Biologging as an important tool to uncover behaviors of cryptic species: an analysis of giant armadillos (Priodontes maximus).

Advances in biologging have increased the understanding of how animals interact with their environment, especially for cryptic species. For example, giant armadillos (Priodontes maximus) are the largest extant species of armadillo but are rarely encountered due to their fossorial and nocturnal behavior. Through the analysis of speed, turning angles, and accelerometer activity counts, we estimated behavioral states, characterized activity budgets, and investigated the state-habitat associations exhibited by individuals monitored with GPS telemetry in the Brazilian Pantanal from 2019 to 2020. This methodology is proposed as a useful framework for the identification of priority habitat. Using the non-parametric Bayesian mixture model for movement (M3), we estimated four latent behavioral states that were named 'vigilance-excavation', 'local search', 'exploratory', and 'transit'. These states appeared to correspond with behavior near burrows or termite mounds, foraging, ranging, and rapid movements, respectively. The first and last hours of activity presented relatively high proportions of the vigilance-excavation state, while most of the activity period was dominated by local search and exploratory states. The vigilance-excavation state occurred more frequently in regions between forest and closed savannas, whereas local search was more likely in high proportions of closed savanna. Exploratory behavior probability increased in areas with high proportions of both forest and closed savanna. Our results establish a baseline for behavioral complexity, activity budgets, and habitat associations in a relatively pristine environment that can be used for future work to investigate anthropogenic impacts on giant armadillo behavior and fitness. The integration of accelerometer and GPS-derived movement data through our mixture model has the potential to become a powerful methodological approach for the conservation of other cryptic species.

What a few hairs can tell us about the resource use of giant armadillos.

Understanding of resource requirements of vulnerable species is key for conservation planning. Here, we used stable carbon (δ13 C) and nitrogen isotopes (δ15 N) of hair from giant armadillos (Priodontes maximus) to understand individual resource use. We collected hair from 19 giant armadillos analyzing 34 samples from the Brazilian Pantanal and compared the resource use between sexes and age classes. We also assessed the relationship of isotopic values with individuals' body mass and the habitat type used. We observed a wide variation in resource use by giant armadillos, showing that individuals consume prey that feeds on distinct resources and occupies different habitat types, indicating that there is individual variation in foraging behavior. Most giant armadillos presented a mixed diet (C3 /C4 resources, forests/open areas), but a quarter of individuals had strictly C4 diets (open areas). Males are more prone to forage on C4 resources, presenting an isotopic niche 2.6-times larger than that of females. Subadults presented diets more associated with habitats with high arboreal cover (C3 resources, forests), while adults foraged more in open areas (C4 resources). This result is mirrored by the positive relationship between δ13 C values and body mass, suggesting that larger giant armadillos tend to feed more in open areas. We observed that δ13 C values decreased as individuals increased the use of habitats with high arboreal cover. We stress the importance of conserving the natural mosaic in the Pantanal landscape for the species persistence, given that giant armadillos require all habitat types to fulfill their dietary, spatial, and developmental needs.

Automatic selection of the number of clusters using Bayesian clustering and sparsity-inducing priors.

Clustering is a ubiquitous task in ecological and environmental sciences and multiple methods have been developed for this purpose. Because these clustering methods typically require users to a priori specify the number of groups, the standard approach is to run the algorithm for different numbers of groups and then choose the optimal number using a criterion (e.g., AIC or BIC). The problem with this approach is that it can be computationally expensive to run these clustering algorithms multiple times (i.e., for different numbers of groups) and some of these information criteria can lead to an overestimation of the number of groups. To address these concerns, we advocate for the use of sparsity-inducing priors within a Bayesian clustering framework. In particular, we highlight how the truncated stick-breaking (TSB) prior, a prior commonly adopted in Bayesian nonparametrics, can be used to simultaneously determine the number of groups and estimate model parameters for a wide range of Bayesian clustering models without requiring the fitting of multiple models. We illustrate the ability of this prior to successfully recover the true number of groups for three clustering models (two types of mixture models, applied to GPS movement data and species occurrence data, as well as the species archetype model) using simulated data in the context of movement ecology and community ecology. We then apply these models to armadillo movement data in Brazil, plant occurrence data from Alberta (Canada), and bird occurrence data from North America. We believe that many ecological and environmental sciences applications will benefit from Bayesian clustering methods with sparsity-inducing priors given the ubiquity of clustering and the associated challenge of determining the number of groups. Two R packages, EcoCluster and bayesmove, are provided that enable the straightforward fitting of these models with the TSB prior.

The role of environmental temperature on movement patterns of giant anteaters.

Mammals can show conspicuous behavioral responses to thermal variation, including changes in movement patterns. We used an integrative approach to understand how environmental temperature can drive the movement behavior of a mammal with low capacity for physiological thermoregulation, the giant anteater (Myrmecophaga tridactyla). We tracked 52 giant anteaters in 7 areas throughout the Brazilian savannah. We estimated the distance moved, area used, use of forest areas, and mean environmental temperature for each monitoring day of each individual. We modeled these data with Mixed Structural Equations - considering the possible interactions between our variables and controlling for sex and body mass. Giant anteaters reduced displacement and increased forest use with decreasing environmental temperature, probably because of their low body heat production. It is possible that they reduce distance moved and area used by reducing the duration of activity. With decreasing temperature, forest habitats become warmer than open ones, besides buffer rain and chilly winds. Reducing displacement and using forests are important strategies to reduce body heat loss and the energetic costs of thermoregulation. However, decreasing movement can limit food access and, consequently, fitness. Therefore, we highlight the importance of forests as thermal shelters. With increasing frequency and intensity of extreme weather events, we showed the need to preserve forest patches to offer suitable conditions for tropical mammals' behavioral thermoregulation. In this context, policies favoring deforestation on Brazilian territory are especially worrisome. Finally, we emphasize the need of integrative approaches to understand the complex interactions between organisms and the environment.

Sexual, allometric and forest cover effects on giant anteaters' movement ecology.

Knowing the influence of intrinsic and environmental traits on animals' movement is a central interest of ecology and can aid to enhance management decisions. The giant anteater (Myrmecophaga tridactyla) is a vulnerable mammal that presents low capacity for physiological thermoregulation and uses forests as thermal shelters. Here, we aim to provide reliable estimates of giant anteaters' movement patterns and home range size, as well as untangle the role of intrinsic and environmental drivers on their movement. We GPS-tracked 19 giant anteaters in Brazilian savannah. We used a continuous-time movement model to estimate their movement patterns (described by home range crossing time, daily distance moved and directionality), and provide an autocorrelated kernel density estimate of home range size. Then, we used mixed structural equations to integratively model the effects of sex, body mass and proportion of forest cover on movement patterns and home range size, considering the complex net of interactions between these variables. Male giant anteaters presented more intensive space use and larger home range than females with similar body mass, as it is expected in polygynous social mating systems. Males and females increased home range size with increasing body mass, but the allometric scaling of intensity of space use was negative for males and positive for females, indicating different strategies in search for resources. With decreasing proportion of forest cover inside their home ranges, and, consequently, decreasing thermal quality of their habitat, giant anteaters increased home range size, possibly to maximize the chances of accessing thermal shelters. As frequency and intensity of extreme weather events and deforestation are increasing, effective management efforts need to consider the role of forests as an important thermal resource driving spatial requirements of this species. We highlight that both intrinsic and environmental drivers of animal movement should be integrated to better guide management strategies.

Zoonotic parasites infecting free-living armadillos from Brazil.

Armadillos are specialist diggers and their burrows are used to find food, seek shelter and protect their pups. These burrows can also be shared with dozens of vertebrate and invertebrate species and; consequently, their parasites including the zoonotics. The aim of this study was to diagnose the presence of zoonotic parasites in four wild-caught armadillo species from two different Brazilian ecosystems, the Cerrado (Brazilian savanna) and the Pantanal (wetland). The investigated parasites and their correspondent diseases were: Toxoplasma gondii (toxoplasmosis), Trypanosoma cruzi (Chagas disease), Leishmania spp., (leishmaniasis), Paracoccidioides brasiliensis (Paracoccidioidomicosis) and Mycobacterium leprae (Hansen's disease). Forty-three free-living armadillos from Pantanal and seven road-killed armadillos from the Cerrado were sampled. Trypanosoma cruzi DTU TcIII were isolated from 2 out of 43 (4.65%) armadillos, including one of them also infected with Trypanosoma rangeli. Antibodies anti-T. gondii were detected in 13 out of 43 (30.2%) armadillos. All seven armadillos from Cerrado tested positive for P. brasiliensis DNA, in the lungs, spleen, liver fragments. Also, by molecular analysis, all 43 individuals were negative for M. leprae and Leishmania spp. Armadillos were infected by T. cruzi, T. rangeli, P. brasiliensis and presented seric antibodies to T. gondii, highlighting the importance of those armadillos could have in the epidemiology of zoonotic parasites.

ANESTHESIA AND SURGERY PROTOCOLS FOR INTRA-ABDOMINAL TRANSMITTER PLACEMENT IN FOUR SPECIES OF WILD ARMADILLO.

The anatomy and physiology of armadillos make anesthetic procedures and the placement of telemetry devices challenging. From June 2011 to November 2019, a total of 73 free-living armadillos were captured and anesthetized in the Pantanal, Brazil. Giant (Priodontes maximus), six-banded (Euphractus sexcinctus), southern naked-tailed (Cabassous unicinctus), and nine-banded (Dasypus novemcinctus) armadillos were divided into two groups. In group 1, 30 armadillos were anesthetized for collection of biological samples, body measurements, and placement of a microchip tag. Anesthetic combination BDM was applied: butorphanol tartrate, detomidine hydrochloride, and midazolam hydrochloride, each at 0.1 mg/kg. In group 2, 43 armadillos received ketamine hydrochloride at 10 mg/kg 20 min after BDM injection, and intra-abdominal radio transmitters were surgically implanted. The transmitter was inserted freely into the abdominal cavity. Vital signs were monitored during anesthesia every 10 min and varied within species and between groups. Rectal temperature varied from 33.1 ± 1.36 to 35.34 ± 1.21°C, heart rate (beats/min) from 19 ± 2.14 to 84.71 ± 9.25, respiratory rate (breaths/min) from 11 ± 4.16 to 31 ± 2.82, and oxygen saturation values (SPO2%) from 84.17% ± 2.39 to 98% ± 1.20. Both groups received the antagonist combination NYF: naloxone hydrochloride (0.02 mg/kg), yohimbine hydrochloride (0.125 mg/kg), and flumazenil (0.01 mg/kg). Recovery varied according to intravenous or intramuscular injection from 2 ± 4 to 8.08 ± 2.93 min respectively. BDM protocol was considered satisfactory and provided enough time to complete the procedures (60 ± 85 to 133.20 ± 9.12 min) according to the species and group. Ketamine added to the BDM provided enough time and a surgical plane of anesthesia (97 ± 22 to 137 ± 39.5 min). The surgical procedure technique chosen did not appear to have a negative impact on armadillos studied. Implantable transmitters provide a cost-effective method for long-term monitoring of wild individuals.

Chemical Immobilization of Free-ranging Yellow Armadillos (Euphractus sexcinctus) for Implantation of Intra-abdominal Transmitters.

Free-ranging yellow armadillos (Euphractus sexcinctus) from the Brazilian Pantanal were captured for surgical implantation of intra-abdominal radio transmitters. During March 2014, 11 animals were chemically immobilized with a combination of intramuscular ketamine hydrochloride, xylazine hydrochloride, midazolam maleate, and atropine sulfate. The mean induction time and initial heart rate in males was higher than in females. The sex of armadillos did not affect the respiratory rate, which increased from the beginning to end of the monitoring time. The rectal temperatures of females remained almost unchanged, whereas the rectal temperatures of males suffered a slight drop through the procedure. The mean (±SD) total surgical time was 50±6.5 min, and the total anesthetic recovery time was 2.5±0.5 h. The armadillos were monitored for 24 h after surgery and released at their capture site. The anesthetic association was effective, promoting muscle relaxation and analgesia that allowed the performance of surgical procedures.

Yes, they can: three-banded armadillos Tolypeutes sp. (Cingulata: Dasypodidae) dig their own burrows

It is believed that the two species of Tolypeutes Illiger, 1811are the only armadillos that do not dig their own burrows, and that these species simply re-use burrows dug by other species. Here, we show that Tolypeutes matacus (Desmarest, 1804) and Tolypeutes tricinctus (Linnaeus, 1758) dig their own burrows. We describe the burrows and three other types of shelters used by them, and provide measurements and frequency of use of the different types of shelter. We have studied free-ranging individuals of T. matacus in two locations in Central Brazil and individuals of T. tricinctus in semi-captivity in the Northeast of Brazil. Individuals of T. matacus were found primarily in small burrows (76%), straw nests (13%), shallow depressions covered with leaf-litter (7%) or in straw nests made on shallow depressions (4%). Adult males and females of T. matacus did not differ in frequency of use of different types of shelter. Sub-adults T. matacus used shallow depressions and nests more often (40%) than adults (22%) and nurslings (10%). Nurslings of T. matacus reused the shelters more frequently (66%), than sub-adults (46%) and adults (35%). Adult females reused burrows and other types of shelter more frequently than adult males. Tolypeutes tricinctus rested mainly in burrows and under leaf-litter, but did not dig depressions or build nests. Tolypeutes tricinctus occasionally used burrows dug by Euphractus sexcinctus (Linnaeus, 1758), but T. matacus never used burrows dug by other species. Nursling T. matacus always shared shelter with an adult female therefore, both used shelters with similar frequency. Adult females and nurslings of T. matacus reused shelters in higher frequency. That can be explained by the fact that adult females with offspring tend to remain for consecutive nights in the same burrow when cubs are recently born. Due to their smaller body size, sub-adult T. matacus used shelter strategies that require less energetic effort more frequently than...

Yes, they can: three-banded armadillos Tolypeutes sp. (Cingulata: Dasypodidae) dig their own burrows

It is believed that the two species of Tolypeutes Illiger, 1811are the only armadillos that do not dig their own burrows, and that these species simply re-use burrows dug by other species. Here, we show that Tolypeutes matacus (Desmarest, 1804) and Tolypeutes tricinctus (Linnaeus, 1758) dig their own burrows. We describe the burrows and three other types of shelters used by them, and provide measurements and frequency of use of the different types of shelter. We have studied free-ranging individuals of T. matacus in two locations in Central Brazil and individuals of T. tricinctus in semi-captivity in the Northeast of Brazil. Individuals of T. matacus were found primarily in small burrows (76%), straw nests (13%), shallow depressions covered with leaf-litter (7%) or in straw nests made on shallow depressions (4%). Adult males and females of T. matacus did not differ in frequency of use of different types of shelter. Sub-adults T. matacus used shallow depressions and nests more often (40%) than adults (22%) and nurslings (10%). Nurslings of T. matacus reused the shelters more frequently (66%), than sub-adults (46%) and adults (35%). Adult females reused burrows and other types of shelter more frequently than adult males. Tolypeutes tricinctus rested mainly in burrows and under leaf-litter, but did not dig depressions or build nests. Tolypeutes tricinctus occasionally used burrows dug by Euphractus sexcinctus (Linnaeus, 1758), but T. matacus never used burrows dug by other species. Nursling T. matacus always shared shelter with an adult female therefore, both used shelters with similar frequency. Adult females and nurslings of T. matacus reused shelters in higher frequency. That can be explained by the fact that adult females with offspring tend to remain for consecutive nights in the same burrow when cubs are recently born. Due to their smaller body size, sub-adult T. matacus used shelter strategies that require less energetic effort more frequently than...(AU)

Potential distribution and new records of Trinomys species (Rodentia: Echimyidae) in the state of Rio de Janeiro

The spiny rats of the genus Trinomys Thomas, 1921 have a broad distribution in the Atlantic Forests of southeastern Brazil. However, some species are known only from their type locality and adjacent areas. In our study, nine areas in the state of Rio de Janeiro were surveyed and three species of the genus were captured - Trinomys dimidiatus (Günther, 1877), T. setosus (Desmarest, 1817) and T. gratiosus bonafidei (MOOJEN, 1948). We extended the distribution of T. gratiosus bonafidei in 100 km, in a straight line to the northwest, and into an area of Semidecidual Seasonal Forest. We captured T. setosus, which had not been previously recorded in the state, in the municipality of Cambuci, extending its distribution 150 km, in a straight line to the east of its closest record, in Juiz de Fora, state of Minas Gerais. The state of Rio de Janeiro has now six recognized species of Trinomys, however none of them were collected above 1300 m of altitude. We used occurrence points provided by our inventories data and from the literature to model the potential distribution of Trinomys species. We used climatic, topographic and phytogeographic variables to prepare the potential distribution maps. The algorithm used for modeling was provided by the software Maxent, version 3.2.1. Although species boundaries within Trinomys in Rio de Janeiro State are not yet clear, their distributions seem to be parapatric, except for T. iheringi and T. dimidiatus.

Potential distribution and new records of Trinomys species (Rodentia: Echimyidae) in the state of Rio de Janeiro

The spiny rats of the genus Trinomys Thomas, 1921 have a broad distribution in the Atlantic Forests of southeastern Brazil. However, some species are known only from their type locality and adjacent areas. In our study, nine areas in the state of Rio de Janeiro were surveyed and three species of the genus were captured - Trinomys dimidiatus (Günther, 1877), T. setosus (Desmarest, 1817) and T. gratiosus bonafidei (MOOJEN, 1948). We extended the distribution of T. gratiosus bonafidei in 100 km, in a straight line to the northwest, and into an area of Semidecidual Seasonal Forest. We captured T. setosus, which had not been previously recorded in the state, in the municipality of Cambuci, extending its distribution 150 km, in a straight line to the east of its closest record, in Juiz de Fora, state of Minas Gerais. The state of Rio de Janeiro has now six recognized species of Trinomys, however none of them were collected above 1300 m of altitude. We used occurrence points provided by our inventories data and from the literature to model the potential distribution of Trinomys species. We used climatic, topographic and phytogeographic variables to prepare the potential distribution maps. The algorithm used for modeling was provided by the software Maxent, version 3.2.1. Although species boundaries within Trinomys in Rio de Janeiro State are not yet clear, their distributions seem to be parapatric, except for T. iheringi and T. dimidiatus.

Potential distribution and new records of Trinomys species (Rodentia: Echimyidae) in the state of Rio de Janeiro

The spiny rats of the genus Trinomys Thomas, 1921 have a broad distribution in the Atlantic Forests of southeastern Brazil. However, some species are known only from their type locality and adjacent areas. In our study, nine areas in the state of Rio de Janeiro were surveyed and three species of the genus were captured - Trinomys dimidiatus (Günther, 1877), T. setosus (Desmarest, 1817) and T. gratiosus bonafidei (MOOJEN, 1948). We extended the distribution of T. gratiosus bonafidei in 100 km, in a straight line to the northwest, and into an area of Semidecidual Seasonal Forest. We captured T. setosus, which had not been previously recorded in the state, in the municipality of Cambuci, extending its distribution 150 km, in a straight line to the east of its closest record, in Juiz de Fora, state of Minas Gerais. The state of Rio de Janeiro has now six recognized species of Trinomys, however none of them were collected above 1300 m of altitude. We used occurrence points provided by our inventories data and from the literature to model the potential distribution of Trinomys species. We used climatic, topographic and phytogeographic variables to prepare the potential distribution maps. The algorithm used for modeling was provided by the software Maxent, version 3.2.1. Although species boundaries within Trinomys in Rio de Janeiro State are not yet clear, their distributions seem to be parapatric, except for T. iheringi and T. dimidiatus.

Mamíferos do Parque Estadual do Desengano, Rio de Janeiro, Brasil / Mammals of Desengano State Park, Rio de Janeiro, Brazil

Mesmo após a devastação de grande parte das suas matas, o Estado do Rio de Janeiro ainda abriga uma grande riqueza de mamíferos terrestres. Contudo, informações sobre abundância e distribuição da mastofauna do Estado ainda são escassas. Este estudo tem como objetivo inventariar os mamíferos do Parque Estadual do Desengano, localizado na região norte do Estado do Rio de Janeiro, uma das regiões menos amostradas e mais alteradas do Estado. O inventário foi realizado utilizando armadilhas do tipo Sherman e Tomahawk, e armadilhas de queda para os pequenos mamíferos não-voadores, redes de neblina para os morcegos, armadilhas fotográficas, avistamentos e relatos de moradores e funcionários do Parque para os mamíferos de maior porte. Nós registramos 56 espécies de mamíferos, das quais 15 constam na lista da fauna ameaçada de extinção do Estado do Rio de Janeiro e 10 na lista da fauna brasileira ameaçada de extinção, incluindo Brachyteles arachnoides. As espécies mais abundantes foram o morcego Sturnira lilium e o roedor Akodon serrensis. Além disso, Thaptomys nigrita, roedor normalmente pouco capturado no Estado, foi relativamente abundante no Parque Estadual do Desengano. Nossos resultados indicam que o Parque abriga 33,7 por cento das espécies de mamíferos com ocorrência conhecida para o Estado, destacando a importância da área para a conservação da fauna do Rio de Janeiro.

Even after the devastation of large part of its forests, Rio de Janeiro State still harbors a rich terrestrial mammal fauna. However, information on the distribution and abundance of mammal species in the State is still scarce. This study aims to survey the mammals of the Desengano State Park, located on the northern part of Rio de Janeiro, one of the least studied and most altered regions of the State. The inventory was conducted using Sherman, Tomahawk, and pitfall traps for non-volant small mammals, mist nets for bats, camera traps, sightings and reports of residents and officials of the Park for large mammals. We recorded 56 species of mammals, of which 15 are on the list of threatened fauna of Rio de Janeiro State and 10 on the list of Brazilian threatened fauna, including Brachyteles arachnoides. The most abundant species were the bat Sturnira lilium and the rodent Akodon serrensis. Moreover, Thaptomys nigrita, a rodent not commonly captured in the State, was relatively abundant in the Desengano State Park. Results indicate that the park harbors 33.7 percent of the species of mammals known to occur in the State, highlighting the importance of the area for the conservation of Rio de Janeiro fauna.