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1.
Nat Chem Biol ; 20(7): 906-915, 2024 Jul.
Article de Anglais | MEDLINE | ID: mdl-38831036

RÉSUMÉ

Natural photosystems couple light harvesting to charge separation using a 'special pair' of chlorophyll molecules that accepts excitation energy from the antenna and initiates an electron-transfer cascade. To investigate the photophysics of special pairs independently of the complexities of native photosynthetic proteins, and as a first step toward creating synthetic photosystems for new energy conversion technologies, we designed C2-symmetric proteins that hold two chlorophyll molecules in closely juxtaposed arrangements. X-ray crystallography confirmed that one designed protein binds two chlorophylls in the same orientation as native special pairs, whereas a second designed protein positions them in a previously unseen geometry. Spectroscopy revealed that the chlorophylls are excitonically coupled, and fluorescence lifetime imaging demonstrated energy transfer. The cryo-electron microscopy structure of a designed 24-chlorophyll octahedral nanocage with a special pair on each edge closely matched the design model. The results suggest that the de novo design of artificial photosynthetic systems is within reach of current computational methods.


Sujet(s)
Chlorophylle , Chlorophylle/composition chimique , Chlorophylle/métabolisme , Cristallographie aux rayons X , Modèles moléculaires , Photosynthèse , Transfert d'énergie , Cryomicroscopie électronique , Conformation des protéines , Complexes collecteurs de lumière/composition chimique , Complexes collecteurs de lumière/métabolisme
2.
Sci Rep ; 14(1): 13877, 2024 06 16.
Article de Anglais | MEDLINE | ID: mdl-38880795

RÉSUMÉ

Elucidating the energetic processes which govern photosynthesis, the engine of life on earth, are an essential goal both for fundamental research and for cutting-edge biotechnological applications. Fluorescent signal of photosynthetic markers has long been utilised in this endeavour. In this research we demonstrate the use of fluorescent noise analysis to reveal further layers of intricacy in photosynthetic energy transfer. While noise is a common tool analysing dynamics in physics and engineering, its application in biology has thus far been limited. Here, a distinct behaviour in photosynthetic pigments across various chemical and biological environments is measured. These changes seem to elucidate quantum effects governing the generation of oxidative radicals. Although our method offers insights, it is important to note that the interpretation should be further validated expertly to support as conclusive theory. This innovative method is simple, non-invasive, and immediate, making it a promising tool to uncover further, more complex energetic events in photosynthesis, with potential uses in environmental monitoring, agriculture, and food-tech.


Sujet(s)
Photosynthèse , Fluorescence , Transfert d'énergie , Spectrométrie de fluorescence/méthodes
3.
J Phys Chem Lett ; 15(24): 6398-6408, 2024 Jun 20.
Article de Anglais | MEDLINE | ID: mdl-38861672

RÉSUMÉ

Natural light harvesting is exceptionally efficient thanks to the local energy funnel created within light-harvesting complexes (LHCs). To understand the design principles underlying energy transport in LHCs, ultrafast spectroscopy is often complemented by mutational studies that introduce perturbations into the excitonic structure of the natural complexes. However, such studies may fall short of identifying all excitation energy transfer (EET) pathways and their changes upon mutation. Here, we show that a synergistic combination of first-principles calculations and ultrafast spectroscopy can give unprecedented insight into the EET pathways occurring within LHCs. We measured the transient absorption spectra of the minor CP29 complex of plants and of two mutants, systematically mapping the kinetic components seen in experiments to the simulated exciton dynamics. With our combined strategy, we show that EET in CP29 is surprisingly robust to the changes in the exciton states induced by mutations, explaining the versatility of plant LHCs.


Sujet(s)
Transfert d'énergie , Complexes collecteurs de lumière , Mutation , Complexes collecteurs de lumière/composition chimique , Complexes collecteurs de lumière/métabolisme , Complexes collecteurs de lumière/génétique , Cinétique , Arabidopsis/composition chimique , Arabidopsis/génétique , Arabidopsis/métabolisme , Complexe protéique du photosystème II
4.
Nat Commun ; 15(1): 4900, 2024 Jun 08.
Article de Anglais | MEDLINE | ID: mdl-38851775

RÉSUMÉ

Excitation energy transfer (EET) is a key photoinduced process in biological chromophoric assemblies. Here we investigate the factors which can drive EET into efficient ultrafast sub-ps regimes. We demonstrate how a coherent transport of electronic population could facilitate this in water solvated NADH coenzyme and uncover the role of an intermediate dark charge-transfer state. High temporal resolution ultrafast optical spectroscopy gives a 54±11 fs time constant for the EET process. Nonadiabatic quantum dynamical simulations computed through the time-evolution of multidimensional wavepackets suggest that the population transfer is mediated by photoexcited molecular vibrations due to strong coupling between the electronic states. The polar aqueous solvent environment leads to the active participation of a dark charge transfer state, accelerating the vibronically coherent EET process in favorably stacked conformers and solvent cavities. Our work demonstrates how the interplay of structural and environmental factors leads to diverse pathways for the EET process in flexible heterodimers and provides general insights relevant for coherent EET processes in stacked multichromophoric aggregates like DNA strands.


Sujet(s)
Transfert d'énergie , NAD , NAD/composition chimique , NAD/métabolisme , Théorie quantique , Eau/composition chimique
5.
Spectrochim Acta A Mol Biomol Spectrosc ; 319: 124574, 2024 Oct 15.
Article de Anglais | MEDLINE | ID: mdl-38838601

RÉSUMÉ

An electrochemiluminescence (ECL) biosensor based on ECL resonance energy transfer (ECL-RET) was designed to sensitively detect hepatitis B virus surface antigen (HBsAg). In this ECL-RET system, luminol was employed as ECL donor, and gold nanoparticles functionalized zirconium organoskeleton (UiO-66-NH2@Au) was prepared and served as ECL acceptor. The UiO-66-NH2@Au possessed an ultraviolet-visible (UV-vis) absorption between 400 nm and 500 nm, and the absorption spectra overlapped with the ECL spectrum of luminol. Furthermore, Graphene oxide-poly(aniline-luminol)-cobalt nanoparticles conjugates (GO-PALu-Co) was prepared to optimize the ECL behavior through the catalysis of Cobalt nanoparticles and served as a stable 3D porous film to load capture probe primary antibody (Ab1). Based on the ECL-RET biosensing method, the UiO-66-NH2@Au-labeled Ab2 and target HBsAg could pair with primary antibody Ab1 to form sandwich-type structure, and the ECL signal of GO-PALu-Co was quenched. Under optimized experimental conditions, the ECL-RET analytical method represented eminent analytical performance for HBsAg detection with a wide linear relationship from 2.2 × 10-13 to 2.2 × 10-5 mg/mL, and a detection limit of 9 × 10-14 mg/mL (S/N = 3), with spiked sample recoveries ranging from 97.27 % to 102.73 %. The constructed sensor has good stability, reproducibility, and specificity. It can be used to detect HBsAg in human serum and has the potential to be used for the sensitive detection of other disease biomarkers.


Sujet(s)
Techniques de biocapteur , Cobalt , Techniques électrochimiques , Or , Graphite , Antigènes de surface du virus de l'hépatite B , Mesures de luminescence , Luminol , Luminol/composition chimique , Cobalt/composition chimique , Antigènes de surface du virus de l'hépatite B/analyse , Antigènes de surface du virus de l'hépatite B/sang , Or/composition chimique , Techniques électrochimiques/méthodes , Mesures de luminescence/méthodes , Humains , Graphite/composition chimique , Techniques de biocapteur/méthodes , Porosité , Limite de détection , Nanoparticules métalliques/composition chimique , Zirconium/composition chimique , Transfert d'énergie
6.
Nat Commun ; 15(1): 4999, 2024 Jun 12.
Article de Anglais | MEDLINE | ID: mdl-38866834

RÉSUMÉ

Cryptophytes are ancestral photosynthetic organisms evolved from red algae through secondary endosymbiosis. They have developed alloxanthin-chlorophyll a/c2-binding proteins (ACPs) as light-harvesting complexes (LHCs). The distinctive properties of cryptophytes contribute to efficient oxygenic photosynthesis and underscore the evolutionary relationships of red-lineage plastids. Here we present the cryo-electron microscopy structure of the Photosystem II (PSII)-ACPII supercomplex from the cryptophyte Chroomonas placoidea. The structure includes a PSII dimer and twelve ACPII monomers forming four linear trimers. These trimers structurally resemble red algae LHCs and cryptophyte ACPI trimers that associate with Photosystem I (PSI), suggesting their close evolutionary links. We also determine a Chl a-binding subunit, Psb-γ, essential for stabilizing PSII-ACPII association. Furthermore, computational calculation provides insights into the excitation energy transfer pathways. Our study lays a solid structural foundation for understanding the light-energy capture and transfer in cryptophyte PSII-ACPII, evolutionary variations in PSII-LHCII, and the origin of red-lineage LHCIIs.


Sujet(s)
Cryomicroscopie électronique , Cryptophyta , Complexes collecteurs de lumière , Complexe protéique du photosystème II , Complexe protéique du photosystème II/métabolisme , Complexe protéique du photosystème II/composition chimique , Complexes collecteurs de lumière/métabolisme , Complexes collecteurs de lumière/composition chimique , Cryptophyta/métabolisme , Photosynthèse , Modèles moléculaires , Transfert d'énergie , Complexe protéique du photosystème I/métabolisme , Complexe protéique du photosystème I/composition chimique , Chlorophylle A/métabolisme , Chlorophylle A/composition chimique
7.
Anal Chim Acta ; 1315: 342822, 2024 Aug 01.
Article de Anglais | MEDLINE | ID: mdl-38879216

RÉSUMÉ

In this study, a novel electrochemiluminescence (ECL) biosensor was developed to detect microRNA-21 (miRNA-21) with high sensitivity by leveraging the combined mechanisms of resonance energy transfer (RET) and surface plasmon coupling (SPC). Initially, the glassy carbon electrode (GCE) were coated with Cu-Zn-In-S quantum dots (CZIS QDs), known for their defect-related emission suitable for ECL sensing. Subsequently, a hairpin DNA H3 with gold nanoparticles (Au NPs) attached at the end was modified over the surface of the quantum dots. The Au NPs could effectively quench the ECL signals of CZIS QDs via RET. Further, a significant amount of report DNA was generated through the action of a 3D DNA walker. When the report DNA opened H3-Au NPs, the hairpin structure experienced a conformational change to a linear shape, increasing the gap between the CZIS QDs and the Au NPs. Consequently, the localized surface plasmon resonance ECL (LSPR-ECL) effect replaced ECL resonance energy transfer (ECL-RET). Moreover, the report DNA was released following the addition of H4-Au NPs, resulting in the formation of Au dimers and a surface plasma-coupled ECL (SPC-ECL) effect that enhanced the ECL intensity to 6.97-fold. The integration of new ECL-RET and SPC-ECL biosensor accurately quantified miRNA-21 concentrations from 10-8 M to 10-16 M with a limit of detection (LOD) of 0.08 fM, as well as successfully applied to validate human serum samples.


Sujet(s)
Techniques de biocapteur , ADN , Techniques électrochimiques , Mesures de luminescence , microARN , Boîtes quantiques , Résonance plasmonique de surface , microARN/analyse , microARN/sang , Humains , Techniques électrochimiques/méthodes , Techniques de biocapteur/méthodes , ADN/composition chimique , Boîtes quantiques/composition chimique , Résonance plasmonique de surface/méthodes , Mesures de luminescence/méthodes , Or/composition chimique , Limite de détection , Transfert d'énergie , Nanoparticules métalliques/composition chimique
8.
Bioelectrochemistry ; 159: 108729, 2024 Oct.
Article de Anglais | MEDLINE | ID: mdl-38772096

RÉSUMÉ

This study explores the principles of resonance energy transfer and adsorption modulation using composites of Cu2S-MPA/NGODs. These composites can efficiently control the quenching process of electrochemiluminescence (ECL). Mercaptopropionic acid (MPA) was added during the synthesis of Cu2S-MPA to enhance its attachment to nitrogen-doped graphene quantum dots (NGODs). The UV absorption peaks of NGODs coincided with the emission peaks of luminol ECL, enabling resonance energy transfer and enhancing the quenching capability of Cu2S-MPA. Meanwhile, there is another quenching strategy. When the readily reducible Cu+ ions underwent partial reduction to Cu when they were bound to NGODs. This weakened the electrocatalytic effect on reactive oxygen species (ROS) and had a detrimental impact on electron transfer. Under optimal conditions, the immunosensor ECL intensity decreased linearly with the logarithm of carcinoembryonic antigen (CEA) concentration in the range of 0.00001-40 ng/mL, with a detection limit of 0.269 fg/mL. The sensor was effectively utilized for the identification of CEA in actual serum samples.


Sujet(s)
Antigène carcinoembryonnaire , Cuivre , Techniques électrochimiques , Graphite , Mesures de luminescence , Boîtes quantiques , Cuivre/composition chimique , Boîtes quantiques/composition chimique , Graphite/composition chimique , Antigène carcinoembryonnaire/sang , Antigène carcinoembryonnaire/analyse , Mesures de luminescence/méthodes , Adsorption , Techniques électrochimiques/méthodes , Limite de détection , Acide 3-sulfanyl-propionique/composition chimique , Humains , Transfert d'énergie , Techniques de biocapteur/méthodes , Sulfures
9.
Nat Commun ; 15(1): 4437, 2024 May 24.
Article de Anglais | MEDLINE | ID: mdl-38789432

RÉSUMÉ

Photosynthetic organisms have evolved an essential energy-dependent quenching (qE) mechanism to avoid any lethal damages caused by high light. While the triggering mechanism of qE has been well addressed, candidates for quenchers are often debated. This lack of understanding is because of the tremendous difficulty in measuring intact cells using transient absorption techniques. Here, we have conducted femtosecond pump-probe measurements to characterize this photophysical reaction using micro-sized cell fractions of the green alga Chlamydomonas reinhardtii that retain physiological qE function. Combined with kinetic modeling, we have demonstrated the presence of an ultrafast excitation energy transfer (EET) pathway from Chlorophyll a (Chl a) Qy to a carotenoid (car) S1 state, therefore proposing that this carotenoid, likely lutein1, is the quencher. This work has provided an easy-to-prepare qE active thylakoid membrane system for advanced spectroscopic studies and demonstrated that the energy dissipation pathway of qE is evolutionarily conserved from green algae to land plants.


Sujet(s)
Caroténoïdes , Chlamydomonas reinhardtii , Transfert d'énergie , Chlamydomonas reinhardtii/métabolisme , Caroténoïdes/métabolisme , Caroténoïdes/composition chimique , Thylacoïdes/métabolisme , Photosynthèse , Complexes collecteurs de lumière/métabolisme , Complexes collecteurs de lumière/composition chimique , Complexes collecteurs de lumière/génétique , Chlorophylle A/métabolisme , Chlorophylle A/composition chimique , Lumière , Cinétique , Chlorophylle/métabolisme , Chlamydomonas/métabolisme
10.
Biochim Biophys Acta Bioenerg ; 1865(3): 149049, 2024 Aug 01.
Article de Anglais | MEDLINE | ID: mdl-38801856

RÉSUMÉ

Phycobilisome (PBS) is a large pigment-protein complex in cyanobacteria and red algae responsible for capturing sunlight and transferring its energy to photosystems (PS). Spectroscopic and structural properties of various PBSs have been widely studied, however, the nature of so-called complex-complex interactions between PBS and PSs remains much less explored. In this work, we have investigated the function of a newly identified PBS linker protein, ApcG, some domain of which, together with a loop region (PB-loop in ApcE), is possibly located near the PBS-PS interface. Using Synechocystis sp. PCC 6803, we generated an ApcG deletion mutant and probed its deletion effect on the energetic coupling between PBS and photosystems. Steady-state and time-resolved spectroscopic characterization of the purified ΔApcG-PBS demonstrated that ApcG removal weakly affects the photophysical properties of PBS for which the spectroscopic properties of terminal energy emitters are comparable to those of PBS from wild-type strain. However, analysis of fluorescence decay imaging datasets reveals that ApcG deletion induces disruptions within the allophycocyanin (APC) core, resulting in the emergence (splitting) of two spectrally diverse subgroups with some short-lived APC. Profound spectroscopic changes of the whole ΔApcG mutant cell, however, emerge during state transition, a dynamic process of light scheme adaptation. The mutant cells in State I show a substantial increase in PBS-related fluorescence. On the other hand, global analysis of time-resolved fluorescence demonstrates that in general ApcG deletion does not alter or inhibit state transitions interpreted in terms of the changes of the PSII and PSI fluorescence emission intensity. The results revealed yet-to-be discovered mechanism of ApcG-docking induced excitation energy transfer regulation within PBS or to Photosystems.


Sujet(s)
Protéines bactériennes , Transfert d'énergie , Phycobilisomes , Synechocystis , Phycobilisomes/métabolisme , Phycobilisomes/composition chimique , Synechocystis/métabolisme , Synechocystis/génétique , Protéines bactériennes/métabolisme , Protéines bactériennes/composition chimique , Protéines bactériennes/génétique , Complexe protéique du photosystème I/métabolisme , Complexe protéique du photosystème I/composition chimique , Complexe protéique du photosystème I/génétique , Complexe protéique du photosystème II/métabolisme , Complexe protéique du photosystème II/composition chimique , Complexe protéique du photosystème II/génétique , Peptides/métabolisme , Peptides/composition chimique
11.
J Phys Chem Lett ; 15(22): 5838-5847, 2024 Jun 06.
Article de Anglais | MEDLINE | ID: mdl-38788163

RÉSUMÉ

The light-harvesting complexes (LHCs) of diatoms, specifically fucoxanthin-Chl a/c binding proteins (FCPs), exhibit structural and functional diversity, as highlighted by recent structural studies of photosystem II-FCP (PSII-FCPII) supercomplexes from different diatom species. The excitation dynamics of PSII-FCPII supercomplexes isolated from the diatom Thalassiosira pseudonana was explored using time-resolved fluorescence spectroscopy and two-dimensional electronic spectroscopy at room temperature and 77 K. Energy transfer between FCPII and PSII occurred remarkably fast (<5 ps), emphasizing the efficiency of FCPII as a light-harvesting antenna. The presence of long-wavelength chlorophylls may further help concentrate excitations in the core complex and increase the efficiency of light harvesting. Structure-based calculations reveal remarkably strong excitonic couplings between chlorophylls in the FCP antenna and between FCP and the PSII core antenna that are the basis for the rapid energy transfer.


Sujet(s)
Diatomées , Transfert d'énergie , Complexes collecteurs de lumière , Complexe protéique du photosystème II , Complexe protéique du photosystème II/composition chimique , Complexe protéique du photosystème II/métabolisme , Diatomées/composition chimique , Diatomées/métabolisme , Complexes collecteurs de lumière/composition chimique , Complexes collecteurs de lumière/métabolisme , Spectrométrie de fluorescence , Chlorophylle/composition chimique
12.
J Phys Chem B ; 128(21): 5201-5217, 2024 May 30.
Article de Anglais | MEDLINE | ID: mdl-38756003

RÉSUMÉ

In this study, the site energy fluctuations, energy transfer dynamics, and some spectroscopic properties of the minor light-harvesting complex CP24 in a membrane environment were determined. For this purpose, a 3 µs-long classical molecular dynamics simulation was performed for the CP24 complex. Furthermore, using the density functional tight binding/molecular mechanics molecular dynamics (DFTB/MM MD) approach, we performed excited state calculations for the chlorophyll a and chlorophyll b molecules in the complex starting from five different positions of the MD trajectory. During the extended simulations, we observed variations in the site energies of the different sets as a result of the fluctuating protein environment. In particular, a water coordination to Chl-b 608 occurred only after about 1 µs in the simulations, demonstrating dynamic changes in the environment of this pigment. From the classical and the DFTB/MM MD simulations, spectral densities and the (time-dependent) Hamiltonian of the complex were determined. Based on these results, three independent strongly coupled chlorophyll clusters were revealed within the complex. In addition, absorption and fluorescence spectra were determined together with the exciton relaxation dynamics, which reasonably well agrees with experimental time scales.


Sujet(s)
Chlorophylle , Complexes collecteurs de lumière , Simulation de dynamique moléculaire , Complexes collecteurs de lumière/composition chimique , Complexes collecteurs de lumière/métabolisme , Chlorophylle/composition chimique , Transfert d'énergie , Chlorophylle A/composition chimique , Théorie de la fonctionnelle de la densité , Spectrométrie de fluorescence
13.
Spectrochim Acta A Mol Biomol Spectrosc ; 317: 124399, 2024 Sep 05.
Article de Anglais | MEDLINE | ID: mdl-38718747

RÉSUMÉ

Herein, a novel sandwich electrochemiluminescence (ECL) aptasensor was developed based on the resonance energy transfer (RET) with iridium complex doped silicate nanoparticles (SiO2@Ir) as energy donor and gold nanoparticles modified TiVC MXene (AuNPs@TiVC) as energy acceptor. Strong anodic ECL signal of SiO2@Ir was obtained through both co-reactant pathway and annihilation pathway. Electrochemical results showed that SiO2@Ir has good electron transfer rate and large specific surface area to immobilize more aptamers. AuNPs@TiVC apparently quenched the ECL signal of SiO2@Ir due to the ECL resonance energy transfer between them. In the presence of kanamycin (KAN), a sandwich type sensor was formed with the aptamer probes as connecters between the donor and the acceptor, resulting in the decrease of ECL intensity. Under the optimal condition, KAN could be sensitively detected in the range of 0.1 pg/mL to 10 ng/mL with a low detection limit of 24.5 fg/mL. The proposed ECL system exhibited satisfactory analytical performance, which can realize the detection of various biological molecules by adopting suitable aptamer.


Sujet(s)
Techniques électrochimiques , Or , Iridium , Kanamycine , Limite de détection , Nanoparticules métalliques , Silice , Silice/composition chimique , Or/composition chimique , Nanoparticules métalliques/composition chimique , Iridium/composition chimique , Techniques électrochimiques/méthodes , Kanamycine/analyse , Mesures de luminescence/méthodes , Nanosphères/composition chimique , Aptamères nucléotidiques/composition chimique , Titane/composition chimique , Techniques de biocapteur/méthodes , Transfert d'énergie
14.
An Acad Bras Cienc ; 96(1): e20230327, 2024.
Article de Anglais | MEDLINE | ID: mdl-38597490

RÉSUMÉ

Aquatic macrophytes are the main autochthonous component of primary production in the Amazon Basin. Floating meadows of these plants support habitats with highly diverse animal communities. Fishes inhabiting these habitats have been assumed to use a broad range of food items and compose a particular food web. We employed carbon (δ13C) and nitrogen (δ15N) stable isotope analysis to draw the trophic structure of these habitats and to trace the energy flow by its trophic levels. Fishes and other animals from 18 independent macrophyte meadows of a floodplain lake of the Solimões River (Amazonia, Brazil) were analyzed. The food web of macrophyte meadows consists of four trophic levels above autotrophic sources. In general, primary consumers exhibited a broader range of food sources than the upper trophic levels. Some fish species depended on a large number of food sources and at the same time are consumed by several predators. The energy transfer from one trophic level to the next was then mainly accomplished by these species concentrating a high-energy flux and acting as hubs in the food web. The broad range of δ13C values observed indicates that the organisms living in the macrophyte meadows utilize a great diversity of autotrophic sources.


Sujet(s)
Prairie , Lacs , Animaux , Lacs/composition chimique , Écosystème , Chaine alimentaire , Poissons , Transfert d'énergie
15.
Anal Chim Acta ; 1303: 342508, 2024 May 15.
Article de Anglais | MEDLINE | ID: mdl-38609274

RÉSUMÉ

The anti-interference ability of biosensors is critical for detection in biological samples. Fluorescence-based sensors are subject to interference from self-luminescent substances in biological matrices. Therefore, phosphorescent sensors stand out among biosensors due to their lack of self-luminescence background. In this study, a phosphorescent sensor was constructed, which can accurately detect thymidine kinase 1 (TK1) mRNA in biological samples and avoid autofluorescence interference. When there is no target, polydopamine (PDA) is used as the phosphorescence resonance energy transfer (PRET) acceptor to quench the phosphorescence of the persistently luminescent (PL) nanomaterial. When there is a target, the DNA modified by the PL nanomaterial is replaced by the hairpin H and removed away from the PDA, resulting in a rebound in phosphorescence. The phosphorescent sensor exhibits a good linear relationship in the TK1 mRNA concentration range of 0-200 nM, and the detection limit was 1.74 nM. The sensor fabricated in this study can effectively avoid interference from spontaneous fluorescence in complex biological samples, and sensitively and precisely detect TK1 mRNA in serum samples, providing a powerful tool to more accurately detect biomarkers in biological samples.


Sujet(s)
Thymidine kinase , Transfert d'énergie , ARN messager/génétique , Thymidine kinase/génétique , Mesures de luminescence
16.
Photochem Photobiol Sci ; 23(5): 871-879, 2024 May.
Article de Anglais | MEDLINE | ID: mdl-38564166

RÉSUMÉ

Exchange of B800 bacteriochlorophyll (BChl) a in light-harvesting complex 2 (LH2) is promising for a better understanding of the mechanism on intracomplex excitation energy transfer of this protein. Structural and spectroscopic properties of LH2 lacking B800 BChl a (B800-depleted LH2), which is an important intermediate protein in the B800 exchange, will be useful to tackle the energy transfer mechanism in LH2 by the B800 exchange strategy. In this study, we report a unique spectral change of B800-depleted LH2, in which the Qy absorption band of B800 BChl a is automatically recovered under neutral pH conditions. This spectral change was facilitated by factors for destabilization of LH2, namely, a detergent, lauryl dimethylamine N-oxide, and an increase in temperature. Spectral analyses in the preparation of an LH2 variant denoted as B800-recovered LH2 indicated that most BChl a that was released by decomposition of part of B800-depleted LH2 was a source of the production of B800-recovered LH2. Characterization of purified B800-recovered LH2 demonstrated that its spectroscopic and structural features was quite similar to those of native LH2. The current results indicate that the recovery of the B800 Qy band of B800-depleted LH2 originates from the combination of decomposition of part of B800-depleted LH2 and in situ reconstitution of BChl a into the B800 binding pockets of residual B800-depleted LH2, resulting in the formation of stable B800-recovered LH2.


Sujet(s)
Bactériochlorophylle A , Complexes collecteurs de lumière , Complexes collecteurs de lumière/composition chimique , Complexes collecteurs de lumière/métabolisme , Concentration en ions d'hydrogène , Bactériochlorophylle A/composition chimique , Bactériochlorophylle A/métabolisme , Protéines bactériennes/composition chimique , Protéines bactériennes/métabolisme , Température , Diméthylamines/composition chimique , Transfert d'énergie
17.
Biosystems ; 240: 105213, 2024 Jun.
Article de Anglais | MEDLINE | ID: mdl-38616011

RÉSUMÉ

The central problem in transduction is to explain how the energy caught from sunlight by chloroplasts becomes biological work. Or to express it in different terms: how does the energy remain trapped in the biological network and not get lost through thermalization into the environment? The pathway consists of an immensely large number of steps crossing hierarchical levels - some upwards, to larger assemblies, others downwards into energy rich molecules - before fuelling an action potential or a contracting cell. Accepting the assumption that steps are executed by protein domains, we expect that transduction mechanisms are the result of conformational changes, which in turn involve rearrangements of the bonds responsible for the protein fold. But why are these essential changes so difficult to detect? In this presentation, the metabolic pathway is viewed as equivalent to an energy conduit composed of equally sized units - the protein domains - rather than a row of catalysts. The flow of energy through them occurs by the same mechanism as through the cytoplasmic medium (water). This mechanism is based on the cluster-wave model of water structure, which successfully explains the transfer of energy through the liquid medium responsible for the build up of osmotic pressure. The analogy to the line of balls called "Newton's cradle" provides a useful comparison, since there the transfer is also invisible to us because the intermediate balls are motionless. It is further proposed that the spatial arrangements of the H-bonds of the α and ß secondary structures support wave motion, with the linear and lateral forms of the groups of bonds belonging to the helices and sheets executing the longitudinal and transverse modes, respectively.


Sujet(s)
Transfert d'énergie , Transfert d'énergie/physiologie , Modèles biologiques , Métabolisme énergétique/physiologie , Humains , Eau/métabolisme
18.
Endocrinology ; 165(6)2024 Apr 29.
Article de Anglais | MEDLINE | ID: mdl-38679471

RÉSUMÉ

The glycoprotein receptors, members of the large G protein-coupled receptor family, are characterized by a large extracellular domains responsible for binding their glycoprotein hormones. Hormone-receptor interactions are traditionally analyzed by ligand-binding assays, most often using radiolabeling but also by thermal shift assays. Despite their high sensitivity, these assays require appropriate laboratory conditions and, often, purified plasma cell membranes, which do not provide information on receptor localization or activity because the assays typically focus on measuring binding only. Here, we apply bioluminescence resonance energy transfer in living cells to determine hormone-receptor interactions between a Gaussia luciferase (Gluc)-luteinizing hormone/chorionic gonadotropin receptor (LHCGR) fusion and its ligands (human chorionic gonadotropin or LH) fused to the enhanced green fluorescent protein. The Gluc-LHCGR, as well as other Gluc-G protein-coupled receptors such as the somatostatin and the C-X-C motif chemokine receptors, is expressed on the plasma membrane, where luminescence activity is equal to membrane receptor expression, and is fully functional. The chimeric enhanced green fluorescent protein-ligands are properly secreted from cells and able to bind and activate the wild-type LHCGR as well as the Gluc-LHCGR. Finally, bioluminescence resonance energy transfer was used to determine the interactions between clinically relevant mutations of the hormones and the LHCGR that show that this bioassay provides a fast and effective, safe, and cost-efficient tool to assist the molecular characterization of mutations in either the receptor or ligand and that it is compatible with downstream cellular assays to determine receptor activation/function.


Sujet(s)
Protéines à fluorescence verte , Liaison aux protéines , Humains , Protéines à fluorescence verte/métabolisme , Protéines à fluorescence verte/génétique , Récepteur LH/métabolisme , Récepteur LH/génétique , Luciferases/métabolisme , Luciferases/génétique , Animaux , Techniques de transfert d'énergie par résonance de bioluminescence/méthodes , Gonadotrophine chorionique/métabolisme , Cellules HEK293 , Protéines de fusion recombinantes/métabolisme , Protéines de fusion recombinantes/génétique , Transfert d'énergie , Glycoprotéines/métabolisme , Mesures de luminescence/méthodes
19.
Bioinspir Biomim ; 19(4)2024 May 08.
Article de Anglais | MEDLINE | ID: mdl-38663427

RÉSUMÉ

Inspired by the vibrations of aquatic plants such as seaweed in the unsteady flow fields generated by free-surface waves, we investigate a novel device based on piezoelectric plates to harvest energy from oscillatory cross flows. Towards this end, numerical studies are conducted using a flow-structure-electric interaction model to understand the underlying physical mechanisms involved in the dynamics and energy harvesting performance of one or a pair of piezoelectric plates in an oscillatory cross flow. In a single-plate configuration, both periodic and irregular responses have been observed depending on parameters such as normalized plate stiffness and Keulegan-Carpenter number. Large power harvesting is achieved with the excitation of natural modes. Besides, when the time scale of the motion and the intrinsic time scale of the circuit are close to each other the power extraction is enhanced. In a two-plate configuration with tandem formation, the hydrodynamic interaction between the two plates can induce irregularity in the response. In terms of energy harvesting, two counteracting mechanisms have been identified, shielding and energy recovery. The shielding effect reduces plate motion and energy harvesting, whereas with the energy recovery effect one plate is able to recovery energy from the wake of another for performance enhancement. The competition between these mechanisms leads to constructive or destructive interactions between the two plates. These results suggest that for better performance the system should be excited at its natural period, which should be close to the intrinsic time scale of the circuit. Moreover, using a pair of plates in a tandem formation can further improve the energy harvesting capacity when conditions for constructive interaction are satisfied.


Sujet(s)
Algue marine , Algue marine/physiologie , Conception d'appareillage , Vibration , Hydrodynamique , Biomimétique/instrumentation , Simulation numérique , Rhéologie , Transfert d'énergie
20.
Spectrochim Acta A Mol Biomol Spectrosc ; 316: 124338, 2024 Aug 05.
Article de Anglais | MEDLINE | ID: mdl-38678839

RÉSUMÉ

In this work, the interaction between different chloro-substituted phenylurea herbicides (diuron (DIU) and chlortoluron (CHL)) and BSA were investigated and compared at three different temperatures (283 K, 298 K and 310 K) adopting UV-vis, fluorescence, and circular dichroism spectra. The quenching mechanism of the interaction was also proposed. The energy transfer between BSA and DIU/CHL was investigated. The binding sites of DIU/CHL and BSA and the variations in the microenvironment of amino acid residues were studied. The changes of the secondary structure of BSA were analyzed. The results indicate that both DIU and CHL can significantly interact with BSA, and the degree of the interaction between DIU/CHL and BSA increases with the increase of the DIU/CHL concentration. The fluorescence quenching of BSA by DIU/CHL results from the combination of static and dynamic quenching. The DIU/CHL has a weak to moderate binding affinity for BSA, and the binding stoichiometry is 1:1. Their binding processes are spontaneous, and hydrophobic interaction, hydrogen bonds and van der Waals forces are the main interaction forces. DIU/CHL has higher affinity for subdomain IIA (Site I) of BSA than subdomain IIIA (Site II), and also interacts with tryptophan more than tyrosine residues. The energy transfer can occur from BSA to DIU/CHL. By comparison, the strength of the interaction of DIU-BSA is always greater than that of CHL-BSA, and DIU can destroy the secondary structure of BSA molecules greater than CHL and thus the potential toxicity of DIU is higher due to DIU with more chlorine substituents than CHL. It is expected that this study on the interaction can offer in-depth insights into the toxicity of phenylurea herbicides, as well as their impact on human and animal health at the molecular level.


Sujet(s)
Herbicides , Sérumalbumine bovine , Spectrométrie de fluorescence , Sérumalbumine bovine/composition chimique , Sérumalbumine bovine/métabolisme , Herbicides/composition chimique , Herbicides/métabolisme , Animaux , Bovins , Diuron/composition chimique , Diuron/métabolisme , Spectrophotométrie UV , Sites de fixation , Liaison aux protéines , Dichroïsme circulaire , Transfert d'énergie , Thermodynamique , Liaison hydrogène
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