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1.
Curr Genet ; 70(1): 14, 2024 Aug 16.
Article de Anglais | MEDLINE | ID: mdl-39150461

RÉSUMÉ

In mammals, enteric salmonellas can use tetrathionate (ttr), formed as a by-product from the inflammatory process in the intestine, as electron acceptor in anaerobic respiration, and it can fuel its energy metabolism by degrading the microbial fermentation product 1,2-propanediol. However, recent studies have shown that this mechanism is not important for Salmonella infection in the intestine of poultry, while it prolongs the persistence of Salmonella at systemic sites in this species. In the current study, we show that ΔttrApduA strains of Salmonella enterica have lower net survival within chicken-derived HD-11 macrophages, as CFU was only 2.3% (S. Enteritidis ΔttrApduA), 2.3% (S. Heidelberg ΔttrApduA), and 3.0% (S. Typhimurium ΔttrApduA) compared to wild-type strains after 24 h inside HD-11 macrophage cells. The difference was not related to increased lysis of macrophages, and deletion of ttrA and pduA did not impair the ability of the strains to grow anaerobically. Further studies are indicated to determine the reason why Salmonella ΔttrApduA strains survive less well inside macrophage cell lines.


Sujet(s)
Poulets , Macrophages , Salmonella enterica , Macrophages/microbiologie , Macrophages/immunologie , Macrophages/métabolisme , Animaux , Poulets/microbiologie , Salmonella enterica/génétique , Lignée cellulaire , Délétion de gène , Protéines bactériennes/génétique , Protéines bactériennes/métabolisme , Salmonelloses animales/microbiologie , Salmonelloses animales/immunologie , Viabilité microbienne/génétique
2.
BMC Genomics ; 20(1): 663, 2019 Aug 20.
Article de Anglais | MEDLINE | ID: mdl-31429699

RÉSUMÉ

BACKGROUND: Iron is an essential micronutrient for the growth and development of virtually all living organisms, playing a pivotal role in the proliferative capability of many bacterial pathogens. The impact that the bioavailability of iron has on the transcriptional response of bacterial species in the CMNR group has been widely reported for some members of the group, but it hasn't yet been as deeply explored in Corynebacterium pseudotuberculosis. Here we describe for the first time a comprehensive RNA-seq whole transcriptome analysis of the T1 wild-type and the Cp13 mutant strains of C. pseudotuberculosis under iron restriction. The Cp13 mutant strain was generated by transposition mutagenesis of the ciuA gene, which encodes a surface siderophore-binding protein involved in the acquisition of iron. Iron-regulated acquisition systems are crucial for the pathogenesis of bacteria and are relevant targets to the design of new effective therapeutic approaches. RESULTS: Transcriptome analyses showed differential expression in 77 genes within the wild-type parental T1 strain and 59 genes in Cp13 mutant under iron restriction. Twenty-five of these genes had similar expression patterns in both strains, including up-regulated genes homologous to the hemin uptake hmu locus and two distinct operons encoding proteins structurally like hemin and Hb-binding surface proteins of C. diphtheriae, which were remarkably expressed at higher levels in the Cp13 mutant than in the T1 wild-type strain. These hemin transport protein genes were found to be located within genomic islands associated with known virulent factors. Down-regulated genes encoding iron and heme-containing components of the respiratory chain (including ctaCEF and qcrCAB genes) and up-regulated known iron/DtxR-regulated transcription factors, namely ripA and hrrA, were also identified differentially expressed in both strains under iron restriction. CONCLUSION: Based on our results, it can be deduced that the transcriptional response of C. pseudotuberculosis under iron restriction involves the control of intracellular utilization of iron and the up-regulation of hemin acquisition systems. These findings provide a comprehensive analysis of the transcriptional response of C. pseudotuberculosis, adding important understanding of the gene regulatory adaptation of this pathogen and revealing target genes that can aid the development of effective therapeutic strategies against this important pathogen.


Sujet(s)
Corynebacterium pseudotuberculosis/génétique , Corynebacterium pseudotuberculosis/métabolisme , Analyse de profil d'expression de gènes , Carences en fer , Corynebacterium pseudotuberculosis/croissance et développement , Corynebacterium pseudotuberculosis/physiologie , Réseaux de régulation génique , Ilots génomiques/génétique , Viabilité microbienne/génétique , Mutation , Transcription génétique
3.
Microbes Infect ; 21(8-9): 377-385, 2019.
Article de Anglais | MEDLINE | ID: mdl-30923000

RÉSUMÉ

Several pathogens including Gram-negative bacteria hijack complement regulators to escape host's innate response. Pathogenic Leptospira species bind Factor H, C4b binding protein and vitronectin from the complement system. We evaluated the ability of low passage (LP) and culture-attenuated (CA) pathogenic strains of Leptospira, to bind Factor H. We used LOCaS46 (Leptospira interrogans sv Canicola), LOVe30 (L. interrogans sv Icterohaemorrhagiae) and MOCA45 (L. santarosai sv Tarassovi), and ten high passage strains of Leptospira [used in the microscopic agglutination test (MAT)]. Afterwards, we assessed their survival in normal human serum (NHS). Interestingly, the ability in binding Factor H was higher for LOCaS46 and LOVe30 LP strains, than for the respective CA strains suggesting that the ability of evading the alternative complement pathway is lost after culture attenuation. Accordingly, the level of mRNA expression of the Factor H binding proteins, LigA, LigB and Lsa23 was higher in these LP strains than in the corresponding CA strains. Unexpectedly, no difference in Factor H binding and surviving was observed between LP and CA MOCA45 strains. The high passage MAT-reference strains showed variation in Factor H binding ability, but, in most cases, the ability for capturing Factor H by Leptospira strains correlated with their survival in NHS.


Sujet(s)
Protéines bactériennes/génétique , Protéines bactériennes/métabolisme , Protéines de transport/métabolisme , Régulation de l'expression des gènes bactériens , Leptospira/immunologie , Leptospira/pathogénicité , Protéines de transport/génétique , Facteur H du complément/métabolisme , Humains , Échappement immunitaire/génétique , Leptospira/génétique , Leptospirose/microbiologie , Viabilité microbienne/génétique , Viabilité microbienne/immunologie , Liaison aux protéines , ARN messager/génétique
4.
Microbiology (Reading) ; 164(12): 1567-1582, 2018 12.
Article de Anglais | MEDLINE | ID: mdl-30311878

RÉSUMÉ

Mycobacterium smegmatis is intrinsically resistant to thiacetazone, an anti-tubercular thiourea; however we report here that it causes a mild inhibition in growth in liquid medium. Since mycolic acid biosynthesis was affected, we cloned and expressed Mycobacterium smegmatis mycolic acid methyltransferases, postulated as targets for thiacetazone in other mycobacterial species. During this analysis we identified MSMEG_1350 as the methyltransferase involved in epoxy mycolic acid synthesis since its deletion led to their total loss. Phenotypic characterization of the mutant strain showed colony morphology alterations at all temperatures, reduced growth and a slightly increased susceptibility to SDS, lipophilic and large hydrophilic drugs at 20 °C with little effect at 37 °C. No changes were detected between parental and mutant strains in biofilm formation, sliding motility or sedimentation rate. Intriguingly, we found that several mycobacteriophages severely decreased their ability to form plaques in the mutant strain. Taken together our results prove that, in spite of being a minor component of the mycolic acid pool, epoxy-mycolates are required for a proper assembly and functioning of the cell envelope. Further studies are warranted to decipher the role of epoxy-mycolates in the M. smegmatis cell envelope.


Sujet(s)
Protéines bactériennes/génétique , Methyltransferases/génétique , Mycobactériophages/physiologie , Mycobacterium smegmatis/enzymologie , Mycobacterium smegmatis/virologie , Acides mycoliques/métabolisme , Antibactériens/pharmacologie , Protéines bactériennes/métabolisme , Paroi cellulaire/métabolisme , Basse température , Methyltransferases/métabolisme , Viabilité microbienne/effets des médicaments et des substances chimiques , Viabilité microbienne/génétique , Mycobacterium smegmatis/physiologie , Délétion de séquence
5.
Lasers Med Sci ; 33(7): 1447-1454, 2018 Sep.
Article de Anglais | MEDLINE | ID: mdl-29589176

RÉSUMÉ

The objective of this study was to evaluate the effects of photodynamic inactivation (PDI) on Candida albicans biofilms, evaluating its effects on gene expression of ALS3, HWP1, BCR1, TEC1, CPH1, and EFG1 by yeast. Three samples of C. albicans were used in this study: a clinical sample from a patient with HIV (39S), a clinical sample from a patient with denture stomatitis lesion (Ca30), and a standard strain ATCC 18804. The quantification of gene expression was related to the production of those genes in the samples referred above using quantitative polymerase chain reaction (qPCR) assay in real time. The photosensitizer methylene blue at 300 uM and erythrosine at 400 uM, sensitized with low-power laser (visible red, 660 nm) and green LED (532 nm), respectively, were used for PDI. Four groups of each sample and PDI protocol were evaluated: (a) P+L+: sensitization with the photosensitizer and irradiation with light, (b) P+L-: only treatment with the photosensitizer, (c) P-L+: only irradiation with light, and (d) P-L-: without sensitization with the dye and absence of light. The results were analyzed by t test, with a significance level of 5%. The photodynamic inactivation was able to reduce the expression of all genes for both treatments, laser and LED. The fold-decrease for the genes ALS3, HWP1, BCR1, TEC1, CPH1, and EFG1 were 0.73, 0.39, 0.77, 0.71, 0.67, and 0.60 for laser, respectively, and 0.66, 0.61, .050, 0.43, 0.54, and 0.66 for LED, respectively. It could be concluded that PDI showed a reduction in the expression of C. albicans genes, suggesting its virulence decrease.


Sujet(s)
Biofilms/effets des médicaments et des substances chimiques , Candida albicans/génétique , Candida albicans/physiologie , Protéines fongiques/génétique , Régulation de l'expression des gènes fongiques/effets des médicaments et des substances chimiques , Gènes fongiques , Viabilité microbienne/génétique , Photosensibilisants/pharmacologie , Candida albicans/effets des médicaments et des substances chimiques , Érythrosine/pharmacologie , Protéines fongiques/métabolisme , Humains , Lasers , Bleu de méthylène/pharmacologie , Viabilité microbienne/effets des médicaments et des substances chimiques , Normes de référence
6.
BMC Genomics ; 19(1): 152, 2018 02 20.
Article de Anglais | MEDLINE | ID: mdl-29463214

RÉSUMÉ

BACKGROUND: Peptidases (EC 3.4) consist of a large group of hydrolytic enzymes that catalyze the hydrolysis of proteins accounting for approximately 65% of the total worldwide enzyme production. Peptidases from thermophilic fungi have adaptations to high temperature that makes them adequate for biotechnological application. In the present study, we profiled the genomes of heat-tolerant fungi and phylogenetically related mesophilic species for genes encoding for peptidases and their putative adaptations for thermostability. RESULTS: We generated an extensive catalogue of these enzymes ranging from 241 to 820 peptidase genes in the genomes of 23 fungi. Thermophilic species presented the smallest number of peptidases encoding genes in relation to mesophilic species, and the peptidases families with a greater number of genes were the most affected. We observed differences in peptidases in thermophilic species in comparison to mesophilic counterparts, at (i) the genome level: a great reduction in the number of peptidases encoding genes that harbored a higher number of copies; (ii) in the primary protein structure: shifts in proportion of single or groups of amino acids; and (iii) in the three-dimensional structure: reduction in the number of internal cavities. Similar results were reported for extremely thermophilic proteins, but here we show for the first time that several changes also occurred on the moderate thermophilic enzymes of fungi. In regards to the amino acids composition, peptidases from thermophilic species in relation to the mesophilic ones, contained a larger proportion of Ala, Glu, Gly, Pro, Arg and Val residues and a lower number of Cys, His, Ile, Lys, Met, Asn, Gln, Ser, Thr and Trp residues (P < 0.05). Moreover, we observed an increase in the proportion of hydrophobic and charged amino acids and a decrease in polar amino acids. CONCLUSIONS: Although thermophilic fungi present less genes encoding for peptidases, these have adaptations that could play a role in thermal resistance from genome to protein structure level.


Sujet(s)
Adaptation biologique/génétique , Champignons/physiologie , Génome fongique , Réaction de choc thermique/génétique , Peptide hydrolases/génétique , Biologie informatique/méthodes , Bases de données d'acides nucléiques , Champignons/classification , Champignons/génétique , Génomique/méthodes , Température élevée , Viabilité microbienne/génétique , Phylogenèse
7.
Infect Immun ; 86(4)2018 04.
Article de Anglais | MEDLINE | ID: mdl-29339459

RÉSUMÉ

Streptococcus sanguinis is a pioneer species of teeth and a common opportunistic pathogen of infective endocarditis. In this study, we identified a two-component system, S. sanguinis SptRS (SptRS Ss ), affecting S. sanguinis survival in saliva and biofilm formation. Isogenic mutants of sptRSs (SKsptR) and sptSSs (SKsptS) showed reduced cell counts in ex vivo assays of viability in saliva compared to those of parent strain SK36 and complemented mutants. Reduced counts of the mutants in saliva were associated with reduced growth rates in nutrient-poor medium (RPMI) and increased susceptibility to the deposition of C3b and the membrane attach complex (MAC) of the complement system, a defense component of saliva and serum. Conversely, sptRSs and sptSSs mutants showed increased biofilm formation associated with higher levels of production of H2O2 and extracellular DNA. Reverse transcription-quantitative PCR (RT-qPCR) comparisons of strains indicated a global role of SptRS Ss in repressing genes for H2O2 production (2.5- to 15-fold upregulation of spxB, spxR, vicR, tpk, and ackA in sptRSs and sptSSs mutants), biofilm formation, and/or evasion of host immunity (2.1- to 11.4-fold upregulation of srtA, pcsB, cwdP, iga, and nt5e). Compatible with the homology of SptR Ss with AraC-type regulators, duplicate to multiple conserved repeats were identified in 1,000-bp regulatory regions of downstream genes, suggesting that SptR Ss regulates transcription by DNA looping. Significant transcriptional changes in the regulatory genes vicR, spxR, comE, comX, and mecA in the sptRSs and sptSSs mutants further indicated that SptRS Ss is part of a regulatory network that coordinates cell wall homeostasis, H2O2 production, and competence. This study reveals that SptRS Ss is involved in the regulation of crucial functions for S. sanguinis persistence in the oral cavity.


Sujet(s)
Biofilms , Salive/microbiologie , Infections à streptocoques/microbiologie , Streptococcus sanguis/physiologie , Protéines bactériennes/génétique , Protéines du système du complément/immunologie , Régulation de l'expression des gènes bactériens , Locus génétiques , Génome bactérien , Génomique/méthodes , Interactions hôte-pathogène/immunologie , Peroxyde d'hydrogène/métabolisme , Viabilité microbienne/génétique , Stress oxydatif , Délétion de séquence , Infections à streptocoques/immunologie , Infections à streptocoques/métabolisme
8.
Biochem Biophys Res Commun ; 485(4): 814-819, 2017 04 15.
Article de Anglais | MEDLINE | ID: mdl-28257847

RÉSUMÉ

An early step of target validation in antimicrobial drug discovery is to prove that a gene coding for a putative target is essential for pathogen's viability. However, little attention has been paid to demonstrate the causal links between gene essentiality and a particular protein function that will be the focus of a drug discovery effort. This should be considered an important step in target validation since a growing number of proteins are found to exhibit multiple and unrelated tasks. Here, we show that the Mycobacterium tuberculosis (Mtb) folB gene is essential and that this essentiality depends on the dihydroneopterin aldolase/epimerase activities of its protein product, the FolB protein from the folate biosynthesis pathway. The wild-type (WT) MtFolB and point mutants K99A and Y54F were cloned, expressed, purified and monitored for the aldolase, epimerase and oxygenase activities using HPLC. In contrast to the WT MtFolB, both mutants have neither aldolase nor epimerase activities in the conditions assayed. We then performed gene knockout experiments and showed that folB gene is essential for Mtb survival under the conditions tested. Moreover, only the WT folB sequence could be used as a rescue copy in gene complementation studies. When the sequences of mutants K99A or Y54F were used for complementation, no viable colonies were obtained, indicating that aldolase and/or epimerase activities are crucial for Mtb survival. These results provide a solid basis for further work aiming to develop new anti-TB agents acting as inhibitors of the aldolase/epimerase activities of MtFolB.


Sujet(s)
Aldehyde-lyases/antagonistes et inhibiteurs , Antituberculeux/pharmacologie , Protéines bactériennes/antagonistes et inhibiteurs , Découverte de médicament/méthodes , Mycobacterium tuberculosis/effets des médicaments et des substances chimiques , Aldehyde-lyases/génétique , Aldehyde-lyases/métabolisme , Protéines bactériennes/génétique , Protéines bactériennes/métabolisme , Biocatalyse , Chromatographie en phase liquide à haute performance , Gènes essentiels/génétique , Test de complémentation/méthodes , Humains , Viabilité microbienne/effets des médicaments et des substances chimiques , Viabilité microbienne/génétique , Thérapie moléculaire ciblée/méthodes , Mutation faux-sens , Mycobacterium tuberculosis/enzymologie , Mycobacterium tuberculosis/génétique , Reproductibilité des résultats , Spécificité du substrat , Spectrométrie de masse en tandem , Tuberculose/traitement médicamenteux , Tuberculose/microbiologie
9.
Bioelectromagnetics ; 37(4): 234-43, 2016 May.
Article de Anglais | MEDLINE | ID: mdl-27018544

RÉSUMÉ

Direct electric current has several therapeutic uses such as antibacterial and antiprotozoal action, tissues scarring and regeneration, as well as tumor treatment. This method has shown promising results in vivo and in vitro, with significant efficacy and almost no side effects. Considering lack of studies regarding direct electric current mutagenic and/or genotoxic effects, the present work evaluated both aspects by using five different bacterial experimental assays: survival of repair-deficient mutants, Salmonella-histidine reversion mutagenesis (Ames test), forward mutations to rifampicin resistance, phage reactivation, and lysogenic induction. In these experimental conditions, cells were submitted to an approach that allows evaluation of anodic, cathodic, and electro-ionic effects generated by 2 mA of direct electric current, with doses ranging from 0.36 to 3.60 Coulombs. Our results showed these doses did not induce mutagenic or genotoxic effects.


Sujet(s)
Électricité/effets indésirables , Escherichia coli/génétique , Tests de mutagénicité , Salmonella typhimurium/génétique , Bactériophages/physiologie , Résistance bactérienne aux médicaments/génétique , Escherichia coli/physiologie , Escherichia coli/virologie , Viabilité microbienne/génétique , Salmonella typhimurium/physiologie , Salmonella typhimurium/virologie
10.
Biomed Res Int ; 2014: 809585, 2014.
Article de Anglais | MEDLINE | ID: mdl-24967408

RÉSUMÉ

The lprG-p55 operon of Mycobacterium tuberculosis and Mycobacterium bovis is involved in the transport of toxic compounds. P55 is an efflux pump that provides resistance to several drugs, while LprG is a lipoprotein that modulates the host's immune response against mycobacteria. The knockout mutation of this operon severely reduces the replication of both mycobacterial species during infection in mice and increases susceptibility to toxic compounds. In order to gain insight into the function of LprG in the Mycobacterium avium complex, in this study, we assayed the effect of the deletion of lprG gene in the D4ER strain of Mycobacterium avium subsp. avium. The replacement of lprG gene with a hygromycin cassette caused a polar effect on the expression of p55. Also, a twofold decrease in ethidium bromide susceptibility was observed and the resistance to the antibiotics rifampicin, amikacin, linezolid, and rifabutin was impaired in the mutant strain. In addition, the mutation decreased the virulence of the bacteria in macrophages in vitro and in a mice model in vivo. These findings clearly indicate that functional LprG and P55 are necessary for the correct transport of toxic compounds and for the survival of MAA in vitro and in vivo.


Sujet(s)
Antituberculeux , Protéines bactériennes , Résistance bactérienne aux médicaments , Lipoprotéines , Souris de lignée BALB C , Mycobacterium avium , Opéron , Facteurs de virulence , Animaux , Antituberculeux/pharmacocinétique , Antituberculeux/pharmacologie , Protéines bactériennes/génétique , Protéines bactériennes/métabolisme , Transport biologique actif/effets des médicaments et des substances chimiques , Transport biologique actif/génétique , Résistance bactérienne aux médicaments/effets des médicaments et des substances chimiques , Résistance bactérienne aux médicaments/génétique , Lipoprotéines/génétique , Lipoprotéines/métabolisme , Souris , Viabilité microbienne/effets des médicaments et des substances chimiques , Viabilité microbienne/génétique , Mycobacterium avium/génétique , Mycobacterium avium/métabolisme , Mycobacterium avium/pathogénicité , Tuberculose/traitement médicamenteux , Tuberculose/génétique , Tuberculose/métabolisme , Tuberculose/médecine vétérinaire , Facteurs de virulence/génétique , Facteurs de virulence/métabolisme
11.
Vet Microbiol ; 172(1-2): 279-84, 2014 Aug 06.
Article de Anglais | MEDLINE | ID: mdl-24928771

RÉSUMÉ

One of the properties of bacteria is their capacity to acquire large fragments of genomic DNA from other bacteria or to loose important parts of their own genome. Such fragments include genomic islands (GIs); nine GIs are present in Brucella, including genomic island 3 (GI-3), present in B. abortus, B. melitensis and B. ovis. The GI-3 have 29 open reading frames (ORFs) most of them with unknown function. Within the GI-3, the ORFs BAB1_0267 encodes a hypothetical protein sharing a SH3 domain and BAB1_270 a zinc-dependent metallopeptidase. We have obtained deletion mutants for BAB1_0267 and BAB1_0270 ORFs present within GI-3, which have been named the Δ0267 and Δ0270, respectively; in both cases the mutation did not affect the growth of bacteria. Both mutants were evaluated with respect to their growth rates, their ability to invade and replicate in the non-professional and professional phagocytes, HeLa and J774.A1 cells, respectively. Their persistence in the spleens of mice was also evaluated. The mutants efficiently invaded HeLa and J774.A1 cells but both mutants showed a decreased intracellular survival in macrophages and HeLa cells 72 and 96 h post-infection, respectively, and were non-detected in J774.A1 cells 120 h post infection. With respect to in vivo persistence Δ0267 was detected through the fourth week while Δ0270 decreased at 7 days disappearing the second week. Our results indicated that deletion of BAB1_0267 and BAB1_270 are necessary to establish an optimal infectious process in B. abortus 2308, having more effect the deletion of ORF BAB1_0270. Therefore these ORFs, principally BAB1_0270 are important virulent of B. abortus.


Sujet(s)
Brucella abortus/pathogénicité , Ilots génomiques , Cadres ouverts de lecture , Facteurs de virulence/génétique , Animaux , Brucella abortus/génétique , Brucellose/microbiologie , Expression des gènes , Test de complémentation , Cellules HeLa , Humains , Macrophages/microbiologie , Souris , Souris de lignée BALB C , Viabilité microbienne/génétique , Structure tertiaire des protéines , Délétion de séquence , Rate/microbiologie , Virulence , Facteurs de virulence/métabolisme
12.
Mutat Res ; 765: 40-7, 2014 Jul.
Article de Anglais | MEDLINE | ID: mdl-24632511

RÉSUMÉ

Alkylating agents are used in anti-tumor chemotherapy because they bind covalently to DNA and generate adducts that may lead to cell death. Bifunctional (HN2) and monofunctional (HN1) nitrogen are two such agents, and HN2 was the first drug successfully employed in anti-leukemia chemotherapy. Currently, HN2 is used either alone or combined with other drugs to treat Hodgkin's disease. It is well known that several crosslinking agents require metabolic activation via reactive oxygen species (ROS) to exert their lethal effects. The objective of this work was therefore to determine whether the abovementioned mustards would also require metabolic activation to exert lethal action against Escherichia coli. For this purpose, we measured survival following exposure to HN2 in E. coli strains that were deficient in nucleotide excision repair (uvrA NER mutant), base excision repair (xthA nfo nth fpg BER mutant) or superoxide dismutase (sodAB mutant) activity. We also performed the same experiments in cells pretreated with an iron chelator (2,2'-dipyridyl, DIP). The NER and BER mutants were only sensitive to HN2 treatment (survival rates similar to those of the wild-type were achieved with 5-fold lower HN2 doses). However, wild-type and sodAB strains were not sensitive to treatment with HN2. In all tested strains, survival dropped by 2.5-fold following pretreatment with DIP compared to treatment with HN2 alone. Furthermore, DIP treatment increased ROS generation in both wild type and sodAB-deficient strains. Based on these data and on the survival of the SOD-deficient strain, we suggest that the increased production of ROS caused by Fe(2+) chelation may potentiate the lethal effects of HN2 but not HN1. This potentiation may arise as a consequence of enhancement in the number of or modification of the type of lesions formed. No sensitization was observed for the non-crosslinkable HN2 analog, HN1.


Sujet(s)
2,2'-Bipyridine/pharmacologie , Antinéoplasiques alcoylants/pharmacologie , Chélateurs/pharmacologie , Escherichia coli K12/métabolisme , Protéines Escherichia coli/métabolisme , Chlorméthine/pharmacologie , Escherichia coli K12/génétique , Protéines Escherichia coli/génétique , Viabilité microbienne/effets des médicaments et des substances chimiques , Viabilité microbienne/génétique , Mutation , Espèces réactives de l'oxygène/métabolisme
13.
PLoS One ; 5(2): e9394, 2010 Feb 24.
Article de Anglais | MEDLINE | ID: mdl-20195364

RÉSUMÉ

A bioinformatics comparison of Salmonella Pathogenicity Island 3 sequences from S. Typhi and S. Typhimurium serovars showed that ten genes are highly conserved. However three of them are pseudogenes in S. Typhi. Our aim was to understand what functions are lost in S. Typhi due to pseudogenes by constructing a S. Typhi genetic hybrid carrying the SPI-3 region of S. Typhimurium instead of its own SPI-3. We observed that under stressful conditions the hybrid strain showed a clear impairment in resistance to hydrogen peroxide and decreased survival within U937 culture monocytes. We hypothesized that the marT-fidL operon, encoded in SPI-3, was responsible for the new phenotypes because marT is a pseudogen in S. Typhi and has a demonstrated role as a transcriptional regulator in S. Typhimurium. Therefore we cloned and transferred the S. Typhimurium marT-fidL operon into S. Typhi and confirmed that invasion of monocytes was dramatically decreased. Finally, our findings suggest that the genomic and functional differences between SPI-3 sequences have implications in the host specificity of Typhi and Typhimurium serovars.


Sujet(s)
Ilots génomiques/génétique , Viabilité microbienne/génétique , Salmonella typhi/génétique , Salmonella typhimurium/génétique , Anaérobiose , Régulation de l'expression des gènes bactériens , Ordre des gènes , Gènes bactériens/génétique , Génotype , Humains , Peroxyde d'hydrogène/pharmacologie , Concentration en ions d'hydrogène , Viabilité microbienne/effets des médicaments et des substances chimiques , Mutation , Opéron/génétique , Phénotype , RT-PCR , Salmonella typhi/croissance et développement , Salmonella typhi/pathogénicité , Salmonella typhimurium/croissance et développement , Salmonella typhimurium/pathogénicité , Température , Transformation génétique , Cellules U937
14.
J Enzyme Inhib Med Chem ; 24(3): 638-45, 2009 Jun.
Article de Anglais | MEDLINE | ID: mdl-18825538

RÉSUMÉ

Subtype F wild type HIV protease has been kinetically characterized using six commercial inhibitors (amprenavir, indinavir, lopinavir, nelfinavir, ritonavir and saquinavir) commonly used for HIV/AIDS treatment, as well as inhibitor TL-3 and acetyl-pepstatin. We also obtained kinetic parameters for two multi-resistant proteases (one of subtype B and one of subtype F) harboring primary and secondary mutations selected by intensive treatment with ritonavir/nelfinavir. This newly obtained biochemical data shows that all six studied commercially available protease inhibitors are significantly less effective against subtype F HIV proteases than against HIV proteases of subtype B, as judged by increased K(i) and biochemical fitness (vitality) values. Comparison with previously reported kinetic values for subtype A and C HIV proteases show that subtype F wild type proteases are significantly less susceptible to inhibition. These results demonstrate that the accumulation of natural polymorphisms in subtype F proteases yields catalytically more active enzymes with a large degree of cross-resistance, which thus results in strong virus viability.


Sujet(s)
Résistance virale aux médicaments , Inhibiteurs de protéase du VIH/pharmacologie , Protéase du VIH/classification , Protéase du VIH/métabolisme , Séquence d'acides aminés , Sites de fixation , Activation enzymatique/effets des médicaments et des substances chimiques , VIH (Virus de l'Immunodéficience Humaine)/effets des médicaments et des substances chimiques , VIH (Virus de l'Immunodéficience Humaine)/enzymologie , VIH (Virus de l'Immunodéficience Humaine)/génétique , Infections à VIH/traitement médicamenteux , Infections à VIH/génétique , Infections à VIH/virologie , Protéase du VIH/composition chimique , Protéase du VIH/génétique , Inhibiteurs de protéase du VIH/classification , Inhibiteurs de protéase du VIH/usage thérapeutique , Humains , Cinétique , Viabilité microbienne/effets des médicaments et des substances chimiques , Viabilité microbienne/génétique , Données de séquences moléculaires , Mutation , Nelfinavir/pharmacologie , Polymorphisme génétique , Ritonavir/pharmacologie , Alignement de séquences
15.
Appl Environ Microbiol ; 74(6): 1829-35, 2008 Mar.
Article de Anglais | MEDLINE | ID: mdl-18203861

RÉSUMÉ

The chemolithoautotrophic bacterium Acidithiobacillus ferrooxidans is of great importance in biomining operations. During the bioleaching of ores, microorganisms are subjected to a variety of environmental stresses and to the limitations of some nutrients, such as inorganic phosphate (P(i)), which is an essential component for all living cells. Although the primary source of phosphorus for microorganisms is P(i), some bacteria are also able to metabolize P(i) esters (with a C-O-P bond) and phosphonates (with a very inert C-P bond). By using bioinformatic analysis of genomic sequences of the type strain of A. ferrooxidans (ATCC 23270), we found that as part of a Pho regulon, this bacterium has a complete gene cluster encoding C-P lyase, which is the main bacterial enzyme involved in phosphonate (Pn) degradation in other microorganisms. A. ferrooxidans was able to grow in the presence of methyl-Pn or ethyl-Pn as an alternative phosphorus source. Under these growth conditions, a great reduction in inorganic polyphosphate (polyP) levels was seen compared with the level for cells grown in the presence of P(i). By means of reverse transcription-PCR (RT-PCR), DNA macroarrays, and real-time RT-PCR experiments, it was found that A. ferrooxidans phn genes were cotranscribed and their expression was induced when the microorganism was grown in methyl-Pn as the only phosphorus source. This is the first report of phosphonate utilization in a chemolithoautotrophic microorganism. The existence of a functional C-P lyase system is a clear advantage for the survival under P(i) limitation, a condition that may greatly affect the bioleaching of ores.


Sujet(s)
Acidithiobacillus/génétique , Lyases/génétique , Opéron , Phosphonates/métabolisme , Phosphates/métabolisme , Acidithiobacillus/croissance et développement , Acidithiobacillus/métabolisme , Régulation de l'expression des gènes bactériens , Gènes bactériens , Lyases/métabolisme , Viabilité microbienne/génétique , Modèles génétiques , Séquençage par oligonucléotides en batterie , Régulon/génétique , RT-PCR
16.
Mol Microbiol ; 66(5): 1240-55, 2007 Dec.
Article de Anglais | MEDLINE | ID: mdl-17986185

RÉSUMÉ

Sigma factors of the ECF subfamily are important regulators of stress responses in bacteria. Analysis of Caulobacter crescentus genome sequence has indicated the presence of 13 members of the ECF (extracytoplasmic function) subfamily, suggesting that these regulators play an important role in C. crescentus physiology. This work describes the characterization of two highly similar C. crescentus ECF sigma factors, sigma(U) and sigma(T). The corresponding genes are not essential under normal growth conditions and absence of sigma(U) does not impair bacterial resistance to the environmental stresses tested. However, absence of sigma(T) significantly affects the ability of C. crescentus cells to survive osmotic and oxidative stress. Using transcription fusions to sigT and sigU upstream regions we demonstrate that both genes are induced by osmotic stress in a sigma(T)-dependent manner. Determination of sigU and sigT transcription start sites revealed an identical promoter motif, typical of ECF-dependent promoters. Transcriptome analysis revealed 40 putative members of the sigma(T) regulon, including sigU and sigR, encoding another ECF subfamily member, and genes involved in general stress responses and cell envelope functions. Twenty of those genes exhibit the sigT/sigU promoter motif in their upstream regions. Our data indicate a role of sigma(T) in distinct stress responses in C. crescentus.


Sujet(s)
Protéines bactériennes/physiologie , Caulobacter crescentus/physiologie , Régulation de l'expression des gènes bactériens , Stress oxydatif , Facteur sigma/physiologie , Fusion artificielle de gènes , Sites de fixation/génétique , Caulobacter crescentus/génétique , Analyse de profil d'expression de gènes , Gènes rapporteurs , Viabilité microbienne/génétique , Pression osmotique , Site d'initiation de la transcription , beta-Galactosidase/biosynthèse , beta-Galactosidase/génétique
17.
Redox Rep ; 11(4): 179-84, 2006.
Article de Anglais | MEDLINE | ID: mdl-16984741

RÉSUMÉ

Much has been published on the non-enzymatic antioxidant L-ascorbic acid (vitamin C), but even so its interaction with endogenous cellular defense systems has not yet been fully elucidated. Our study investigated the antioxidant activity of L-ascorbic acid in wild-type strain EG103 (SOD) Saccharomyces cerevisiae and isogenic mutant strains deficient in cytosolic superoxide dismutase (sod1delta), mitochondrial superoxide dismutase (sod2delta) or both (sod1delta sod2delta), metabolizing aerobically or anaerobically with and without the stressing agent paraquat. The results show that during both aerobic and anaerobic metabolism there was a significant increase in the survival of both wild-type S. cerevisiae cells and the mutant cells (sod1delta, sod2delta and sod1delta sod2delta) when pretreated with L-ascorbic acid before exposure to paraquat. Exposure to paraquat resulted in higher catalase activity but this significantly decreased when the cells were pre-treated with L-ascorbic acid. These results demonstrate that due to the damage caused by paraquat, the antioxidant protection of L-ascorbic acid seems to be mediated by catalase levels in yeast cells.


Sujet(s)
Acide ascorbique/pharmacologie , Mutation/génétique , Saccharomyces cerevisiae/effets des médicaments et des substances chimiques , Superoxide dismutase/génétique , Aérobiose , Anaérobiose , Antioxydants/pharmacologie , Catalase/métabolisme , Cytosol/enzymologie , Relation dose-effet des médicaments , Régulation de l'expression des gènes fongiques/effets des médicaments et des substances chimiques , Herbicides/toxicité , Viabilité microbienne/effets des médicaments et des substances chimiques , Viabilité microbienne/génétique , Mitochondries/enzymologie , Protéines mitochondriales/génétique , Protéines mitochondriales/métabolisme , Oxydoréduction/effets des médicaments et des substances chimiques , Paraquat/toxicité , Espèces réactives de l'oxygène/métabolisme , Saccharomyces cerevisiae/génétique , Saccharomyces cerevisiae/métabolisme , Protéines de Saccharomyces cerevisiae/génétique , Protéines de Saccharomyces cerevisiae/métabolisme , Superoxide dismutase/déficit , Superoxide dismutase/métabolisme
18.
Mutat Res ; 611(1-2): 34-41, 2006 Dec 10.
Article de Anglais | MEDLINE | ID: mdl-16987694

RÉSUMÉ

A range of biologically active secondary metabolites with pharmacological application has been reported to occur in marine sponges. The present study was undertaken to provide a set of data on the safety of a hydro-alcoholic extract (ALE) and an aqueous fraction (AQE) from Aplysina fulva Pallas, 1766 (Aplysinidae, Verongida, Porifera). Salmonella typhimurium strains TA97, TA98, TA100 and TA102, Escherichia coli strains PQ65, OG40, OG100, PQ35 and PQ37 and Balb/c 3T3 mouse fibroblasts were used to detect induction of DNA lesions by ALE and AQE. Assays used for these analyses were a bacterial (reverse) mutation assay (Ames test), the SOS-chromotest and the comet assay. Both extracts presented identical infrared 2-oxazolidone spectra. ALE treatment induced a higher frequency of type-4 comets, indicative of increasing DNA migration, in the alkaline comet assay. ALE also induced a weak genotoxic effect, as expressed by the induction factor (IF) values in the test with E. coli strain PQ35 (IF=1.5) and by cytotoxic effects in strains PQ35, PQ65 and PQ37. Positive SOS induction (IF=1.7) was detected in strain PQ37 treated with diluted AQE. No genotoxic effects were observed in strains PQ35, PQ65, OG40 and OG 100 after treatment with AQE dilutions. Using the bacterial (reverse) mutation test and survival assays with or without S9 mix, after 60min of pre-incubation, we observed for strain TA97 treated with ALE a weak mutagenic response (MI=2.2), while cytotoxic effects were seen for strains TA98, TA100 and TA102. AQE did not show mutagenic activity in any of the strains tested, but a weak cytotoxic effect was noted in strain TA102. Our data suggest that both ALE and AQE from A. fulva induce DNA breaks leading to cytotoxicity and mutagenicity under the conditions used.


Sujet(s)
Mutagènes/toxicité , Porifera/composition chimique , 19351/effets des médicaments et des substances chimiques , Cellules 3T3 , Animaux , Test des comètes/méthodes , Cassures de l'ADN , ADN bactérien/effets des médicaments et des substances chimiques , ADN bactérien/génétique , Escherichia coli/effets des médicaments et des substances chimiques , Escherichia coli/génétique , Souris , Souris de lignée BALB C , Viabilité microbienne/effets des médicaments et des substances chimiques , Viabilité microbienne/génétique , Tests de mutagénicité/méthodes , Rats , Rat Sprague-Dawley , 19351/génétique , Salmonella typhimurium/effets des médicaments et des substances chimiques , Salmonella typhimurium/génétique
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