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1.
J Mol Diagn ; 2024 May 20.
Article En | MEDLINE | ID: mdl-38777037

This study describes the validation of a clinical RNA expression panel with evaluation of concordance between gene copy gain by a next generation sequencing (NGS) assay and high gene expression by an RNA expression panel. The RNA Salah Targeted Expression Panel (RNA STEP) was designed with input from oncologists to include 204 genes with utility for clinical trial prescreening and therapy selection. RNA STEP was validated with the nanoString platform using remnant FFPE-derived RNA from 102 patients previously tested with a validated clinical NGS panel. The repeatability, reproducibility, and concordance of RNA STEP results with NGS results were evaluated. RNA STEP demonstrated high repeatability and reproducibility with excellent correlation (r > 0.97, p < 0.0001) for all comparisons. Comparison of RNA STEP high gene expression (log2 ratio ≥ 2) versus NGS DNA-based gene copy number gain (copies ≥ 5) for 38 mutually covered genes revealed an accuracy of 93.0% with a positive percentage agreement (PPA) of 69.4% and negative percentage agreement (NPA) of 93.8%. Moderate correlation was observed between platforms (r = 0.53, p < 0.0001). Concordance between high gene expression and gene copy number gain varied by specific gene and some genes had higher accuracy between assays. Clinical implementation of RNA STEP provides gene expression data complementary to NGS and offers a tool for prescreening patients for clinical trials.

2.
Front Genet ; 15: 1377158, 2024.
Article En | MEDLINE | ID: mdl-38566816

Introduction: Medullary thyroid carcinoma (MTC) is an aggressive cancer that is often caused by driver mutations in RET. Splice site variants (SSV) reflect changes in mRNA processing, which may alter protein function. RET SSVs have been described in thyroid tumors in general but have not been extensively studied in MTC. Methods: The prevalence of RET SSVs was evaluated in 3,624 cases with next generation sequence reports, including 25 MTCs. Fisher exact analysis was performed to compare RET SSV frequency in cancers with/without a diagnosis of MTC. Results: All 25 MTCs had at least one of the two most common RET SSVs versus 0.3% of 3,599 cancers with other diagnoses (p < 0.00001). The 11 cancers with non-MTC diagnoses that had the common RET SSVs were 4 neuroendocrine cancers, 4 non-small cell lung carcinomas, 2 non-MTC thyroid cancers, and 1 melanoma. All 25 MTCs analyzed had at least one of the two most common RET SSVs, including 4 with no identified mutational driver. Discussion: The identification of RET SSVs in all MTCs, but rarely in other cancer types, demonstrates that these RET SSVs distinguish MTCs from other cancer types. Future studies are needed to investigate whether these RET SSVs play a pathogenic role in MTC.

4.
Pediatr. aten. prim ; 21(83): 307-312, jul.-sept. 2019.
Article Es | IBECS | ID: ibc-188651

El juego contribuye de manera fundamental al desarrollo de las capacidades intelectuales, emocionales y motoras. En él manifiestan los niños sus vivencias, necesidades y conflictos. La terapia de juego busca un ambiente de confianza, comprensión, respeto y responsabilidad, donde expresen sus problemas mientras juegan, creando una relación que atienda las carencias de sus circunstancias personales y familiares, facilitando el desarrollo de la personalidad y la adquisición progresiva de una madurez personal y social


Play contributes fundamentally to the development of intellectual, emotional and motor skills. Children show trough it their experiences, needs and conflicts. Play therapy seeks an environment of trust, understanding, respect and responsibility, where they express their problems while playing, creating a relationship that addresses the shortcomings of their personal and family circumstances, facilitating the development of personality and the progressive acquisition of personal and social maturity


Humans , Child , Games, Recreational/psychology , Recreation/psychology , Child Development , Personality Development , Parenting/trends , Child Advocacy/trends , Child Welfare/trends , Socialization , Creativity , Child Abuse/prevention & control , Child Rearing/trends , Play and Playthings/psychology
5.
J Am Geriatr Soc ; 67(7): 1444-1453, 2019 07.
Article En | MEDLINE | ID: mdl-30848834

BACKGROUND/OBJECTIVE: In nursing homes across the world, and particularly in Spain, there are concerns that psychotropic medications are being overused. For older Spanish nursing home residents who had dementia, we sought to evaluate the association between applying interventions designed to reduce inappropriate psychotropic medication use and subsequent psychotropic use. DESIGN: Retrospective, propensity score-matched, controlled, patient-level observational analysis. SETTING: A total of 45 nursing homes in Spain. PARTICIPANTS: A total of 1653 nursing home residents, aged 70 to 99 years, who had dementia and were prescribed an antipsychotic, anxiolytic, or antidepressant medication, 606 of whom received an intervention; the remainder served as propensity score-matched controls. INTERVENTION: Team Rounds, Screening Tool of Older Persons' Prescriptions (STOPP)/Screening Tool to Alert Doctors to Right Treatment (START) criteria, or a Patient Decision Aid. MEASUREMENTS: At 2 and 4 weeks following intervention: change from baseline drug class-specific milligram-equivalent daily dose (MEDD); at 2 weeks: patient falls and restraint use. RESULTS: Within each intervention/drug-class cohort, intervention patients and matched controls had similar baseline demographic characteristics, Charlson scores, lengths of admission, and drug class-specific MEDDs. Compared to controls, patients exposed to Team Rounds experienced a 23.3% (95% confidence interval [CI] = 13.9%-32.8%) reduction in antipsychotic and a 23.1% (95% CI = 18.3%-28.0%) reduction in anxiolytic MEDDs; those exposed to Patient Decision Aids had a 24.8% (95% CI = 15.6%-33.9%) reduction in antipsychotic and a 31.8% (95% CI = 25.5%-38.2%) reduction in anxiolytic MEDDs; and those exposed to STOPP/START application had a 27.7% (95% CI = 22.4%-33.0%) reduction in antipsychotic and a 39.5% (95% CI = 35.5%-43.5%) reduction in anxiolytic MEDDs. Intervention-associated antidepressant MEDD reductions were statistically significant but less dramatic. Interventions were associated with higher rates of medication discontinuation, but not higher rates of deaths, patient falls, or physical restraints. CONCLUSION: We found strong evidence that the interventions we studied were associated with reduced psychotropic use without commensurate harms, suggesting that such interventions should be incorporated into Spanish nursing home care models. Public reporting of psychotropic medication use in Spanish care homes may encourage care homes to regularly monitor psychotropic medication use and implement such instruments. J Am Geriatr Soc, 2019.


Dementia/drug therapy , Inappropriate Prescribing , Nursing Homes , Practice Patterns, Physicians'/statistics & numerical data , Psychotropic Drugs/therapeutic use , Aged , Aged, 80 and over , Female , Humans , Male , Propensity Score , Quality Improvement , Retrospective Studies , Spain
6.
Blood ; 131(11): 1248-1257, 2018 03 15.
Article En | MEDLINE | ID: mdl-29386198

We investigated the impact of donor-recipient HLA-DPB1 matching on outcomes of allogeneic hematopoietic stem cell transplantation with in vivo T-cell depletion using antithymocyte globulin (ATG) for patients with hematological malignancies. All donor-recipient pairs had high-resolution typing for HLA-A, HLA-B, HLA-C, HLA-DRB1, HLA-DQB1, HLA-DPB1, and HLA-DRB3/4/5 and were matched at HLA-A, HLA-B, HLA-C, and HLA-DRB1. HLA-DPB1 mismatches were categorized by immunogenicity of the DPB1 matching using the DPB T-cell epitope tool. Of 1004 donor-recipient pairs, 210 (21%) were DPB1 matched, 443 (44%) had permissive mismatches, 184 (18%) had nonpermissive mismatches, in graft-versus-host (GVH) direction, and 167 (17%) had nonpermissive mismatches in host-versus-graft (HVG) direction. Compared with HLA-DPB1 permissive mismatched pairs, nonpermissive GVH mismatched pairs had the highest risk for grade II to IV acute graft-versus-host disease (aGVHD) (hazard ratio [HR], 1.4; P = .01) whereas matched pairs had the lowest risk (HR, 0.5; P < .001). Grade III to IV aGVHD was only increased with HLA-DPB1 nonpermissive GVH mismatched pairs (HR, 2.3; P = .005). The risk for disease progression was lower with any HLA-DPB1 mismatches, permissive or nonpermissive. However, the favorable prognosis of HLA-DPB1 mismatches on disease progression was observed only in peripheral blood stem cell recipients who were in the intermediate-risk group by the Disease Risk Index (HR, 0.4; P = .001) but no other risk groups. Our results suggest avoidance of nonpermissive GVH HLA-DPB1 mismatches for lowering the risk for grade II to IV and III to IV aGVHD. Permissive or nonpermissive HVG HLA-DPB1 mismatches may be preferred over HLA-DPB1 matches in the intermediate-risk patients to decrease the risk for disease progression.


HLA-DRB1 Chains , Hematologic Neoplasms , Hematopoietic Stem Cell Transplantation , Histocompatibility Testing , Lymphocyte Depletion , T-Lymphocytes , Acute Disease , Adult , Aged , Allografts , Disease-Free Survival , Female , Graft vs Host Disease/metabolism , Graft vs Host Disease/mortality , Graft vs Host Disease/pathology , Graft vs Host Disease/prevention & control , Hematologic Neoplasms/metabolism , Hematologic Neoplasms/mortality , Hematologic Neoplasms/pathology , Hematologic Neoplasms/therapy , Humans , Male , Middle Aged , Risk Factors , Survival Rate
7.
Molecules ; 20(7): 12436-49, 2015 Jul 08.
Article En | MEDLINE | ID: mdl-26184131
8.
Med. clín (Ed. impr.) ; 143(1): 6-12, jul. 2014. tab
Article Es | IBECS | ID: ibc-123796

Fundamento y objetivo: El valor de los polimorfismos PON1-Q192R, CYP2C19*2 y *17 en la identificación del paciente pobre respondedor a clopidogrel es controvertido. Evaluamos la relación de los polimorfismos señalados con la reactividad plaquetar y el pronóstico a medio plazo en pacientes con síndrome coronario agudo remitidos para cateterismo cardíaco. Pacientes y método: Se incluyeron prospectivamente 247 pacientes con síndrome coronario agudo. En todos se dispuso del genotipo (CYP2C19*2, CYP2C19*17, PON1-Q192R). Medimos la reactividad plaquetar con VerifyNow®. Se registraron episodios adversos intrahospitalarios (muerte, infarto periprocedimiento) y durante el seguimiento (muerte, infarto de miocardio, angina, accidente cerebrovascular, trombosis del stent). Resultados: Los portadores de alelos *2 de CYP2C19 presentaron una mayor reactividad plaquetar residual (PRU, media [DE] de 252 [76] frente a 287 [74], p = 0,002). Los portadores de alelos *17 de CYP2C19*17 o de alelos T(Q) de PON1-Q192R no presentaron una reactividad distinta (p > 0,05). En un modelo multivariado para la predicción de pobre respuesta a clopidogrel, la contribución de CYP2C19*2 fue modesta (Wald = 7,5; odds ratio [OR] para ≥ 1 alelo *2 = 2.786, intervalo de confianza del 95% [IC 95%] 1.337-5.808). Fueron factores protectores independientes la hemoglobina basal (OR 0,666, IC 95% 0,555-0,801) y el uso concomitante de estatinas (OR 0,376, IC 95% 0,162-0,873). El índice de masa corporal fue un factor de riesgo (OR 1.074, IC 95% 1.005-1.148). Los polimorfismos estudiados no predijeron episodios adversos. Conclusiones: El polimorfismo de CYP2C19*2 influyó en la respuesta a clopidogrel de forma modesta, pero no condicionó un pronóstico distinto en pacientes con síndrome coronario agudo. Los polimorfismos de PON1-Q192R y CYP2C19*17 no influyeron en la reactividad plaquetar ni el pronóstico (AU)


Background and objective: Previous studies have shown that the metabolism of P2Y12 receptor blockers is influenced not only by CYP2C19*2 but also by PON1-Q192R alelles. We aimed to evaluate the impact of CYP2C19*2 and PON1-Q192R polymorphisms carriage in platelet reactivity and clinical outcome in patients with ischemic heart disease undergoing cardiac catheterization. Patients and method: We recruited prospectively patients with acute coronary syndrome undergoing cardiac catheterization (n = 247). We evaluated the genotype (CYP2C19*2, CYP2C19*17, PON1-Q192R) with TaqMan1 assay and platelet aggregometry in all patients. We assessed both in and out-of-hospital events (unstable angina, periprocedural and spontaneous myocardial infarction, myocardial infarction, all-cause death, stent thrombosis and stroke) during follow-up. Results: Carriers of CYP2C19*2 alleles showed a significant higher residual platelet reactivity (PRU, mean [SD], 252 [76] vs. 287 [74], P = .002). Carriers of PON1-Q192R CT(RQ) and TT(QQ) alleles and CYP2C19*17 did not present a different response to clopidogrel. In a multivariable setting for the prediction of platelet reactivity, the contribution of CYP2C19*2 was modest (Wald = 7.5; odds ratio [OR] for 1 alelle *2 = 2,786, 95% confidence interval [95% CI] 1,337-5,808). Independent predictors were baseline hemoglobin levels (g/dL, OR .666, 95% CI .555-.801) and the use of statins (OR .376, 95% CI .162-.873). Body mass index was a risk factor (OR 1,074, CI 95% 1,005-1,148). Studied polymorphisms did not predict an adverse outcome (AU)


Humans , Polymorphism, Genetic/genetics , Platelet Aggregation Inhibitors/therapeutic use , Acute Coronary Syndrome/drug therapy , Platelet Activation , Myocardial Ischemia/physiopathology , Prospective Studies , Genotyping Techniques , DNA/analysis , Aspirin/therapeutic use
10.
Med Clin (Barc) ; 143(1): 6-12, 2014 Jul 07.
Article Es | MEDLINE | ID: mdl-23850044

BACKGROUND AND OBJECTIVE: Previous studies have shown that the metabolism of P2Y12 receptor blockers is influenced not only by CYP2C19 2 but also by PON1-Q192R alelles. We aimed to evaluate the impact of CYP2C19 2 and PON1-Q192R polymorphisms carriage in platelet reactivity and clinical outcome in patients with ischemic heart disease undergoing cardiac catheterization. PATIENTS AND METHOD: We recruited prospectively patients with acute coronary syndrome undergoing cardiac catheterization (n=247). We evaluated the genotype (CYP2C19 2, CYP2C19 17, PON1-Q192R) with TaqMan(®) assay and platelet aggregometry in all patients. We assessed both in and out-of-hospital events (unstable angina, periprocedural and spontaneous myocardial infarction, myocardial infarction, all-cause death, stent thrombosis and stroke) during follow-up. RESULTS: Carriers of CYP2C19 2 alleles showed a significant higher residual platelet reactivity (PRU, mean [SD], 252 [76] vs. 287 [74], P=.002). Carriers of PON1-Q192R CT(RQ) and TT(QQ) alleles and CYP2C19 17 did not present a different response to clopidogrel. In a multivariable setting for the prediction of platelet reactivity, the contribution of CYP2C19 2 was modest (Wald=7.5; odds ratio [OR] for ≥ 1 alelle 2=2,786, 95% confidence interval [95% CI] 1,337-5,808). Independent predictors were baseline hemoglobin levels (g/dL, OR .666, 95% CI .555-.801) and the use of statins (OR .376, 95% CI .162-.873). Body mass index was a risk factor (OR 1,074, CI 95% 1,005-1,148). Studied polymorphisms did not predict an adverse outcome. CONCLUSIONS: CYP2C19 2 polymorphism influenced moderately platelet reactivity but did not show an impact on clinical outcome in patients with acute coronary syndrome. Neither CYP2C19 17 nor PON1-Q192R polymorphisms showed an impact upon platelet reactivity or outcome.


Acute Coronary Syndrome/genetics , Cytochrome P-450 CYP2C19/physiology , Platelet Aggregation Inhibitors/pharmacokinetics , Platelet Aggregation/genetics , Polymorphism, Single Nucleotide , Purinergic P2Y Receptor Antagonists/pharmacokinetics , Ticlopidine/analogs & derivatives , Acute Coronary Syndrome/blood , Acute Coronary Syndrome/drug therapy , Aged , Alleles , Angina, Unstable/epidemiology , Aryldialkylphosphatase/genetics , Aryldialkylphosphatase/physiology , Biotransformation/genetics , Cardiac Catheterization , Clopidogrel , Coronary Thrombosis/epidemiology , Cytochrome P-450 CYP2C19/genetics , Female , Follow-Up Studies , Genotype , Hospital Mortality , Humans , Incidence , Male , Middle Aged , Myocardial Infarction/epidemiology , Platelet Aggregation/drug effects , Platelet Aggregation Inhibitors/pharmacology , Platelet Aggregation Inhibitors/therapeutic use , Prognosis , Prospective Studies , Purinergic P2Y Receptor Antagonists/pharmacology , Purinergic P2Y Receptor Antagonists/therapeutic use , Risk Factors , Stents/adverse effects , Stroke/epidemiology , Survival Analysis , Ticlopidine/pharmacokinetics , Ticlopidine/pharmacology , Ticlopidine/therapeutic use
11.
Blood ; 121(22): 4603-10, 2013 May 30.
Article En | MEDLINE | ID: mdl-23596045

A single mismatch in highly expressed HLA-A, -B, -C, and -DRB1 loci (HEL) is associated with worse outcomes in hematopoietic stem cell transplantation, while less is known about the cumulative impact of mismatches in the lesser expressed HLA loci DRB3/4/5, DQ, and DP (LEL). We studied whether accumulation of LEL mismatches is associated with deleterious effects in 3853 unrelated donor transplants stratified according to number of matches in the HEL. In the 8/8 matched HEL group, LEL mismatches were not associated with any adverse outcome. Mismatches at HLA-DRB1 were associated with occurrence of multiple LEL mismatches. In the 7/8 HEL group, patients with 3 or more LEL mismatches scored in the graft-versus-host vector had a significantly higher risk of mortality (1.45 and 1.43) and transplant-related mortality (1.68 and 1.54) than the subgroups with 0 or 1 LEL mismatches. No single LEL locus had a more pronounced effect on clinical outcome. Three or more LEL mismatches are associated with lower survival after 7/8 HEL matched transplantation. Prospective evaluation of matching for HLA-DRB3/4/5, -DQ, and -DP loci is warranted to reduce posttransplant risks in donor-recipient pairs matched for 7/8 HEL.


Graft Rejection/immunology , HLA-DP Antigens/immunology , HLA-DQ Antigens/immunology , HLA-DR beta-Chains/immunology , Hematopoietic Stem Cell Transplantation/adverse effects , Adult , Female , Graft Rejection/mortality , HLA-DRB3 Chains/immunology , HLA-DRB4 Chains/immunology , HLA-DRB5 Chains/immunology , Histocompatibility , Humans , Incidence , Kaplan-Meier Estimate , Male , Middle Aged , Risk Factors , Tissue Donors , Young Adult
12.
Am Heart J ; 165(3): 400-7, 2013 Mar.
Article En | MEDLINE | ID: mdl-23453110

OBJECTIVES: We used virtual histology-intravascular ultrasound (VH-IVUS) to investigate the characteristics of culprit lesions in acute coronary syndromes (ACS). BACKGROUND: Autopsy studies of patients who died of ACS have shown that culprit atheromatous plaques almost always contain a large lipid-necrotic core covered by a ruptured thin fibrous cap. There are no studies of sufficient size that have assessed the in vivo characterization of plaques responsible for ACS. METHODS: Patients undergoing angiography for stable ischemic heart disease and ACS (with and without ST-segment elevation) were enrolled in a prospective study. Lesions in patients with stable angina were classified as stable and those in patients with ACS as culprit or nonculprit. RESULTS: The study included 189 patients: VH-IVUS was used to assess 253 lesions (73 stable, 82 nonculprit, and 98 culprit lesions). The thin-cap fibroatheroma phenotype (VH-TCFA) was more frequent among lesions in patients with ACS (55.1% in culprit lesions, 36.6% in nonculprit lesions and 14.4% in stable lesions; P = .007). The arc of the VH-TCFA exposed to the vessel lumen was significantly greater in culprit lesions than in nonculprit lesions (122.28° ± 58 vs 89.46° ± 52; respectively; P = .007). Multivariate analysis showed that VH-TCFA (OR 2.1; P = .033), calcified nodules (OR 2.1; P = .046), positive remodeling (OR 3.5; P < .001) and necrotic core volume (OR 1.02;P = .009) were independently associated with a clinically identified culprit lesion. CONCLUSIONS: Plaque phenotype, rather than the proportion of each tissue, appears to be associated with plaque instability. VH-TCFA, particularly subtype IV, is associated with lesions responsible for ACS.


Acute Coronary Syndrome/pathology , Coronary Vessels/pathology , Plaque, Atherosclerotic/pathology , Ultrasonography, Interventional/methods , Acute Coronary Syndrome/diagnostic imaging , Aged , Coronary Angiography , Coronary Vessels/diagnostic imaging , Female , Humans , Male , Middle Aged , Plaque, Atherosclerotic/diagnostic imaging , Prospective Studies
13.
J Am Med Dir Assoc ; 14(3): 213-7, 2013 Mar.
Article En | MEDLINE | ID: mdl-23246184

BACKGROUND: Psychotropic medications are very frequently used in nursing homes and have been associated with falls. Little is known on the potential differences between types and subtypes of these medications, and also regarding different prescription patterns. METHODS: Data from 4502 residents living in 41 nursing homes belonging to a Spanish private chain were collected during a study period of 1 month and analyzed. Frequency of injurious and noninjurious falls were investigated for the following groups of psychotropic medications: typical neuroleptics; atypical neuroleptics; antidepressants; short and middle half-life benzodiazepines (BZD); long half-life BZD; BZD (of any type) administered only if needed; other hypnotic, sedative or anxiolytic drugs; cholinesterase inhibitors, and memantine. OR (95% CI) were calculated using regression analysis adjusted for age, sex, number of medications, physical restraint, and cognitive performance. RESULTS: Mean age (SD) was 84.3 (8.6) and 73.4% of the subjects were female. Psychotropic medication was prescribed to 2987 residents (66.3%), and there were 490 falls. Total falls were associated with use of atypical neuroleptics (OR 1.50, CI 1.17‒1.94), antidepressants (OR 1.36, CI 1.03‒1.78), short and middle half-life BZD (OR 1.27, CI 1.00‒1.60), long half-life BZD (OR 1.65, CI 1.14‒2.38), cholinesterase inhibitors (OR 1.42, CI 1.05‒1.92), and memantine (OR 1.90, CI 1.32‒2.74). Injurious falls were associated with typical neuroleptics (OR 1.77, CI 0.99‒3.17), atypical neuroleptics (OR 1.64, CI 1.11‒2.44), and long half-life BZD (OR 2.57, CI 1.56‒4.25). The use of 2 or more psychotropics in combination was also associated with a significant increase of total falls and injurious falls. CONCLUSIONS: Psychotropic medications were highly prescribed in the studied sample and were associated with falls. The most unsafe profile was detected for long half-life BZD, neuroleptics, and psychotropics in combination.


Accidental Falls/statistics & numerical data , Nursing Homes , Psychotropic Drugs/therapeutic use , Adult , Aged , Aged, 80 and over , Chi-Square Distribution , Cross-Sectional Studies , Female , Geriatric Assessment , Humans , Male , Middle Aged , Psychotropic Drugs/adverse effects , Risk Factors , Spain
14.
Tissue Antigens ; 80(4): 341-55, 2012 Oct.
Article En | MEDLINE | ID: mdl-22994155

Human leukocyte antigen (HLA) typing was done in 426 Lebanese subjects of 88 families, in which 347 haplotypes were identified. The A, B, C, DRB1, DRB3/4/5, DQB1 and DPB1 loci were typed at high resolution. This study shows that information theory, as originally developed by Claude Shannon in 1948, provides a promising theoretical foundation to study the population genetics of a genetic system like HLA. Although Lebanese carry HLA alleles found in other populations, the association of these alleles into haplotypes is quite unique. Comparisons are made with the main ethnic groups. Two haplotypes well represented in the Lebanese population are not identified in any global population: L1 = {A*26:01:01 - B*35:01:01:01- C*04:01:01:01- DRB1*16:01:01 - DRB5*02:02 - DQB1*05:02:01} and L2 = {A*02:02 - B*41:01- C*17:01:01:01 -DRB1*11:04:01 - DRB3*02:02:01:01- DQB1*03:01:01:01}. By studying linkage disequilibrium in two blocks at a time, with the division of the blocks at different levels in consecutive cycles, conserved haplotypes in full linkage disequilibrium come to light, such as {A*26:01:01- B*35:01:01:01 - C*04:01:01:01 - DRB1*16:01:01 - DRB5*02:02 - DQB1*05:02:01- DPB1*03:01:01} and {A*33:01:01 - B*14:02:01 - C*08:02:01 - DRB1*01:02:01- DQB1*05:01:01:01 - DPB1*04:01:01:01}.


Alleles , Ethnicity/genetics , Genetic Variation/immunology , HLA Antigens/genetics , Female , Gene Frequency , Genetics, Population , HLA Antigens/classification , HLA Antigens/immunology , Haplotypes , Histocompatibility Testing , Humans , Information Theory , Lebanon , Linkage Disequilibrium , Male , Molecular Typing
15.
Cytokine ; 60(2): 417-22, 2012 Nov.
Article En | MEDLINE | ID: mdl-22898395

Reactivation of cytomegalovirus (CMV) in the bloodstream may occur upon severe immune defect or suppression during lifetime. We performed a case controlled study to probe the effects of the host cytokine gene single nucleotide polymorphisms (SNPs) on CMV reactivation. The study subjects were patients with cancer but without stem cell transplantation. The cases were patients tested positive for CMV pp65 antigenemia and the controls were those tested negative. Each case was matched to two controls for similar underlying disease, sex, age, and CMV antibody test status. Ninety cases and 182 controls were chosen and typed for 48 SNPs within 13 cytokines. Alleles of three cytokines were found to be significantly associated with CMV reactivation. Associated with risk of CMV reactivation were the TGFß1-2 allele (10C and 25G) with a hazard ratio (HR) of 1.97% and 95% confidence interval (CI) of 1.14-3.41 and the IL-4-3 allele (-1098T, -590T, and -33T) (HR, 2.08) (95% CI, 1.19-3.63); associated with protection was the IL-2-2 allele (-330T and +166G) (HR, 0.58) (95% CI, 0.35-0.97). Gene dosage, synergism, and antagonism among these alleles were also observed. Our results suggest roles of immunogenetic variations on the immunity against CMV, which may allow clinical CMV risk stratification. Further studies of these alleles are warranted.


Cytokines/genetics , Cytomegalovirus/physiology , Neoplasms/immunology , Neoplasms/virology , Polymorphism, Single Nucleotide/genetics , Virus Activation/genetics , Alleles , Case-Control Studies , Gene Frequency/genetics , Genetic Testing , Humans , Risk Factors
16.
Philos Trans R Soc Lond B Biol Sci ; 367(1590): 820-9, 2012 Mar 19.
Article En | MEDLINE | ID: mdl-22312049

The human leucocyte antigen (HLA) system shows extensive variation in the number and function of loci and the number of alleles present at any one locus. Allele distribution has been analysed in many populations through the course of several decades, and the implementation of molecular typing has significantly increased the level of diversity revealing that many serotypes have multiple functional variants. While the degree of diversity in many populations is equivalent and may result from functional polymorphism(s) in peptide presentation, homogeneous and heterogeneous populations present contrasting numbers of alleles and lineages at the loci with high-density expression products. In spite of these differences, the homozygosity levels are comparable in almost all of them. The balanced distribution of HLA alleles is consistent with overdominant selection. The genetic distances between outbred populations correlate with their geographical locations; the formal genetic distance measurements are larger than expected between inbred populations in the same region. The latter present many unique alleles grouped in a few lineages consistent with limited founder polymorphism in which any novel allele may have been positively selected to enlarge the communal peptide-binding repertoire of a given population. On the other hand, it has been observed that some alleles are found in multiple populations with distinctive haplotypic associations suggesting that convergent evolution events may have taken place as well. It appears that the HLA system has been under strong selection, probably owing to its fundamental role in varying immune responses. Therefore, allelic diversity in HLA should be analysed in conjunction with other genetic markers to accurately track the migrations of modern humans.


Demography , Emigration and Immigration/history , Evolution, Molecular , Genetic Variation , Genetics, Population/methods , HLA Antigens/genetics , Founder Effect , Genetic Markers/genetics , Haplotypes/genetics , History, Ancient , Humans , Selection, Genetic
17.
Rev. colomb. cardiol ; 19(1): 11-17, ene.-feb. 2012.
Article Es | LILACS | ID: lil-648036

Introducción y objetivos: la incorporación de las nuevas guías de actuación de la Sociedad Europea de Cardiología en el síndrome coronario agudo, con coronariografía precoz (24 horas) tras trombólisis, incluso si es efectiva y sin necesidad de demostrar signos de isquemia residual, en los casos en los que no se realiza angioplastia primaria, ha supuesto un reto respecto a la forma tradicional de actuar en los Servicios de Cardiología. Métodos: durante 2007, 2008 y la primera mitad de 2009 se atendieron 266 pacientes con infarto agudo del miocardio con ST elevado tratados con trombólisis. De ellos, y tras excluir los rescates (41), en 94 (42%) se realizó cateterismo dentro de las primeras 24 horas (angiografía del día siguiente) y en los 131 (58%) restantes se siguió una estrategia convencional con test de provocación de isquemia (tratamiento convencional). Resultados: en el primer grupo, la estancia media fue de 7,3 ± 3 días [mediana, rango intercuantílico: 7 (5-8)]. La incidencia de eventos mortales al año fue de 3 (4%). No hubo ningún sangrado mayor; sólo 20 de ellos (22%) presentaron hematomas inguinales mayores de 2 cm. En el segundo, la estancia media fue de 10,2 ± 6,3 días [9 (6-13)], significativamente mayor (p<0,001). El número de eventos mortales al año fue de 7 (11%), sin que se observaran diferencias estadísticamente significativas (p=0,52). Conclusiones: la angiografía del día siguiente se asocia con una reducción de la estancia media respecto al tratamiento convencional. Además, parece mostrar una tendencia (no significativa) de reducción de mortalidad al año, sin que aumente el número de complicaciones hemorrágicas.


Introduction and objectives: The introduction of new practice guidelines of the European Society of Cardiology in acute coronary syndrome with early coronary angiography (24 hours) after thrombolysis, even if it is effective without showing signs of residual ischemia in the cases where primary angioplasty is not performed, has been a challenge over the traditional approach in the Departments of Cardiology. Methods: During 2007, 2008 and the first half of 2009, 266 patients with acute myocardial infarction with ST segment elevation were treated with thrombolysis. After excluding the bailouts (41), in 94 (42%) of them, a catheterization was peformed within the first 24 hours (next day angiography) and the remaining 131 (58%) underwent a conventional strategy with a provocation test to elicit ischemia (conventional treatment). Results: In the first group, the average stay was 7.3 ± 3 days [median interquartile range: 7 (5-8)]. The incidence of fatal events per year was 3 (4%). There were no major bleeding, only 20 of them (22%) had groin hematomas larger than 2 cm. In the second group, the average stay was 10.2 ± 6.3 days [9 (6-13)], significantly higher (p <0.001). The number of fatal events per year was 7 (11%) and no statistically significant differences were observed (p = 0.52). Conclusions: Angiography performed the next day is associated with reduced length of stay compared to conventional treatment. It also seems to show a trend (not significant) of reduction in year mortality without increasing the number of bleeding complications.


Angiography , Angioplasty , Fibrinolysis
19.
Cancer Immunol Immunother ; 61(7): 1113-24, 2012 Jul.
Article En | MEDLINE | ID: mdl-22198309

Cancer survivors often relapse due to evolving drug-resistant clones and repopulating tumor stem cells. Our preclinical study demonstrated that terminal cancer patient's lymphocytes can be converted from tolerant bystanders in vivo into effective cytotoxic T-lymphocytes in vitro killing patient's own tumor cells containing drug-resistant clones and tumor stem cells. We designed a clinical trial combining peginterferon α-2b with imatinib for treatment of stage III/IV gastrointestinal stromal tumor (GIST) with the rational that peginterferon α-2b serves as danger signals to promote antitumor immunity while imatinib's effective tumor killing undermines tumor-induced tolerance and supply tumor-specific antigens in vivo without leukopenia, thus allowing for proper dendritic cell and cytotoxic T-lymphocyte differentiation toward Th1 response. Interim analysis of eight patients demonstrated significant induction of IFN-γ-producing-CD8(+), -CD4(+), -NK cell, and IFN-γ-producing-tumor-infiltrating-lymphocytes, signifying significant Th1 response and NK cell activation. After a median follow-up of 3.6 years, complete response (CR) + partial response (PR) = 100%, overall survival = 100%, one patient died of unrelated illness while in remission, six of seven evaluable patients are either in continuing PR/CR (5 patients) or have progression-free survival (PFS, 1 patient) exceeding the upper limit of the 95% confidence level of the genotype-specific-PFS of the phase III imatinib-monotherapy (CALGB150105/SWOGS0033), demonstrating highly promising clinical outcomes. The current trial is closed in preparation for a larger future trial. We conclude that combination of targeted therapy and immunotherapy is safe and induced significant Th1 response and NK cell activation and demonstrated highly promising clinical efficacy in GIST, thus warranting development in other tumor types.


Gastrointestinal Neoplasms/therapy , Gastrointestinal Stromal Tumors/therapy , Interferon-alpha/administration & dosage , Piperazines/administration & dosage , Polyethylene Glycols/administration & dosage , Pyrimidines/administration & dosage , Aged , Aged, 80 and over , Benzamides , Disease-Free Survival , Gastrointestinal Neoplasms/immunology , Gastrointestinal Stromal Tumors/immunology , Humans , Imatinib Mesylate , Immunotherapy/methods , Interferon alpha-2 , Interferon-alpha/immunology , Interferon-gamma/biosynthesis , Interferon-gamma/immunology , Lymphocytes/immunology , Middle Aged , Recombinant Proteins/administration & dosage , Recurrence , T-Lymphocytes, Cytotoxic/immunology
20.
Blood ; 118(22): 5957-64, 2011 Nov 24.
Article En | MEDLINE | ID: mdl-21967975

Anti-HLA donor-specific Abs (DSAs) have been reported to be associated with graft failure in mismatched hematopoietic stem cell transplantation; however, their role in the development of graft failure in matched unrelated donor (MUD) transplantation remains unclear. We hypothesize that DSAs against a mismatched HLA-DPB1 locus is associated with graft failure in this setting. The presence of anti-HLA Abs before transplantation was determined prospectively in 592 MUD transplantation recipients using mixed-screen beads in a solid-phase fluorescent assay. DSA identification was performed using single-Ag beads containing the corresponding donor's HLA-mismatched Ags. Anti-HLA Abs were detected in 116 patients (19.6%), including 20 patients (3.4%) with anti-DPB1 Abs. Overall, graft failure occurred in 19 of 592 patients (3.2%), including 16 of 584 (2.7%) patients without anti-HLA Abs compared with 3 of 8 (37.5%) patients with DSA (P = .0014). In multivariate analysis, DSAs were the only factor highly associated with graft failure (P = .0001; odds ratio = 21.3). Anti-HLA allosensitization was higher overall in women than in men (30.8% vs 12.1%; P < .0001) and higher in women with 1 (P = .008) and 2 or more pregnancies (P = .0003) than in men. We conclude that the presence of anti-DPB1 DSAs is associated with graft failure in MUD hematopoietic stem cell transplantation.


Antibodies/metabolism , Graft Rejection , HLA Antigens/immunology , Hematopoietic Stem Cell Transplantation , Unrelated Donors , Adolescent , Adult , Aged , Antibodies/physiology , Antibody Specificity , Blood Grouping and Crossmatching , Child , Cohort Studies , Female , Graft Rejection/etiology , Graft Rejection/immunology , Graft Rejection/metabolism , Hematopoietic Stem Cell Transplantation/adverse effects , Humans , Male , Middle Aged , Young Adult
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