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1.
Physiol Plant ; 176(4): e14388, 2024.
Article de Anglais | MEDLINE | ID: mdl-38946634

RÉSUMÉ

Plants can experience a variety of environmental stresses that significantly impact their fitness and survival. Additionally, biotic stress can harm agriculture, leading to reduced crop yields and economic losses worldwide. As a result, plants have developed defense strategies to combat potential invaders. These strategies involve regulating redox homeostasis. Several studies have documented the positive role of plant antioxidants, including Ascorbate (Asc), under biotic stress conditions. Asc is a multifaceted antioxidant that scavenges ROS, acts as a co-factor for different enzymes, regulates gene expression, and facilitates iron transport. However, little attention has been given to Asc and its transport, regulatory effects, interplay with phytohormones, and involvement in defense processes under biotic stress. Asc interacts with other components of the redox system and phytohormones to activate various defense responses that reduce the growth of plant pathogens and promote plant growth and development under biotic stress conditions. Scientific reports indicate that Asc can significantly contribute to plant resistance against biotic stress through mutual interactions with components of the redox and hormonal systems. This review focuses on the role of Asc in enhancing plant resistance against pathogens. Further research is necessary to gain a more comprehensive understanding of the molecular and cellular regulatory processes involved.


Sujet(s)
Acide ascorbique , Facteur de croissance végétal , Plantes , Stress physiologique , Facteur de croissance végétal/métabolisme , Acide ascorbique/métabolisme , Plantes/métabolisme , Plantes/immunologie , Antioxydants/métabolisme , Oxydoréduction , Régulation de l'expression des gènes végétaux , Maladies des plantes/immunologie , Maladies des plantes/microbiologie
2.
Curr Microbiol ; 81(8): 252, 2024 Jul 02.
Article de Anglais | MEDLINE | ID: mdl-38953991

RÉSUMÉ

Spiroplasma, belonging to the class Mollicutes, is a small, helical, motile bacterium lacking a cell wall. Its host range includes insects, plants, and aquatic crustaceans. Recently, a few human cases of Spiroplasma infection have been reported. The diseases caused by Spiroplasma have brought about serious economic losses and hindered the healthy development of agriculture. The pathogenesis of Spiroplasma involves the ability to adhere, such as through the terminal structure of Spiroplasma, colonization, and invasive enzymes. However, the exact pathogenic mechanism of Spiroplasma remains a mystery. Therefore, we systematically summarize all the information about Spiroplasma in this review article. This provides a reference for future studies on virulence factors and treatment strategies of Spiroplasma.


Sujet(s)
Spiroplasma , Facteurs de virulence , Spiroplasma/génétique , Animaux , Humains , Facteurs de virulence/génétique , Virulence , Infections bactériennes à Gram négatif/microbiologie , Plantes/microbiologie
3.
Curr Microbiol ; 81(8): 254, 2024 Jul 02.
Article de Anglais | MEDLINE | ID: mdl-38955887

RÉSUMÉ

Pantoea agglomerans inhabit diverse ecological niches, ranging from epiphytes and endophytes in plants, body of animals, and occasionally in the human system. This multifaceted bacterium contributes substantially to plant growth promotion, stress resilience, and biocontrol but can also act as a pathogen to its host. The genetic determinants underlying these diverse functions remain largely unfathomed and to uncover this phenomenon, nineteen strains of Pantoea agglomerans were selected and analyzed. Genome-to-Genome Distance Calculator (GGDC) which uses the Genome Blast Distance Phylogeny (GBDP) technique to calculate digital DDH values. Phylogenetic analysis via Genome-to-Genome distance, Average Nucleotide Identity, and Amino Acid Identity calculation revealed that all strains belonged to the genus Pantoea. However, strain 33.1 had a lower value than the threshold for the same species delineation. Bacterial Pan Genome Analysis (BPGA) Pipeline and MinPath analysis revealed genetic traits associated with environmental resilience, such as oxidative stress, UV radiation, temperature extremes, and metabolism of distinct host-specific carbohydrates. Protein-protein interactome analysis illustrated osmotic stress proteins closely linked with core proteins, while heavy metal tolerance, nitrogen metabolism, and Type III and VI secretion systems proteins generally associated with pathogenicity formed a separate network, indicating strain-specific characteristics. These findings shed new light on the intricate genetic architecture of Pantoea agglomerans, revealing its adaptability to inhabit diverse niches and thrive in varied environments.


Sujet(s)
Génome bactérien , Pantoea , Phylogenèse , Pantoea/génétique , Pantoea/physiologie , Pantoea/classification , Génomique , Adaptation physiologique , Humains , Animaux , Plantes/microbiologie , Protéines bactériennes/génétique , Protéines bactériennes/métabolisme
4.
Acta Biotheor ; 72(3): 8, 2024 Jun 29.
Article de Anglais | MEDLINE | ID: mdl-38949721

RÉSUMÉ

Plants are capable of a range of complex interactions with the environment. Over the last decade, some authors have used this as evidence to argue that plants are cognitive agents. While there is no consensus on this view, it is certainly interesting to approach the debate from a comparative perspective, trying to understand whether different lineages of plants show different degrees of responsiveness to environmental cues, and how their responses compare with those of animals or humans. In this paper, I suggest that a potentially fruitful approach to these comparative studies is provided by automata theory. Accordingly, I shall present a possible application of this theory to plant communication. Two tentative results will emerge. First, that different lineages may exhibit different levels of complexity in response to similar stimuli. Second, that current evidence does not allow to infer great cognitive sophistication in plants.


Sujet(s)
Phénomènes physiologiques des plantes , Plantes , Humains , Animaux , Cognition/physiologie
5.
Sci Rep ; 14(1): 15027, 2024 07 01.
Article de Anglais | MEDLINE | ID: mdl-38951138

RÉSUMÉ

Plant growth and high yields are secured by intensive use of nitrogen (N) fertilizer, which, however, pollutes the environment, especially when N is in the form of nitrate. Ammonium is oxidized to nitrate by nitrifiers, but roots can release biological nitrification inhibitors (BNIs). Under what conditions does root-exudation of BNIs facilitate nitrogen N uptake and reduce pollution by N loss to the environment? We modeled the spatial-temporal dynamics of nitrifiers, ammonium, nitrate, and BNIs around a root and simulated root N uptake and net rhizosphere N loss over the plant's life cycle. We determined the sensitivity of N uptake and loss to variations in the parameter values, testing a broad range of soil-plant-microbial conditions, including concentrations, diffusion, sorption, nitrification, population growth, and uptake kinetics. An increase in BNI exudation reduces net N loss and, under most conditions, increases plant N uptake. BNIs decrease uptake in the case of (1) low ammonium concentrations, (2) high ammonium adsorption to the soil, (3) rapid nitrate- or slow ammonium uptake by the plant, and (4) a slowly growing or (5) fast-declining nitrifier population. Bactericidal inhibitors facilitate uptake more than bacteriostatic ones. Some nitrification, however, is necessary to maximize uptake by both ammonium and nitrate transporter systems. An increase in BNI exudation should be co-selected with improved ammonium uptake. BNIs can reduce N uptake, which may explain why not all species exude BNIs but have a generally positive effect on the environment by increasing rhizosphere N retention.


Sujet(s)
Nitrification , Azote , Racines de plante , Azote/métabolisme , Racines de plante/métabolisme , Microbiologie du sol , Nitrates/métabolisme , Plantes/métabolisme , Composés d'ammonium/métabolisme , Sol/composition chimique , Rhizosphère , Engrais
6.
PLoS One ; 19(7): e0306578, 2024.
Article de Anglais | MEDLINE | ID: mdl-38959281

RÉSUMÉ

Thoughtfully managed hydroperiods in natural and artificial wetlands could potentially provide a combination of desirable flood control services and high ecological functions. To explore how managed freshwater wetlands typical of the Houston, Texas area would respond to different hydrological regimes that might occur if wetlands were drained in anticipation of a heavy rain that did not materialize, we conducted a mesocosm experiment with six flooding depths and seven drought durations, followed by seven months of recovery. We found that the speed in which mesocosms dried out was a function of initial water depth, with mesocosms initially set with greater water depths (30 cm) taking ~ 38 days to dry out versus zero days for wetlands that were completely drained. Individual plant species (14 species planted; 8 species common at the end of the recovery period) were affected by drought length, flooding depth, or their interaction, although details of these responses varied among the species. The composition of the plant community at the end of the drought period was strongly affected by drought length, and the effect of the drought length treatment persisted through seven months of post-drought recovery, with the 80- and 160-day drought treatments diverging most strongly from shorter drought treatments. Above- and below-ground biomass of plants was not affected by the treatments, but above-ground dead biomass (litter) decreased with increasing drought length. Densities of mosquito larvae, snails and tadpoles were temporally variable, and were affected more during the treatment period and early in recovery than after a disturbance event late in recovery. Our results indicate that managed wetlands in southeast Texas would be quite resilient to dry periods of up to 40 days in duration, especially if water was not completely drained at the beginning of the drought. In addition, many species would persist in managed wetlands even with droughts of up to 160 days. This indicates considerable potential for managing the hydroperiods of artificial detention ponds by retaining water longer to increase ecological function, with little to no loss of flood control services, and for managing the hydroperiods of natural wetlands by draining them in advance of anticipated rains to increase flood control services, with little to no loss of ecological function.


Sujet(s)
Inondations , Eau douce , Invertébrés , Zones humides , Animaux , Invertébrés/physiologie , Plantes , Sécheresses , Texas
7.
PLoS One ; 19(7): e0306531, 2024.
Article de Anglais | MEDLINE | ID: mdl-38954696

RÉSUMÉ

This paper presents research on the assessment of the radioecological state of plant cover surrounding two research reactor facilities located within the Semipalatinsk Test Site (STS) as examples of nuclear fuel cycle facilities (NFC). Source data on the concentrations of artificial radionuclides in the plant cover were obtained. Quantitative values for 137Cs, 241Am, and 239+240Pu activity concentrations were determined in plants across the perimeters of the facilities, indicating that these compounds may be present in the associated media from the perspective of accumulative bioindication. The values determined for artificial radionuclides in the 'soil‒plant' system around the researched NFC facilities were attributed to radioactive contamination of the STS territory.


Sujet(s)
Contrôle des radiations , Radio-isotopes , Contrôle des radiations/méthodes , Radio-isotopes/analyse , Plantes/composition chimique , Plantes/métabolisme , Polluants radioactifs du sol/analyse , Radio-isotopes du césium/analyse , Réacteurs nucléaires , Centrales nucléaires
8.
Trop Anim Health Prod ; 56(6): 197, 2024 Jul 05.
Article de Anglais | MEDLINE | ID: mdl-38965123

RÉSUMÉ

The soil-plant-animal continuum represents an evolving realm in biological research that's why this study was undertaken in the middle Gangetic plain region of India. Trace and ultra-trace elements were analyzed in 100 soil samples, 147 feed and fodder samples, as well as 69 blood and 127 hair samples with the help of inductively coupled plasma optical emission spectroscopy (ICP-OES). The levels of trace and ultra-trace elements in the soil were significantly higher than those in the feed, and similarly, the concentrations in the feed were notably higher than those in the blood of dairy cattle. Blood and hair samples from the cattle showed deficiencies in copper (Cu) and manganese (Mn), with reaching approximately 20% and 50%, respectively. Correlation analysis indicated significant (P < 0.05) associations between the trace and ultra-trace elements in plants and the corresponding elements found in cattle's hair, specifically for iron (Fe) and molybdenum (Mo). Conversely, a significant (P < 0.05) negative correlation was observed between soil composition and cattle's blood, while a positive correlation was evident only in the case of silver content between plant and cattle's hair. Regression analyses revealed positive linear relationships between minerals in soils and plants, as well as between plants and cattle. However, the correlation coefficients were statistically insignificant. The regression equations established to predict mineral concentrations in cattle based on soil and plant mineral contents indicated a positive relationship for both trace and ultra-trace elements, suggesting the potential to measure the mineral status in dairy cattle through this approach.


Sujet(s)
Aliment pour animaux , Poils , Sol , Oligoéléments , Animaux , Inde , Oligoéléments/analyse , Oligoéléments/sang , Sol/composition chimique , Bovins , Poils/composition chimique , Aliment pour animaux/analyse , Plantes/composition chimique
9.
Nat Commun ; 15(1): 5641, 2024 Jul 05.
Article de Anglais | MEDLINE | ID: mdl-38969636

RÉSUMÉ

On a global scale, biodiversity is geographically structured into regions of biotic similarity. Delineating these regions has been mostly targeted for tetrapods and plants, but those for hyperdiverse groups such as insects are relatively unknown. Insects may have higher biogeographic congruence with plants than tetrapods due to their tight ecological and evolutionary links with the former, but it remains untested. Here, we develop a global regionalization for a major and widespread insect group, ants, based on the most comprehensive distributional and phylogenetic information to date, and examine its similarity to regionalizations for tetrapods and vascular plants. Our ant regionalization supports the newly proposed Madagascan and Sino-Japanese realms based on tetrapod delineations, and it recovers clusters observed in plants but not in tetrapods, such as the Holarctic and Indo-Pacific realms. Quantitative comparison suggests strong associations among different groups-plants showed a higher congruence with ants than with tetrapods. These results underscore the wide congruence of diverse distribution patterns across the tree of life and the similarities shared by insects and plants that are not captured by tetrapod groups. Our analysis highlights the importance of developing global biogeographic maps for insect groups to obtain a more comprehensive geographic picture of life on Earth.


Sujet(s)
Fourmis , Biodiversité , Phylogenèse , Phylogéographie , Plantes , Animaux , Fourmis/physiologie , Plantes/classification , Évolution biologique
10.
Sci Rep ; 14(1): 15465, 2024 07 05.
Article de Anglais | MEDLINE | ID: mdl-38965394

RÉSUMÉ

Cliffs contain one of the least known plant communities, which has been overlooked in biodiversity assessments due to the inherent inaccessibility. Our study adopted the unmanned aerial vehicle (UAV) with the telephoto camera to remotely clarify floristic variability across unreachable cliffs. Studied cliffs comprised 17 coastal and 13 inland cliffs in Gageodo of South Korea, among which 9 and 5 cliffs were grazed by the introduced cliff-dwelling goats. The UAV telephotography showed 154 and 166 plant species from coastal and inland cliffs, respectively. Inland cliffs contained more vascular plant species (P < 0.001), increased proportions of fern and woody species (P < 0.05), and decreased proportion of herbaceous species (P < 0.001) than coastal cliffs. It was also found that coastal and inland cliffs differed in the species composition (P < 0.001) rather than taxonomic beta diversity (P = 0.29). Furthermore, grazed coastal cliffs featured the elevated proportions of alien and annual herb species than ungrazed coastal cliffs (P < 0.05). This suggests that coastal cliffs might not be totally immune to grazing if the introduced herbivores are able to access cliff microhabitats; therefore, such anthropogenic introduction of cliff-dwelling herbivores should be excluded to conserve the native cliff plant communities.


Sujet(s)
Biodiversité , Plantes , Animaux , République de Corée , Iles , Dispositifs aériens sans pilote , Herbivorie , Capra , Écosystème
11.
PLoS One ; 19(7): e0306568, 2024.
Article de Anglais | MEDLINE | ID: mdl-38968235

RÉSUMÉ

Exploring the relationship between soil properties and species diversity in typical forest stands in Liaoning Xianrendong National Nature Reserve will help maintain the stability of forest communities in the transition zone between flora in Changbai and North China. Based on the plant-soil feedback theory, community sample data from nine typical forest stands in the study area and experimental test data from 54 soil samples, we selected indexes of soil physical and chemical properties based on the minimum data set (temperature, compactness, capillary pore space, bulk weight, capillary water holding capacity, drainage capacity, soil water storage, conductivity, pH, organic matter, Ca, Fe, K, N and P). We adopt the research method of classical statistical analysis. The soil properties of nine typical stands in Xianrendong National Nature Reserve of Liaoning Province were systematically analyzed. The relationship between soil properties and forest stands' species diversity was quantified using correlation and redundancy analyses. The Pearson correlation analysis results showed significant positive correlations between the Gleason abundance index (arbors) with conductivity, pH, organic matter, Ca, N and P; Pielou's evenness index (arbors) with bulk weight and Fe. Significant negative correlations between the Gleason abundance index (arbors) with capillary pore space, bulk weight, drainage capacity, soil water storage and capillary water holding capacity; Simpson dominance index and Shannon-Wiener diversity index with capillary water holding capacity, drainage capacity and soil water storage; Pielou's evenness index (arbors) with Ca and N. The natural moisture content and clay particles are neutral feedback. The results showed that the feedback mechanism of soil physicochemical properties on stand species diversity was complex, which was conducive to species coexistence and community stability.


Sujet(s)
Biodiversité , Forêts , Sol , Sol/composition chimique , Chine , Plantes/classification , Arbres
12.
PLoS One ; 19(7): e0306174, 2024.
Article de Anglais | MEDLINE | ID: mdl-38968313

RÉSUMÉ

A long-standing key issue for examining the relationships between biodiversity and ecosystem functioning (BEF), such as forest productivity, is whether ecosystem functions are influenced by the total number of species or the properties of a few key species. Compared with controlled ecosystem experiments, the BEF relationships in secondary forest remain unclear, as do the effects of common species richness and rare species richness on the variation in ecosystem functions. To address this issue, we conducted field surveys at five sampling sites (1 ha each) with subtropical secondary evergreen broad-leaved forest vegetation. We found (1) a positive correlation between species richness and standing aboveground biomass (AGB); (2) that common species were primarily responsible for the distribution patterns of species abundance and dominance; although they accounted for approximately 25% of the total species richness on average, they represented 86-91% of species abundance and 88-97% of species dominance; and (3) that common species richness could explain much more of the variation in AGB than total species richness (common species plus rare species) at both the site and plot scales. Because rare species and common species were not equivalent in their ability to predict productivity in the biodiversity-ecosystem productivity model, redundant information should be eliminated to obtain more accurate results. Our study suggested that woody plant species richness and productivity relationship in subtropical forest ecosystem can be explained and predicted by a few common species.


Sujet(s)
Biodiversité , Biomasse , Forêts , Climat tropical , Arbres/croissance et développement , Arbres/physiologie , Spécificité d'espèce , Plantes/classification , Écosystème , Bois
13.
Virologie (Montrouge) ; 28(3): 199-215, 2024 Jun 01.
Article de Français | MEDLINE | ID: mdl-38970341

RÉSUMÉ

Viroids are the smallest non-coding infectious RNAs (between 246 and 401 nucleotides) known to be highly structured and replicate autonomously in the host plants. Although they do not encode any peptides, viroids induce visible symptoms in susceptible host plants. This article provides an overview of their physical and biological properties, the diseases they cause and their significance for the plants. The mechanisms underlying the expression of symptoms in host plants, their detection and various strategies employed for diseases prevention are also developed.


Sujet(s)
Maladies des plantes , Plantes , ARN viral , Viroïdes , Viroïdes/génétique , Viroïdes/physiologie , Maladies des plantes/virologie , Maladies des plantes/prévention et contrôle , ARN viral/génétique , ARN non traduit/génétique , ARN non traduit/physiologie , Réplication virale
14.
Sci Rep ; 14(1): 15306, 2024 07 03.
Article de Anglais | MEDLINE | ID: mdl-38961150

RÉSUMÉ

The Taihangshan-Yanshan region (TYR) is an important ecological barrier area for Beijing-Tianjin-Hebei, and the effectiveness of its ecological restoration and protection is of great significance to the ecological security pattern of North China. Based on the FVC data from 2000 to 2021, residual analysis, parametric optimal geodetector technique (OPGD) and multi-scale geographically weighted regression analysis (MGWR) were used to clarify the the multivariate driving mechanism of the evolution of FVC in the TYR. Results show that: (1) FVC changes in the TYR show a slowly fluctuating upward trend, with an average growth rate of 0.02/10a, and a spatial pattern of "high in the northwest and low in the southeast"; more than half of the FVC increased during the 22-year period. (2) The results of residual analysis showed that the effects of temperature and precipitation on FVC were very limited, and a considerable proportion (80.80% and 76.78%) of the improved and degraded areas were influenced by other factors. (3) The results of OPGD showed that the main influencing factors of the spatial differentiation of FVC included evapotranspiration, surface temperature, land use type, nighttime light intensity, soil type, and vegetation type (q > 0.2); The explanatory rates of the two-factor interactions were greater than those of the single factor, which showed either nonlinear enhancement or bifactorial enhancement, among which, the interaction of evapotranspiration with mean air and surface temperature has the strongest effect on the spatial and temporal evolution of FVC (q = 0.75). Surface temperature between 4.98 and 10.4 °C, evapotranspiration between 638 and 762 mm/a, and nighttime light between 1.96 and 7.78 lm/m2 favoured an increase in vegetation cover, and vegetation developed on lysimetric soils was more inclined to be of high cover. (4) The correlation between each variable and FVC showed different performance, GDP, elevation, slope and FVC showed significant positive correlation in most regions, while population size, urban population proportion, GDP proportion of primary and secondary industries, and nighttime light intensity all showed negative correlation with FVC to different degrees. The results can provide data for formulating regional environmental protection and restoration policies.


Sujet(s)
Écosystème , Chine , Conservation des ressources naturelles , Plantes , Température , Surveillance de l'environnement/méthodes , Sol
15.
Physiol Plant ; 176(4): e14419, 2024.
Article de Anglais | MEDLINE | ID: mdl-38973451

RÉSUMÉ

Abiotic stress impairs plant growth and development, thereby causing low yield and inferior quality of crops. Increasing studies reported that strigolactones (SL) are plant hormones that enhance plant stress resistance by regulating plant physiological processes and gene expressions. In this review, we introduce the response and regulatory role of SL in salt, drought, light, heat, cold and cadmium stresses in plants. This review also discusses how SL alleviate the damage of abiotic stress in plants, furthermore, introducing the mechanisms of SL enhancing plant stress resistance at the genetic level. Under abiotic stress, the exogenous SL analog GR24 can induce the biosynthesis of SL in plants, and endogenous SL can alleviate the damage caused by abiotic stress. SL enhanced the stress resistance of plants by protecting photosynthesis, enhancing the antioxidant capacity of plants and promoting the symbiosis between plants and arbuscular mycorrhiza (AM). SL interact with abscisic acid (ABA), salicylic acid (SA), auxin, cytokinin (CK), jasmonic acid (JA), hydrogen peroxide (H2O2) and other signal molecules to jointly regulate plant stress resistance. Lastly, both the importance of SL and their challenges for future work are outlined in order to further elucidate the specific mechanisms underlying the roles of SL in plant responses to abiotic stress.


Sujet(s)
Lactones , Facteur de croissance végétal , Stress physiologique , Lactones/métabolisme , Facteur de croissance végétal/métabolisme , Plantes/métabolisme , Plantes/effets des médicaments et des substances chimiques , Plantes/génétique , Régulation de l'expression des gènes végétaux/effets des médicaments et des substances chimiques
16.
Environ Monit Assess ; 196(7): 675, 2024 Jun 29.
Article de Anglais | MEDLINE | ID: mdl-38951302

RÉSUMÉ

Vegetation is an important link between land, atmosphere, and water, making its changes of great significance. However, existing research has predominantly focused on long-term vegetation changes, neglecting the intra-annual variations of vegetation. Hence, this study is based on the Enhanced Vegetation Index (EVI) data from 2000 to 2022, with a time step of 16 days, to analyze the intra-annual patterns of vegetation changes in China. The average intra-annual EVI values for each municipal-level administrative region were calculated, and the time-series k-means clustering algorithm was employed to divide these regions, exploring the spatial variations in China's intra-annual vegetation changes. Finally, the ridge regression and random forest methods were utilized to assess the drivers of intra-annual vegetation changes. The results showed that: (1) China's vegetation status exhibits a notable intra-annual variation pattern of "high in summer and low in winter," and the changes are more pronounced in the northern regions than in the southern regions; (2) the intra-annual vegetation changes exhibit remarkable regional disparities, and China can be optimally clustered into four distinct clusters, which align well with China's temperature and precipitation zones; and (3) the intra-annual vegetation changes demonstrate significant correlations with meteorological factors such as dew point temperature, precipitation, maximum temperature, and sea-level pressure. In conclusion, our study reveals the characteristics, spatial patterns and driving forces of intra-annual vegetation changes in China, which contribute to explaining ecosystem response mechanisms, providing valuable insights for ecological research and the formulation of ecological conservation and management strategies.


Sujet(s)
Surveillance de l'environnement , Technologie de télédétection , Chine , Saisons , Plantes , Analyse de regroupements , Écosystème
17.
PeerJ ; 12: e17647, 2024.
Article de Anglais | MEDLINE | ID: mdl-38948210

RÉSUMÉ

Background: Anthropogenic activities significantly impact natural ecosystems, leading to alterations in plant and pollinator diversity and abundance. These changes often result in shifts within interacting communities, potentially reshaping the structure of plant-pollinator interaction networks. Given the escalating human footprint on habitats, evaluating the response of these networks to anthropization is critical for devising effective conservation and management strategies. Methods: We conducted a comprehensive review of the plant-pollinator network literature to assess the impact of anthropization on network structure. We assessed network metrics such as nestedness measure based on overlap and decreasing fills (NODF), network specialization (H2'), connectance (C), and modularity (Q) to understand structural changes. Employing a meta-analytical approach, we examined how anthropization activities, such as deforestation, urbanization, habitat fragmentation, agriculture, intentional fires and livestock farming, affect both plant and pollinator richness. Results: We generated a dataset for various metrics of network structure and 36 effect sizes for the meta-analysis, from 38 articles published between 2010 and 2023. Studies assessing the impact of agriculture and fragmentation were well-represented, comprising 68.4% of all studies, with networks involving interacting insects being the most studied taxa. Agriculture and fragmentation reduce nestedness and increase specialization in plant-pollinator networks, while modularity and connectance are mostly not affected. Although our meta-analysis suggests that anthropization decreases richness for both plants and pollinators, there was substantial heterogeneity in this regard among the evaluated studies. The meta-regression analyses helped us determine that the habitat fragment size where the studies were conducted was the primary variable contributing to such heterogeneity. Conclusions: The analysis of human impacts on plant-pollinator networks showed varied effects worldwide. Responses differed among network metrics, signaling nuanced impacts on structure. Activities like agriculture and fragmentation significantly changed ecosystems, reducing species richness in both pollinators and plants, highlighting network vulnerability. Regional differences stressed the need for tailored conservation. Despite insights, more research is crucial for a complete understanding of these ecological relationships.


Sujet(s)
Effets anthropiques , Écosystème , Pollinisation , Animaux , Agriculture , Biodiversité , Conservation des ressources naturelles , Insectes/physiologie , Plantes
18.
Proc Natl Acad Sci U S A ; 121(26): e2319811121, 2024 Jun 25.
Article de Anglais | MEDLINE | ID: mdl-38889146

RÉSUMÉ

Rational design of plant cis-regulatory DNA sequences without expert intervention or prior domain knowledge is still a daunting task. Here, we developed PhytoExpr, a deep learning framework capable of predicting both mRNA abundance and plant species using the proximal regulatory sequence as the sole input. PhytoExpr was trained over 17 species representative of major clades of the plant kingdom to enhance its generalizability. Via input perturbation, quantitative functional annotation of the input sequence was achieved at single-nucleotide resolution, revealing an abundance of predicted high-impact nucleotides in conserved noncoding sequences and transcription factor binding sites. Evaluation of maize HapMap3 single-nucleotide polymorphisms (SNPs) by PhytoExpr demonstrates an enrichment of predicted high-impact SNPs in cis-eQTL. Additionally, we provided two algorithms that harnessed the power of PhytoExpr in designing functional cis-regulatory variants, and de novo creation of species-specific cis-regulatory sequences through in silico evolution of random DNA sequences. Our model represents a general and robust approach for functional variant discovery in population genetics and rational design of regulatory sequences for genome editing and synthetic biology.


Sujet(s)
Polymorphisme de nucléotide simple , Séquences d'acides nucléiques régulatrices , Zea mays , Séquences d'acides nucléiques régulatrices/génétique , Zea mays/génétique , Locus de caractère quantitatif , Algorithmes , Régulation de l'expression des gènes végétaux , Apprentissage profond , Plantes/génétique , Facteurs de transcription/génétique , Facteurs de transcription/métabolisme , Modèles génétiques , Gènes de plante , Sites de fixation/génétique
19.
Proc Natl Acad Sci U S A ; 121(26): e2404034121, 2024 Jun 25.
Article de Anglais | MEDLINE | ID: mdl-38905242

RÉSUMÉ

Plant functional traits hold the potential to greatly improve the understanding and prediction of climate impacts on ecosystems and carbon cycle feedback to climate change. Traits are commonly used to place species along a global conservative-acquisitive trade-off, yet how and if functional traits and conservative-acquisitive trade-offs scale up to mediate community and ecosystem fluxes is largely unknown. Here, we combine functional trait datasets and multibiome datasets of forest water and carbon fluxes at the species, community, and ecosystem-levels to quantify the scaling of the tradeoff between maximum flux and sensitivity to vapor pressure deficit. We find a strong conservative-acquisitive trade-off at the species scale, which weakens modestly at the community scale and largely disappears at the ecosystem scale. Functional traits, particularly plant water transport (hydraulic) traits, are strongly associated with the key dimensions of the conservative-acquisitive trade-off at community and ecosystem scales, highlighting that trait composition appears to influence community and ecosystem flux dynamics. Our findings provide a foundation for improving carbon cycle models by revealing i) that plant hydraulic traits are most strongly associated with community- and ecosystem scale flux dynamics and ii) community assembly dynamics likely need to be considered explicitly, as they give rise to ecosystem-level flux dynamics that differ substantially from trade-offs identified at the species-level.


Sujet(s)
Cycle du carbone , Changement climatique , Écosystème , Forêts , Plantes/métabolisme , Eau/métabolisme
20.
Sci Rep ; 14(1): 14922, 2024 06 28.
Article de Anglais | MEDLINE | ID: mdl-38942788

RÉSUMÉ

Studying the relationships between vegetation cover and geography in the Mongolian region of the Yellow River Basin will help to optimize local vegetation recovery strategies and achieve harmonious human relations. Based on MOD13Q1 data, the spatial and temporal variations in fractional vegetation cover (FVC) in the Mongolian Yellow River Basin during 2000-2020 were investigated via trend and correlative analysis. The results are as follows: (1) From 2000 to 2020, the vegetation cover in the Mongolian section of the Yellow River Basin recovered well, the mean increase in the FVC was 0.001/a, the distribution of vegetation showed high coverage in the southeast and low coverage in the northwest, and 31.19% of the total area showed an extremely significant and significant increase in vegetation cover. (2) The explanatory power of each geographic factor significantly differed. Precipitation, soil type, air temperature, land use type and slope were the main driving factors influencing the spatial distribution of the vegetation cover, and for each factor, the explanatory power of its interaction with other factors was greater than that of the single factor. (3) The correlation coefficients between FVC and temperature and precipitation are mainly positive. The mean value of the FVC and its variation trend are characterized by differences in terrain and soil characteristics, population density and land use. Land use conversion can reflect the characteristics of human activities, and positive effects, such as returning farmland to forest and grassland and afforestation of unused land, promote the significant improvement of regional vegetation, while negative effects, such as urban expansion, inhibit the growth of vegetation.


Sujet(s)
Conservation des ressources naturelles , Rivières , Chine , Conservation des ressources naturelles/méthodes , Humains , Écosystème , Géographie , Surveillance de l'environnement/méthodes , Sol , Plantes , Mongolie
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