Your browser doesn't support javascript.
loading
Montrer: 20 | 50 | 100
Résultats 1 - 20 de 9.419
Filtrer
1.
Curr Microbiol ; 81(7): 210, 2024 Jun 05.
Article de Anglais | MEDLINE | ID: mdl-38837067

RÉSUMÉ

The extensive use of high-throughput sequencing (HTS) has significantly advanced and transformed our comprehension of virus diversity, especially in intricate settings like soil and biological specimens. In this study, we delved into mycovirus sequence surveys within mycorrhizal fungus species Terfezia claveryi, through employing HTS with total double-stranded RNA (dsRNA) extracts. Our findings revealed the presence of four distinct members from the Alsuviricetes class, one flexivirus designated as Terfezia claveryi flexivirus 1 (TcFV1) and three endornaviruses (TcEV1, TcEV2, and TcEV3) in two different T. claveryi isolates. TcFV1, a member of the order Tymovirales, exhibits a unique genome structure and sequence features. Through in-depth analyses, we found that it shares sequence similarities with other deltaflexiviruses and challenges existing Deltaflexiviridae classification. The discovery of TcFV1 adds to the genomic plasticity of mycoviruses within the Tymovirales order, shedding light on their evolutionary adaptations. Additionally, the three newly discovered endornaviruses (TcEV1, TcEV2, and TcEV3) in T. claveryi exhibited limited sequence similarities with other endornaviruses and distinctive features, including conserved domains like DEAD-like helicase, ATPases Associated with Diverse Cellular Activities (AAA ATPase), and RNA dependent RNA polymerase (RdRp), indicating their classification as members of new species within the Alphaendornavirus genus. In conclusion, this research emphasizes the importance of exploring viral diversity in uncultivated fungi, bridging knowledge gaps in mycovirus ecology. The discoveries of a novel flexivirus with unique genome organization and endornaviruses in T. claveryi broaden our comprehension of mycovirus diversity and evolution, highlighting the need for continued investigations into viral populations in wild fungi.


Sujet(s)
Virus fongiques , Génome viral , Mycorhizes , Phylogenèse , Virus fongiques/génétique , Virus fongiques/classification , Virus fongiques/isolement et purification , Mycorhizes/génétique , Mycorhizes/virologie , Mycorhizes/classification , Virus à ARN/génétique , Virus à ARN/classification , Virus à ARN/isolement et purification , ARN viral/génétique , Séquençage nucléotidique à haut débit , Basidiomycota/virologie , Basidiomycota/génétique
2.
Methods Mol Biol ; 2786: 51-87, 2024.
Article de Anglais | MEDLINE | ID: mdl-38814390

RÉSUMÉ

Vectored RNA vaccines offer a variety of possibilities to engineer targeted vaccines. They are cost-effective and safe, but replication competent, activating the humoral as well as the cellular immune system.This chapter focuses on RNA vaccines derived from negative-strand RNA viruses from the order Mononegavirales with special attention to Newcastle disease virus-based vaccines and their generation. It shall provide an overview on the advantages and disadvantages of certain vector platforms as well as their scopes of application, including an additional section on experimental COVID-19 vaccines.


Sujet(s)
Vecteurs génétiques , Virus de la maladie de Newcastle , Vaccins à ARNm , Animaux , Humains , COVID-19/prévention et contrôle , COVID-19/immunologie , COVID-19/virologie , Vecteurs génétiques/génétique , Virus de la maladie de Newcastle/génétique , Virus de la maladie de Newcastle/immunologie , Virus à ARN/génétique , Virus à ARN/immunologie , SARS-CoV-2/immunologie , SARS-CoV-2/génétique , Vaccins antiviraux/immunologie , Vaccins antiviraux/génétique , Vaccins à ARNm/génétique , Vaccins à ARNm/immunologie
3.
BMC Genomics ; 25(1): 517, 2024 May 27.
Article de Anglais | MEDLINE | ID: mdl-38797853

RÉSUMÉ

BACKGROUND: Like all other species, fungi are susceptible to infection by viruses. The diversity of fungal viruses has been rapidly expanding in recent years due to the availability of advanced sequencing technologies. However, compared to other virome studies, the research on fungi-associated viruses remains limited. RESULTS: In this study, we downloaded and analyzed over 200 public datasets from approximately 40 different Bioprojects to explore potential fungal-associated viral dark matter. A total of 12 novel viral sequences were identified, all of which are RNA viruses, with lengths ranging from 1,769 to 9,516 nucleotides. The amino acid sequence identity of all these viruses with any known virus is below 70%. Through phylogenetic analysis, these RNA viruses were classified into different orders or families, such as Mitoviridae, Benyviridae, Botourmiaviridae, Deltaflexiviridae, Mymonaviridae, Bunyavirales, and Partitiviridae. It is possible that these sequences represent new taxa at the level of family, genus, or species. Furthermore, a co-evolution analysis indicated that the evolutionary history of these viruses within their groups is largely driven by cross-species transmission events. CONCLUSIONS: These findings are of significant importance for understanding the diversity, evolution, and relationships between genome structure and function of fungal viruses. However, further investigation is needed to study their interactions.


Sujet(s)
Virus fongiques , Champignons , Génome viral , Séquençage nucléotidique à haut débit , Phylogenèse , Virus à ARN , Virus à ARN/génétique , Virus à ARN/classification , Champignons/génétique , Virus fongiques/génétique , Virus fongiques/classification , Évolution moléculaire
4.
Arch Virol ; 169(6): 126, 2024 May 16.
Article de Anglais | MEDLINE | ID: mdl-38753067

RÉSUMÉ

A novel mitovirus was identified in Fusarium oxysporum f. sp. melonis strain T-SD3 and designated as "Fusarium oxysporum mitovirus 3" (FoMV3). The virus was isolated from diseased muskmelon plants with the typical symptom of fusarium wilt. The complete genome of FoMV3 is 2269 nt in length with a predicted AU content of 61.40% and contains a single open reading frame (ORF) using the fungal mitochondrial genetic code. The ORF was predicted to encode a polypeptide of 679 amino acids (aa) containing a conserved RNA-dependent RNA polymerase (RdRp) domain with a molecular mass of 77.39 kDa, which contains six conserved motifs with the highly conserved GDD tripeptide in motif IV. The 5'-untranslated region (UTR) and 3'-UTR of FoMV3 were predicted to fold into stem-loop structures. BLASTp analysis revealed that the RdRp of FoMV3 shared the highest aa sequence identity (83.85%) with that of Fusarium asiaticum mitovirus 5 (FaMV5, a member of the family Mitoviridae) infecting F. asiaticum, the causal agent of wheat fusarium head blight. Phylogenetic analysis further suggested that FoMV3 is a new member of the genus Unuamitovirus within the family Mitoviridae. This is the first report of a new mitovirus associated with F. oxysporum f. sp. melonis.


Sujet(s)
Virus fongiques , Fusarium , Génome viral , Cadres ouverts de lecture , Phylogenèse , Maladies des plantes , Fusarium/virologie , Maladies des plantes/microbiologie , Maladies des plantes/virologie , Virus fongiques/génétique , Virus fongiques/isolement et purification , Virus fongiques/classification , Virus à ARN/génétique , Virus à ARN/isolement et purification , Virus à ARN/classification , Séquençage du génome entier , ARN viral/génétique , RNA replicase/génétique , Protéines virales/génétique , Cucumis melo/virologie , Cucumis melo/microbiologie , Séquence d'acides aminés , Régions 5' non traduites , Régions 3' non traduites , Séquence nucléotidique
5.
Arch Virol ; 169(6): 128, 2024 May 28.
Article de Anglais | MEDLINE | ID: mdl-38802709

RÉSUMÉ

A novel negative-sense single-stranded RNA mycovirus, designated as "Magnaporthe oryzae mymonavirus 1" (MoMNV1), was identified in the rice blast fungus Magnaporthe oryzae isolate NJ39. MoMNV1 has a single genomic RNA segment consisting of 10,515 nucleotides, which contains six open reading frames. The largest open reading frame contains 5837 bases and encodes an RNA replicase. The six open reading frames have no overlap and are arranged linearly on the genome, but the spacing of the genes is small, with a maximum of 315 bases and a minimum of 80 bases. Genome comparison and phylogenetic analysis indicated that MoMNV1 is a new member of the genus Penicillimonavirus of the family Mymonaviridae.


Sujet(s)
Virus fongiques , Génome viral , Cadres ouverts de lecture , Oryza , Phylogenèse , Maladies des plantes , Virus à ARN , ARN viral , Virus à ARN/génétique , Virus à ARN/isolement et purification , Virus à ARN/classification , Virus fongiques/génétique , Virus fongiques/isolement et purification , Virus fongiques/classification , Oryza/microbiologie , Oryza/virologie , Maladies des plantes/microbiologie , Maladies des plantes/virologie , ARN viral/génétique , Ascomycota/virologie , Ascomycota/génétique , Protéines virales/génétique , Magnaporthe/virologie , Magnaporthe/génétique
6.
Cells ; 13(10)2024 May 09.
Article de Anglais | MEDLINE | ID: mdl-38786028

RÉSUMÉ

Zika (ZIKV) and Chikungunya (CHIKV) viruses are mosquito-transmitted infections, or vector-borne pathogens, that emerged a few years ago. Reliable diagnostic tools for ZIKV and CHIKV-inexpensive, multiplexed, rapid, highly sensitive, and specific point-of-care (POC) systems-are vital for appropriate risk management and therapy. We recently studied a detection system with great success in Mexico (Villahermosa, state of Tabasco), working with human sera from patients infected with those viruses. The research conducted in Mexico validated the efficacy of a novel two-step rapid isothermal amplification technique (RAMP). This approach, which encompasses recombinase polymerase amplification (RPA) followed by loop-mediated isothermal amplification (LAMP), had been previously established in the lab using lab-derived Zika (ZIKV) and Chikungunya (CHIKV) viruses. Crucially, our findings confirmed that this technique is also effective when applied to human sera samples collected from locally infected individuals in Mexico.


Sujet(s)
Virus du chikungunya , Techniques d'amplification d'acides nucléiques , Infection par le virus Zika , Virus Zika , Humains , Virus Zika/génétique , Virus Zika/isolement et purification , Techniques d'amplification d'acides nucléiques/méthodes , Virus du chikungunya/génétique , Virus du chikungunya/isolement et purification , Infection par le virus Zika/diagnostic , Infection par le virus Zika/virologie , Infection par le virus Zika/sang , Fièvre chikungunya/diagnostic , Fièvre chikungunya/virologie , Fièvre chikungunya/sang , Techniques de diagnostic moléculaire/méthodes , ARN viral/génétique , ARN viral/sang , Mexique , Sensibilité et spécificité , Virus à ARN/génétique , Virus à ARN/isolement et purification
7.
Biol Lett ; 20(5): 20230600, 2024 May.
Article de Anglais | MEDLINE | ID: mdl-38715462

RÉSUMÉ

Novel transmission routes change pathogen landscapes and may facilitate disease emergence. The varroa mite is a virus vector that switched to western honeybees at the beginning of the last century, leading to hive mortality, particularly in combination with RNA viruses. A recent invasion of varroa on the French island of Ushant introduced vector-mediated transmission to one of the last varroa-naive native honeybee populations and caused rapid changes in the honeybee viral community. These changes were characterized by a drastic increase in deformed wing virus type B prevalence and titre in honeybees, as well as knock-on effects in bumblebees, particularly in the year following the invasion. Slow bee paralysis virus also appeared in honeybees and bumblebees, with a 1 year delay, while black queen cell virus declined in honeybees. This study highlights the rapid and far-reaching effects of vector-borne transmission that can extend beyond the directly affected host species, and that the direction of the effect depends on the pathogen's virulence.


Sujet(s)
Virus à ARN , Varroidae , Animaux , Abeilles/virologie , Varroidae/virologie , Varroidae/physiologie , Virus à ARN/physiologie , Virus à ARN/génétique , France/épidémiologie , Espèce introduite , Dicistroviridae/génétique , Dicistroviridae/physiologie , Prévalence
8.
PLoS Pathog ; 20(5): e1012230, 2024 May.
Article de Anglais | MEDLINE | ID: mdl-38776321

RÉSUMÉ

While macrophage is one of the major type I interferon (IFN-I) producers in multiple tissues during viral infections, it also serves as an important target cell for many RNA viruses. However, the regulatory mechanism for the IFN-I response of macrophages to respond to a viral challenge is not fully understood. Here we report ADAP, an immune adaptor protein, is indispensable for the induction of the IFN-I response of macrophages to RNA virus infections via an inhibition of the conjugation of ubiquitin-like ISG15 (ISGylation) to RIG-I. Loss of ADAP increases RNA virus replication in macrophages, accompanied with a decrease in LPS-induced IFN-ß and ISG15 mRNA expression and an impairment in the RNA virus-induced phosphorylation of IRF3 and TBK1. Moreover, using Adap-/- mice, we show ADAP deficiency strongly increases the susceptibility of macrophages to RNA-virus infection in vivo. Mechanically, ADAP selectively interacts and functionally cooperates with RIG-I but not MDA5 in the activation of IFN-ß transcription. Loss of ADAP results in an enhancement of ISGylation of RIG-I, whereas overexpression of ADAP exhibits the opposite effect in vitro, indicating ADAP is detrimental to the RNA virus-induced ISGylation of RIG-I. Together, our data demonstrate a novel antagonistic activity of ADAP in the cell-intrinsic control of RIG-I ISGylation, which is indispensable for initiating and sustaining the IFN-I response of macrophages to RNA virus infections and replication.


Sujet(s)
Protéines adaptatrices de la transduction du signal , Protéine-58 à domaine DEAD , Interféron de type I , Macrophages , Souris knockout , Infections à virus à ARN , Ubiquitines , Animaux , Macrophages/virologie , Macrophages/métabolisme , Macrophages/immunologie , Souris , Infections à virus à ARN/immunologie , Infections à virus à ARN/métabolisme , Ubiquitines/métabolisme , Ubiquitines/génétique , Protéine-58 à domaine DEAD/métabolisme , Interféron de type I/métabolisme , Protéines adaptatrices de la transduction du signal/métabolisme , Protéines adaptatrices de la transduction du signal/génétique , Cytokines/métabolisme , Souris de lignée C57BL , Humains , Récepteurs immunologiques/métabolisme , Interféron bêta/métabolisme , Virus à ARN/immunologie , Facteur-3 de régulation d'interféron/métabolisme
9.
Viruses ; 16(5)2024 04 25.
Article de Anglais | MEDLINE | ID: mdl-38793556

RÉSUMÉ

Yunnan province in China shares its borders with three neighboring countries: Myanmar, Vietnam, and Laos. The region is characterized by a diverse climate and is known to be a suitable habitat for various arthropods, including midges which are notorious for transmitting diseases which pose significant health burdens affecting both human and animal health. A total of 431,100 midges were collected from 15 different locations in the border region of Yunnan province from 2015 to 2020. These midges were divided into 37 groups according to the collection year and sampling site. These 37 groups of midges were then homogenized to extract nucleic acid. Metatranscriptomics were used to analyze their viromes. Based on the obtained cytochrome C oxidase I gene (COI) sequences, three genera were identified, including one species of Forcipomyia, one species of Dasyhelea, and twenty-five species of Culicoides. We identified a total of 3199 viruses in five orders and 12 families, including 1305 single-stranded positive-stranded RNA viruses (+ssRNA) in two orders and seven families, 175 single-stranded negative-stranded RNA viruses (-ssRNA) in two orders and one family, and 1719 double-stranded RNA viruses in five families. Six arboviruses of economic importance were identified, namely Banna virus (BAV), Japanese encephalitis virus (JEV), Akabane virus (AKV), Bluetongue virus (BTV), Tibetan circovirus (TIBOV), and Epizootic hemorrhagic disease virus (EHDV), all of which are capable, to varying extents, of causing disease in humans and/or animals. The survey sites in this study basically covered the current distribution area of midges in Yunnan province, which helps to predict the geographic expansion of midge species. The complexity and diversity of the viral spectrum carried by midges identified in the study calls for more in-depth research, which can be utilized to monitor arthropod vectors and to predict the emergence and spread of zoonoses and animal epidemics, which is of great significance for the control of vector-borne diseases.


Sujet(s)
Ceratopogonidae , Phylogenèse , Animaux , Chine , Ceratopogonidae/virologie , Ceratopogonidae/génétique , Virus à ARN/génétique , Virus à ARN/classification , Virus à ARN/isolement et purification , Transcriptome , Vecteurs insectes/virologie , Virome/génétique , Humains
10.
J Invertebr Pathol ; 204: 108125, 2024 Jun.
Article de Anglais | MEDLINE | ID: mdl-38705353

RÉSUMÉ

In La Réunion, the established honeybee subspecies Apis mellifera unicolor, an endemic subspecies of African lineage, is facing considerable challenges. Since the introduction of the Varroa destructor mite in 2017 high colony losses have been recorded. We investigated the dynamics of V. destructor and two viruses, the Deformed Wing Virus (DWV), known to be transmitted by the mite, and the Chronic Bee Paralysis Virus (CBPV), in A. m. unicolor. Colonies from two apiaries located at 300 and 900 m a.s.l were monitored twice for one year without any acaricide treatment. The brood area, V. destructor infestation rates, DWV and CBPV prevalence and load were recorded monthly. A. m. unicolor maintained brood rearing throughout the year. Varroa destructor infestation resulted in high colony mortality (up to 85 %) and high phoretic mite rates (up to 52 mites per hundred bees). The establishment of DWV in colonies occurred after that of V. destructor and the mite infestation rate had a significant effect on the virus prevalence and load. CBPV appeared only transiently throughout the surveys. The data showed that, in tropical colonies with permanent brood rearing, V. destructor and DWV can reach high levels, but are still subject to seasonal variations that appear to be influenced by environmental conditions. This suggests that beekeeping practices could be adapted by favouring sites and periods for transhumance or acaricide treatment.


Sujet(s)
Virus à ARN , Varroidae , Animaux , Abeilles/virologie , Abeilles/parasitologie , Varroidae/virologie , Varroidae/physiologie , Acarioses/médecine vétérinaire , Acarioses/parasitologie , Virus des insectes , Espèce introduite , Interactions hôte-parasite , Iles , Dicistroviridae/physiologie
11.
Virol J ; 21(1): 101, 2024 05 01.
Article de Anglais | MEDLINE | ID: mdl-38693578

RÉSUMÉ

The Cyclic GMP-AMP synthase-stimulator of interferon genes (cGAS-STING) serves as a key innate immune signaling axis involved in the regulation of various human diseases. It has been found that cGAS-STING pathway can recognize a variety of cytosolic double-stranded DNA (dsDNA), contributing to cause a robust type I interferon response thereby affecting the occurrence and progression of viral infection. Accumulating evidence indicates RNA virus-derived components play an important role in regulating cGAS-STING signaling, either as protective or pathogenic factors in the pathogenesis of diseases. Thus, a comprehensive understanding of the function of RNA virus-derived components in regulating cGAS-STING signaling will provide insights into developing novel therapies. Here, we review the existing literature on cGAS-STING pathway regulated by RNA virus-derived components to propose insights into pharmacologic strategies targeting the cGAS-STING pathway.


Sujet(s)
Immunité innée , Protéines membranaires , Nucleotidyltransferases , Virus à ARN , Transduction du signal , Nucleotidyltransferases/métabolisme , Nucleotidyltransferases/génétique , Humains , Protéines membranaires/métabolisme , Protéines membranaires/génétique , Virus à ARN/physiologie , Virus à ARN/immunologie , Animaux , Interféron de type I/métabolisme
12.
mBio ; 15(5): e0069224, 2024 May 08.
Article de Anglais | MEDLINE | ID: mdl-38567955

RÉSUMÉ

Defective viral genomes (DVGs) are truncated derivatives of their parental viral genomes generated during an aberrant round of viral genomic replication. Distinct classes of DVGs have been identified in most families of both positive- and negative-sense RNA viruses. Importantly, DVGs have been detected in clinical samples from virally infected individuals and an emerging body of association studies implicates DVGs in shaping the severity of disease caused by viral infections in humans. Consequently, there is growing interest in understanding the molecular mechanisms of de novo DVG generation, how DVGs interact with the innate immune system, and harnessing DVGs as novel therapeutics and vaccine adjuvants to attenuate viral pathogenesis. This minireview focuses on single-stranded RNA viruses (excluding retroviridae), and summarizes the current knowledge of DVG generation, the functions and diversity of DVG species, the roles DVGs play in influencing disease progression, and their application as antivirals and vaccine adjuvants.


Sujet(s)
Virus défectifs , Génome viral , Humains , Virus défectifs/génétique , Réplication virale , Animaux , Virus à ARN/génétique , Immunité innée , Maladies virales/virologie , Maladies virales/génétique , Maladies virales/immunologie
13.
Sci Rep ; 14(1): 8963, 2024 04 18.
Article de Anglais | MEDLINE | ID: mdl-38637564

RÉSUMÉ

The health of honey bee queens is crucial for colony success, particularly during stressful periods like overwintering. To accompany a previous longitudinal study of colony and worker health, we explored niche-specific gut microbiota, host gene expression, and pathogen prevalence in honey bee queens overwintering in a warm southern climate. We found differential gene expression and bacterial abundance with respect to various pathogens throughout the season. Biologically older queens had larger microbiotas, particularly enriched in Bombella and Bifidobacterium. Both Deformed Wing Virus A and B subtypes were highest in the fat body tissue in January, correlating with colony Varroa levels, and Deformed Wing Virus titers in workers. High viral titers in queens were associated with decreased vitellogenin expression, suggesting a potential trade-off between immune function and reproductive capacity. Additionally, we found a complex and dynamic relationship between these viral loads and immune gene expression, indicating a possible breakdown in the coordinated immune response as the season progressed. Our study also revealed a potential link between Nosema and Melissococcus plutonius infections in queens, demonstrating that seasonal opportunism is not confined to just workers. Overall, our findings highlight the intricate interplay between pathogens, metabolic state, and immune response in honey bee queens. Combined with worker and colony-level metrics from the same colonies, our findings illustrate the social aspect of queen health and resilience over the winter dearth.


Sujet(s)
Climat , Virus à ARN , Abeilles , Animaux , Saisons , Études longitudinales
14.
J Gen Virol ; 105(4)2024 Apr.
Article de Anglais | MEDLINE | ID: mdl-38602389

RÉSUMÉ

A negative-strand symbiotic RNA virus, tentatively named Nilaparvata lugens Bunyavirus (NLBV), was identified in the brown planthopper (BPH, Nilaparvata lugens). Phylogenetic analysis indicated that NLBV is a member of the genus Mobuvirus (family Phenuiviridae, order Bunyavirales). Analysis of virus-derived small interfering RNA suggested that antiviral immunity of BPH was successfully activated by NLBV infection. Tissue-specific investigation showed that NLBV was mainly accumulated in the fat-body of BPH adults. Moreover, NLBV was detected in eggs of viruliferous female BPHs, suggesting the possibility of vertical transmission of NLBV in BPH. Additionally, no significant differences were observed for the biological properties between NLBV-infected and NLBV-free BPHs. Finally, analysis of geographic distribution indicated that NLBV may be prevalent in Southeast Asia. This study provided a comprehensive characterization on the molecular and biological properties of a symbiotic virus in BPH, which will contribute to our understanding of the increasingly discovered RNA viruses in insects.


Sujet(s)
Hemiptera , Orthobunyavirus , Virus à ARN , Animaux , Femelle , Phylogenèse , Insectes , Virus à ARN/génétique
15.
Can J Vet Res ; 88(2): 45-54, 2024 Apr.
Article de Anglais | MEDLINE | ID: mdl-38595951

RÉSUMÉ

Honey bees can be affected by a variety of pathogens, which impacts their vital role as pollinators in agriculture. A cross-sectional study was conducted in southwestern Quebec to: i) estimate the prevalence of 11 bee pathogens; ii) assess the agreement between beekeeper suspicion of a disease and laboratory detection of the causative pathogen; and iii) explore the association between observed clinical signs and pathogen detection in a colony. A total of 242 colonies in 31 apiaries owned by 15 beekeepers was sampled in August 2017. The prevalence of Varroa destructor detection was estimated as 48% for colonies and 93% for apiaries. The apparent prevalence of colonies infected by Nosema spp. and Melissococcus plutonius was estimated as 40% and 21%, respectively. At least 180 colonies were tested by polymerase chain reaction (PCR) for deformed wing virus (DWV), acute-Kashmir-Israeli complex (AKI complex), and black queen cell virus (BQCV), which were detected in 33%, 9%, and 95% of colonies, respectively. Acarapis woodi, Paenibacillus larvae, and Aethina tumida were not detected. Varroasis was suspected by beekeepers in 14 of the 15 beekeeping operations in which the mite was detected. However, no correlation was found between suspected European foulbrood and detection of M. plutonius or between suspected nosemosis and detection of Nosema spp. Colony weakness was associated with Nosema spore counts of at least 0.5 × 106 per bee. Melissococcus plutonius was more frequently detected in colonies showing scattered brood.


Les abeilles mellifères peuvent être affectées par plusieurs agents pathogènes, impactant leur rôle vital de pollinisateur en agriculture. Une étude transversale a été réalisée dans le sud-ouest du Québec afin 1) d'estimer la prévalence de onze agents pathogènes de l'abeille, 2) d'évaluer l'accord entre la suspicion d'une maladie par l'apiculteur et la détection de l'agent causal, 3) d'explorer les associations entre les signes cliniques et la détection d'un agent pathogène dans une colonie. Au total, 242 colonies de 31 ruchers appartenant à 15 apiculteurs ont été échantillonnées en août 2017. La prévalence de Varroa destructor a été estimée à 48 % pour les colonies et à 93 % pour les ruchers. La prévalence apparente de colonies infectées par Nosema spp. ou Melissococcus plutonius a été estimée à respectivement 40 % et 21 %. Le virus des ailes déformées, le complexe viral AKI et le virus de la reine noire ont été détectés dans respectivement 33 %, 9 % et 95 % dans des 180 colonies testées par PCR. Acarapis woodi, Paenibacillus larvae et Aethina tumida n'ont pas été détectés. La varroase était suspectée par les apiculteurs de 14 des 15 entreprises où la mite a été détectée. Aucune corrélation n'a été trouvée entre la suspicion de loque européenne et la détection de M. plutonius ou entre la suspicion de nosémose et la détection de Nosema spp. La faiblesse des colonies a été associée à des comptes de Nosema d'au moins 0,5 × 106 spores par abeille. Melissococcus plutonius était plus fréquemment détecté parmi les colonies présentant du couvain en mosaïque.(Traduit pas les auteurs).


Sujet(s)
Études transversales , Enterococcaceae , Virus à ARN , Abeilles , Animaux , Québec/épidémiologie , Prévalence
16.
PLoS Comput Biol ; 20(4): e1012009, 2024 Apr.
Article de Anglais | MEDLINE | ID: mdl-38648223

RÉSUMÉ

Influenza A virus contains regions of its segmented genome associated with ability to package the segments into virions, but many such regions are poorly characterised. We provide detailed predictions of the key locations within these packaging-associated regions, and their structures, by applying a recently-improved pipeline for delineating constrained regions in RNA viruses and applying structural prediction algorithms. We find and characterise other known constrained regions within influenza A genomes, including the region associated with the PA-X frameshift, regions associated with alternative splicing, and constraint around the initiation motif for a truncated PB1 protein, PB1-N92, associated with avian viruses. We further predict the presence of constrained regions that have not previously been described. The extra characterisation our work provides allows investigation of these key regions for drug target potential, and points towards determinants of packaging compatibility between segments.


Sujet(s)
Biologie informatique , Virus de la grippe A , Assemblage viral , Virus de la grippe A/génétique , Assemblage viral/génétique , Biologie informatique/méthodes , Génome viral/génétique , Algorithmes , Simulation numérique , ARN viral/génétique , ARN viral/composition chimique , ARN viral/métabolisme , Humains , Virus à ARN/génétique
17.
Sci Rep ; 14(1): 9612, 2024 04 26.
Article de Anglais | MEDLINE | ID: mdl-38671077

RÉSUMÉ

The Carniolan honey bee (Apis mellifera carnica) plays an essential role in crop pollination, environment diversity, and the production of honey bee products. However, the health of individual honey bees and their colonies is under pressure due to multiple stressors, including viruses as a significant threat to bees. Monitoring various virus infections could be a crucial selection tool during queen rearing. In the present study, samples from all developmental stages (eggs, larvae, pupae, and queens) were screened for the incidence of seven viruses during queen rearing in Slovenia. The screening of a total of 108 samples from five queen breeders was performed by the RT-qPCR assays. The results showed that the highest incidence was observed for black queen cell virus (BQCV), Lake Sinai virus 3 (LSV3), deformed wing virus B (DWV-B), and sacbrood virus (SBV). The highest viral load was detected in queens (6.07 log10 copies/queen) and larvae (5.50 log10 copies/larva) for BQCV, followed by SBV in larvae (5.47 log10 copies/larva). When comparing all the honey bee developmental stages, the eggs exhibited general screening for virus incidence and load in queen mother colonies. The results suggest that analyzing eggs is a good indicator of resilience to virus infection during queen development.


Sujet(s)
Larve , Animaux , Abeilles/virologie , Larve/virologie , Virus à ARN/génétique , Virus à ARN/isolement et purification , Virus des insectes/génétique , Virus des insectes/isolement et purification , Dicistroviridae/génétique , Dicistroviridae/pathogénicité , Dicistroviridae/isolement et purification , Charge virale , Ovule/virologie , Femelle , Pupe/virologie , Slovénie/épidémiologie
18.
PLoS Biol ; 22(4): e3002600, 2024 Apr.
Article de Anglais | MEDLINE | ID: mdl-38662792

RÉSUMÉ

The signature feature of all plant viruses is the encoding of movement proteins (MPs) that supports the movement of the viral genome into adjacent cells and through the vascular system. The recent discovery of umbravirus-like viruses (ULVs), some of which only encode replication-associated proteins, suggested that they, as with umbraviruses that lack encoded capsid proteins (CPs) and silencing suppressors, would require association with a helper virus to complete an infection cycle. We examined the infection properties of 2 ULVs: citrus yellow vein associated virus 1 (CY1), which only encodes replication proteins, and closely related CY2 from hemp, which encodes an additional protein (ORF5CY2) that was assumed to be an MP. We report that both CY1 and CY2 can independently infect the model plant Nicotiana benthamiana in a phloem-limited fashion when delivered by agroinfiltration. Unlike encoded MPs, ORF5CY2 was dispensable for infection of CY2, but was associated with faster symptom development. Examination of ORF5CY2 revealed features more similar to luteoviruses/poleroviruses/sobemovirus CPs than to 30K class MPs, which all share a similar single jelly-roll domain. In addition, only CY2-infected plants contained virus-like particles (VLPs) associated with CY2 RNA and ORF5CY2. CY1 RNA and a defective (D)-RNA that arises during infection interacted with host protein phloem protein 2 (PP2) in vitro and in vivo, and formed a high molecular weight complex with sap proteins in vitro that was partially resistant to RNase treatment. When CY1 was used as a virus-induced gene silencing (VIGS) vector to target PP2 transcripts, CY1 accumulation was reduced in systemic leaves, supporting the usage of PP2 for systemic movement. ULVs are therefore the first plant viruses encoding replication and CPs but no MPs, and whose systemic movement relies on a host MP. This explains the lack of discernable helper viruses in many ULV-infected plants and evokes comparisons with the initial viruses transferred into plants that must have similarly required host proteins for movement.


Sujet(s)
Nicotiana , Maladies des plantes , Protéines de mouvement des virus de plantes , Nicotiana/virologie , Nicotiana/génétique , Nicotiana/métabolisme , Maladies des plantes/virologie , Protéines de mouvement des virus de plantes/métabolisme , Protéines de mouvement des virus de plantes/génétique , Virus à ARN/génétique , Virus à ARN/physiologie , Virus à ARN/métabolisme , Virus des plantes/physiologie , Virus des plantes/génétique , Virus des plantes/métabolisme , Virus des plantes/pathogénicité , Protéines de capside/métabolisme , Protéines de capside/génétique , ARN viral/génétique , ARN viral/métabolisme , Génome viral , Phloème/virologie , Phloème/métabolisme
19.
Science ; 384(6691): eadl0635, 2024 Apr 05.
Article de Anglais | MEDLINE | ID: mdl-38574145

RÉSUMÉ

The retractile type IV pilus (T4P) is important for virulence of the opportunistic human pathogen Pseudomonas aeruginosa. The single-stranded RNA (ssRNA) phage PP7 binds to T4P and is brought to the cell surface through pilus retraction. Using fluorescence microscopy, we discovered that PP7 detaches T4P, which impairs cell motility and restricts the pathogen's virulence. Using cryo-electron microscopy, mutagenesis, optical trapping, and Langevin dynamics simulation, we resolved the structure of PP7, T4P, and the PP7/T4P complex and showed that T4P detachment is driven by the affinity between the phage maturation protein and its bound pilin, plus the pilus retraction force and speed, and pilus bending. Pilus detachment may be widespread among other ssRNA phages and their retractile pilus systems and offers new prospects for antibacterial prophylaxis and therapeutics.


Sujet(s)
Fimbriae bactériens , Phages de Pseudomonas , Pseudomonas aeruginosa , Virus à ARN , Pénétration virale , Humains , Cryomicroscopie électronique , Protéines de fimbriae/génétique , Protéines de fimbriae/métabolisme , Fimbriae bactériens/virologie , Pseudomonas aeruginosa/pathogénicité , Pseudomonas aeruginosa/virologie , Virus à ARN/composition chimique , Virus à ARN/physiologie , Phages de Pseudomonas/composition chimique , Phages de Pseudomonas/physiologie , Protéines virales/métabolisme
20.
Viruses ; 16(4)2024 04 15.
Article de Anglais | MEDLINE | ID: mdl-38675948

RÉSUMÉ

The transmission of pathogens from reservoir to recipient host species, termed pathogen spillover, can profoundly impact plant, animal, and public health. However, why some pathogens lead to disease emergence in a novel species while others fail to establish or do not elicit disease is often poorly understood. There is strong evidence that deformed wing virus (DWV), an (+)ssRNA virus, spills over from its reservoir host, the honeybee Apis mellifera, into the bumblebee Bombus terrestris. However, the low impact of DWV on B. terrestris in laboratory experiments suggests host barriers to virus spread in this recipient host. To investigate potential host barriers, we followed the spread of DWV genotype B (DWV-B) through a host's body using RT-PCR after experimental transmission to bumblebees in comparison to honeybees. Inoculation was per os, mimicking food-borne transmission, or by injection into the bee's haemocoel, mimicking vector-based transmission. In honeybees, DWV-B was present in both honeybee faeces and haemolymph within 3 days of inoculation per os or by injection. In contrast, DWV-B was not detected in B. terrestris haemolymph after inoculation per os, suggesting a gut barrier that hinders DWV-B's spread through the body of a B. terrestris. DWV-B was, however, detected in B. terrestris faeces after injection and feeding, albeit at a lower abundance than that observed for A. mellifera, suggesting that B. terrestris sheds less DWV-B than A. mellifera in faeces when infected. Barriers to viral spread in B. terrestris following oral infection may limit DWV's impact on this spillover host and reduce its contribution to the community epidemiology of DWV.


Sujet(s)
Virus à ARN , Animaux , Abeilles/virologie , Virus à ARN/génétique , Virus à ARN/physiologie , Virus à ARN/pathogénicité , Génotype , Interactions hôte-pathogène
SÉLECTION CITATIONS
DÉTAIL DE RECHERCHE
...