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1.
Transplant Proc ; 51(3): 783-789, 2019 Apr.
Article in English | MEDLINE | ID: mdl-30979465

ABSTRACT

BACKGROUND: Coagulation abnormalities in liver transplant patients are complex and may be related to the underlying liver disease. We evaluated the effects of disease etiology on whole-blood rotational thromboelastometry (ROTEM; Pentapharm GmbH, Munich, Germany) profile and association with thrombotic complications following liver transplantation. METHODS: Analysis of perioperative data from patients undergoing liver transplantation between January 1, 2012 and December 31, 2016. Patients were grouped based on the biology of their underlying liver disease: hepatocellular carcinoma (HCC), biliary etiology, and non-biliary etiology. The primary outcome was the EXTEM A10 value of the pre-incision ROTEM. Secondary outcomes included associations between EXTEM A10 value and incidence of postoperative thrombotic complications. RESULTS: Three hundred fifty patients met the eligibility criteria: 60 had biliary etiologies, 203 had non-biliary etiologies, and 87 had HCC. EXTEM A10 values were significantly higher in patients with biliary etiologies than those with non-biliary etiologies (mean difference, 13.8; 95% CI: 10.1 to 17.5; P = .001) and those with HCC (mean difference, 10.4; 95% CI: 6.2 to 14.7; P = .001). Patients with non-biliary etiologies had slightly higher values than those with HCC (mean difference, -3.3; 95% CI: -6.6 to -0.1; P = .04). Higher values for biliary etiologies remained after adjusting for liver disease severity, platelet count, and fibrinogen level. There was no significant difference in EXTEM A10 values between patients who suffered thrombotic complications and those who did not (mean difference: 4.3, 95% CI: -1.3 to 9.9, P = .13). CONCLUSION: Patients with biliary diseases demonstrated higher EXTEM A10 values compared to those with non-biliary diseases or HCC. This was not fully explained by differences in disease severity, platelet count, or fibrinogen level. Pre-incision EXTEM A10 values do not predict incidence of postoperative thrombotic complications.


Subject(s)
Blood Coagulation Disorders/etiology , Liver Transplantation/adverse effects , Postoperative Complications/epidemiology , Postoperative Complications/etiology , Adult , Bile Duct Diseases/complications , Female , Germany , Humans , Incidence , Liver Diseases/complications , Male , Middle Aged , Thrombelastography
2.
EJVES Short Rep ; 30: 13-15, 2016.
Article in English | MEDLINE | ID: mdl-28856295

ABSTRACT

BACKGROUND: The principle of interval ultrasound surveillance of small abdominal aortic aneurysms (AAA) is well established. The fundamental principle of surveillance is that repair of AAA is a serious undertaking and the risk of the operation outweighs the risk of rupture in aneurysms less than 5.5 cm. Surveillance is well established but requires multiple visits to both the surgical clinic and the ultrasound department. REPORT: This report presents a system whereby the vascular surgeon is trained in the process of aortic sonography with a view to one-stop clinic assessment. After training of the main investigators in aortic sonography, the surgeons performed scans on the aortas of 80 consecutive patients and compared the scan result with the subsequent formal scan. DISCUSSION: Surgical and radiographer scans correlate very closely. It is believed that the one-stop aortic surveillance model is safe, accurate, and improves both the patient journey and clinic throughput.

3.
Br J Surg ; 102(13): 1619-28, 2015 Dec.
Article in English | MEDLINE | ID: mdl-26447461

ABSTRACT

BACKGROUND: Analgesia after liver surgery remains controversial. A previous randomized trial of continuous wound infiltration (CWI) versus thoracic epidural analgesia (TEA) after liver surgery (LIVER trial) showed a faster recovery time in the wound infiltration group but better early postoperative pain scores in the TEA group. High-level evidence is, however, limited and opinion remains divided. The aim was to determine whether there is a difference in functional recovery time between patients having CWI plus abdominal nerve blocks versus TEA after liver resection. METHODS: A randomized unblinded clinical trial of patients undergoing open liver resection was commenced in December 2012, with follow-up to August 2014. Patients were randomized to receive either wound catheter and nerve block (CWI group) or TEA for 48 h after surgery. The primary outcome measure was functional recovery time. Secondary outcomes were pain scores, complication rates, inflammatory response and central venous pressure (CVP) during transection. RESULTS: Of 50 patients randomized initially to each group, 44 received TEA and 49 CWI. Median (i.q.r.) recovery time was 6·5 (5-9·75) and 5·75 (4-7) days in the TEA and CWI groups respectively (P = 0·036). Pain scores were not significantly different between the two groups, and there were no differences in morbidity, inflammatory response or CVP during transection. CONCLUSION: Wound infiltration is associated with a reduced time to recovery after open liver resection compared with epidural analgesia. TEA does not offer an advantage over CWI in terms of attenuation of the inflammatory response or pain scores. REGISTRATION NUMBER: NCT01747122 ( http://www.clinicaltrials.gov).


Subject(s)
Analgesia, Epidural/methods , Anesthesia, Local/methods , Catheters , Hepatectomy/methods , Nerve Block/methods , Pain, Postoperative/prevention & control , Perioperative Care/methods , Female , Follow-Up Studies , Humans , Male , Middle Aged , Pain Measurement , Pain, Postoperative/diagnosis , Retrospective Studies , Treatment Outcome
4.
Anaesthesia ; 69(5): 429-35, 2014 May.
Article in English | MEDLINE | ID: mdl-24738800

ABSTRACT

We studied the use of a new ke0 value (0.6 min(-1)) for the Marsh pharmacokinetic model for propofol. Speed of induction and side-effects produced were compared with three other target-controlled infusion systems. Eighty patients of ASA physical status 1-2 were studied in four groups in a prospective, randomised study. Median (IQR [range]) induction times were shorter with the Marsh model in effect-site control mode with a ke0 of either 0.6 min(-1) (81 (61-101 [49-302])s, p < 0.01), or 1.2 min(-1) (78 (68-208 [51-325])s, p < 0.05), than with the Marsh model in blood concentration control (132 (90-246 [57-435])). The Schnider model in effect-site control produced induction times that were longer (298 (282-398 [58-513])s) than those observed with the Marsh model in blood control (p < 0.05), or either effect-site control mode (p < 0.001). There were no differences in the magnitude of blood pressure changes or frequency of apnoea between groups.


Subject(s)
Anesthesia, General/methods , Anesthetics, Intravenous/pharmacokinetics , Models, Biological , Propofol/pharmacokinetics , Adolescent , Adult , Anesthetics, Intravenous/blood , Double-Blind Method , Female , Humans , Infusions, Intravenous , Male , Middle Aged , Monitoring, Intraoperative/methods , Propofol/blood , Prospective Studies , Young Adult
6.
Br J Cancer ; 108(12): 2495-504, 2013 Jun 25.
Article in English | MEDLINE | ID: mdl-23736031

ABSTRACT

BACKGROUND: A 28 amino-acid (aa) cell-penetrating peptide (p28) derived from azurin, a redox protein secreted from the opportunistic pathogen Pseudomonas aeruginosa, produces a post-translational increase in p53 in cancer cells by inhibiting its ubiquitination. METHODS: In silico computational simulations were used to predict motifs within the p53 DNA-binding domain (DBD) as potential sites for p28 binding. In vitro direct and competitive pull-down studies as well as western blot and RT-PCR analyses were used to validate predictions. RESULTS: The L1 loop (aa 112-124), a region within the S7-S8 loop (aa 214-236) and T140, P142, Q144, W146, R282 and L289 of the p53DBD were identified as potential sites for p28 binding. p28 decreased the level of the E3 ligase COP1 >80%, in p53wt and p53mut cells with no decrease in COP1 in p53dom/neg or p53null cells. Brief increases in the expression of the E3 ligases, TOPORS, Pirh2 and HDM2 (human double minute 2) in p53wt and p53mut cells were in response to sustained increases in p53. CONCLUSION: These data identify the specific motifs within the DBD of p53 that bind p28 and suggest that p28 inhibition of COP1 binding results in the sustained, post-translational increase in p53 levels and subsequent inhibition of cancer cell growth independent of an HDM2 pathway.


Subject(s)
Azurin/pharmacology , Peptide Fragments/pharmacology , Tumor Suppressor Protein p53/metabolism , Ubiquitin-Protein Ligases/metabolism , Amino Acid Sequence , Animals , Azurin/chemistry , Azurin/metabolism , Cell Line, Tumor , Down-Regulation/drug effects , Enzyme Inhibitors/metabolism , Enzyme Inhibitors/pharmacology , Female , Humans , Male , Mice , Mice, Nude , Models, Molecular , Molecular Dynamics Simulation , Molecular Sequence Data , Peptide Fragments/chemistry , Peptide Fragments/metabolism , Protein Binding/drug effects , Protein Interaction Domains and Motifs/drug effects , Protein Interaction Domains and Motifs/physiology , Tumor Suppressor Protein p53/antagonists & inhibitors , Tumor Suppressor Protein p53/chemistry , Ubiquitin-Protein Ligases/antagonists & inhibitors , Xenograft Model Antitumor Assays
7.
Scott Med J ; 58(1): 2-6, 2013 Feb.
Article in English | MEDLINE | ID: mdl-23596019

ABSTRACT

BACKGROUND AND AIMS: Advance warning of patients who are difficult to intubate may prevent an airway catastrophe but relies on effective communication between specialties. Anaesthetists aim to inform general practitioners whenever a difficult airway is encountered and expect general practitioners to include this information in subsequent referrals. We investigated how anaesthetists communicated with general practitioners, their knowledge of the Read Code (used by general practitioner computer systems) for difficult tracheal intubation, and how likely general practitioners were to pass the information on. METHODS AND RESULTS: We surveyed 631 consultant anaesthetists and 217 general practitioners. We found only 125 (20%) anaesthetists consistently wrote difficult airway letters to general practitioners. Only 20 (3%) knew the Read Code for difficult intubation (SP2y3), although 454 (72%) thought it to be useful. Most general practitioners (212, 98%) thought airway information to be important, but only half receiving a difficult airway communication forwarded it on. General practitioners recommended including the Read Code SP2y3 and labelling it 'high priority', ensuring that 'Difficult Tracheal Intubation' would be listed in the Emergency Care Summary generated for hospital referrals. CONCLUSION: Communication between anaesthetists and general practitioners is currently poor, but could be improved by simplifying difficult airway letters and including the SP2y3 code and a statement of priority.


Subject(s)
Airway Management , Anesthesiology , General Practice , Interdisciplinary Communication , Humans , Surveys and Questionnaires , United Kingdom
8.
Br J Cancer ; 108(5): 1061-70, 2013 Mar 19.
Article in English | MEDLINE | ID: mdl-23449360

ABSTRACT

BACKGROUND: This first-in-human, phase I clinical trial of p28 (NSC745104), a 28-amino-acid fragment of the cupredoxin azurin, investigated the safety, tolerability, pharmacokinetics and preliminary activity of p28 in patients with p53(+) metastatic solid tumours. METHODS: A total of 15 patients were administered p28 i.v. as a short infusion three times per week for 4 weeks followed by a 2-week rest under an accelerated titration 3+3 dose escalation design until either a grade 3-related adverse event occurred or the maximum tolerated dose (MTD) was reached. Single-dose and steady-state serum pharmacokinetics were characterised. Assessments included toxicity, best objective response by RECIST 1.1 Criteria, and overall survival. RESULTS: No patients exhibited any dose-limiting toxicities (DLTs), significant adverse events or exhibited an immune response (IgG) to the peptide. The No Observed Adverse Effect Level (NOAEL) and MTD were not reached. Seven patients demonstrated stable disease for 7-61 weeks, three a partial response for 44-125 weeks, and one a complete response for 139 weeks. Three patients are still alive at 158, 140, and 110 weeks post therapy completion. CONCLUSION: p28 was tolerated with no significant adverse events. An MTD was not reached. Evidence of anti-tumour activity indicates a highly favourable therapeutic index and demonstrates proof of concept for this new class of non-HDM2-mediated peptide inhibitors of p53 ubiquitination.


Subject(s)
Antineoplastic Agents/therapeutic use , Azurin/adverse effects , Azurin/therapeutic use , Peptide Fragments/adverse effects , Peptide Fragments/therapeutic use , Aged , Aged, 80 and over , Antineoplastic Agents/adverse effects , Antineoplastic Agents/pharmacokinetics , Azurin/pharmacokinetics , Drug Administration Schedule , Female , Humans , Male , Maximum Tolerated Dose , Middle Aged , Neoplasm Metastasis , No-Observed-Adverse-Effect Level , Peptide Fragments/pharmacokinetics , Tumor Suppressor Protein p53/metabolism , Ubiquitination
9.
Anim Genet ; 42(4): 440-4, 2011 Aug.
Article in English | MEDLINE | ID: mdl-21749428

ABSTRACT

We used the IMNpRH2(12,000-rad) RH and IMpRH(7,000-rad) panels to integrate 2019 transcriptome (RNA-seq)-generated contigs with markers from the porcine genetic and radiation hybrid (RH) maps and bacterial artificial chromosome finger-printed contigs, into 1) parallel framework maps (LOD ≥ 10) on both panels for swine chromosome (SSC) 4, and 2) a high-resolution comparative map of SSC4, thus and human chromosomes (HSA) 1 and 8. A total of 573 loci were anchored and ordered on SSC4 closing gaps identified in the porcine sequence assembly Sscrofa9. Alignment of the SSC4 RH with the genetic map identified five microsatellites incorrectly mapped around the centromeric region in the genetic map. Further alignment of the RH and comparative maps with the genome sequence identified four additional regions of discrepancy that are also suggestive of errors in assembly, three of which were resolved through conserved synteny with blocks on HSA1 and HSA8.


Subject(s)
Chromosome Mapping/methods , Chromosomes, Mammalian/genetics , Gene Expression Profiling/methods , Swine/genetics , Animals , Chromosomes, Artificial, Bacterial , Focal Adhesion Kinase 1/genetics , Humans , Likelihood Functions , Microsatellite Repeats/genetics , Radiation Hybrid Mapping , Species Specificity , Synteny/genetics
10.
Anaesthesia ; 65(12): 1194-9, 2010 Dec.
Article in English | MEDLINE | ID: mdl-21182600

ABSTRACT

The LiDCO plus monitor (LiDCO Ltd, Cambridge, UK) uses pulse contour analysis of the arterial pressure waveform to indicate changes in stroke volume and cardiac output. Calibration against a lithium indicator dilution method is required to permit display of absolute values in addition to trends. The effect of haemodynamic changes during anaesthesia and surgery on this calibration factor has not previously been studied. Therefore, we investigated whether it remained constant during elective abdominal aortic aneurysm surgery in 15 patients. Comparison between the calibration factor values at different time points was made by repeated recalibration throughout the peri-operative period. Calibration factor increased by a mean of 53% after anaesthesia (epidural plus general) (p = 0.03) and decreased by a mean of 40% after aortic clamping (p = 0.0001). Recalibration should be undertaken after induction of anaesthesia and after aortic clamping if absolute values of cardiac output and stroke volume are required.


Subject(s)
Anesthetics, Intravenous/pharmacology , Anesthetics, Local/pharmacology , Aortic Aneurysm, Abdominal/surgery , Cardiac Output/physiology , Monitoring, Intraoperative/methods , Adult , Aged , Aged, 80 and over , Anesthesia, Epidural/methods , Anesthesia, General/methods , Aortic Aneurysm, Abdominal/physiopathology , Blood Pressure/physiology , Calibration , Cardiac Output/drug effects , Constriction , Female , Humans , Intraoperative Care/methods , Male , Middle Aged , Monitoring, Intraoperative/instrumentation
11.
J Plast Reconstr Aesthet Surg ; 63(3): e253-4, 2010 Mar.
Article in English | MEDLINE | ID: mdl-19632911

ABSTRACT

Hydrogen peroxide is commonly used for the decontamination of wounds. We report a case of a probable venous oxygen embolism resulting in cardiovascular collapse following irrigation of a necrotic breast wound with hydrogen peroxide. We discuss the differential diagnosis, mechanism of oxygen embolism and question the relative advantages versus disadvantages of using hydrogen peroxide for wound decontamination.


Subject(s)
Anti-Infective Agents, Local/adverse effects , Embolism, Air/etiology , Heart Arrest/etiology , Hydrogen Peroxide/adverse effects , Surgical Wound Infection/drug therapy , Therapeutic Irrigation/adverse effects , Administration, Topical , Anti-Infective Agents, Local/administration & dosage , Breast , Female , Humans , Hydrogen Peroxide/administration & dosage , Mammaplasty/adverse effects , Middle Aged , Surgical Wound Infection/etiology
12.
J Anim Breed Genet ; 126(3): 242-9, 2009 Jun.
Article in English | MEDLINE | ID: mdl-19646153

ABSTRACT

This paper reports the quantitative analysis of the historical database of a herd of Sinclair swine affected by cutaneous malignant melanoma. The herd was under partial and non-systematic selection for melanoma susceptibility (animals having at least one tumour during the first 6 weeks of life). Weighted selection differentials for the number of tumours at birth and the number of tumours at 6 weeks were generally positive and between -0.43 and 4.76 tumours for the number of tumours at 6 weeks. Estimates of the heritability for number of tumours at birth and at 6 weeks using 1934 animals were 0.27 (+/-0.03) and 0.25 (+/-0.03), respectively. The estimate of the genetic correlation between these two traits was 0.95 (+/-0.03). Genetic trends were positive for the number of tumours at birth and at 6 weeks. In spite of positive selection differentials and a moderate heritability, there was a negative phenotypic trend in the number of tumours. Natural selection might be acting in a direction opposite to artificial selection in the Sinclair herd. The slopes of the regression of the number of tumours at birth, at 6 weeks, and melanoma susceptibility on individual inbreeding coefficients were non-significant, indicating no evidence of dominance. The number of live-born pigs was lower in litters from parents susceptible to the disease (p < 0.01).


Subject(s)
Inbreeding , Melanoma/genetics , Selection, Genetic , Skin Neoplasms/genetics , Sus scrofa/genetics , Animals , Databases, Factual , Female , Genetic Predisposition to Disease , Humans , Male , Parturition , Phenotype
13.
Br J Dermatol ; 161(3): 630-4, 2009 Sep.
Article in English | MEDLINE | ID: mdl-19519827

ABSTRACT

BACKGROUND: The reported incidence of melanoma has greatly increased and this has been attributed to ultraviolet exposure. OBJECTIVES: We considered the possibility that the increase was an artefact caused by diagnostic drift. METHODS: We tested this by analysing the histological diagnosis, mortality and incidence of all lesions reported as melanomas in East Anglia between 1991 and 2004. RESULTS: There were 3971 melanomas in all, and their annual incidence increased from 9.39 to 13.91 cases per 100,000 per year during the period studied. This increased incidence was almost entirely due to minimal, stage 1 disease. There was no change in the combined incidence of the other stages of the disease, and the overall mortality only increased from 2.16 to 2.54 cases per 100,000 per year. CONCLUSIONS: We therefore conclude that the large increase in reported incidence is likely to be due to diagnostic drift which classifies benign lesions as stage 1 melanoma. This conclusion could be confirmed by direct histological comparison of contemporary and past histological samples. The distribution of the lesions reported did not correspond to the sites of lesions caused by solar exposure. These findings should lead to a reconsideration of the treatment of 'early' lesions, a search for better diagnostic methods to distinguish them from truly malignant melanomas, re-evaluation of the role of ultraviolet radiation and recommendations for protection from it, as well as the need for a new direction in the search for the cause of melanoma.


Subject(s)
Disease Outbreaks , Melanoma/epidemiology , Skin Neoplasms/epidemiology , England/epidemiology , Humans , Incidence , Melanoma/mortality , Melanoma/pathology , Neoplasm Staging , Skin Neoplasms/mortality , Skin Neoplasms/pathology
14.
Cytogenet Genome Res ; 120(1-2): 157-63, 2008.
Article in English | MEDLINE | ID: mdl-18467842

ABSTRACT

We are constructing high-resolution, chromosomal 'test' maps for the entire pig genome using a 12,000-rad WG-RH panel (IMNpRH2(12,000-rad))to provide a scaffold for the rapid assembly of the porcine genome sequence. Here we present an initial, comparative map of human chromosome (HSA) 11 with pig chromosomes (SSC) 2p and 9p. Two sets of RH mapping vectors were used to construct the RH framework (FW) maps for SSC2p and SSC9p. One set of 590 markers, including 131 microsatellites (MSs), 364 genes/ESTs, and 95 BAC end sequences (BESs) was typed on the IMNpRH2(12,000-rad) panel. A second set of 271 markers (28 MSs, 138 genes/ESTs, and 105 BESs) was typed on the IMpRH(7,000-rad) panel. The two data sets were merged into a single data-set of 655 markers of which 206 markers were typed on both panels. Two large linkage groups of 72 and 194 markers were assigned to SSC2p, and two linkage groups of 84 and 168 markers to SSC9p at a two-point LOD score of 10. A total of 126 and 114 FW markers were ordered with a likelihood ratio of 1000:1 to the SSC2p and SSC9p RH(12,000-rad) FW maps, respectively, with an accumulated map distance of 4046.5 cR(12,000 )and 1355.2 cR(7,000 )for SSC2p, and 4244.1 cR(12,000) and 1802.5 cR(7,000) for SSC9p. The kb/cR ratio in the IMNpRH2(12,000-rad) FW maps was 15.8 for SSC2p, and 15.4 for SSC9p, while the ratio in the IMpRH(7,000-rad) FW maps was 47.1 and 36.3, respectively, or an approximately 3.0-fold increase in map resolution in the IMNpRH(12,000-rad) panel over the IMpRH(7,000-rad) panel. The integrated IMNpRH(12,000-rad) andIMpRH(7,000-rad) maps as well as the genetic and BAC FPC maps provide an inclusive comparative map between SSC2p, SSC9p and HSA11 to close potential gaps between contigs prior to sequencing, and to identify regions where potential problems may arise in sequence assembly.


Subject(s)
Chromosomes, Human, Pair 11/genetics , Radiation Hybrid Mapping/veterinary , Swine/genetics , Animals , Chromosome Mapping , Chromosomes, Artificial, Bacterial/genetics , Expressed Sequence Tags , Humans , Lod Score , Microsatellite Repeats , Radiation Hybrid Mapping/methods , Species Specificity
15.
J Anim Sci ; 86(1): 17-24, 2008 Jan.
Article in English | MEDLINE | ID: mdl-17878273

ABSTRACT

The feasibility and economic value of DNA paternity identification were investigated and illustrated using Nevada beef cattle operations. A panel of 15 microsatellites was genotyped in 2,196 animals from 8 ranches with a total of 31,571 genotypes. Probabilities of exclusion for each marker within ranch and across ranches were computed. Joint probabilities of exclusion for the 15 microsatellites were also determined, resulting in values over 0.99 for any individual ranch and across ranches. Dropping 1 or 2 microsatellites with the lowest probabilities of exclusion resulted in joint probabilities greater than 0.99 and with marginal reduction compared with the probabilities with 15 microsatellites. Formulas for benefit-cost analysis for a DNA paternity identification program in beef cattle were derived. Genotyping 15 microsatellites with 20 calves per sire resulted in benefits of $1.71 and $2.44 per dollar invested at bull culling rates of 0.20 and 0.30, respectively. The breakpoints for the program to be profitable occurred when the ratio of the price of 1 kg of calf liveweight over the cost of genotyping 1 microsatellite was greater than 1.1 for a bull culling rate of 0.30. Benefit-cost analysis was also derived under incomplete DNA paternity identification using a lower number of DNA markers than necessary to achieve joint probabilities of exclusion of 0.99. Approximately a 20% increase in the benefit-cost ratio was achieved using 10 vs. 12 microsatellites with incomplete paternity identification. The greater the number of bulls in the operation, the lower the benefit-cost ratio of the paternity testing program. Low probabilities of exclusion and a high number of bulls in the beef operation reduced the benefit-cost ratio dramatically. The DNA paternity identification programs are feasible and may be profitable for free-range beef cattle operations.


Subject(s)
Animal Husbandry/economics , Paternity , Alleles , Animals , Breeding/economics , Cattle , DNA/genetics , Heterozygote , Male , Microsatellite Repeats/genetics , Nevada
16.
Genetics ; 176(1): 585-97, 2007 May.
Article in English | MEDLINE | ID: mdl-17513891

ABSTRACT

Cutaneous malignant melanoma in Sinclair swine is a hereditary disease that develops in utero or during the first 6 weeks of life. In many cases, the tumors regress and piglets survive the disease. Two different sets of gene(s) might be involved in the disease: tumor initiator (suppressor) locus or loci and loci affecting the aggressiveness of the disease (number and stage of tumors). We develop maximum-likelihood methods for interval mapping for both types of loci. The experimental design consisted of a boar mated to tumor-bearing sows with recording of tumor status and number of tumors in the 6 weeks of life of the offspring. The model to search for the tumor initiator locus (with alleles T and t) was tested by computer simulation. Estimates of penetrances (Psi(TT) and Psi(Tt) for genotypes TT and Tt, respectively) were accurate even for small family sizes. Statistical power was >99% for a family size of 70 with Psi(TT) = 1 and Psi(Tt) = 0. The models to test for number of tumors incorporated genotype information for the tumor initiator locus. All models were tested with data from a single boar family of 72 piglets over swine chromosomes 6 and 8 (SSC6 and SSC8). No tumor evidence for initiator loci was found associated with these chromosomes. However, association of a QTL affecting number of tumors at birth near microsatellite SW1953 on SSC8 was chromosomewise significant (P<0.0124).


Subject(s)
Inheritance Patterns/genetics , Melanoma/genetics , Models, Genetic , Skin Neoplasms/genetics , Alleles , Animals , Chromosome Mapping , Genetic Markers , Heterozygote , Homozygote , Lod Score , Penetrance , Recombination, Genetic/genetics , Swine
17.
Cytogenet Genome Res ; 116(1-2): 65-71, 2007.
Article in English | MEDLINE | ID: mdl-17268180

ABSTRACT

The Deleted in AZoospermia Like (DAZL) gene is a member of the DAZ family and encodes an RNA-binding protein that is expressed in prenatal and postnatal germ cells of males and females. In the human, there are five highly-related members in the DAZ family, four (DAZ1-4) on the Y chromosome and one (DAZL) on an autosome (HSA3). Mutations in these genes have been linked to severe spermatogenic failure and infertility in men. In the present study, we have cloned and characterized the bovine DAZL (bDAZL) gene. The full-length bDAZL cDNA is predicted to encode a protein of 295 amino acids with an RNA recognition motif. The deduced protein sequence of bDAZL is 96 and 97% similar to human and mouse DAZL, respectively. Fluorescence in situ hybridization (FISH) maps bDAZL to the distal region on BTA1q. The bDAZL gene consists of 11 exons and 10 introns. A bDAZL pseudogene was identified on BTA16. Expression analysis of bDAZL in 13 different tissues by RT-PCR shows that two transcripts, variant 1 (2,996 bp) and variant 2 (1,373 bp), of the bDAZL gene are detected only in testis mRNA. The variants probably result from alternative RNA splicing as variant 1 contains an additional 1,623-bp insertion in the 3' UTR. Our results lay the groundwork for possible single nucleotide polymorphism (SNP) and functional studies of the DAZL gene in cattle.


Subject(s)
RNA-Binding Proteins/genetics , Animals , Cattle , Chromosome Mapping , Cloning, Molecular , Gene Library , In Situ Hybridization, Fluorescence , Male , Physical Chromosome Mapping , RNA-Binding Proteins/metabolism , Rats , Reverse Transcriptase Polymerase Chain Reaction , Sequence Analysis, DNA , Testis/metabolism , Tissue Distribution
18.
Environ Int ; 32(8): 934-47, 2006 Dec.
Article in English | MEDLINE | ID: mdl-16854464

ABSTRACT

Air quality is managed in Great Britain via an effects-based, risk management process designed to provide a dynamic solution to public health issues associated with elevated concentrations of seven specified air pollutants. This paper is concerned with an examination and evaluation of the process of Local Air Quality Management (LAQM) in Great Britain from the late 1980s to date as a risk management process. The statutory basis of LAQM process is provided by the Environment Act 1995. The Act provides a framework in which national and local actions are required to identify and remediate areas of poor air quality. Within this framework, the implementation of the process at national and local levels is considered, leading to an identification and assessment of risks in the formulation and implementation of air quality management policy and practice. Local Authorities began the process of Review and Assessment in 1999 and the first round of the process concluded in 2001. Following this, some 129 Local Authorities declared one or more Air Quality Management Areas (AQMAs). The Review and Assessment elements of the framework were subjected to an evaluation in 2001 and the essential elements of it were confirmed as fit for purpose. The evaluation led to a confirmation of the process of LAQM but also a simplification based on the experience of Round 1. Now, a two step process is required comprising of an Updating and Screening Assessment and, where a risk of exceeding an Air Quality Objective (AQO) is identified, a Detailed Assessment follows. The Government has identified a time scale for Review and Assessment through to 2010 and also introduced the requirement of a regular Progress Report in order that a Local Authority is able to address routine matters of air quality management. The risks inherent in epidemiological or scientific uncertainty are factored into the LAQM process at an early stage of the process and, by identifying the risks and subjecting them to regular review, the process provides a 'level playing field' across spatial and temporal scales. Whilst the process of LAQM described in this paper has been developed for Great Britain, the generic elements of the process are applicable to other countries challenged by air pollution problems which require both national and local action to resolve them.


Subject(s)
Air Pollution/analysis , Environmental Exposure/analysis , Environmental Monitoring/methods , Risk Assessment/methods , Risk Management/methods , Air Pollution/history , Air Pollution/prevention & control , Animals , Environmental Exposure/history , Environmental Exposure/prevention & control , Environmental Monitoring/history , Geography , History, 20th Century , History, 21st Century , Humans , Quality Control , Risk Assessment/history , Risk Management/history , United Kingdom
19.
Anim Genet ; 36(2): 146-51, 2005 Apr.
Article in English | MEDLINE | ID: mdl-15771726

ABSTRACT

Bovine chromosome 20 (BTA20) is associated with several quantitative trait loci (QTL) for meat tenderness, birth weight, milk yield and composition. Fine mapping of these QTL requires the development of additional informative markers to increase the resolution of the BTA20 genetic and physical maps. A BTA20-specific library was constructed by means of microdissection and microcloning, and screened for dinucleotide repeats with (CA)16 and (GT)16 oligos. A total of 60 new microsatellites (MS) were developed and characterized for polymorphism using the U.S. Department of Agriculture (USDA)/Meat Animal Research Center (MARC) bovine reference family, of which 53 markers were informative in this family. The number of alleles for these loci varied from 1 to 14, with an average of 6.5. Thirty-three of these MSs, together with 105 markers previously mapped to BTA20, were scored on a 7000-rad cattle-hamster whole-genome radiation hybrid panel (SUNbRH), resulting in a high-resolution RH7000 rad map for BTA20.


Subject(s)
Cattle/genetics , Chromosomes, Mammalian/genetics , Gene Library , Microsatellite Repeats/genetics , Radiation Hybrid Mapping , Animals , Base Sequence , Cloning, Molecular/methods , DNA Primers , Microdissection , Molecular Sequence Data , Sequence Analysis, DNA
20.
J Environ Monit ; 6(10): 849-53, 2004 Oct.
Article in English | MEDLINE | ID: mdl-15480500

ABSTRACT

In 1997, the UK government instigated the practice of Local Air Quality Management (LAQM) in the UK. This process is based on local authorities undertaking Review and Assessments of air quality within their areas. The first round of Review and Assessments have now been completed and represents the most extensive and coordinated analysis of air pollution ever undertaken in the UK, and probably in Europe. This paper takes a broad look at the outcomes of this process so far and identifies some of the key areas where lessons have/can be learnt both about patterns of air pollution in the UK and about the framework for investigating these that has been implemented under the LAQM regime. The process has led to a much higher number of local authorities finding problems with air pollution than initially expected. It has also challenged many assumptions about the significance of various pollutants and their sources.


Subject(s)
Air Pollution/legislation & jurisprudence , Environmental Monitoring/legislation & jurisprudence , Local Government , Air Pollution/analysis , Environmental Monitoring/standards , Motor Vehicles , Nitrogen Dioxide/analysis , Particle Size , Quality Control , Sulfur Dioxide/analysis , United Kingdom
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