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1.
FASEB J ; 38(13): e23759, 2024 Jul 15.
Article de Anglais | MEDLINE | ID: mdl-38949635

RÉSUMÉ

The epidermal growth factor receptor (EGFR) is an important target for cancer therapies. Many head and neck cancer (HNC) cells have been reported to overexpress EGFR; therefore, anti-EGFR therapies have been attempted in patients with HNC. However, its clinical efficacy is limited owing to the development of drug resistance. In this study, we developed an EGFR-targeting immunotoxin consisting of a clinically proven anti-EGFR IgG (cetuximab; CTX) and a toxin fragment (LR-LO10) derived from Pseudomonas exotoxin A (PE) using a novel site-specific conjugation technology (peptide-directed photo-crosslinking reaction), as an alternative option. The immunotoxin (CTX-LR-LO10) showed specific binding to EGFR and properties of a typical IgG, such as stability, interactions with receptors of immune cells, and pharmacokinetics, and inhibited protein synthesis via modification of elongation factor-2. Treatment of EGFR-positive HNC cells with the immunotoxin resulted in apoptotic cell death and the inhibition of cell migration and invasion. The efficacy of CTX-LR-LO10 was evaluated in xenograft mouse models, and the immunotoxin exhibited much stronger tumor suppression than CTX or LR-LO10. Transcriptome analyses revealed that the immunotoxins elicited immune responses and altered the expression of genes related to its mechanisms of action. These results support the notion that CTX-LR-LO10 may serve as a new therapeutic agent targeting EGFR-positive cancers.


Sujet(s)
ADP ribose transferases , Récepteurs ErbB , Exotoxines , Tumeurs de la tête et du cou , Immunoglobuline G , Immunotoxines , , Facteurs de virulence , Humains , Récepteurs ErbB/antagonistes et inhibiteurs , Récepteurs ErbB/métabolisme , Récepteurs ErbB/immunologie , Animaux , Immunotoxines/pharmacologie , Tumeurs de la tête et du cou/traitement médicamenteux , Tumeurs de la tête et du cou/immunologie , Tumeurs de la tête et du cou/métabolisme , Souris , Immunoglobuline G/pharmacologie , Lignée cellulaire tumorale , Exotoxines/pharmacologie , Tests d'activité antitumorale sur modèle de xénogreffe , Cétuximab/pharmacologie , Souris nude , Toxines bactériennes , Apoptose/effets des médicaments et des substances chimiques , Souris de lignée BALB C , Femelle , Mouvement cellulaire/effets des médicaments et des substances chimiques , Antinéoplasiques/pharmacologie
2.
Subcell Biochem ; 104: 245-267, 2024.
Article de Anglais | MEDLINE | ID: mdl-38963490

RÉSUMÉ

Bacteria encode a wide range of survival and immunity systems, including CRISPR-Cas, restriction-modification systems, and toxin-antitoxin systems involved in defence against bacteriophages, as well as survival during challenging growth conditions or exposure to antibiotics. Toxin-antitoxin (TA) systems are small two- or three-gene cassettes consisting of a metabolic regulator (the "toxin") and its associated antidote (the "antitoxin"), which also often functions as a transcriptional regulator. TA systems are widespread in the genomes of pathogens but are also present in commensal bacterial species and on plasmids. For mobile elements such as plasmids, TA systems play a role in maintenance, and increasing evidence now points to roles of chromosomal toxin-antitoxin systems in anti-phage defence. Moreover, the widespread occurrence of toxin-antitoxin systems in the genomes of pathogens has been suggested to relate to survival during host infection as well as in persistence during antibiotic treatment. Upon repeated exposure to antibiotics, TA systems have been shown to acquire point mutations as well as more dramatic rearrangements such as in-frame deletions with potential relevance for bacterial survival and pathogenesis. In this review, we present an overview of the known functional and structural consequences of mutations and rearrangements arising in bacterial toxin-antitoxin systems and discuss their relevance for survival and persistence of pathogenic species.


Sujet(s)
Bactéries , Systèmes toxine-antitoxine , Systèmes toxine-antitoxine/génétique , Bactéries/génétique , Bactéries/métabolisme , Toxines bactériennes/génétique , Toxines bactériennes/métabolisme , Protéines bactériennes/génétique , Protéines bactériennes/métabolisme
3.
Nat Commun ; 15(1): 5467, 2024 Jun 27.
Article de Anglais | MEDLINE | ID: mdl-38937463

RÉSUMÉ

The genome of Mycobacterium tuberculosis encodes for a large repertoire of toxin-antitoxin systems. In the present study, MenT3 and MenT4 toxins belonging to MenAT subfamily of TA systems have been functionally characterized. We demonstrate that ectopic expression of these toxins inhibits bacterial growth and this is rescued upon co-expression of their cognate antitoxins. Here, we show that simultaneous deletion of menT3 and menT4 results in enhanced susceptibility of M. tuberculosis upon exposure to oxidative stress and attenuated growth in guinea pigs and mice. We observed reduced expression of transcripts encoding for proteins that are essential or required for intracellular growth in mid-log phase cultures of ΔmenT4ΔT3 compared to parental strain. Further, the transcript levels of proteins involved in efficient bacterial clearance were increased in lung tissues of ΔmenT4ΔT3 infected mice relative to parental strain infected mice. We show that immunization of mice and guinea pigs with ΔmenT4ΔT3 confers significant protection against M. tuberculosis infection. Remarkably, immunization of mice with ΔmenT4ΔT3 results in increased antigen-specific TH1 bias and activated memory T cell response. We conclude that MenT3 and MenT4 are important for M. tuberculosis pathogenicity and strains lacking menT3 and menT4 have the potential to be explored further as vaccine candidates.


Sujet(s)
Protéines bactériennes , Mycobacterium tuberculosis , Tuberculose , Animaux , Cochons d'Inde , Mycobacterium tuberculosis/génétique , Mycobacterium tuberculosis/immunologie , Souris , Protéines bactériennes/génétique , Protéines bactériennes/métabolisme , Protéines bactériennes/immunologie , Tuberculose/prévention et contrôle , Tuberculose/immunologie , Tuberculose/microbiologie , Femelle , Poumon/microbiologie , Poumon/anatomopathologie , Poumon/immunologie , Délétion de gène , Toxines bactériennes/génétique , Toxines bactériennes/immunologie , Toxines bactériennes/métabolisme , Souris de lignée C57BL , Vaccins antituberculeux/immunologie , Stress oxydatif , Virulence/génétique
4.
Toxins (Basel) ; 16(6)2024 May 21.
Article de Anglais | MEDLINE | ID: mdl-38922128

RÉSUMÉ

The pathophysiology of Lyme disease, especially in its persistent form, remains to be determined. As many of the neurologic symptoms are similar to those seen in other toxin-associated disorders, a hypothesis was generated that B. burgdorferi, the causative agent of Lyme disease, may produce a neurotoxin to account for some of the symptoms. Using primers against known conserved bacterial toxin groups, and PCR technology, a candidate neurotoxin was discovered. The purified protein was temporarily named BbTox, and was subsequently found to be identical to BB0755, a protein deduced from the genome sequence of B. burgdorferi that has been annotated as a Z ribonuclease. BbTox has cytotoxic activity against cells of neural origin in tissue culture. Its toxic activity appears to be directed against cytoskeletal elements, similar to that seen with toxins of Clostridioides difficile and Clostridioides botulinum, but differing from that of cholera and E. coli toxins, and other toxins. It remains to be determined whether BbTox has direct cytotoxic effects on neural or glial cells in vivo, or its activity is primarily that of a ribonuclease analogous to other bacterial ribonucleases that are involved in antibiotic tolerance remains to be determined.


Sujet(s)
Borrelia burgdorferi , Maladie de Lyme , Borrelia burgdorferi/génétique , Borrelia burgdorferi/effets des médicaments et des substances chimiques , Maladie de Lyme/microbiologie , Maladie de Lyme/traitement médicamenteux , Animaux , Humains , Toxines bactériennes/toxicité , Cytotoxines/toxicité , Séquence d'acides aminés
5.
Toxins (Basel) ; 16(6)2024 Jun 13.
Article de Anglais | MEDLINE | ID: mdl-38922163

RÉSUMÉ

The rise in cyanobacterial blooms due to eutrophication and climate change has increased cyanotoxin presence in water. Most current water treatment plants do not effectively remove these toxins, posing a potential risk to public health. This study introduces a water treatment approach using nanostructured beads containing magnetic nanoparticles (MNPs) for easy removal from liquid suspension, coated with different adsorbent materials to eliminate cyanotoxins. Thirteen particle types were produced using activated carbon, CMK-3 mesoporous carbon, graphene, chitosan, 2,2,6,6-tetramethylpiperidine-1-oxyl (TEMPO)-oxidised cellulose nanofibers (TOCNF), esterified pectin, and calcined lignin as an adsorbent component. The particles' effectiveness for detoxification of microcystin-LR (MC-LR), cylindrospermopsin (CYN), and anatoxin-A (ATX-A) was assessed in an aqueous solution. Two particle compositions presented the best adsorption characteristics for the most common cyanotoxins. In the conditions tested, mesoporous carbon nanostructured particles, P1-CMK3, provide good removal of MC-LR and Merck-activated carbon nanostructured particles, P9-MAC, can remove ATX-A and CYN with high and fair efficacy, respectively. Additionally, in vitro toxicity of water treated with each particle type was evaluated in cultured cell lines, revealing no alteration of viability in human renal, neuronal, hepatic, and intestinal cells. Although further research is needed to fully characterise this new water treatment approach, it appears to be a safe, practical, and effective method for eliminating cyanotoxins from water.


Sujet(s)
Toxines bactériennes , Toxines de cyanobactéries , Toxines de la flore et de la faune marines , Microcystines , Purification de l'eau , Toxines de cyanobactéries/composition chimique , Humains , Microcystines/toxicité , Microcystines/composition chimique , Microcystines/isolement et purification , Toxines de la flore et de la faune marines/toxicité , Toxines de la flore et de la faune marines/composition chimique , Toxines de la flore et de la faune marines/isolement et purification , Purification de l'eau/méthodes , Adsorption , Toxines bactériennes/toxicité , Toxines bactériennes/composition chimique , Toxines bactériennes/isolement et purification , Alcaloïdes/composition chimique , Alcaloïdes/toxicité , Nanoparticules de magnétite/composition chimique , Nanoparticules de magnétite/toxicité , Tropanes/composition chimique , Tropanes/toxicité , Tropanes/isolement et purification , Nanostructures/composition chimique , Nanostructures/toxicité , Uracile/analogues et dérivés , Uracile/composition chimique , Uracile/toxicité , Cyanobactéries/composition chimique , Survie cellulaire/effets des médicaments et des substances chimiques , Polluants chimiques de l'eau/toxicité , Polluants chimiques de l'eau/composition chimique
6.
Int J Mol Sci ; 25(12)2024 Jun 07.
Article de Anglais | MEDLINE | ID: mdl-38928005

RÉSUMÉ

The pregnane X receptor (PXR) is a nuclear hormone receptor that plays a pivotal role in regulating gene expression in response to various ligands, particularly xenobiotics. In this context, the aim of this study was to shed light on the ligand affinity and functions of four NR1J1 paralogs identified in the marine mussel Mytilus galloprovincialis, employing a dual-luciferase reporter assay. To achieve this, the activation patterns of these paralogs in response to various toxins, including freshwater cyanotoxins (Anatoxin-a, Cylindrospermopsin, and Microcystin-LR, -RR, and -YR) and marine algal toxins (Nodularin, Saxitoxin, and Tetrodotoxin), alongside natural compounds (Saint John's Wort, Ursolic Acid, and 8-Methoxypsoralene) and microalgal extracts (Tetraselmis, Isochrysis, LEGE 95046, and LEGE 91351 extracts), were studied. The investigation revealed nuanced differences in paralog response patterns, highlighting the remarkable sensitivity of MgaNR1J1γ and MgaNR1J1δ paralogs to several toxins. In conclusion, this study sheds light on the intricate mechanisms of xenobiotic metabolism and detoxification, particularly focusing on the role of marine mussel NR1J1 in responding to a diverse array of compounds. Furthermore, comparative analysis with human PXR revealed potential species-specific adaptations in detoxification mechanisms, suggesting evolutionary implications. These findings deepen our understanding of PXR-mediated metabolism mechanisms, offering insights into environmental monitoring and evolutionary biology research.


Sujet(s)
Toxines de la flore et de la faune marines , Mytilus , Récepteur du prégnane X , Animaux , Récepteur du prégnane X/métabolisme , Récepteur du prégnane X/génétique , Mytilus/métabolisme , Mytilus/génétique , Humains , Microcystines/métabolisme , Microalgues/métabolisme , Microalgues/génétique , Xénobiotique/métabolisme , Toxines bactériennes/métabolisme , Toxines de cyanobactéries
7.
Biosensors (Basel) ; 14(6)2024 May 24.
Article de Anglais | MEDLINE | ID: mdl-38920572

RÉSUMÉ

In this study, we report a multiplexed platform for the simultaneous determination of five marine toxins. The proposed biosensor is based on a disposable electrical printed (DEP) microarray composed of eight individually addressable carbon electrodes. The electrodeposition of gold nanoparticles on the carbon surface offers high conductivity and enlarges the electroactive area. The immobilization of thiolated aptamers on the AuNP-decorated carbon electrodes provides a stable, well-orientated and organized binary self-assembled monolayer for sensitive and accurate detection. A simple electrochemical multiplexed aptasensor based on AuNPs was designed to synchronously detect multiple cyanotoxins, namely, microcystin-LR (MC-LR), Cylindrospermopsin (CYL), anatoxin-α, saxitoxin and okadaic acid (OA). The choice of the five toxins was based on their widespread presence and toxicity to aquatic ecosystems and humans. Taking advantage of the conformational change of the aptamers upon target binding, cyanotoxin detection was achieved by monitoring the resulting electron transfer increase by square-wave voltammetry. Under the optimal conditions, the linear range of the proposed aptasensor was estimated to be from 0.018 nM to 200 nM for all the toxins, except for MC-LR where detection was possible within the range of 0.073 to 150 nM. Excellent sensitivity was achieved with the limits of detection of 0.0033, 0.0045, 0.0034, 0.0053 and 0.0048 nM for MC-LR, CYL, anatoxin-α, saxitoxin and OA, respectively. Selectivity studies were performed to show the absence of cross-reactivity between the five analytes. Finally, the application of the multiplexed aptasensor to tap water samples revealed very good agreement with the calibration curves obtained in buffer. This simple and accurate multiplexed platform could open the window for the simultaneous detection of multiple pollutants in different matrices.


Sujet(s)
Aptamères nucléotidiques , Techniques de biocapteur , Toxines de cyanobactéries , Techniques électrochimiques , Or , Toxines de la flore et de la faune marines , Nanoparticules métalliques , Microcystines , Saxitoxine , Toxines de la flore et de la faune marines/analyse , Microcystines/analyse , Or/composition chimique , Saxitoxine/analyse , Nanoparticules métalliques/composition chimique , Toxines bactériennes/analyse , Uracile/analyse , Uracile/analogues et dérivés , Tropanes/analyse , Alcaloïdes/analyse , Acide okadaïque/analyse , Électrodes , Limite de détection
8.
Proc Natl Acad Sci U S A ; 121(25): e2316143121, 2024 Jun 18.
Article de Anglais | MEDLINE | ID: mdl-38861595

RÉSUMÉ

Vibrio vulnificus causes life-threatening wound and gastrointestinal infections, mediated primarily by the production of a Multifunctional-Autoprocessing Repeats-In-Toxin (MARTX) toxin. The most commonly present MARTX effector domain, the Makes Caterpillars Floppy-like (MCF) toxin, is a cysteine protease stimulated by host adenosine diphosphate (ADP) ribosylation factors (ARFs) to autoprocess. Here, we show processed MCF then binds and cleaves host Ras-related proteins in brain (Rab) guanosine triphosphatases within their C-terminal tails resulting in Rab degradation. We demonstrate MCF binds Rabs at the same interface occupied by ARFs. Moreover, we show MCF preferentially binds to ARF1 prior to autoprocessing and is active to cleave Rabs only subsequent to autoprocessing. We then use structure prediction algorithms to demonstrate that structural composition, rather than sequence, determines Rab target specificity. We further determine a crystal structure of aMCF as a swapped dimer, revealing an alternative conformation we suggest represents the open, activated state of MCF with reorganized active site residues. The cleavage of Rabs results in Rab1B dispersal within cells and loss of Rab1B density in the intestinal tissue of infected mice. Collectively, our work describes an extracellular bacterial mechanism whereby MCF is activated by ARFs and subsequently induces the degradation of another small host guanosine triphosphatase (GTPase), Rabs, to drive organelle damage, cell death, and promote pathogenesis of these rapidly fatal infections.


Sujet(s)
Toxines bactériennes , Vibrio vulnificus , Protéines G rab , Animaux , Femelle , Humains , Souris , Facteurs d'ADP-ribosylation/métabolisme , Toxines bactériennes/métabolisme , Toxines bactériennes/composition chimique , Cellules HEK293 , Souris de lignée ICR , Protéolyse , Protéines G rab/métabolisme , Infections à Vibrio/microbiologie , Infections à Vibrio/métabolisme , Vibrio vulnificus/métabolisme , Vibrio vulnificus/pathogénicité
9.
Microbiologyopen ; 13(3): e23, 2024 Jun.
Article de Anglais | MEDLINE | ID: mdl-38867416

RÉSUMÉ

The G protein-coupled estrogen receptor, also known as GPER1 or originally GPR30, is found in various tissues, indicating its diverse functions. It is typically present in immune cells, suggesting its role in regulating immune responses to infectious diseases. Our previous studies have shown that G-1, a selective GPER agonist, can limit the pathogenesis mediated by Staphylococcus aureus alpha-hemolysin (Hla). It aids in clearing bacteria in a mouse skin infection model and restricts the surface display of the Hla receptor, ADAM10 (a disintegrin and metalloprotease 10) in HaCaT keratinocytes. In this report, we delve into the modulation of GPER in human immune cells in relation to the NLRP3 inflammasome. We used macrophage-like differentiated THP-1 cells for our study. We found that treating these cells with G-1 reduces ATP release, decreases the activity of the caspase-1 enzyme, and lessens cell death following Hla intoxication. This is likely due to the reduced levels of ADAM10 and NLRP3 proteins, as well as the decreased display of the ADAM10 receptor in the G-1-treated THP-1 cells. Our studies, along with our previous work, suggest the potential therapeutic use of G-1 in reducing Hla susceptibility in humans. This highlights the importance of GPER in immune regulation and its potential as a therapeutic target.


Sujet(s)
Protéine ADAM10 , Amyloid precursor protein secretases , Toxines bactériennes , Hémolysines , Inflammasomes , Protéine-3 de la famille des NLR contenant un domaine pyrine , Récepteurs des oestrogènes , Récepteurs couplés aux protéines G , Staphylococcus aureus , Protéine ADAM10/métabolisme , Protéine-3 de la famille des NLR contenant un domaine pyrine/métabolisme , Humains , Récepteurs couplés aux protéines G/agonistes , Récepteurs couplés aux protéines G/métabolisme , Hémolysines/métabolisme , Inflammasomes/métabolisme , Toxines bactériennes/métabolisme , Cellules THP-1 , Récepteurs des oestrogènes/métabolisme , Amyloid precursor protein secretases/métabolisme , Staphylococcus aureus/effets des médicaments et des substances chimiques , Protéines membranaires/métabolisme , Protéines membranaires/agonistes , Caspase-1/métabolisme , Adénosine triphosphate/métabolisme , Macrophages/immunologie , Macrophages/effets des médicaments et des substances chimiques , Macrophages/métabolisme , Macrophages/microbiologie , Dipeptides , Acides hydroxamiques
10.
Microbiol Spectr ; 12(7): e0394723, 2024 Jul 02.
Article de Anglais | MEDLINE | ID: mdl-38864670

RÉSUMÉ

Clostridioides difficile (C. difficile) is widely distributed in the intestinal tract of humans, animals, and in the environment. It is the most common cause of diarrhea associated with the use of antimicrobials in humans and among the most common healthcare-associated infections worldwide. Its pathogenesis is mainly due to the production of toxin A (TcdA), toxin B (TcdB), and a binary toxin (CDT), whose genetic variants may be associated with disease severity. We studied genetic diversity in 39 C. difficile isolates from adults and children attended at two Mexican hospitals, using different gene and genome typing methods and investigated their association with in vitro expression of toxins. Whole-genome sequencing in 39 toxigenic C. difficile isolates were used for multilocus sequence typing, tcdA, and tcdB typing sequence type, and phylogenetic analysis. Strains were grown in broth media, and expression of toxin genes was measured by real-time PCR and cytotoxicity in cell-culture assays. Clustering of strains by genome-wide phylogeny matched clade classification, forming different subclusters within each clade. The toxin profile tcdA+/tcdB+/cdt+ and clade 2/ST1 were the most prevalent among isolates from children and adults. Isolates presented two TcdA and three TcdB subtypes, of which TcdA2 and TcdB2 were more prevalent. Prevalent clades and toxin subtypes in strains from children differed from those in adult strains. Toxin gene expression or cytotoxicity was not associated with genotyping or toxin subtypes. In conclusion, genomic and phenotypic analysis shows high diversity among C. difficile isolates from patients with healthcare-associated diarrhea. IMPORTANCE: Clostridioides difficile is a toxin-producing bacterial pathogen recognized as the most common cause of diarrhea acquired primarily in healthcare settings. This bacterial species is diverse; its global population has been divided into five different clades using multilocus sequence typing, and strains may express different toxin subtypes that may be related to the clades and, importantly, to the severity and progression of disease. Genotyping of children strains differed from adults suggesting toxins might present a reduced toxicity. We studied extensively cytotoxicity, expression of toxins, whole genome phylogeny, and toxin typing in clinical C. difficile isolates. Most isolates presented a tcdA+/ tcdB+/cdt+ pattern, with high diversity in cytotoxicity and clade 2/ST1 was the most prevalent. However, they all had the same TcdA2/TcdB2 toxin subtype. Advances in genomics and bioinformatics tools offer the opportunity to understand the virulence of C. difficile better and find markers for better clinical use.


Sujet(s)
Toxines bactériennes , Clostridioides difficile , Infections à Clostridium , Infection croisée , Diarrhée , Variation génétique , Typage par séquençage multilocus , Phylogenèse , Humains , Clostridioides difficile/génétique , Clostridioides difficile/classification , Clostridioides difficile/isolement et purification , Diarrhée/microbiologie , Diarrhée/épidémiologie , Mexique/épidémiologie , Enfant , Toxines bactériennes/génétique , Adulte , Infections à Clostridium/microbiologie , Infections à Clostridium/épidémiologie , Infection croisée/microbiologie , Infection croisée/épidémiologie , Protéines bactériennes/génétique , Entérotoxines/génétique , Mâle , Enfant d'âge préscolaire , Femelle , Prévalence , Adolescent , Séquençage du génome entier , Phénotype , Génome bactérien/génétique , Nourrisson , Adulte d'âge moyen , Génomique
11.
Cell Host Microbe ; 32(6): 794-803, 2024 Jun 12.
Article de Anglais | MEDLINE | ID: mdl-38870897

RÉSUMÉ

Most bacteria live in communities, often with closely related strains and species with whom they must compete for space and resources. Consequently, bacteria have acquired or evolved mechanisms to antagonize competitors through the production of antibacterial toxins. Similar to bacterial systems that combat phage infection and mechanisms to thwart antibiotics, bacteria have also acquired and evolved features to protect themselves from antibacterial toxins. Just as there is a large body of research identifying and characterizing antibacterial proteins and toxin delivery systems, studies of bacterial mechanisms to resist and survive assault from competitors' weapons have also expanded tremendously. Emerging data are beginning to reveal protective processes and mechanisms that are as diverse as the toxins themselves. Protection against antibacterial toxins can be acquired by horizontal gene transfer, receptor or target alteration, induction of protective functions, physical barriers, and other diverse processes. Here, we review recent studies in this rapidly expanding field.


Sujet(s)
Bactéries , Toxines bactériennes , Bactéries/immunologie , Bactéries/génétique , Toxines bactériennes/métabolisme , Toxines bactériennes/immunologie , Transfert horizontal de gène , Humains , Viabilité microbienne , Antibactériens/pharmacologie , Protéines bactériennes/métabolisme , Protéines bactériennes/génétique
12.
Bioinformatics ; 40(7)2024 Jul 01.
Article de Anglais | MEDLINE | ID: mdl-38885365

RÉSUMÉ

MOTIVATION: ADP-ribosylation is a critical modification involved in regulating diverse cellular processes, including chromatin structure regulation, RNA transcription, and cell death. Bacterial ADP-ribosyltransferase toxins (bARTTs) serve as potent virulence factors that orchestrate the manipulation of host cell functions to facilitate bacterial pathogenesis. Despite their pivotal role, the bioinformatic identification of novel bARTTs poses a formidable challenge due to limited verified data and the inherent sequence diversity among bARTT members. RESULTS: We proposed a deep learning-based model, ARTNet, specifically engineered to predict bARTTs from bacterial genomes. Initially, we introduced an effective data augmentation method to address the issue of data scarcity in training ARTNet. Subsequently, we employed a data optimization strategy by utilizing ART-related domain subsequences instead of the primary full sequences, thereby significantly enhancing the performance of ARTNet. ARTNet achieved a Matthew's correlation coefficient (MCC) of 0.9351 and an F1-score (macro) of 0.9666 on repeated independent test datasets, outperforming three other deep learning models and six traditional machine learning models in terms of time efficiency and accuracy. Furthermore, we empirically demonstrated the ability of ARTNet to predict novel bARTTs across domain superfamilies without sequence similarity. We anticipate that ARTNet will greatly facilitate the screening and identification of novel bARTTs from bacterial genomes. AVAILABILITY AND IMPLEMENTATION: ARTNet is publicly accessible at http://www.mgc.ac.cn/ARTNet/. The source code of ARTNet is freely available at https://github.com/zhengdd0422/ARTNet/.


Sujet(s)
ADP ribose transferases , Biologie informatique , Apprentissage profond , ADP ribose transferases/métabolisme , ADP ribose transferases/composition chimique , ADP ribose transferases/génétique , Biologie informatique/méthodes , Toxines bactériennes/composition chimique , Toxines bactériennes/métabolisme , Toxines bactériennes/génétique , Génome bactérien , Bactéries/génétique
13.
Microb Biotechnol ; 17(6): e14478, 2024 Jun.
Article de Anglais | MEDLINE | ID: mdl-38850267

RÉSUMÉ

Clostridioides difficile (CD) infections are defined by toxins A (TcdA) and B (TcdB) along with the binary toxin (CDT). The emergence of the 'hypervirulent' (Hv) strain PR 027, along with PR 176 and 181, two decades ago, reshaped CD infection epidemiology in Europe. This study assessed MALDI-TOF mass spectrometry (MALDI-TOF MS) combined with machine learning (ML) and Deep Learning (DL) to identify toxigenic strains (producing TcdA, TcdB with or without CDT) and Hv strains. In total, 201 CD strains were analysed, comprising 151 toxigenic (24 ToxA+B+CDT+, 22 ToxA+B+CDT+ Hv+ and 105 ToxA+B+CDT-) and 50 non-toxigenic (ToxA-B-) strains. The DL-based classifier exhibited a 0.95 negative predictive value for excluding ToxA-B- strains, showcasing accuracy in identifying this strain category. Sensitivity in correctly identifying ToxA+B+CDT- strains ranged from 0.68 to 0.91. Additionally, all classifiers consistently demonstrated high specificity (>0.96) in detecting ToxA+B+CDT+ strains. The classifiers' performances for Hv strain detection were linked to high specificity (≥0.96). This study highlights MALDI-TOF MS enhanced by ML techniques as a rapid and cost-effective tool for identifying CD strain virulence factors. Our results brought a proof-of-concept concerning the ability of MALDI-TOF MS coupled with ML techniques to detect virulence factor and potentially improve the outbreak's management.


Sujet(s)
Clostridioides difficile , Spectrométrie de masse MALDI , Facteurs de virulence , Clostridioides difficile/génétique , Clostridioides difficile/classification , Clostridioides difficile/composition chimique , Clostridioides difficile/pathogénicité , Spectrométrie de masse MALDI/méthodes , Facteurs de virulence/génétique , Facteurs de virulence/analyse , Humains , Infections à Clostridium/microbiologie , Infections à Clostridium/diagnostic , Protéines bactériennes/génétique , Protéines bactériennes/métabolisme , Toxines bactériennes/génétique , Apprentissage machine , Apprentissage profond , Sensibilité et spécificité , Entérotoxines/analyse , Entérotoxines/génétique
14.
Environ Microbiol Rep ; 16(3): e13297, 2024 Jun.
Article de Anglais | MEDLINE | ID: mdl-38885952

RÉSUMÉ

The Winam Gulf (Kenya) is frequently impaired by cyanobacterial harmful algal blooms (cHABs) due to inadequate wastewater treatment and excess agricultural nutrient input. While phytoplankton in Lake Victoria have been characterized using morphological criteria, our aim is to identify potential toxin-producing cyanobacteria using molecular approaches. The Gulf was sampled over two successive summer seasons, and 16S and 18S ribosomal RNA gene sequencing was performed. Additionally, key genes involved in production of cyanotoxins were examined by quantitative PCR. Bacterial communities were spatially variable, forming distinct clusters in line with regions of the Gulf. Taxa associated with diazotrophy were dominant near Homa Bay. On the eastern side, samples exhibited elevated cyrA abundances, indicating genetic capability of cylindrospermopsin synthesis. Indeed, near the Nyando River mouth in 2022, cyrA exceeded 10 million copies L-1 where there were more than 6000 Cylindrospermopsis spp. cells mL-1. In contrast, the southwestern region had elevated mcyE gene (microcystin synthesis) detections near Homa Bay where Microcystis and Dolichospermum spp. were observed. These findings show that within a relatively small embayment, composition and toxin synthesis potential of cHABs can vary dramatically. This underscores the need for multifaceted management approaches and frequent cyanotoxin monitoring to reduce human health impacts.


Sujet(s)
Toxines bactériennes , Cyanobactéries , Prolifération d'algues nuisibles , Lacs , Lacs/microbiologie , Lacs/composition chimique , Kenya , Cyanobactéries/génétique , Cyanobactéries/classification , Cyanobactéries/isolement et purification , Cyanobactéries/métabolisme , Toxines bactériennes/génétique , Microcystines/génétique , ARN ribosomique 16S/génétique , Microbiote , Phytoplancton/génétique , Toxines de cyanobactéries , Alcaloïdes/analyse , Alcaloïdes/métabolisme , ARN ribosomique 18S/génétique , Phylogenèse
15.
Harmful Algae ; 135: 102635, 2024 May.
Article de Anglais | MEDLINE | ID: mdl-38830716

RÉSUMÉ

Ongoing research on cyanotoxins, driven by the socioeconomic impact of harmful algal blooms, emphasizes the critical necessity of elucidating the toxicological profiles of algal cell extracts and pure toxins. This study comprehensively compares Raphidiopsis raciborskii dissolved extract (RDE) and cylindrospermopsin (CYN) based on Daphnia magna assays. Both RDE and CYN target vital organs and disrupt reproduction, development, and digestion, thereby causing acute and chronic toxicity. Disturbances in locomotion, reduced behavioral activity, and weakened swimming capability in D. magna have also been reported for both RDE and CYN, indicating the insufficiency of conventional toxicity evaluation parameters for distinguishing between the toxic effects of algal extracts and pure cyanotoxins. Additionally, chemical profiling revealed the presence of highly active tryptophan-, humic acid-, and fulvic acid-like fluorescence compounds in the RDE, along with the active constituents of CYN, within a 15-day period, demonstrating the chemical complexity and dynamics of the RDE. Transcriptomics was used to further elucidate the distinct molecular mechanisms of RDE and CYN. They act diversely in terms of cytotoxicity, involving oxidative stress and response, protein content, and energy metabolism, and demonstrate distinct modes of action in neurofunctions. In essence, this study underscores the distinct toxicity mechanisms of RDE and CYN and emphasizes the necessity for context- and objective-specific toxicity assessments, advocating nuanced approaches to evaluate the ecological and health implications of cyanotoxins, thereby contributing to the precision of environmental risk assessments.


Sujet(s)
Alcaloïdes , Toxines bactériennes , Toxines de cyanobactéries , Cyanobactéries , Daphnia , Animaux , Toxines bactériennes/toxicité , Daphnia/effets des médicaments et des substances chimiques , Alcaloïdes/toxicité , Cyanobactéries/composition chimique , Uracile/analogues et dérivés , Uracile/toxicité , Extrait cellulaire/composition chimique , Extrait cellulaire/pharmacologie , Prolifération d'algues nuisibles
16.
Cell Host Microbe ; 32(6): 779-781, 2024 Jun 12.
Article de Anglais | MEDLINE | ID: mdl-38870893

RÉSUMÉ

In a recent issue of Nature, Zhao et al. have demonstrated that Streptomyces spp. produce "umbrella"-shaped polymorphic toxin particles, a novel class of non-lethal toxins that gently inhibit competitors by arresting hyphal growth in closely related bacteria, unveiling a unique bacterial defense strategy in microbial ecological interactions.1.


Sujet(s)
Toxines bactériennes , Streptomyces , Streptomyces/métabolisme , Toxines bactériennes/métabolisme , Toxines bactériennes/toxicité , Antibiose , Hyphae/croissance et développement , Interactions microbiennes
17.
Infect Dis Now ; 54(4S): 104882, 2024 Jun.
Article de Anglais | MEDLINE | ID: mdl-38849255

RÉSUMÉ

Athletes are vulnerable to Staphylococcus aureus infections due to skin-to-skin contact and skin abrasions during training and competitions involving sharied sport equipment or toiletries, which promote the spread of the bacteria between athletes and within sport teams. This results not only in higher prevalence of S.aureus carriage among athletes compared to the general population, but also in outbreaks of infections, particularly skin infections, within sports teams. To limit the spread of S. aureus among athletes, a decolonization protocol can be applied when clustered cases of S. aureus infections occur, especially if Panton-Valentine leukocidin-producing strains are implicated. Finally, to avoid exposing athletes to S.aureus transmission/colonization, it is recommended to establish strict and clearly formulated individual and collective hygiene rules and to regularly disinfect shared sports equipment.


Sujet(s)
Athlètes , Sports , Infections à staphylocoques , Staphylococcus aureus , Humains , Staphylococcus aureus/isolement et purification , Staphylococcus aureus/effets des médicaments et des substances chimiques , Infections à staphylocoques/épidémiologie , État de porteur sain/épidémiologie , Paris/épidémiologie , Toxines bactériennes , Leucocidine , Exotoxines , Prévalence , Hygiène , Équipement sportif , Commémorations et événements particuliers , Épidémies de maladies/prévention et contrôle
18.
Nan Fang Yi Ke Da Xue Xue Bao ; 44(5): 998-1003, 2024 May 20.
Article de Chinois | MEDLINE | ID: mdl-38862459

RÉSUMÉ

OBJECTIVE: To investigate the characteristics of Clostridioides difficile infection (CDI) in patients hospitalized for diarrhea and analyze the risk factors for CDI. METHODS: Stool samples were collected from 306 patients with diarrhea hospitalized in 3 university hospitals in a mid-south city of China from October to December, 2020. C. difficile was isolated by anaerobic culture, and qRT-PCR was used to detect the expressions of toxin A (tcdA) and B (tcdB) genes and the binary toxin genes (cdtA and cdtB). Multilocus sequence typing (MLST) was performed for the isolated strains without contaminating strains as confirmed by 16S rDNA sequencing. Etest strips were used to determine the drug resistance profiles of the isolated strains, and the risk factors of CDI in the patients were analyzed. RESULTS: CDI was detected in 25 (8.17%) out of the 306 patients. All the patients tested positive for tcdA and tcdB but negative for the binary toxin genes. Seven noncontaminated C. difficile strains with 5 ST types were isolated, including 3 ST54 strains and one strain of ST129, ST98, ST53, and ST631 types each, all belonging to clade 1 and sensitive to metronidazole and vancomycin. Hospitalization within the past 6 months (OR= 3.675; 95% CI: 1.405-9.612), use of PPIs (OR=7.107; 95% CI: 2.575-19.613), antibiotics for ≥1 week (OR=7.306; 95% CI: 2.274-23.472), non-steroidal anti-inflammatory drugs (OR=4.754; 95% CI: 1.504-15.031) in the past month, and gastrointestinal disorders (OR=5.050; 95% CI: 1.826-13.968) were all risk factors for CDI in the patients hospitalized for diarrhea. CONCLUSION: The CDI rate remains low in the hospitalized patients with diarrhea in the investigated hospitals, but early precaution measures are recommended when exposure to the risk factors is reported to reduce the risk of CDI in the hospitalized patients.


Sujet(s)
Clostridioides difficile , Infections à Clostridium , Diarrhée , Hôpitaux universitaires , Typage par séquençage multilocus , Humains , Diarrhée/microbiologie , Diarrhée/épidémiologie , Clostridioides difficile/génétique , Clostridioides difficile/isolement et purification , Facteurs de risque , Infections à Clostridium/microbiologie , Infections à Clostridium/épidémiologie , Chine/épidémiologie , Toxines bactériennes/génétique , Fèces/microbiologie , Antibactériens/pharmacologie , Hospitalisation , Protéines bactériennes/génétique , Entérotoxines/génétique , Mâle , Femelle , Adulte d'âge moyen
19.
BMJ Open ; 14(6): e085406, 2024 Jun 12.
Article de Anglais | MEDLINE | ID: mdl-38866574

RÉSUMÉ

INTRODUCTION: Cyanobacterial blooms are increasingly common in freshwater sources used for swimming and other recreational water contact activities in Canada. Many species of cyanobacteria can produce toxins that affect human and animal health, but there are limited data on the risk of illness associated with water contact at impacted beaches. METHODS AND ANALYSIS: This study will investigate the incidence of recreational water illness due to exposure to cyanobacterial blooms and their toxins in four targeted and popular freshwater beaches in Ontario, Manitoba and Nova Scotia, Canada. A prospective cohort design and One Health approach will be used. On-site recruitment of recreational water users will be conducted at two beaches per year during the summers of 2024 and 2025. The population of interest includes recreational water users of any age and their pet dogs. After enrolment, an in-person survey will determine beach exposures and confounding factors, and a 3-day follow-up survey will ascertain any acute illness outcomes experienced by participants or their dogs. The target sample size is 2500 recreational water users. Water samples will be taken each recruitment day and analysed for cyanobacterial indicators (pigments), cell counts and toxin levels. Bayesian regression analysis will be conducted to estimate the association with water contact, cyanobacterial levels and risks of different acute illness outcomes. ETHICS AND DISSEMINATION: This study has been approved by the Toronto Metropolitan University Research Ethics Board (REB 2023-461). Study results will be published in a peer-reviewed journal and as infographics on a project website.


Sujet(s)
Plage pour la baignade , Cyanobactéries , Eau douce , Études prospectives , Humains , Animaux , Chiens , Toxines de cyanobactéries , Ontario/épidémiologie , Loisir , Microbiologie de l'eau , Toxines bactériennes , Théorème de Bayes , Nouvelle-Écosse/épidémiologie , Prolifération d'algues nuisibles , Manitoba/épidémiologie , Exposition environnementale/effets indésirables , Toxines de la flore et de la faune marines/analyse , Toxines de la flore et de la faune marines/toxicité , Plan de recherche , Canada/épidémiologie
20.
Nat Commun ; 15(1): 5028, 2024 Jun 12.
Article de Anglais | MEDLINE | ID: mdl-38866748

RÉSUMÉ

Cholesterol-dependent cytolysins (CDCs) comprise a large family of pore-forming toxins produced by Gram-positive bacteria, which are used to attack eukaryotic cells. Here, we functionally characterize a family of 2-component CDC-like (CDCL) toxins produced by the Gram-negative Bacteroidota that form pores by a mechanism only described for the mammalian complement membrane attack complex (MAC). We further show that the Bacteroides CDCLs are not eukaryotic cell toxins like the CDCs, but instead bind to and are proteolytically activated on the surface of closely related species, resulting in pore formation and cell death. The CDCL-producing Bacteroides is protected from the effects of its own CDCL by the presence of a surface lipoprotein that blocks CDCL pore formation. These studies suggest a prevalent mode of bacterial antagonism by a family of two-component CDCLs that function like mammalian MAC and that are wide-spread in the gut microbiota of diverse human populations.


Sujet(s)
Complexe d'attaque membranaire du complément , Humains , Complexe d'attaque membranaire du complément/métabolisme , Bacteroides/génétique , Bacteroides/métabolisme , Toxines bactériennes/métabolisme , Toxines bactériennes/génétique , Cytotoxines/métabolisme , Microbiome gastro-intestinal , Protéines bactériennes/métabolisme , Protéines bactériennes/génétique , Protéines du système du complément/métabolisme , Protéines du système du complément/immunologie , Animaux , Cellules eucaryotes/métabolisme
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