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1.
BMC Oral Health ; 24(1): 662, 2024 Jun 05.
Article de Anglais | MEDLINE | ID: mdl-38840232

RÉSUMÉ

OBJECTIVE: To provide an overview of the available scientific evidence from in vitro studies regarding the effect induced by the flavonoids contained in grape seed extracts (GSE) and cranberry on the microbiological activity of Streptococcus mutans (S. mutans). METHODS: This systematic review was performed following the parameters of the PRISMA statement (Preferred Reporting Items for Systematic Reviews and Meta-Analysis). Electronic and manual searches were conducted using PubMed, ScienceDirect, Web of Science, EBSCO, and Cochrane databases. Reference lists of selected articles were reviewed to identify relevant studies. The search was not limited by year and was conducted solely in English. Eligible studies comprised publications describing in vitro studies that evaluated the effect of flavonoids derived from GSE and cranberry extracts on the microbiological activity of S. mutans. Common variables were identified to consolidate the data. Authors of this review independently screened search results, extracted data, and assessed the risk of bias. RESULTS: Of the 420 studies identified from the different databases, 22 publications were finally selected for review. The risk of bias was low in 13 articles and moderate in 9. The studies analyzed in this review revealed that cranberry extract has an inhibitory effect on the bacterial growth of S. mutans in ranges from 0.5 mg/mL to 25 mg/mL, and GSE exerts a similar effect from 0.5 mg/mL to 250 mg/mL. Additionally, the extracts or their fractions showed reduced biofilm formation capacity, decreased polymicrobial biofilm biomass, deregulation of glycosyltransferases (Gtf) B and C expression, and buffering of pH drop. In addition to adequate antioxidant activity related to polyphenol content. CONCLUSIONS: The overall results showed that the extracts of cranberry and grape seed were effective in reducing the virulence factors of the oral pathogen. According to the data, proanthocyanidins are the active components in cranberry and grape seed that effectively resist S. mutans. They can inhibit the formation of insoluble polysaccharides in the extracellular matrix and prevent glycan-mediated adhesion, cohesion, and aggregation of the proteins in S. mutans. This suggests that these natural extracts could play an important role in the prevention of cariogenic bacterial colonization, as well as induce a decrease in their microbiological activity.


Sujet(s)
Flavonoïdes , Extrait de pépins de raisin , Extraits de plantes , Streptococcus mutans , Vaccinium macrocarpon , Streptococcus mutans/effets des médicaments et des substances chimiques , Vaccinium macrocarpon/composition chimique , Extraits de plantes/pharmacologie , Flavonoïdes/pharmacologie , Extrait de pépins de raisin/pharmacologie , Biofilms/effets des médicaments et des substances chimiques , Humains , Vitis , Proanthocyanidines/pharmacologie
2.
BMC Plant Biol ; 24(1): 504, 2024 Jun 06.
Article de Anglais | MEDLINE | ID: mdl-38840239

RÉSUMÉ

The domestication process in grapevines has facilitated the fixation of desired traits. Nowadays, vegetative propagation through cuttings enables easier preservation of these genotypes compared to sexual reproduction. Nonetheless, even with vegetative propagation, various phenotypes are often present within the same vineyard due to the accumulation of somatic mutations. These mutations are not the sole factors influencing phenotype. Alongside somatic variations, epigenetic variation has been proposed as a pivotal player in regulating phenotypic variability acquired during domestication. The emergence of these epialleles might have significantly influenced grapevine domestication over time. This study aims to investigate the impact of domestication on methylation patterns in cultivated grapevines. Reduced-representation bisulfite sequencing was conducted on 18 cultivated and wild accessions. Results revealed that cultivated grapevines exhibited higher methylation levels than their wild counterparts. Differential Methylation Analysis between wild and cultivated grapevines identified a total of 9955 differentially methylated cytosines, of which 78% were hypermethylated in cultivated grapevines. Functional analysis shows that core methylated genes (consistently methylated in both wild and cultivated accessions) are associated with stress response and terpenoid/isoprenoid metabolic processes. Meanwhile, genes with differential methylation are linked to protein targeting to the peroxisome, ethylene regulation, histone modifications, and defense response. Collectively, our results highlight the significant roles that epialleles may have played throughout the domestication history of grapevines.


Sujet(s)
Produits agricoles , Méthylation de l'ADN , Domestication , Épigenèse génétique , Vitis , Vitis/génétique , Produits agricoles/génétique , Produits agricoles/croissance et développement , Phénotype
3.
Physiol Plant ; 176(3): e14380, 2024.
Article de Anglais | MEDLINE | ID: mdl-38894644

RÉSUMÉ

Phototropism movement is crucial for plants to adapt to various environmental changes. Plant P-type H+-ATPase (HA) plays diverse roles in signal transduction during cell expansion, regulation of cellular osmotic potential and stomatal opening, and circadian movement. Despite numerous studies on the genome-wide analysis of Vitis vinifera, no research has been done on the P-type H+-ATPase family genes, especially concerning pulvinus-driven leaf movement. In this study, 55 VvHAs were identified and classified into nine distinct subgroups (1 to 9). Gene members within the same subgroups exhibit similar features in motif, intron/exon, and protein tertiary structures. Furthermore, four pairs of genes were derived by segmental duplication in grapes. Cis-acting element analysis identified numerous light/circadian-related elements in the promoters of VvHAs. qRT-PCR analysis showed that several genes of subgroup 7 were highly expressed in leaves and pulvinus during leaf movement, especially VvHA14, VvHA15, VvHA16, VvHA19, VvHA51, VvHA52, and VvHA54. Additionally, we also found that the VvHAs genes were asymmetrically expressed on both sides of the extensor and flexor cell of the motor organ, the pulvinus. The expression of VvHAs family genes in extensor cells was significantly higher than that in flexor cells. Overall, this study serves as a foundation for further investigations into the functions of VvHAs and contributes to the complex mechanisms underlying grapevine pulvinus growth and development.


Sujet(s)
Régulation de l'expression des gènes végétaux , Phototropisme , Feuilles de plante , Protéines végétales , Proton-Translocating ATPases , Vitis , Vitis/génétique , Vitis/physiologie , Vitis/enzymologie , Feuilles de plante/génétique , Feuilles de plante/physiologie , Proton-Translocating ATPases/génétique , Proton-Translocating ATPases/métabolisme , Protéines végétales/génétique , Protéines végétales/métabolisme , Phototropisme/génétique , Phototropisme/physiologie , Pulvinus/génétique , Pulvinus/métabolisme , Pulvinus/physiologie , Membrane cellulaire/métabolisme , Phylogenèse , Famille multigénique
4.
PLoS One ; 19(6): e0303578, 2024.
Article de Anglais | MEDLINE | ID: mdl-38900727

RÉSUMÉ

Evaluating archaeobotanical data from over 3.9 million seeds and 124,300 charcoal fragments across 330 archaeological site phases in Southwest Asia, we reconstruct the history of olive and grape cultivation spanning a period of 6,000 years. Combining charcoal and seed data enables investigation into both the production and consumption of olive and grape. The earliest indication for olive and grape cultivation appears in the southern Levant around ca. 5000 BC and 4th millennium BC respectively, although cultivation may have been practiced prior to these dates. Olive and grape cultivation in Southwest Asia was regionally concentrated within the Levant until 600 BC, although there were periodic pushes to the East. Several indications for climate influencing the history of olive and grape cultivation were found, as well as a correlation between periods of high population density and high proportions of olive and grape remains in archaeological sites. While temporal uncertainty prevents a detailed understanding of the causal mechanisms behind these correlations, we suggest that long distance trade in olives, grapes and their associated products was integral to the economic, social, and demographic trajectories of the region.


Sujet(s)
Archéologie , Charbon de bois , Olea , Graines , Vitis , Vitis/croissance et développement , Olea/croissance et développement , Graines/croissance et développement , Humains , Histoire ancienne , Asie , Agriculture/histoire
5.
Funct Plant Biol ; 512024 Jun.
Article de Anglais | MEDLINE | ID: mdl-38902904

RÉSUMÉ

Potassium (K) is essential for the development of grapevines (Vitis vinifera ), accumulating into berries during maturation. Elevated K has been associated with high sugar and low acidity in juice. Characterising the accumulation patterns of K and other components in pericarps treated with various experimental factors may indicate potential regulators of berry K levels. A soil fertiliser trial using nutrient solutions with two K supply rates was conducted on potted Shiraz vines during berry ripening. Doubled-K supply increased L-malic acid content in the early-ripening phase, and increased K and magnesium concentrations in the late-ripening phase. Doubled-K supply reduced the ratio of K to sodium in later ripening phases, suggesting that the accumulation of K relative to sodium was limited in more mature berries supplied with extra K. Pericarp water percentage, sugar, K and ATP were correlated in both treatments, indicating links between hydration, solute transport and energy in maturing berries. In a separate rootstock trial over the two growing seasons, Shiraz scions grafted onto 420-A rootstock produced berries with lower K concentration and content than those grafted onto Ramsey or Ruggeri-140 rootstocks and own-rooted vines. This study demonstrated that the K supply and berry ripening phase impacted the berry K level.


Sujet(s)
Fruit , Racines de plante , Potassium , Vitis , Eau , Potassium/métabolisme , Fruit/métabolisme , Fruit/croissance et développement , Vitis/croissance et développement , Vitis/métabolisme , Eau/métabolisme , Racines de plante/métabolisme , Racines de plante/croissance et développement , Sodium/métabolisme
6.
Environ Microbiol ; 26(6): e16660, 2024 Jun.
Article de Anglais | MEDLINE | ID: mdl-38822592

RÉSUMÉ

Over 6 years, we conducted an extensive survey of spontaneous grape fermentations, examining 3105 fungal microbiomes across 14 distinct grape-growing regions. Our investigation into the biodiversity of these fermentations revealed that a small number of highly abundant genera form the core of the initial grape juice microbiome. Consistent with previous studies, we found that the region of origin had the most significant impact on microbial diversity patterns. We also discovered that certain taxa were consistently associated with specific geographical locations and grape varieties, although these taxa represented only a minor portion of the overall diversity in our dataset. Through unsupervised clustering and dimensionality reduction analysis, we identified three unique community types, each exhibiting variations in the abundance of key genera. When we projected these genera onto global branches, it suggested that microbiomes transition between these three broad community types. We further investigated the microbial community composition throughout the fermentation process. Our observations indicated that the initial microbial community composition could predict the diversity during the early stages of fermentation. Notably, Hanseniaspora uvarum emerged as the primary non-Saccharomyces species within this large collection of samples.


Sujet(s)
Biodiversité , Fermentation , Champignons , Mycobiome , Vitis , Vitis/microbiologie , Champignons/classification , Champignons/génétique , Champignons/métabolisme , Champignons/isolement et purification , Microbiote
7.
Food Res Int ; 188: 114480, 2024 Jul.
Article de Anglais | MEDLINE | ID: mdl-38823868

RÉSUMÉ

The wine sector is working to add value, enhance sustainability and reduce waste, yet often creating new products with unknown consumer acceptance. Verjuice, juice made from discarded unripe thinned grapes, is an example. Whilst verjuice has various culinary uses, its versatility in beverages continues to expand. However, its sensory drivers of liking when consumed as a drink, and their potential impact on its application remain unclear. Chemical drivers of sensory characteristics are also unknown representing a critical knowledge gap needed to guide product innovation. This study aimed to provide new knowledge regarding consumer acceptability of verjuice by identifying its sensory drivers of liking as a beverage, evaluating its potential use in different applications and identifying chemical drivers of its sensory characteristics. New Zealand consumers (n = 93) evaluated 13 verjuice samples from different countries. Furthermore, verjuice familiarity and its influence on emotional response was investigated to determine likely future consumer engagement. Sweetness was the most positive driver of liking in verjuice overall, followed by fruity and floral notes, smoothness, and to a lesser extent citrus flavour. Consumers expressed varied preferences for verjuice's sensory profile, with fruity, floral, and honey flavours driving beverage application, whilst winey and green apple notes were more associated with culinary scenarios. Some association between chemical parameters and sensory attributes were evident (e.g. sugars were highly associated with perceived sweetness, fruity, and floral attributes; these attributes also shared proximity with 1-hexanol and cyclohexanol). The general idea of verjuice elicited positive valence emotions, but consumers who were 'not familiar' felt more curious, and those 'familiar' felt happier and more satisfied. Findings highlight the potential to tailor verjuice for specific applications by understanding desired sensory profiles and related chemical parameters. Recognising the interplay between familiarity level and emotional response is crucial for positioning the product in the marketplace and fostering consumer engagement. Marketing initiatives are needed to increase verjuice familiarity and support product innovation, leading to increased product appeal.


Sujet(s)
Comportement du consommateur , Préférences alimentaires , Goût , Humains , Femelle , Adulte , Mâle , Jeune adulte , Adulte d'âge moyen , Nouvelle-Zélande , Vitis/composition chimique , Adolescent , Sujet âgé , Jus de fruits et de légumes/analyse
8.
Physiol Plant ; 176(3): e14383, 2024.
Article de Anglais | MEDLINE | ID: mdl-38859677

RÉSUMÉ

The effects of transient increases in UVB radiation on plants are not well known; whether cumulative damage dominates or, alternately, an increase in photoprotection and recovery periods ameliorates any negative effects. We investigated photosynthetic capacity and metabolite accumulation of grapevines (Vitis vinifera Cabernet Sauvignon) in response to UVB fluctuations under four treatments: fluctuating UVB (FUV) and steady UVB radiation (SUV) at similar total biologically effective UVB dose (2.12 and 2.23 kJ m-2 day-1), and their two respective no UVB controls. We found a greater decrease in stomatal conductance under SUV than FUV. There was no decrease in maximum yield of photosystem II (Fv/Fm) or its operational efficiency (ɸPSII) under the two UVB treatments, and Fv/Fm was higher under SUV than FUV. Photosynthetic capacity was enhanced under FUV in the light-limited region of rapid light-response curves but enhanced by SUV in the light-saturated region. Flavonol content was similarly increased by both UVB treatments. We conclude that, while both FUV and SUV effectively stimulate acclimation to UVB radiation at realistic doses, FUV confers weaker acclimation than SUV. This implies that recovery periods between transient increases in UVB radiation reduce UVB acclimation, compared to an equivalent dose of UVB provided continuously. Thus, caution is needed in interpreting the findings of experiments using steady UVB radiation treatments to infer effects in natural environments, as the stimulatory effect of steady UVB is greater than that of the equivalent fluctuating UVB.


Sujet(s)
Acclimatation , Photosynthèse , Complexe protéique du photosystème II , Rayons ultraviolets , Vitis , Photosynthèse/effets des radiations , Photosynthèse/physiologie , Acclimatation/effets des radiations , Acclimatation/physiologie , Vitis/effets des radiations , Vitis/physiologie , Vitis/métabolisme , Complexe protéique du photosystème II/métabolisme , Chlorophylle/métabolisme , Stomates de plante/physiologie , Stomates de plante/effets des radiations , Flavonols/métabolisme
9.
Molecules ; 29(11)2024 May 26.
Article de Anglais | MEDLINE | ID: mdl-38893385

RÉSUMÉ

Cabernet Sauvignon from the California Paso Robles AVA was processed with a contrasting array of cap management frequencies, consisting of punch-down (PD) frequencies (0, 1, 2, and 3 PD/day) over two vintages, one of which the fruit was harvested at two contrasting maturity levels. Wines followed with up to 3 years of bottle aging for basic and phenolic chemistry, and the wines of the second harvest of 2020 were submitted to sensory analysis. There were almost non-existent effects due to the frequency of punch downs on parameters such as ethanol, pH, titratable acidity, lactic acid, and glucose + fructose. In 2019, the chromatic differences between different PD regimes were subtle, and minor effects of the punch-down frequency were observed for tannins and total phenolics. During the early stages of alcoholic fermentation, higher levels of all anthocyanin classes were observed in 1 PD wines and the lowest levels in 0 PD wines. The anthocyanin content of the wines of the first harvest (unripe) was 27% higher than that of the wines of the second harvest (ripe), but these differences disappeared after 3 years of bottle aging irrespective of the vintage and harvest date. Acylated anthocyanins were preferentially lost during aging, especially in 2019 wines and, to a lesser extent, in 2020 wines. In 2020, the polymeric pigment content of the wines of the second harvest was higher than in the wines of the first harvest, with 3 PD wines showing higher polymeric pigments and yellow hues than 0 and 2 PD wines after 3 years of bottle aging. Sensory analysis of the second harvest of the 2020 wines showed that the wines of all four PD regimes were perceived as drying, signifying they were perceived as equally astringent, which is consistent with comparable tannin levels on said wines. The perception of bitterness increased with the frequency of punch downs; thus, 3 PD wines showed the highest bitterness perception. It was concluded that in sufficiently warm fermentations and small volumes, phenolic extraction occurs regardless of fruit maturity and under conditions of minimum mixing.


Sujet(s)
Phénols , Vitis , Vin , Vin/analyse , Phénols/analyse , Vitis/composition chimique , Anthocyanes/analyse , Californie , Goût , Fruit/composition chimique , Humains , Fermentation
10.
Molecules ; 29(11)2024 Jun 02.
Article de Anglais | MEDLINE | ID: mdl-38893495

RÉSUMÉ

Muscadine grapes are characterized by their large and abundant seeds and hard and thick skins that contain significant amounts of dietary fiber (DF). The current study investigated the chemical constituents, molecular architecture, and physicochemical attributes of DF derived from Muscadine grapes (Granny Val and Alachua) and compared them with those derived from Shine Muscat and Kyoho. Using a combined enzymatic method, the total dietary fiber (TDF) was extracted and divided into two parts: soluble dietary fiber (SDF) and insoluble dietary fiber (IDF). TDF (mainly IDF, with a small fraction of SDF) was dominated by cellulose, followed by pectin and hemicellulose. In addition, Granny Val and Alachua had a significantly higher abundance of TDF and IDF compared with Shine Muscat and Kyoho. Moreover, Shine Muscat had significantly the highest abundance of SDF among the four grape varieties. Of note, IDF from Granny Val and Alachua exhibited a complex and dense texture on its surface, and notably outperformed Shine Muscat and Kyoho in terms of cholesterol, fatty acid, heavy metal adsorption, and antioxidant activity. Collectively, Muscadine grapes, i.e., Granny Val and Alachua in the current study, possessed elevated DF levels (predominantly IDF), and their enhanced bioactivity underscored their potential as a potential food ingredient for further use.


Sujet(s)
Fibre alimentaire , Vitis , Vitis/composition chimique , Fibre alimentaire/analyse , Antioxydants/composition chimique , Antioxydants/analyse , Cellulose/composition chimique
11.
Molecules ; 29(11)2024 Jun 05.
Article de Anglais | MEDLINE | ID: mdl-38893553

RÉSUMÉ

Grape pomace is the main by-product obtained from wine production that is still enriched in bioactive compounds. Within a framework of waste/by-product reuse through a sustainable approach, various green methods were utilized in this work to recover anthocyanins from the pomace resulting from "Sangiovese" grape vinification. Ultrasound- and Microwave-Assisted Extractions (UAE and MAE) were coupled with the use of green solvents, such as acidified water, an ethanol/water mixture, and Natural Deep Eutectic Solvents (NaDES), and their efficacy was compared with that of a conventional method based on a methanol/acidified water mixture. The Total Anthocyanin Index ranged from 36.9 to 75.2 mg/g DW for UAE, and from 54.4 to 99.6 mg/g DW for MAE, while resulting in 47.1 mg/g DW for conventional extraction. A Design of Experiments (DoE) approach was applied to MAE, the most efficient technique. Temperature, time, and the solid-to-liquid ratio were set as X variables, while malvidin-3-O-glucoside content and antioxidant activity were used as response variables, measured by High-Performance Liquid Chromatography with Diode Array Detection (HPLC-DAD) and 2,2-Diphenyl-1-picrylhydrazyl (DPPH) assay, respectively. The correlation between temperature and time and the antioxidant activity of the extract was positive, while it was found to be negative when considering malvidin-3-O-glucoside concentration as a response variable. Thus, the optimal conditions in temperature, time and solid-to-liquid ratio were different depending on the chosen variable. The results underline the importance of selecting an accurate response when using the response surface methodology approach.


Sujet(s)
Anthocyanes , Antioxydants , Technologie de la chimie verte , Micro-ondes , Vitis , Anthocyanes/composition chimique , Anthocyanes/analyse , Anthocyanes/isolement et purification , Vitis/composition chimique , Technologie de la chimie verte/méthodes , Chromatographie en phase liquide à haute performance/méthodes , Antioxydants/composition chimique , Antioxydants/analyse , Extraits de plantes/composition chimique , Solvants/composition chimique , Vin/analyse
12.
Int J Mol Sci ; 25(11)2024 May 29.
Article de Anglais | MEDLINE | ID: mdl-38892099

RÉSUMÉ

Global warming has caused such problems as the poor coloration of grape skin and the decreased production of high-quality berries. We investigated the effect of synephrine (Syn) on anthocyanin accumulation. Anthocyanin accumulation in cultured grape cells treated with Syn at concentrations of 1 mM or higher showed no significant difference, indicating that the accumulation was concentration-independent. On the other hand, anthocyanin accumulation was dependent on the compound used for treatment. The sugar/acid ratio of the juice from berries treated with Syn did not differ from the control. The expression of anthocyanin-biosynthesis-related genes, but not phytohormones, was increased by the treatment with Syn at 24 h or later. The Syn treatment of cultured cells increased SOD3 expression and hydrogen peroxide (H2O2) production from 3 to 24 h after treatment. Subsequently, the expression of CAT and APX6 encoding H2O2-scavenging enzymes was also increased. Treatment of cultured cells with Syn and H2O2 increased the expression of the H2O2-responsive gene Chit4 and the anthocyanin-biosynthesis-related genes mybA1 and UFGT 4 days after the treatment and increased anthocyanin accumulation 7 days after the treatment. On the other hand, the treatment of berries with Syn and H2O2 increased anthocyanin accumulation after 9 days. These results suggest that Syn increases anthocyanin accumulation through H2O2 production without changing phytohormone biosynthesis. Syn is expected to improve grape skin coloration and contribute to high-quality berry production.


Sujet(s)
Anthocyanes , Régulation de l'expression des gènes végétaux , Peroxyde d'hydrogène , Facteur de croissance végétal , Synéphrine , Vitis , Peroxyde d'hydrogène/métabolisme , Anthocyanes/biosynthèse , Anthocyanes/métabolisme , Vitis/métabolisme , Vitis/génétique , Vitis/effets des médicaments et des substances chimiques , Facteur de croissance végétal/pharmacologie , Facteur de croissance végétal/métabolisme , Régulation de l'expression des gènes végétaux/effets des médicaments et des substances chimiques , Synéphrine/pharmacologie , Synéphrine/métabolisme , Fruit/métabolisme , Fruit/génétique , Protéines végétales/métabolisme , Protéines végétales/génétique
13.
Int J Mol Sci ; 25(11)2024 May 30.
Article de Anglais | MEDLINE | ID: mdl-38892171

RÉSUMÉ

SNARE proteins (soluble N-ethylmaleimide-sensitive factor attachment protein receptors) play a key role in mediating a variety of plant biological processes. Currently, the function of the SNARE gene family in phytohormonal and abiotic stress treatments in grapevine is currently unknown, making it worthwhile to characterize and analyze the function and expression of this family in grapevine. In the present study, 52 VvSNARE genes were identified and predominantly distributed on 18 chromosomes. Secondary structures showed that the VvSNARE genes family irregular random coils and α-helices. The promoter regions of the VvSNARE genes were enriched for light-, abiotic-stress-, and hormone-responsive elements. Intraspecific collinearity analysis identified 10 pairs collinear genes within the VvSNARE family and unveiled a greater number of collinear genes between grapevine and apple, as well as Arabidopsis thaliana, but less associations with Oryza sativa. Quantitative real-time PCR (qRT-PCR) analyses showed that the VvSNARE genes have response to treatments with ABA, NaCl, PEG, and 4 °C. Notably, VvSNARE2, VvSNARE14, VvSNARE15, and VvSNARE17 showed up-regulation in response to ABA treatment. VvSNARE2, VvSNARE15, VvSNARE18, VvSNARE19, VvSNARE20, VvSNARE24, VvSNARE25, and VvSNARE29 exhibited significant up-regulation when exposed to NaCl treatment. The PEG treatment led to significant down-regulation of VvSNARE1, VvSNARE8, VvSNARE23, VvSNARE25, VvSNARE26, VvSNARE31, and VvSNARE49 gene expression. The expression levels of VvSNARE37, VvSNARE44, and VvSNARE46 were significantly enhanced after exposure to 4 °C treatment. Furthermore, subcellular localization assays certified that VvSNARE37, VvSNARE44, and VvSNARE46 were specifically localized at the cell membrane. Overall, this study showed the critical role of the VvSNARE genes family in the abiotic stress response of grapevines, thereby providing novel candidate genes such as VvSNARE37, VvSNARE44, and VvSNARE46 for further exploration in grapevine stress tolerance research.


Sujet(s)
Évolution moléculaire , Régulation de l'expression des gènes végétaux , Phylogenèse , Facteur de croissance végétal , Protéines végétales , Stress physiologique , Vitis , Vitis/génétique , Vitis/métabolisme , Stress physiologique/génétique , Facteur de croissance végétal/pharmacologie , Facteur de croissance végétal/métabolisme , Protéines végétales/génétique , Protéines végétales/métabolisme , Régions promotrices (génétique) , Famille multigénique
14.
Sci Rep ; 14(1): 14510, 2024 06 24.
Article de Anglais | MEDLINE | ID: mdl-38914605

RÉSUMÉ

Grape cultivation is important globally, contributing to the agricultural economy and providing diverse grape-based products. However, the susceptibility of grapes to disease poses a significant threat to yield and quality. Traditional disease identification methods demand expert knowledge, which limits scalability and efficiency. To address these limitations our research aims to design an automated deep learning approach for grape leaf disease detection. This research introduces a novel dual-track network for classifying grape leaf diseases, employing a combination of the Swin Transformer and Group Shuffle Residual DeformNet (GSRDN) tracks. The Swin Transformer track exploits shifted window techniques to construct hierarchical feature maps, enhancing global feature extraction. Simultaneously, the GSRDN track combines Group Shuffle Depthwise Residual block and Deformable Convolution block to extract local features with reduced computational complexity. The features from both tracks are concatenated and processed through Triplet Attention for cross-dimensional interaction. The proposed model achieved an accuracy of 98.6%, the precision, recall, and F1-score are recorded as 98.7%, 98.59%, and 98.64%, respectively as validated on a dataset containing grape leaf disease information from the PlantVillage dataset, demonstrating its potential for efficient grape disease classification.


Sujet(s)
Maladies des plantes , Feuilles de plante , Vitis , Vitis/classification , Maladies des plantes/parasitologie , Apprentissage profond , Algorithmes
15.
BMC Plant Biol ; 24(1): 595, 2024 Jun 25.
Article de Anglais | MEDLINE | ID: mdl-38914931

RÉSUMÉ

BACKGROUND: Monoterpenes are among the most important volatile aromatic compounds contributing to the flavor and aroma of grapes and wine. However, the molecular basis of monoterpene biosynthesis has not yet been fully elucidated. RESULTS: In our study, transcriptomics and gas chromatography-mass spectrometry (GC-MS) were used to mine candidate genes and transcription factors involved in monoterpene biosynthesis between high-monoterpene and zero-monoterpene table grape cultivars. We found that monoterpene biosynthesis was positively correlated by the expression of five genes encoding 1-deoxy-D-xylulose-5-phosphate synthase (VvDXSs), one encoding 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (VvHDR), three hydroxy-3-methylglutaryl-CoA synthases (VvHMGSs) and one mevalonate kinase (VvMVK), whereas the expression of one isopentenyl diphosphate isomerase (VvIDI) and one 3-hydroxy-3-methylglutaryl-CoA reductase (VvHMGR) negatively correlated monoterpene biosynthesis. Of these genes, VvIDI was selected to validate its function in monoterpene accumulation through a transient overexpression experiment, and was shown to inhibit the biosynthesis of grape linalool and α-terpineol. Meanwhile, we found that a 64-amino acid extension sequence at the N-terminus can guide the VvIDI protein to target the chloroplast. CONCLUSIONS: The findings of this study should help to guide future functional analysis of key genes as well as mining the potential regulatory mechanism of monoterpene biosynthesis in grapes and grape products.


Sujet(s)
Carbon-carbon double bond isomerases , Monoterpènes , Vitis , Vitis/génétique , Vitis/enzymologie , Vitis/métabolisme , Monoterpènes/métabolisme , Carbon-carbon double bond isomerases/métabolisme , Carbon-carbon double bond isomerases/génétique , Transcriptome , Protéines végétales/génétique , Protéines végétales/métabolisme , Régulation de l'expression des gènes végétaux , Chromatographie gazeuse-spectrométrie de masse , Odorisants , Hémiterpènes
16.
Int J Mol Sci ; 25(11)2024 Jun 05.
Article de Anglais | MEDLINE | ID: mdl-38892428

RÉSUMÉ

WRKYs are a multigenic family of transcription factors that are plant-specific and involved in the regulation of plant development and various stress response processes. However, the evolution of WRKY genes is not fully understood. This family has also been incompletely studied in grapevine, and WRKY genes have been named with different numbers in different studies, leading to great confusion. In this work, 62 Vitis vinifera WRKY genes were identified based on six genomes of different cultivars. All WRKY genes were numbered according to their chromosomal location, and a complete revision of the numbering was performed. Amino acid variability between different cultivars was assessed for the first time and was greater than 5% for some WRKYs. According to the gene structure, all WRKYs could be divided into two groups: more exons/long length and fewer exons/short length. For the first time, some chimeric WRKY genes were found in grapevine, which may play a specific role in the regulation of different processes: VvWRKY17 (an N-terminal signal peptide region followed by a non-cytoplasmic domain) and VvWRKY61 (Frigida-like domain). Five phylogenetic clades A-E were revealed and correlated with the WRKY groups (I, II, III). The evolution of WRKY was studied, and we proposed a WRKY evolution model where there were two dynamic phases of complexity and simplification in the evolution of WRKY.


Sujet(s)
Évolution moléculaire , Génome végétal , Phylogenèse , Protéines végétales , Facteurs de transcription , Vitis , Vitis/génétique , Facteurs de transcription/génétique , Facteurs de transcription/métabolisme , Protéines végétales/génétique , Protéines végétales/métabolisme , Régulation de l'expression des gènes végétaux , Famille multigénique , Séquence d'acides aminés
17.
Sci Rep ; 14(1): 10124, 2024 05 02.
Article de Anglais | MEDLINE | ID: mdl-38698114

RÉSUMÉ

Despite the high energetic cost of the reduction of sulfate to H2S, required for the synthesis of sulfur-containing amino acids, some wine Saccharomyces cerevisiae strains have been reported to produce excessive amounts of H2S during alcoholic fermentation, which is detrimental to wine quality. Surprisingly, in the presence of sulfite, used as a preservative, wine strains produce more H2S than wild (oak) or wine velum (flor) isolates during fermentation. Since copper resistance caused by the amplification of the sulfur rich protein Cup1p is a specific adaptation trait of wine strains, we analyzed the link between copper resistance mechanism, sulfur metabolism and H2S production. We show that a higher content of copper in the must increases the production of H2S, and that SO2 increases the resistance to copper. Using a set of 51 strains we observed a positive and then negative relation between the number of copies of CUP1 and H2S production during fermentation. This complex pattern could be mimicked using a multicopy plasmid carrying CUP1, confirming the relation between copper resistance and H2S production. The massive use of copper for vine sanitary management has led to the selection of resistant strains at the cost of a metabolic tradeoff: the overproduction of H2S, resulting in a decrease in wine quality.


Sujet(s)
Cuivre , Fermentation , Sulfure d'hydrogène , Métallothionéine , Odorisants , Saccharomyces cerevisiae , Vitis , Vin , Vin/analyse , Cuivre/métabolisme , Vitis/microbiologie , Saccharomyces cerevisiae/métabolisme , Sulfure d'hydrogène/métabolisme , Odorisants/analyse , Protéines de Saccharomyces cerevisiae/génétique , Protéines de Saccharomyces cerevisiae/métabolisme , Sulfites/pharmacologie , Lutte contre les nuisibles/méthodes
18.
Int J Mol Sci ; 25(10)2024 May 14.
Article de Anglais | MEDLINE | ID: mdl-38791373

RÉSUMÉ

Climate change will pose a challenge for the winemaking sector worldwide, bringing progressively drier and warmer conditions and increasing the frequency and intensity of weather extremes. The short-term adaptation strategy of applying biostimulants through foliar application serves as a crucial measure in mitigating the detrimental effects of environmental stresses on grapevine yield and berry quality. The aim of this study was to evaluate the effect of foliar application of a seaweed-based biostimulant (A. nodosum-ANE) and glycine betaine (GB) on berry quality, phenolic compounds, and antioxidant activity and to elucidate their action on the secondary metabolism. A trial was installed in a commercial vineyard (cv. "Touriga Franca") in the Cima Corgo (Upper Corgo) sub-region of the Douro Demarcated Region, Portugal. A total of four foliar sprayings were performed during the growing season: at flowering, pea size, bunch closer, and veraison. There was a positive effect of GB in the berry quality traits. Both ANE and GB increased the synthesis of anthocyanins and other phenolics in berries and influenced the expression of genes related to the synthesis and transport of anthocyanins (CHS, F3H, UFGT, and GST). So, they have the potential to act as elicitors of the secondary metabolism, leading to improved grape quality, and also to set the foundation for sustainable agricultural practices in the long run.


Sujet(s)
Antioxydants , Bétaïne , Fruit , Régulation de l'expression des gènes végétaux , Phénols , Algue marine , Vitis , Vitis/effets des médicaments et des substances chimiques , Vitis/génétique , Vitis/métabolisme , Antioxydants/pharmacologie , Antioxydants/métabolisme , Bétaïne/pharmacologie , Fruit/effets des médicaments et des substances chimiques , Fruit/métabolisme , Fruit/composition chimique , Fruit/génétique , Phénols/métabolisme , Régulation de l'expression des gènes végétaux/effets des médicaments et des substances chimiques , Algue marine/métabolisme , Anthocyanes/biosynthèse
19.
Int J Biol Macromol ; 269(Pt 2): 132144, 2024 Jun.
Article de Anglais | MEDLINE | ID: mdl-38729476

RÉSUMÉ

Herein, we investigated the synergistic effects of jet milling (JM) and deep eutectic solvent (DES) pretreatment on the fractionation of grapevine lignin and the consequent enhancement of enzymatic hydrolysis. Grapevine, a substantial byproduct of the wine industry, was subjected to JM pretreatment to produce finely powdered particles (median diameter D50 = 98.90), which were then further treated with acidic ChCl-LA and alkaline K2CO3-EG DESs. The results revealed that the combined JM + ChCl-LA pretreatment significantly increased the cellulose preservation under optimal conditions (110 °C, 4 h, and 20 % water content), achieving removal rates of 74.18 % xylan and 66.05 % lignin, respectively. The pretreatment temperature and inhibitor production were reduced, resulting in a remarkable threefold increase in glucose yield compared to untreated samples. Moreover, the structural analysis of the pretreated lignin indicated an enrichment of phenolic units, leading to enhanced antioxidant and antibacterial activities, particularly in the JM pretreated samples. These findings underscore the promising potential of the synergistic JM and DES pretreatment in facilitating the efficient utilization of grapevine lignocellulosic biomass for sustainable biorefinery technologies.


Sujet(s)
Solvants eutectiques profonds , Lignine , Vitis , Lignine/composition chimique , Vitis/composition chimique , Hydrolyse , Solvants eutectiques profonds/composition chimique , Fractionnement chimique/méthodes , Antioxydants/composition chimique , Antioxydants/pharmacologie , Biomasse , Cellulose/composition chimique , Cellulase/composition chimique , Cellulase/métabolisme , Solvants/composition chimique , Température
20.
Int J Biol Macromol ; 269(Pt 2): 132279, 2024 Jun.
Article de Anglais | MEDLINE | ID: mdl-38734344

RÉSUMÉ

Aptasensors for detection of ochratoxin A (OTA) have been extensively studied, but the majority of them require costly and large-scale equipment as signal readers. Herein, a photothermal aptasensor capable of portable detection of OTA through a thermometer was developed on basis of aptamer structural switching and rolling circle amplification (RCA)-enriched DNAzyme. Oligonucleotides and alkaline phosphatase (ALP) modified magnetic beads were prepared. The binding of aptamers to OTA led to the release of ALP labeled complementary DNA. After magnetic separation, ALP catalyzed the padlock dephosphorylation, inhibiting the subsequent RCA reaction. This process converted the OTA concentration into the amount of the photothermal reagent oxTMB produced from the catalytic reaction induced by RCA-enriched DNAzyme. Under the optimal conditions, the detection limit (LOD) of this aptasensor was 2.28 nM in a clean buffer, while the LOD reached 2.43 nM in 2 % grape juice. The good performance of the photothermal aptasensor makes it possible to measure OTA pollution in low resource environments.


Sujet(s)
Aptamères nucléotidiques , Techniques de biocapteur , ADN catalytique , Jus de fruits et de légumes , Limite de détection , Techniques d'amplification d'acides nucléiques , Ochratoxines , Vitis , Ochratoxines/analyse , ADN catalytique/composition chimique , ADN catalytique/métabolisme , Aptamères nucléotidiques/composition chimique , Techniques d'amplification d'acides nucléiques/méthodes , Jus de fruits et de légumes/analyse , Techniques de biocapteur/méthodes , Vitis/composition chimique , Contamination des aliments/analyse
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