donor near the active site, is substituted by glutamine in combination with substitution of alpha-70(Val) by alanine, and the resulting doubly substituted MoFe protein (alpha-70(Ala)/alpha-195(Gln)) is turned over with hydrazine as substrate, the FeMo-cofactor can be freeze-trapped in a S = (1)/(2) state in high yield ( approximately 70%). The presumed hydrazine-FeMo-cofactor adduct displays a rhombic EPR signal with g = [2.09, 2.01, 1.93]. The optimal pH for the population of this state was found to be 7.4. The EPR signal showed a Curie law temperature dependence similar to the resting state EPR signal. Mims pulsed ENDOR spectroscopy at 35 GHz using (15)N-labeled hydrazine reveals that the trapped intermediate incorporates a hydrazine-derived species bound to the FeMo-cofactor; in spectra taken at g(1) this species gives a single observed (15)N signal, A(g(1)) = 1.5 MHz.
Sujet(s)
Hydrazines/composition chimique , Nitrogenase/composition chimique , Nitrogenase/métabolisme , Azotobacter vinelandii/enzymologie , Sites de fixation , Spectroscopie de résonance de spin électronique/méthodes , Antienzymes/composition chimique , Molybdoferrédoxine/composition chimique , Molybdoferrédoxine/métabolisme , Azote/composition chimique , Azote/métabolisme , Nitrogenase/antagonistes et inhibiteurs , Oxydoréduction , Protons , Spécificité du substratRÉSUMÉ
The interactions of acetylene with its binding site(s) on the FeMo cofactor of the MoFe protein of Azotobacter vinelandii nitrogenase were probed using C(2)D(2). Specifically, the effects of changing the C(2)D(2) concentration, electron flux, pH, or the individual presence of N(2), ethylene, or CO on the formation of both cis- and trans-1,2-ethylene-d(2) from C(2)D(2) were measured. A hypothesis, involving two acetylene-reduction sites, was developed to explain the changes observed in the stereoselective protonation during both substrate-concentration-dependent and electron-flux-dependent C(2)D(2) reduction. One of these sites is a higher-affinity acetylene-binding site that produces only cis-1,2-ethylene-d(2) from C(2)D(2). The other is a lower-affinity acetylene-binding site, which produces both cis- and trans-1,2-ethylene-d(2). Added N(2) specifically inhibited the production of cis-1,2-ethylene-d(2) from C(2)D(2), which indicates that N(2) binds to (and is reduced at) the higher-affinity acetylene-binding site. High concentrations of added ethylene behaved like very high concentrations of acetylene and inhibited both the electron flux flowing through the enzyme and cis-isomer formation. Added CO, at very low concentrations, did not affect the relative distribution of cis- and trans-isomers, indicating a separate CO-binding site. The results of pH-dependence experiments showed that substrate inhibition at high C(2)D(2) concentrations is enhanced under acidic conditions but is absent under basic conditions and suggest that a low proton flux has a similar impact to that of a low electron flux; both inhibit cis-1,2-ethylene-d(2) formation selectively. Apparently, the factors affecting stereoselective protonation during C(2)D(2) reduction could be the same as those that perturb protonation of the FeMo cofactor when acetylene is reduced. The observed nitrogenase-catalyzed production of ethylene-d(1) from C(2)D(2) implicates a reversible protonation step in the mechanistic pathway.
Sujet(s)
Acétylène/composition chimique , Azotobacter vinelandii/enzymologie , Nitrogenase/composition chimique , Protons , Sites de fixation , Monoxyde de carbone/composition chimique , Catalyse , Électrons , Antienzymes/composition chimique , Éthylènes/biosynthèse , Éthylènes/composition chimique , Concentration en ions d'hydrogène , Modèles chimiques , Molybdoferrédoxine/composition chimique , Azote/composition chimique , Nitrogenase/antagonistes et inhibiteurs , Oxydoréduction , Stéréoisomérie , Spécificité du substratRÉSUMÉ
Biological nitrogen reduction is catalyzed by a complex two-component metalloenzyme called nitrogenase. For the Mo-dependent enzyme, the site of substrate reduction is provided by a [7Fe-9S-Mo-X-homocitrate] metallocluster, where X is proposed to be an N atom. Recent progress with organometallic model compounds, theoretical calculations, and biochemical, kinetic, and biophysical studies on nitrogenase has led to the formulation of two opposing models of where N(2) or alternative substrates might bind during catalysis. One model involves substrate binding to the Mo atom, whereas the other model involves the participation of one or more Fe atoms located in the central region of the metallocluster. Recently gathered evidence that has provided the basis for both models is summarized, and a perspective on future research in resolving this fundamental mechanistic question is presented.
Sujet(s)
Protéines bactériennes/composition chimique , Protéines bactériennes/métabolisme , Fer/composition chimique , Molybdène/composition chimique , Nitrogenase/composition chimique , Nitrogenase/métabolisme , Protéines bactériennes/antagonistes et inhibiteurs , Fixation compétitive , Antienzymes/composition chimique , Antienzymes/métabolisme , Fer/métabolisme , Modèles chimiques , Molybdène/métabolisme , Molybdoferrédoxine/composition chimique , Molybdoferrédoxine/métabolisme , Nitrogenase/antagonistes et inhibiteurs , Spécificité du substratRÉSUMÉ
Exposure of the N(2)-fixing cyanobacterium Anabaena BT2 to ultraviolet-B radiation (2.5 W m(-2)) for 30 min resulted in complete loss of nitrogenase activity but 100% cell killing occurred only after a 90-min exposure. Inactivation of nitrogenase activity was not specific to Anabaena BT2; other species also showed a similar effect. The time required for 100% killing and inactivation of nitrogenase activity differed in various species, and this difference may be ascribed to the presence of different levels of UV-B protection mechanisms in individual species. Inhibition of nitrogenase activity was immediate, since exposure of cultures to UV-B for as little as 5 min elicited some inhibition of activity. The activity of UV-B-inhibited nitrogenase did not recover upon transfer of exposed cells to fluorescent light, suggesting that the inhibition may be due to specific inactivation of the enzyme. By employment of inhibitors of protein synthesis and PS-II activity, it was demonstrated that restoration of nitrogenase activity in a UV-B-treated culture occurred by fresh synthesis of nitrogenase polypeptide. Our findings suggest that estimation of nitrogenase activity in diazotrophic species may be used as a marker enzyme for assessing the impact of UV-B radiation.
Sujet(s)
Anabaena/effets des radiations , Cyanobactéries/effets des radiations , Nitrogenase/antagonistes et inhibiteurs , Nitrogenase/effets des radiations , Rayons ultraviolets/effets indésirables , Anabaena/enzymologie , Anabaena/croissance et développement , Milieux de culture , Cyanobactéries/enzymologie , Cyanobactéries/croissance et développementRÉSUMÉ
Anabaena variabilis ATCC 29413 belongs to the cyanobacteria that use a specific cell type, heterocysts, for fixation of atmospheric nitrogen under aerobic conditions. Nitrogen fixation under anaerobic conditions is catalyzed by a Mo-dependent nitrogenase (Nif2) that is expressed in the vegetative cells. We demonstrate here using immunolocalization/light microscopy (LM) that the synthesis of NifH2 is mainly initiated in dividing vegetative cells along the trichomes. Blocking cell division by cephalexin abolished nitrogenase synthesis under anaerobic conditions.
Sujet(s)
Anabaena/cytologie , Anabaena/effets des médicaments et des substances chimiques , Antibactériens/pharmacologie , Céfalexine/pharmacologie , Nitrogenase/antagonistes et inhibiteurs , Acétylène/métabolisme , Anabaena/enzymologie , Anaérobiose , Division cellulaire/effets des médicaments et des substances chimiques , Milieux de culture , Induction enzymatique , Immunotransfert , Microscopie/méthodes , Nitrogenase/biosynthèse , OxydoréductionRÉSUMÉ
The hypothesis that elevated [CO(2)] alleviates ureide inhibition of N(2)-fixation was tested. Short-term responses of the acetylene reduction assay (ARA), ureide accumulation and total non-structural carbohydrate (TNC) levels were measured following addition of ureide to the nutrient solution of hydroponically grown soybean. The plants were exposed to ambient (360 micromol mol(-1)) or elevated (700 micromol mol(-1)) [CO(2)]. Addition of 5 and 10 mM ureide to the nutrient solution inhibited N(2)-fixation activity under both ambient and elevated [CO(2)] conditions. However, the percentage inhibition following ureide treatment was significantly greater under ambient [CO(2)] as compared with that under elevated [CO(2)]. Under ambient [CO(2)] conditions, ARA was less than that under elevated [CO(2)] 1 d after ureide treatment. Under ambient [CO(2)], the application of ureide resulted in a significant accumulation of ureide in all plant tissues, with the highest concentration increases in the leaves. However, application of exogenous ureide to plants subjected to elevated [CO(2)] did not result in increased ureide concentration in any tissues. TNC concentrations were consistently higher under elevated [CO(2)] compared with those under ambient [CO(2)]. For both [CO(2)] treatments, the application of ureide induced a significant decrease of TNC concentrations in the leaves and nodules. For both leaves and nodules, a negative correlation was observed between TNC and ureide levels. Results indicate that product(s) of ureide catabolism rather than tissue ureide concentration itself are critical in the regulation of N(2)-fixation.
Sujet(s)
Dioxyde de carbone/pharmacologie , Glycine max/métabolisme , Fixation de l'azote , Nitrogenase/métabolisme , Urée/analogues et dérivés , Acétylène/métabolisme , Bradyrhizobium/physiologie , Antienzymes/pharmacologie , Nitrogenase/antagonistes et inhibiteurs , Feuilles de plante/métabolisme , Glycine max/enzymologie , Urée/pharmacologieRÉSUMÉ
Protection of nitrogenase against oxygen inactivation in diazotrophs involves numerous strategies. Glutathione is known to play an important role in scavenging oxyradicals in many living systems. The involvement of glutathione (reduced) (GSH), glutathione peroxidase (GPX) and glutathione reductase (GR) in the protection of nitrogenase in free living diazotrophs is reported here for the first time. Reduced glutathione content and the activity of glutathione peroxidase and glutathione reductase increased with increase in oxygen concentration under nitrogen fixing conditions but decreased under anaerobic and nitrogenase repressed conditions. This correlation is used to postulate a protecting role for GSH-GPX-GR system against oxygen inactivation of nitrogenase.
Sujet(s)
Enterobacteriaceae/effets des médicaments et des substances chimiques , Radicaux libres/pharmacologie , Glutathione peroxidase/métabolisme , Glutathione reductase/métabolisme , Glutathion/métabolisme , Nitrogenase/métabolisme , Oxygène/pharmacologie , Enterobacteriaceae/métabolisme , Fixation de l'azote , Nitrogenase/antagonistes et inhibiteurs , OxydoréductionRÉSUMÉ
Aerobic and microaerobic diazotrophs possess numerous oxygen restriction strategies to protect nitrogenase from inactivation by oxygen without interfering with energy generation through oxidative phosphorylation. Protection by conformational change in nitrogenase was first detected and described in Azotobacter. This strategy once considerd unique for Azotobacter has been shown in this study to occur in Citrobacterfreundii (Braak) Werkman and Gillen and Klebsiella pneumoniae subspecies rhinoscleromatis (Trevisan) Migula also. However, in these enteric bacteria the entire enzyme is not protected probably due to the absence of any respiratory protection similar to that found in the aerobe, Azotobacter.
Sujet(s)
Enterobacteriaceae/effets des médicaments et des substances chimiques , Enterobacteriaceae/enzymologie , Nitrogenase/antagonistes et inhibiteurs , Oxygène/métabolisme , Nitrogenase/métabolisme , Stress oxydatif , Phosphorylation , Conformation des protéines , Facteurs tempsRÉSUMÉ
The nitrogenase MoFe protein contains the active site metallocluster called FeMo-cofactor [7Fe-9S-Mo-homocitrate] that exhibits an S = 3/2 EPR signal in the resting state. No interaction with FeMo-cofactor is detected when either substrates or inhibitors are incubated with MoFe protein in the resting state. Rather, the detection of such interactions requires the incubation of the MoFe protein together with its obligate electron donor, called the Fe protein, and MgATP under turnover conditions. This indicates that a more reduced state of the MoFe protein is required to accommodate substrate or inhibitor interaction. In the present work, substitution of an arginine residue (alpha-96(Arg)) located next to the active site FeMo-cofactor in the MoFe protein by leucine, glutamine, alanine, or histidine is found to result in MoFe proteins that can interact with acetylene or cyanide in the as-isolated, resting state without the need for the Fe protein, or MgATP. The dithionite-reduced, resting states of the alpha-96(Leu)-, alpha-96(Gln)-, alpha-96(Ala)-, or alpha-96(His)-substituted MoFe proteins show an S = 3/2 EPR signal (g = 4.26, 3.67, 2.00) similar to that assigned to FeMo-cofactor in the wild-type MoFe protein. However, in contrast to the wild-type MoFe protein, the alpha-96-substituted MoFe proteins all exhibit changes in their EPR spectra upon incubation with acetylene or cyanide. The alpha-96(Leu)-substituted MoFe protein was representative of the other alpha-96-substituted MoFe proteins examined. The incubation of acetylene with the alpha-96(Leu) MoFe protein decreased the intensity of the normal FeMo-cofactor signal with the appearance of a new EPR signal having inflections at g = 4.50 and 3.50. Incubation of cyanide with the alpha-96(Leu) MoFe protein also decreased the FeMo-cofactor EPR signal with concomitant appearance of a new EPR signal having an inflection at g = 4.06. The acetylene- and cyanide-dependent EPR signals observed for the alpha-96(Leu)-substituted MoFe protein were found to follow Curie law 1/T dependence, consistent with a ground-state transition as observed for FeMo-cofactor. The microwave power dependence of the EPR signal intensity is shifted to higher power for the acetylene- and cyanide-dependent signals, consistent with a change in the relaxation properties of the spin system of FeMo-cofactor. Finally, the alpha-96(Leu)-substituted MoFe protein incubated with (13)C-labeled cyanide displays a (13)C ENDOR signal with an isotropic hyperfine coupling of 0.42 MHz in Q-band Mims pulsed ENDOR spectra. This indicates the existence of some spin density on the cyanide, and thus suggests that the new component of the cyanide-dependent EPR signals arise from the direct bonding of cyanide to the FeMo-cofactor. These data indicate that both acetylene and cyanide are able to interact with FeMo-cofactor contained within the alpha-96-substituted MoFe proteins in the resting state. These results support a model where effective interaction of substrates or inhibitors with FeMo-cofactor occurs as a consequence of both increased reactivity and accessibility of FeMo-cofactor under turnover conditions. We suggest that, for the wild-type MoFe protein, the alpha-96(Arg) side chain acts as a gatekeeper, moving during turnover in order to permit accessibility of acetylene or cyanide to a specific [4Fe-4S] face of FeMo-cofactor.
Sujet(s)
Acétylène/métabolisme , Substitution d'acide aminé , Cyanures/métabolisme , Molybdoferrédoxine/composition chimique , Nitrogenase/composition chimique , Arginine/métabolisme , Azotobacter vinelandii/enzymologie , Sites de fixation , Monoxyde de carbone/composition chimique , Domaine catalytique , Spectroscopie de résonance de spin électronique , Antienzymes/composition chimique , Glutamine/métabolisme , Histidine/métabolisme , Leucine/métabolisme , Molybdoferrédoxine/antagonistes et inhibiteurs , Molybdoferrédoxine/métabolisme , Nitrogenase/antagonistes et inhibiteurs , Nitrogenase/métabolisme , Spécificité du substrat , ThermodynamiqueRÉSUMÉ
The glnZ mutant of Azospirillum brasilense (strain 7611) showed only partial recovery (20 to 40%) after 80 min of ammonia-induced nitrogenase switch-off, whereas the wild type recovered totally within 10 min. In contrast, the two strains showed identical anoxic-induced switch-on/switch-off, indicating no cross talk between the two reactivation mechanisms.
Sujet(s)
Azospirillum brasilense/métabolisme , Protéines bactériennes/physiologie , Nitrogenase/métabolisme , Ammoniac , Anaérobiose , Azospirillum brasilense/enzymologie , Protéines bactériennes/génétique , Mutation , Nitrogenase/antagonistes et inhibiteurs , Facteurs tempsRÉSUMÉ
Effects of trifluralin on soil microbial populations and the nitrogen fixation activity of nitrogen-fixing bacteria Azotobacter chroococcum and Bradyrhizobium japonicum and the decomposition of trifluralin by soil microorganisms were studied. Trifluralin at lower concentrations from 0.5 mg microg(-1) dry soil to lower than 10.0 mg microg(-1) dry soil appeared to stimulate the growth of soil bacteria, actinomycetes, mould, and the pure cultures of Br. japonicum and A. chroococcum. Not only the colony amounts of these two species of nitrogen-fixing bacteria increased, grown on agar medium containing lower concentrations of trifluralin, but also these colonies also enlarged in size and appeared obviously in shorter formation time. However, trifluralin at higher concentrations would inhibit the development of microbial colonies both in amount and size. Trifluralin inhibited the activity of acetylene reduction of A. chroococcum when it was added at the same time of inoculation with A. chroococcum, but it showed a noteworthy stimulation to nitrogen fixation of A.chroococcum when it was put into culture after the cells of the nitrogen-fixing bacterium had grown well. The observation that soil microorganisms could use trifluralin as sole carbon and nitrogen resources for their growth, indicated that microorganisms could decompose trifluralin well.
Sujet(s)
Azotobacter/métabolisme , Bradyrhizobium/métabolisme , Fixation de l'azote/effets des médicaments et des substances chimiques , Microbiologie du sol , Trifluraline/pharmacologie , Azotobacter/effets des médicaments et des substances chimiques , Bradyrhizobium/effets des médicaments et des substances chimiques , Nitrogenase/antagonistes et inhibiteurs , Polluants du sol/métabolisme , Trifluraline/effets indésirablesRÉSUMÉ
Two novel electron paramagnetic resonance (EPR) signals arising from the [1Mo-7Fe-9S-homocitrate] (FeMoco) centres of MoFe protein of Klebsiella pneumoniae nitrogenase (Kp1) were observed following turnover under MgATP-limited conditions. The combination of the nitrogenase Fe protein of Clostridium pasteurianum showed similar signals. The accumulation of MgADP under these conditions causes the normal EPR signal of dithionite-reduced Kp1 (with g=4.3, 3.6, 2.01) to be slowly converted to novel signals with g=4.74, 3.32, 2.00 and g=4.58, 3.50, 1.99. These signals do not form in incubation of protein mixtures containing only MgADP, thus they may be associated with trapped intermediates of the catalytic cycle.