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1.
Sci Rep ; 14(1): 16781, 2024 07 22.
Article de Anglais | MEDLINE | ID: mdl-39039267

RÉSUMÉ

Biofilms are known to be critical for Legionella settlement in engineered water systems and are often associated with Legionnaire's Disease events. One of the key features of biofilms is their heterogeneous three-dimensional structure which supports the establishment of microbial interactions and confers protection to microorganisms. This work addresses the impact of Legionella pneumophila colonization of a Pseudomonas fluorescens biofilm, as information about the interactions between Legionella and biofilm structures is scarce. It combines a set of meso- and microscale biofilm analyses (Optical Coherence Tomography, Episcopic Differential Interference Contrast coupled with Epifluorescence Microscopy and Confocal Laser Scanning Microscopy) with PNA-FISH labelled L. pneumophila to tackle the following questions: (a) does the biofilm structure change upon L. pneumophila biofilm colonization?; (b) what happens to L. pneumophila within the biofilm over time and (c) where is L. pneumophila preferentially located within the biofilm? Results showed that P. fluorescens structure did not significantly change upon L. pneumophila colonization, indicating the competitive advantage of the first colonizer. Imaging of PNA-labelled L. pneumophila showed that compared to standard culture recovery it colonized to a greater extent the 3-day-old P. fluorescens biofilms, presumably entering in VBNC state by the end of the experiment. L. pneumophila was mostly located in the bottom regions of the biofilm, which is consistent with the physiological requirements of both bacteria and confers enhanced Legionella protection against external aggressions. The present study provides an expedited methodological approach to address specific systematic laboratory studies concerning the interactions between L. pneumophila and biofilm structure that can provide, in the future, insights for public health Legionella management of water systems.


Sujet(s)
Biofilms , Legionella pneumophila , Pseudomonas fluorescens , Biofilms/croissance et développement , Legionella pneumophila/physiologie , Pseudomonas fluorescens/physiologie , Legionella/physiologie , Microscopie confocale , Tomographie par cohérence optique
2.
Curr Microbiol ; 81(9): 264, 2024 Jul 13.
Article de Anglais | MEDLINE | ID: mdl-39001894

RÉSUMÉ

One of the main interests in the food industry is the preservation of food from spoilage by microorganisms or lipid oxidation. A novel alternative is the development of additives of natural origin with dual activity. In the present study, a chemically modified lysozyme (Lys) with epigallocatechin gallate (EGCG) was developed to obtain a conjugate (Lys-EGCG) with antibacterial/antioxidant activity to improve its properties and increase its application potential. The modification reaction was carried out using a free radical grafting method for the Lys modification reaction, using ascorbic acid and hydrogen peroxide as radical initiators in an aqueous medium. The synthesis of Lys-EGCG conjugate was confirmed by spectroscopic (FT-IR, 1H-RMN, and XPS) and calorimetry differential scanning (DSC) analyses. The EGCG binding to the Lys biomolecule was quantified by the Folin-Ciocalteu method; the antibacterial activity was evaluated by minimum inhibitory concentration (MIC) and minimum bactericidal concentration (MCB) against Staphylococcus aureus and Pseudomonas fluorescens; the antioxidant activity was evaluated by ABTS, DPPH, and FRAP. The spectroscopic results showed that the Lys-EGCG conjugate was successfully obtained, and the DSC analysis revealed a 20 °C increase (P < 0.05) in the denaturation temperature of Lys due to EGCG modification. The EGCG concentration in Lys-EGCG was 97.97 ± 4.7 µmol of EGCG/g of sample. The antibacterial and antioxidant activity of the Lys-EGCG conjugate was higher (P < 0.05) than pure EGCG and Lys. The chemical modification of Lys with EGCG allows for the bioconjugate with a dual function (antibacterial/antioxidant), broadening the range of Lys and EGCG applications to different areas such as food, cosmetic, and pharmaceutical industries.


Sujet(s)
Antibactériens , Antioxydants , Catéchine , Tests de sensibilité microbienne , Lysozyme , Pseudomonas fluorescens , Staphylococcus aureus , Catéchine/analogues et dérivés , Catéchine/composition chimique , Catéchine/pharmacologie , Lysozyme/pharmacologie , Lysozyme/composition chimique , Lysozyme/métabolisme , Antioxydants/pharmacologie , Antioxydants/composition chimique , Antibactériens/pharmacologie , Antibactériens/composition chimique , Staphylococcus aureus/effets des médicaments et des substances chimiques , Pseudomonas fluorescens/effets des médicaments et des substances chimiques
3.
Sci Total Environ ; 949: 174997, 2024 Nov 01.
Article de Anglais | MEDLINE | ID: mdl-39053541

RÉSUMÉ

This study investigated the migration behavior of microplastics (MPs) covered with natural organic matter (NOM) and biofilm on three substrates (silica, Pseudomonas fluorescent and Pseudomonas aeruginosa biofilms) in various ionic strengths, focusing on the alterations in surface properties based on surface energy theory that affected their deposition and release processes. Peptone and Pseudomonas fluorescens were employed to generate NOM-attached and biofilm-coated polystyrene (PS) (NOM-PS and Bio-PS). NOM-PS and Bio-PS both exhibited different surface properties, as increased roughness and particle sizes, more hydrophilic surfaces and altered zeta potentials which increased with ionic strength. Although the deposition of NOM-PS on biofilms were enhanced by higher ionic strengths and the addition of Ca2+, while Bio-PS deposited less on biofilms and more on the silica surface. Both types exhibited diffusion-driven adsorption on the silica surface, with Bio-PS also engaging in synergistic and competitive interactions on biofilm surfaces. Release tests revealed that NOM-PS and Bio-PS were prone to release from silica than from biofilms. The Extended Derjaguin-Landau-Verwey-Overbeek (XDLVO) theory furtherly demonstrated that mid-range electrostatic (EL) repulsion had significantly impacts on NOM-PS deposition, and structural properties of extracellular polymeric substances (EPS) and substrate could affect Bio-PS migration.


Sujet(s)
Biofilms , Polystyrènes , Pseudomonas fluorescens , Pseudomonas fluorescens/physiologie , Polluants chimiques de l'eau , Microplastiques
4.
Commun Biol ; 7(1): 867, 2024 Jul 16.
Article de Anglais | MEDLINE | ID: mdl-39014102

RÉSUMÉ

The function of proteins depends on their correct structure and proper dynamics. Understanding the dynamics of target proteins facilitates drug design and development. However, dynamic information is often hidden in the spatial structure of proteins. It is important but difficult to identify the specific residues that play a decisive role in protein dynamics. Here, we report that a critical glycine residue (Gly463) dominates the motion of threonyl-tRNA synthetase (ThrRS) and the sensitivity of the enzyme to antibiotics. Obafluorin (OB), a natural antibiotic, is a novel covalent inhibitor of ThrRS. The binding of OB induces a large conformational change in ThrRS. Through five crystal structures, biochemical and biophysical analyses, and computational simulations, we found that Gly463 plays an important role in the dynamics of ThrRS. Mutating this flexible residue into more rigid residues did not damage the enzyme's three-dimensional structure but significantly improved the thermal stability of the enzyme and suppressed its ability to change conformation. These mutations cause resistance of ThrRS to antibiotics that are conformationally selective, such as OB and borrelidin. This work not only elucidates the molecular mechanism of the self-resistance of OB-producing Pseudomonas fluorescens but also emphasizes the importance of backbone kinetics for aminoacyl-tRNA synthetase-targeting drug development.


Sujet(s)
Glycine , Threonine-tRNA ligase , Threonine-tRNA ligase/métabolisme , Threonine-tRNA ligase/composition chimique , Threonine-tRNA ligase/génétique , Threonine-tRNA ligase/antagonistes et inhibiteurs , Glycine/composition chimique , Glycine/pharmacologie , Glycine/métabolisme , Conformation des protéines , Antienzymes/composition chimique , Antienzymes/pharmacologie , Antibactériens/pharmacologie , Antibactériens/composition chimique , Mutation , Pseudomonas fluorescens/enzymologie
5.
Ecol Lett ; 27(6): e14457, 2024 Jun.
Article de Anglais | MEDLINE | ID: mdl-38844349

RÉSUMÉ

Interspecific competition can hinder populations from evolutionarily adapting to abiotic environments, particularly by reducing population size and niche space; and feedback may arise between competitive ability and evolutionary adaptation. Here we studied populations of two model bacterial species, Escherichia coli and Pseudomonas fluorescens, that evolved in monocultures and cocultures for approximately 2400 generations at three temperatures. The two species showed a reversal in competitive dominance in cocultures along the temperature gradient. Populations from cocultures where they had been competitively dominant showed the same magnitude of fitness gain as those in monocultures. However, competitively inferior populations in cocultures showed limited abiotic adaptation compared with those in monocultures. The inferior populations in cocultures were also more likely to evolve weaker interspecific competitive ability, or go extinct. The possible competitive ability-adaptation feedback may have crucial consequences for population persistence.


Sujet(s)
Adaptation physiologique , Évolution biologique , Escherichia coli , Pseudomonas fluorescens , Pseudomonas fluorescens/physiologie , Pseudomonas fluorescens/génétique , Escherichia coli/physiologie , Température
6.
Microb Cell Fact ; 23(1): 162, 2024 Jun 01.
Article de Anglais | MEDLINE | ID: mdl-38824548

RÉSUMÉ

BACKGROUND: Syringic acid (SA) is a high-value natural compound with diverse biological activities and wide applications, commonly found in fruits, vegetables, and herbs. SA is primarily produced through chemical synthesis, nonetheless, these chemical methods have many drawbacks, such as considerable equipment requirements, harsh reaction conditions, expensive catalysts, and numerous by-products. Therefore, in this study, a novel biotransformation route for SA production was designed and developed by using engineered whole cells. RESULTS: An O-methyltransferase from Desulfuromonas acetoxidans (DesAOMT), which preferentially catalyzes a methyl transfer reaction on the meta-hydroxyl group of catechol analogues, was identified. The whole cells expressing DesAOMT can transform gallic acid (GA) into SA when S-adenosyl methionine (SAM) is used as a methyl donor. We constructed a multi-enzyme cascade reaction in Escherichia coli, containing an endogenous shikimate kinase (AroL) and a chorismate lyase (UbiC), along with a p-hydroxybenzoate hydroxylase mutant (PobA**) from Pseudomonas fluorescens, and DesAOMT; SA was biosynthesized from shikimic acid (SHA) by using whole cells catalysis. The metabolic system of chassis cells also affected the efficiency of SA biosynthesis, blocking the chorismate metabolism pathway improved SA production. When the supply of the cofactor NADPH was optimized, the titer of SA reached 133 µM (26.2 mg/L). CONCLUSION: Overall, we designed a multi-enzyme cascade in E. coli for SA biosynthesis by using resting or growing whole cells. This work identified an O-methyltransferase (DesAOMT), which can catalyze the methylation of GA to produce SA. The multi-enzyme cascade containing four enzymes expressed in an engineered E. coli for synthesizing of SA from SHA. The metabolic system of the strain and biotransformation conditions influenced catalytic efficiency. This study provides a new green route for SA biosynthesis.


Sujet(s)
Biocatalyse , Escherichia coli , Acide gallique , Génie métabolique , Acide gallique/métabolisme , Acide gallique/analogues et dérivés , Escherichia coli/métabolisme , Escherichia coli/génétique , Génie métabolique/méthodes , Methyltransferases/métabolisme , Methyltransferases/génétique , Acide shikimique/métabolisme , Pseudomonas fluorescens/métabolisme , Pseudomonas fluorescens/enzymologie , Pseudomonas fluorescens/génétique , Biotransformation
7.
Int J Biol Macromol ; 273(Pt 2): 133225, 2024 Jul.
Article de Anglais | MEDLINE | ID: mdl-38897501

RÉSUMÉ

This work aimed to investigate the antibacterial ability and potential mechanism of chitosan grafted gentisate acid derivatives (CS-g-GA) against Pseudomonas fluorescens. The results showed that CS-g-GA had a significant suppressive impact on the growth of Pseudomonas fluorescens, the minimum inhibitory concentration (MIC) and minimum bactericidal concentration (MBC) were 0.64 mg/mL and 1.28 mg/mL, respectively. Results of scanning electron microscopy (SEM) and alkaline phosphatase (AKPase) confirmed that CS-g-GA destroyed the cell structure thereby causing the leakage of intracellular components. In addition, 1 × MIC of CS-g-GA could significantly inhibit the formation of biofilms, and 74.78 % mature biofilm and 86.21 % extracellular polysaccharide of Pseudomonas fluorescens were eradicated by CS-g-GA at 2 × MIC. The results on the respiratory energy metabolism system and antioxidant system demonstrated that CS-g-GA caused respiratory disturbance and energy limitation by influencing the key enzyme activities. It could also bind to DNA and affect genetic metabolism. From this, it could be seen that CS-g-GA had the potential to control foodborne contamination of Pseudomonas fluorescens by attacking multiple targets.


Sujet(s)
Antibactériens , Antioxydants , Biofilms , Chitosane , Gentisates , Tests de sensibilité microbienne , Pseudomonas fluorescens , Pseudomonas fluorescens/effets des médicaments et des substances chimiques , Biofilms/effets des médicaments et des substances chimiques , Biofilms/croissance et développement , Chitosane/pharmacologie , Chitosane/composition chimique , Antibactériens/pharmacologie , Antibactériens/composition chimique , Antioxydants/pharmacologie , Antioxydants/composition chimique , Gentisates/pharmacologie , Gentisates/composition chimique
8.
Molecules ; 29(12)2024 Jun 19.
Article de Anglais | MEDLINE | ID: mdl-38930986

RÉSUMÉ

In this study, hybrid skeleton material ZIF-8@ZIF-67 was synthesized by the epitaxial growth method and then was utilized as a carrier for encapsulating Pseudomonas fluorescens lipase (PFL) through the co-precipitation method, resulting in the preparation of immobilized lipase (PFL@ZIF-8@ZIF-67). Subsequently, it was further treated with glutaraldehyde to improve protein immobilization yield. Under optimal immobilization conditions, the specific hydrolytic activity of PFL@ZIF-8@ZIF-67 was 20.4 times higher than that of the free PFL. The prepared biocatalyst was characterized and analyzed by scanning electron microscopy (SEM), X-ray diffraction (XRD), and Fourier transform infrared (FT-IR). Additionally, the thermal stability of PFL@ZIF-8@ZIF-67 at 50 °C was significantly improved compared to the free PFL. After 7 weeks at room temperature, PFL@ZIF-8@ZIF-67 retained 78% of the transesterification activity, while the free enzyme was only 29%. Finally, PFL@ZIF-8@ZIF-67 was applied to the neryl acetate preparation in a solvent-free system, and the yield of neryl acetate reached 99% after 3 h of reaction. After 10 repetitions, the yields of neryl acetate catalyzed by PFL@ZIF-8@ZIF-67 and the free PFL were 80% and 43%, respectively.


Sujet(s)
Enzymes immobilisées , Triacylglycerol lipase , Pseudomonas fluorescens , Enzymes immobilisées/composition chimique , Enzymes immobilisées/métabolisme , Pseudomonas fluorescens/enzymologie , Triacylglycerol lipase/composition chimique , Triacylglycerol lipase/métabolisme , Estérification , Stabilité enzymatique , Zéolites/composition chimique , Spectroscopie infrarouge à transformée de Fourier , Température , Acétates/composition chimique , Diffraction des rayons X , Biocatalyse , Imidazoles
9.
mSphere ; 9(7): e0029424, 2024 Jul 30.
Article de Anglais | MEDLINE | ID: mdl-38904362

RÉSUMÉ

Microorganisms interact with plant roots through colonization of the root surface, i.e., the rhizoplane or the surrounding soil, i.e., the rhizosphere. Beneficial rhizosphere bacteria such as Pseudomonas spp. can promote plant growth and protect against pathogens by producing a range of bioactive compounds, including specialized metabolites like cyclic lipopeptides (CLPs) known for their biosurfactant and antimicrobial activities. However, the role of CLPs in natural soil systems during bacteria-plant interactions is underexplored. Here, Pseudomonas fluorescens SBW25, producing the CLP viscosin, was used to study the impact of viscosin on bacterial root colonization and microbiome assembly in two cultivars of winter wheat (Heerup and Sheriff). We inoculated germinated wheat seeds with SBW25 wild type or a viscosin-deficient mutant and grew the plants in agricultural soil. After 2 weeks, enhanced root colonization of SBW25 wild type compared to the viscosin-deficient mutant was observed, while no differences were observed between wheat cultivars. In contrast, the impact on root-associated microbial community structure was plant-genotype-specific, and SBW25 wild type specifically reduced the relative abundance of an unclassified oomycete and Phytophthora in Sheriff and Heerup, respectively. This study provides new insights into the natural role of viscosin and specifically highlights the importance of viscosin in wheat root colonization under natural soil conditions and in shaping the root microbial communities associated with different wheat cultivars. Furthermore, it pinpoints the significance of microbial microdiversity, plant genotype, and microbe-microbe interactions when studying colonization of plant roots. IMPORTANCE: Understanding parameters governing microbiome assembly on plant roots is critical for successfully exploiting beneficial plant-microbe interactions for improved plant growth under low-input conditions. While it is well-known from in vitro studies that specialized metabolites are important for plant-microbe interactions, e.g., root colonization, studies on the ecological role under natural soil conditions are limited. This might explain the often-low translational power from laboratory testing to field performance of microbial inoculants. Here, we showed that viscosin synthesis potential results in a differential impact on the microbiome assembly dependent on wheat cultivar, unlinked to colonization potential. Overall, our study provides novel insights into factors governing microbial assembly on plant roots, and how this has a derived but differential effect on the bacterial and protist communities.


Sujet(s)
Génotype , Microbiote , Racines de plante , Pseudomonas fluorescens , Rhizosphère , Microbiologie du sol , Triticum , Triticum/microbiologie , Pseudomonas fluorescens/génétique , Pseudomonas fluorescens/métabolisme , Racines de plante/microbiologie , Microbiote/génétique , Sol/composition chimique , Lipopeptides/métabolisme , Lipopeptides/génétique , Lipopeptides/pharmacologie , Peptides cycliques/génétique , Peptides cycliques/métabolisme
10.
Int J Biol Macromol ; 273(Pt 1): 133029, 2024 Jul.
Article de Anglais | MEDLINE | ID: mdl-38852716

RÉSUMÉ

This study determined the inhibitory mechanism as well as anti-biofilm activity of chlorogenic acid-grafted-chitosan (CS-g-CA) against Pseudomonas fluorescens (P. fluorescens) in terms of biofilm content, oxidative stress, quorum sensing and cyclic diguanosine monophosphate (c-di-GMP) concentration, and detected the changes in the expression levels of related genes by quantitative real-time PCR (qRT-PCR). Results indicated that treatment with sub-concentrations of CS-g-CA for P. fluorescens led to reduce the biofilm size of large colonies, decrease the content of biofilm and extracellular polymers, weaken the motility and adhesion of P. fluorescens. Moreover, CS-g-CA resulted in higher ROS levels, diminished catalase activity (CAT), and increased superoxide dismutase (SOD) in P. fluorescens. CS-g-CA reduced the production of quorum-sensing signaling molecules (AHLs) and the concentration of c-di-GMP in bacteria. Genes for flagellar synthesis (flgA), the resistance to stress (rpoS and hfq), and pde (phosphodiesterases that degrade c-di-GMP) were significantly down-regulated as determined by RT-PCR. Overall, CS-g-CA leads to the accumulation of ROS in bacteria via P. fluorescens environmental resistance genes and decreases the activity of enzymes in the bacterial antioxidant system, and interferes with the production and reception of quorum-sensing signaling molecules and the synthesis of c-di-GMP in P. fluorescens, which regulates the generation of biofilms.


Sujet(s)
Biofilms , Chitosane , Acide chlorogénique , GMP cyclique , Stress oxydatif , Pseudomonas fluorescens , Détection du quorum , Pseudomonas fluorescens/effets des médicaments et des substances chimiques , Pseudomonas fluorescens/métabolisme , Chitosane/composition chimique , Chitosane/pharmacologie , Biofilms/effets des médicaments et des substances chimiques , Détection du quorum/effets des médicaments et des substances chimiques , Stress oxydatif/effets des médicaments et des substances chimiques , GMP cyclique/analogues et dérivés , GMP cyclique/métabolisme , Acide chlorogénique/pharmacologie , Acide chlorogénique/composition chimique , Régulation de l'expression des gènes bactériens/effets des médicaments et des substances chimiques , Espèces réactives de l'oxygène/métabolisme
11.
J Hazard Mater ; 476: 134984, 2024 Sep 05.
Article de Anglais | MEDLINE | ID: mdl-38943891

RÉSUMÉ

As well known, surface discharge cold plasma has efficient inactivation ability and a variety of RONS are main active particles for inactivation, but their synergistic mechanism is still not clear. Therefore, surface discharge cold plasma system was applied to treat Pseudomonas fluorescens to study bacterial inactivation mechanism and energy benefit. Results showed that energy efficiency was directly proportional to applied voltage and inversely proportional to initial concentration. Cold plasma treatment for 20 min was inactivated by approximately > 4-log10Pseudomonas fluorescens and application of •OH and 1O2 scavengers significantly improved survival rate. In addition, •OH and 1O2 destroyed cell membrane structure and membrane permeability, which promoted diffusion of RONS into cells and affecting energy metabolism and antioxidant capacity, leading to bacterial inactivation. Furthermore, accumulation of intracellular NO and ONOOH was related to infiltration of exogenous RNS, while accumulation of •OH, H2O2, 1O2, O2- was the result of joint action of endogenous and exogenous ROS. Transcriptome analysis revealed that different RONS of cold plasma were responsible for Pseudomonas fluorescens inactivation and related to activation of intracellular antioxidant defense system and regulation of genes expression related to amino acid metabolism and energy metabolism, which promoting cellular process, catalytic activity and other biochemical pathways.


Sujet(s)
Gaz plasmas , Pseudomonas fluorescens , Espèces réactives de l'oxygène , Pseudomonas fluorescens/métabolisme , Gaz plasmas/pharmacologie , Espèces réactives de l'oxygène/métabolisme , Espèces réactives de l'azote/métabolisme , Microbiologie de l'eau , Viabilité microbienne/effets des médicaments et des substances chimiques
12.
Sci Total Environ ; 932: 173029, 2024 Jul 01.
Article de Anglais | MEDLINE | ID: mdl-38719039

RÉSUMÉ

Plant growth regulators (PGR) and plant growth-promoting bacteria (PGPB) have the potential in phytoremediation of heavy metals (HMs) contaminated soils. However, their sole application may not yield the optimal results, thus necessitating the combined application. The present study aimed to enhance the phytoremediation efficiency of Sedum alfredii Hance (S. alfredii) in acidic and alkaline soils through the combination of PGR (Brassinolide, BR) and PGPB (Pseudomonas fluorescens, P. fluorescens). The combination of BR and P. fluorescens (BRB treatment) effectively increased the removal efficiency of S. alfredii for Cd, Pb, and Zn by 355.2 and 155.3 %, 470.1 and 128.9 %, and 408.4 and 209.6 %, in acidic and alkaline soils, respectively. Moreover, BRB treatment led to a substantial increase in photosynthetic pigments contents and antioxidant enzymes activities, resulting in a remarkable increase in biomass (86.71 and 47.22 %) and dry mass (101.49 and 42.29 %) of plants grown in acidic and alkaline soils, respectively. Similarly, BRB treatment significantly elevated the Cd (109.4 and 71.36 %), Pb (174.9 and 48.03 %), and Zn levels (142.8 and 104.3 %) in S. alfredii shoots, along with cumulative accumulation of Cd (122.7 and 79.47 %), Pb (183.8 and 60.49 %), and Zn (150.7 and 117.9 %), respectively. In addition, the BRB treatment lowered the soil pH and DTPA-HMs contents, while augmenting soil enzymatic activities, thereby contributing soil microecology and facilitating the HMs absorption and translocation by S. alfredii to over-ground tissues. Furthermore, the evaluation of microbial community structure in phyllosphere and rhizosphere after remediation revealed the shift in microbial abundance. The combined treatment altered the principal effects on S. alfredii HMs accumulation from bacterial diversity to the soil HMs availability. In summary, our findings demonstrated that synergistic application of BR and P. fluorescens represents a viable approach to strengthen the phytoextraction efficacy of S. alfredii in varying soils.


Sujet(s)
Dépollution biologique de l'environnement , Métaux lourds , Facteur de croissance végétal , Pseudomonas fluorescens , Sedum , Polluants du sol , Sol , Sedum/métabolisme , Polluants du sol/métabolisme , Métaux lourds/métabolisme , Facteur de croissance végétal/métabolisme , Sol/composition chimique , Pseudomonas fluorescens/métabolisme , Microbiologie du sol
13.
Int J Mol Sci ; 25(10)2024 May 07.
Article de Anglais | MEDLINE | ID: mdl-38791129

RÉSUMÉ

Next-generation sequencing has transformed the acquisition of vast amounts of genomic information, including the rapid identification of target gene sequences in metagenomic databases. However, dominant species can sometimes hinder the detection of rare bacterial species. Therefore, a highly sensitive amplification technique that can selectively amplify bacterial genomes containing target genes of interest was developed in this study. The rolling circle amplification (RCA) method can initiate amplification from a single locus using a specific single primer to amplify a specific whole genome. A mixed cell suspension was prepared using Pseudomonas fluorescens ATCC17400 (targeting nonribosomal peptide synthetase [NRPS]) and Escherichia coli (non-target), and a specific primer designed for the NRPS was used for the RCA reaction. The resulting RCA product (RCP) amplified only the Pseudomonas genome. The NRPS was successfully amplified using RCP as a template from even five cells, indicating that the single-priming RCA technique can specifically enrich the target genome using gene-specific primers. Ultimately, this specific genome RCA technique was applied to metagenomes extracted from sponge-associated bacteria, and NRPS sequences were successfully obtained from an unknown sponge-associated bacterium. Therefore, this method could be effective for accessing species-specific sequences of NRPS in unknown bacteria, including viable but non-culturable bacteria.


Sujet(s)
Génome bactérien , Techniques d'amplification d'acides nucléiques , Amino-acid ligases , Amino-acid ligases/génétique , Techniques d'amplification d'acides nucléiques/méthodes , Séquençage nucléotidique à haut débit/méthodes , Escherichia coli/génétique , Pseudomonas fluorescens/génétique , Analyse de séquence d'ADN/méthodes , Métagénome/génétique
14.
Plant Physiol Biochem ; 211: 108678, 2024 Jun.
Article de Anglais | MEDLINE | ID: mdl-38714126

RÉSUMÉ

The consistently increasing use of zinc oxide nanoparticles (ZnONPs) in crop optimization practices and their persistence in agro-environment necessitate expounding their influence on sustainable agro-environment. Attempts have been made to understand nanoparticle-plant beneficial bacteria (PBB)- plant interactions; the knowledge of toxic impact of nanomaterials on soil-PBB-vegetable systems and alleviating nanotoxicity using PBB is scarce and inconsistent. This study aims at bio-fabrication of ZnONPs from Rosa indica petal extracts and investigates the impact of PBB on growth and biochemical responses of biofertilized eggplants exposed to phyto-synthesized nano-ZnO. Microscopic and spectroscopic techniques revealed nanostructure, triangular shape, size 32.5 nm, and different functional groups of ZnONPs and petal extracts. Inoculation of Pseudomonas fluorescens and Azotobacter chroococcum improved germination efficiency by 22% and 18% and vegetative growth of eggplants by 14% and 15% under NPs stress. Bio-inoculation enhanced total chlorophyll content by 36% and 14 %, increasing further with higher ZnONP concentrations. Superoxide dismutase and catalase activity in nano-ZnO and P. fluorescens inoculated eggplant shoots reduced by 15-23% and 9-11%. Moreover, in situ experiment unveiled distortion and accumulation of NPs in roots revealed by scanning electron microscope and confocal laser microscope. The present study highlights the phytotoxicity of biosynthesized ZnONPs to eggplants and demonstrates that PBB improved agronomic traits of eggplants while declining phytochemicals and antioxidant levels. These findings suggest that P. fluorescens and A. chroococcum, with NPs ameliorative activity, can be cost-effective and environment-friendly strategy for alleviating NPs toxicity and promoting eggplant production under abiotic stress, fulfilling vegetable demands.


Sujet(s)
Nanoparticules métalliques , Solanum melongena , Oxyde de zinc , Oxyde de zinc/pharmacologie , Solanum melongena/effets des médicaments et des substances chimiques , Solanum melongena/métabolisme , Solanum melongena/croissance et développement , Solanum melongena/microbiologie , Nanoparticules métalliques/composition chimique , Nanoparticules métalliques/toxicité , Pseudomonas fluorescens/effets des médicaments et des substances chimiques , Pseudomonas fluorescens/métabolisme , Azotobacter/effets des médicaments et des substances chimiques , Azotobacter/métabolisme , Stress physiologique/effets des médicaments et des substances chimiques , Chlorophylle/métabolisme , Nanoparticules/composition chimique
15.
Arch Microbiol ; 206(6): 283, 2024 May 29.
Article de Anglais | MEDLINE | ID: mdl-38806864

RÉSUMÉ

The objective of this study was to investigate the effectiveness of a phage cocktail against Pseudomonas fluorescens group and its effect on the microbial, physical and chemical properties of raw milk during different storage conditions. A phage cocktail consisting of Pseudomonas fluorescens, Pseudomonas tolaasii, and Pseudomonas libanensis phages was prepared. As a result, reductions in fluorescent Pseudomonas counts of up to 3.44 log units for the storage at 4 °C and 2.38 log units for the storage at 25 °C were achieved. Following the phage application, it is found that there was no significant difference in the total mesophilic aerobic bacteria and Enterobacteriaceae counts. However, it was observed that the number of lactic acid bacteria was higher in phage-treated groups. The results also showed that pH values in the phage added groups were lower than the others and the highest titratable acidity was obtained only in the bacteria-inoculated group. As a future perspective, this study suggests that, while keeping the number of target microorganisms under control in the milk with the use of phages during storage, the microbiota and accordingly the quality parameters of the milk can be affected. This work contributes to the development of effective strategies for maintaining the quality and extending the shelf life of milk and dairy products.


Sujet(s)
Lait , Phages de Pseudomonas , Pseudomonas fluorescens , Lait/microbiologie , Pseudomonas fluorescens/virologie , Animaux , Phages de Pseudomonas/physiologie , Phages de Pseudomonas/isolement et purification , Microbiologie alimentaire , Concentration en ions d'hydrogène , Bactériophages/physiologie , Bactériophages/isolement et purification
16.
J Microbiol Methods ; 222: 106956, 2024 Jul.
Article de Anglais | MEDLINE | ID: mdl-38759758

RÉSUMÉ

Flow cytometry (FCM) provides unique information on bacterial viability and physiology, allowing a real-time early warning antimicrobial and antibiofilm monitoring system for preventing the spread risk of foodborne disease. The present work used a combined culture-based and FCM approach to assess the in vitro efficacy of essential oils (EOs) from condiment plants commonly used in Mediterranean Europe (i.e., thyme EO, oregano EO, basil EO, and lemon EO) against planktonic and sessile cells of food-pathogenic Listeria monocytogenes 56 LY, and contaminant and alterative species Escherichia coli ATCC 25922 and Pseudomonas fluorescens ATCC 13525. Evaluation of the bacterial response to the increasing concentrations of natural compounds posed FCM as a crucial technique for the quantification of the live/dead, and viable but non-culturable (VBNC) cells when antimicrobial agents exert no real bactericidal action. Furthermore, the FCM results displayed higher numbers of viable bacteria expressed as Active Fluorescent Units (AFUs) with a greater level of repeatability compared with outcomes of the plate-count method. Overall, accurate counting of viable microbial cells is a critically important parameter in food microbiology, and flow cytometry provides an innovative approach with high-throughput potential for applications in the food industry as "flow microbiology".


Sujet(s)
Biofilms , Escherichia coli , Cytométrie en flux , Microbiologie alimentaire , Listeria monocytogenes , Viabilité microbienne , Huile essentielle , Pseudomonas fluorescens , Cytométrie en flux/méthodes , Biofilms/effets des médicaments et des substances chimiques , Biofilms/croissance et développement , Pseudomonas fluorescens/effets des médicaments et des substances chimiques , Listeria monocytogenes/effets des médicaments et des substances chimiques , Huile essentielle/pharmacologie , Escherichia coli/effets des médicaments et des substances chimiques , Viabilité microbienne/effets des médicaments et des substances chimiques , Microbiologie alimentaire/méthodes , Antibactériens/pharmacologie , Thymus (plante)/composition chimique , Origanum/composition chimique , Tests de sensibilité microbienne/méthodes , Citrus/composition chimique , Ocimum basilicum/composition chimique
17.
Antimicrob Resist Infect Control ; 13(1): 40, 2024 Apr 12.
Article de Anglais | MEDLINE | ID: mdl-38605403

RÉSUMÉ

In the healthcare sector, the implementation of standardized procedures, such as those commonly employed in franchises to ensure consistent quality, remains underprioritized. Within this framework, we focus on the importance of standardized central venous catheter (CVC) insertion procedures to prevent healthcare-associated outbreaks. While antimicrobial resistance (AMR) may still not be the most prevalent problem in some institutions, its increasing significance certainly underlines the urgency of infection prevention.We aim to highlight this issue by describing and discussing an outbreak scenario of carbapenem-resistant (CR) Pseudomonas fluorescens bloodstream infections resulting from a deviation from the standardized CVC insertion procedure. This outbreak led to six episodes of catheter related bloodstream infection (CRBSI) in patients with hematologic malignancies, delaying their primary treatment. Nineteen patients were exposed, leading to an attack rate of 31.6%.


Sujet(s)
Bactériémie , Infections sur cathéters , Pseudomonas fluorescens , Humains , Antibactériens/pharmacologie , Antibactériens/usage thérapeutique , Infections sur cathéters/épidémiologie , Bactériémie/épidémiologie , Résistance bactérienne aux médicaments , Épidémies de maladies , Normes de référence
18.
Microb Pathog ; 191: 106645, 2024 Jun.
Article de Anglais | MEDLINE | ID: mdl-38631412

RÉSUMÉ

Olive knot disease, caused by Pseudomonas savastanoi, poses a significant threat to olive cultivation, necessitating sustainable alternatives to conventional chemical control. This study investigates the biocontrol effectiveness of Bacillus sp. (Og2) and Pseudomonas fluorescens (Oq5), alone and combined, against olive knot disease. Olive plants were sprayed with 5 ml of the bacteria until uniformly wet, with additional application to the soil surface. Pathogen injection occurred 24 h later. The results revealed that treating plants with a combination of both bacteria provided the highest reduction in disease severity (89.58 %), followed by P. fluorescens alone (69.38 %). Significant improvements were observed in shoot height, particularly with the combination of Bacillus sp. and P. fluorescens. The root length of olive seedlings treated with P. fluorescens and Bacillus sp., either alone or in combination, was significantly longer compared to the control and pathogen-treated seedlings. In terms of root dry weight, the most effective treatments were treated with P. fluorescens was the highest (82.94 g) among all treatments followed by the combination of both isolates with seedlings inoculated with P. savastanoi. These findings underscore the potential of Bacillus sp. and Pseudomonas fluorescens as effective biocontrol agents against olive knot disease and promoting olive seedlings growth, providing a sustainable and environmentally friendly approach to disease management.


Sujet(s)
Bacillus , Agents de lutte biologique , Olea , Maladies des plantes , Pseudomonas fluorescens , Plant , Olea/microbiologie , Pseudomonas fluorescens/physiologie , Bacillus/physiologie , Maladies des plantes/microbiologie , Maladies des plantes/prévention et contrôle , Plant/microbiologie , Plant/croissance et développement , Racines de plante/microbiologie , Antibiose
19.
Microb Ecol ; 87(1): 60, 2024 Apr 17.
Article de Anglais | MEDLINE | ID: mdl-38630182

RÉSUMÉ

Microorganisms produce siderophores, which are low-molecular-weight iron chelators when iron availability is limited. The present analyzed the role of LNPF1 as multifarious PGPR for improving growth parameters and nutrient content in peanut and soil nutrients. Such multifarious PGPR strains can be used as effective bioinoculants for peanut farming. In this work, rhizosphere bacteria from Zea mays and Arachis hypogaea plants in the Salem area of Tamil Nadu, India, were isolated and tested for biochemical attributes and characteristics that stimulate plant growth, such as the production of hydrogen cyanide, ammonia (6 µg/mL), indole acetic acid (76.35 µg/mL), and solubilizing phosphate (520 µg/mL). The 16S rRNA gene sequences identified the isolate LNPF1 as Pseudomonas fluorescens with a similarity percentage of 99% with Pseudomonas sp. Isolate LNPF1 was evaluated for the production of siderophore. Siderophore-rich supernatant using a Sep Pack C18 column and Amberlite-400 Resin Column (λmax 264) produced 298 mg/L and 50 mg/L of siderophore, respectively. The characterization of purified siderophore by TLC, HPLC, FTIR, and 2D-NMR analysis identified the compound as desferrioxamine, a hydroxamate siderophore. A pot culture experiment determined the potential of LNPF1 to improve iron and oil content and photosynthetic pigments in Arachis hypogaea L. and improve soil nutrient content. Inoculation of A. hypogea seeds with LNPF1 improved plant growth parameters such as leaf length (60%), shoot length (22%), root length (54.68%), fresh weight (47.28%), dry weight (37%), and number of nuts (66.66) compared to the control (untreated seeds). This inoculation also improved leaf iron content (43.42), short iron content (38.38%), seed iron (46.72%), seed oil (31.68%), carotenoid (64.40%), and total chlorophyll content (98.%) compared to control (untreated seeds). Bacterized seeds showed a substantial increase in nodulation (61.65%) and weight of individual nodules (95.97) vis-à-vis control. The results of the present study indicated that P. fluorescens might be utilized as a potential bioinoculant to improve growth, iron content, oil content, number of nuts and nodules of Arachishypogaea L., and enrich soil nutrients.


Sujet(s)
Arachis , Pseudomonas fluorescens , Déferoxamine , Inde , ARN ribosomique 16S/génétique , Nutriments , Sidérophores , Fer , Sol
20.
J Appl Microbiol ; 135(5)2024 May 01.
Article de Anglais | MEDLINE | ID: mdl-38632051

RÉSUMÉ

AIMS: We aimed to develop an effective bacterial combination that can combat Fusarium oxysporum infection in watermelon using in vitro and pot experiments. METHODS AND RESULTS: In total, 53 strains of Bacillus and 4 strains of Pseudomonas were screened. Pseudomonas strains P3 and P4 and Bacillus strains XY-2-3, XY-13, and GJ-1-15 exhibited good antagonistic effects against F. oxysporum. P3 and P4 were identified as Pseudomonas chlororaphis and Pseudomonas fluorescens, respectively. XY-2-3 and GJ-1-15 were identified as B. velezensis, and XY-13 was identified as Bacillus amyloliquefaciens. The three Bacillus strains were antifungal, promoted the growth of watermelon seedlings and had genes to synthesize antagonistic metabolites such as bacilysin, surfactin, yndj, fengycin, iturin, and bacillomycin D. Combinations of Bacillus and Pseudomonas strains, namely, XY-2-3 + P4, GJ-1-15 + P4, XY-13 + P3, and XY-13 + P4, exhibited a good compatibility. These four combinations exhibited antagonistic effects against 11 pathogenic fungi, including various strains of F. oxysporum, Fusarium solani, and Rhizoctonia. Inoculation of these bacterial combinations significantly reduced the incidence of Fusarium wilt in watermelon, promoted plant growth, and improved soil nutrient availability. XY-13 + P4 was the most effective combination against Fusarium wilt in watermelon with the inhibition rate of 78.17%. The number of leaves; aboveground fresh and dry weights; chlorophyll, soil total nitrogen, and soil available phosphorus content increased by 26.8%, 72.12%, 60.47%, 16.97%, 20.16%, and 16.50%, respectively, after XY-13 + P4 inoculation compared with the uninoculated control. Moreover, total root length, root surface area, and root volume of watermelon seedlings were the highest after XY-13 + P3 inoculation, exhibiting increases by 265.83%, 316.79%, and 390.99%, respectively, compared with the uninoculated control. CONCLUSIONS: XY-13 + P4 was the best bacterial combination for controlling Fusarium wilt in watermelon, promoting the growth of watermelon seedlings, and improving soil nutrient availability.


Sujet(s)
Bacillus , Citrullus , Résistance à la maladie , Fusarium , Maladies des plantes , Pseudomonas , Fusarium/croissance et développement , Citrullus/microbiologie , Citrullus/croissance et développement , Maladies des plantes/microbiologie , Maladies des plantes/prévention et contrôle , Bacillus/physiologie , Bacillus/génétique , Bacillus/croissance et développement , Pseudomonas/croissance et développement , Pseudomonas/physiologie , Antibiose , Pseudomonas fluorescens/croissance et développement , Plant/croissance et développement , Plant/microbiologie , Antifongiques/pharmacologie
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