From Organelle Morphology to Whole-Plant Phenotyping: A Phenotypic Detection Method Based on Deep Learning.

The analysis of plant phenotype parameters is closely related to breeding, so plant phenotype research has strong practical significance. This paper used deep learning to classify Arabidopsis thaliana from the macro (plant) to the micro level (organelle). First, the multi-output model identifies Arabidopsis accession lines and regression to predict Arabidopsis's 22-day growth status. The experimental results showed that the model had excellent performance in identifying Arabidopsis lines, and the model's classification accuracy was 99.92%. The model also had good performance in predicting plant growth status, and the regression prediction of the model root mean square error (RMSE) was 1.536. Next, a new dataset was obtained by increasing the time interval of Arabidopsis images, and the model's performance was verified at different time intervals. Finally, the model was applied to classify Arabidopsis organelles to verify the model's generalizability. Research suggested that deep learning will broaden plant phenotype detection methods. Furthermore, this method will facilitate the design and development of a high-throughput information collection platform for plant phenotypes.

Spectral intelligent detection for aflatoxin B1 via contrastive learning based on Siamese network.

Aflatoxins, harmful substances found in peanuts, corn, and their derivatives, pose significant health risks. Addressing this, the presented research introduces an innovative MSGhostDNN model, merging contrastive learning with multi-scale convolutional networks for precise aflatoxin detection. The method significantly enhances feature discrimination, achieving an impressive 97.87% detection accuracy with a pre-trained model. By applying Grad-CAM, it further refines the model to identify key wavelengths, particularly 416 nm, and focuses on 40 key wavelengths for optimal performance with 97.46% accuracy. The study also incorporates a task dimensionality reduction approach for continuous learning, allowing effective ongoing aflatoxin spectrum monitoring in peanuts and corn. This approach not only boosts aflatoxin detection efficiency but also sets a precedent for rapid online detection of similar toxins, offering a promising solution to mitigate the health risks associated with aflatoxin exposure.

A Visual Color Response Test Paper for the Detection of Hydrogen Sulfide Gas in the Air.

Hydrogen sulfide (H2S) is widely found in oil and natural gas wells and industrial wastewater tanks. Owing to its high toxicity, the monitoring and detection of H2S in the air is essential. However, recent techniques for the quantitative detection of H2S gas suffer from limitations such as high cost, complicated operation, and insufficient sensitivity, preventing their practical application in industry. Thus, we have developed a portable test paper for real-time and inexpensive monitoring of H2S gas by color changes. The test paper had a significantly low H2S detection limit of 200 ppb, which is considered safe for humans. Moreover, the color of the test paper did not change noticeably when exposed to CO2, N2, O2, and air environments, indicating that the test paper is selective for H2S gas and can be stored for a long time. In addition, we fitted a color difference linear model between the color difference values (ΔE) and the concentrations of H2S gas. The establishment of the linear model substantiates that the test paper can provide accurate intensity information when detecting H2S gas leakage.

Identification of Soybean Mutant Lines Based on Dual-Branch CNN Model Fusion Framework Utilizing Images from Different Organs.

The accurate identification and classification of soybean mutant lines is essential for developing new plant varieties through mutation breeding. However, most existing studies have focused on the classification of soybean varieties. Distinguishing mutant lines solely by their seeds can be challenging due to their high genetic similarities. Therefore, in this paper, we designed a dual-branch convolutional neural network (CNN) composed of two identical single CNNs to fuse the image features of pods and seeds together to solve the soybean mutant line classification problem. Four single CNNs (AlexNet, GoogLeNet, ResNet18, and ResNet50) were used to extract features, and the output features were fused and input into the classifier for classification. The results demonstrate that dual-branch CNNs outperform single CNNs, with the dual-ResNet50 fusion framework achieving a 90.22 ± 0.19% classification rate. We also identified the most similar mutant lines and genetic relationships between certain soybean lines using a clustering tree and t-distributed stochastic neighbor embedding algorithm. Our study represents one of the primary efforts to combine various organs for the identification of soybean mutant lines. The findings of this investigation provide a new path to select potential lines for soybean mutation breeding and signify a meaningful advancement in the propagation of soybean mutant line recognition technology.

Quantitative detection of Aflatoxin B1 by subpixel CNN regression.

Aflatoxin is a highly toxic substance dispersed in peanuts, which seriously harms the health of humans and animals. In this paper, we propose a new method for aflatoxin B1(AFB1) detection inspired by quantitative remote sensing. Firstly, we obtained the relative content of AFB1 at the sub-pixel level by subpixel decomposition (endmember extraction, nonnegative matrix decomposition). Then we modified the transfer learning models (LeNet5, AlexNet, VGG16, and ResNet18) to construct a deep learning regression network for quantitative detection of AFB1. There are 67,178 pixels used for training and 67,164 pixels used for testing. After subpixel decomposition, each aflatoxin pixel was determined to contain content, and each pixel had 400 hyperspectral values (415-799 nm). The experimental results showed that, among the four models, the modified ResNet18 model achieved the best effect, with R2 of 0.8898, RMSE of 0.0138, and RPD of 2.8851. Here, we implemented a sub-pixel model for quantitative AFB1 detection and proposed a regression method based on deep learning. Meanwhile, the modified convolution classification model has high predictive ability and robustness. This method provides a new scheme in designing the sorting machine and has practical value.

A novel method for peanut variety identification and classification by Improved VGG16.

Crop variety identification is an essential link in seed detection, phenotype collection and scientific breeding. This paper takes peanut as an example to explore a new method for crop variety identification. Peanut is a crucial oil crop and cash crop. The yield and quality of different peanut varieties are different, so it is necessary to identify and classify different peanut varieties. The traditional image processing method of peanut variety identification needs to extract many features, which has defects such as intense subjectivity and insufficient generalization ability. Based on the deep learning technology, this paper improved the deep convolutional neural network VGG16 and applied the improved VGG16 to the identification and classification task of 12 varieties of peanuts. Firstly, the peanut pod images of 12 varieties obtained by the scanner were preprocessed with gray-scale, binarization, and ROI extraction to form a peanut pod data set with a total of 3365 images of 12 varieties. A series of improvements have been made to VGG16. Remove the F6 and F7 fully connected layers of VGG16. Add Conv6 and Global Average Pooling Layer. The three convolutional layers of conv5 have changed into Depth Concatenation and add the Batch Normalization(BN) layers to the model. Besides, fine-tuning is carried out based on the improved VGG16. We adjusted the location of the BN layers. Adjust the number of filters for Conv6. Finally, the improved VGG16 model's training test results were compared with the other classic models, AlexNet, VGG16, GoogLeNet, ResNet18, ResNet50, SqueezeNet, DenseNet201 and MobileNetv2 verify its superiority. The average accuracy of the improved VGG16 model on the peanut pods test set was 96.7%, which was 8.9% higher than that of VGG16, and 1.6-12.3% higher than that of other classical models. Besides, supplementary experiments were carried out to prove the robustness and generality of the improved VGG16. The improved VGG16 was applied to the identification and classification of seven corn grain varieties with the same method and an average accuracy of 90.1% was achieved. The experimental results show that the improved VGG16 proposed in this paper can identify and classify peanut pods of different varieties, proving the feasibility of a convolutional neural network in variety identification and classification. The model proposed in this experiment has a positive significance for exploring other Crop variety identification and classification.

Aflatoxin rapid detection based on hyperspectral with 1D-convolution neural network in the pixel level.

Aflatoxin is commonly exists in moldy foods, it is classified as a class one carcinogen by the World Health Organization. In this paper, we used one dimensional convolution neural network (1D-CNN) to classify whether a pixel contains aflatoxin. Firstly we found the best combination of 1D-CNN parameters were epoch = 30, learning rate = 0.00005 and 'relu' for active function, the highest test accuracy reached 96.35% for peanut, 92.11% for maize and 94.64% for mix data. Then we compared 1D-CNN with feature selection and methods in other papers, result shows that neural network has greatly improved the detection efficiency than feature selection. Finally we visualized the classification result of different training 1D-CNN networks. This research provides the core algorithm for the intelligent sorter with aflatoxin detection function, which is of positive significance for grain processing and the prenatal detoxification of foreign trade enterprises.

Analysis of Behavior Trajectory Based on Deep Learning in Ammonia Environment for Fish.

Ammonia can be produced by the respiration and excretion of fish during the farming process, which can affect the life of fish. In this paper, to research the behavior of fish under different ammonia concentration and make the corresponding judgment and early warning for the abnormal behavior of fish, the different ammonia environments are simulated by adding the ammonium chloride into the water. Different from the existing methods of directly artificial observation or artificial marking, this paper proposed a recognition and analysis of behavior trajectory approach based on deep learning. Firstly, the three-dimensional spatial trajectories of fish are drawn by three-dimensional reconstruction. Then, the influence of different concentrations of ammonia on fish is analyzed according to the behavior trajectory of fish in different concentrations of ammonia. The results of comparative experiments show that the movement of fish and vitality decrease significantly, and the fish often stagnates in the water of containing ammonium chloride. The proposed approach can provide a new idea for the behavior analysis of animal.

Pixel-level aflatoxin detecting in maize based on feature selection and hyperspectral imaging.

Aflatoxin is highly toxic and is easily found in maize, a little aflatoxin can induce liver cancer. In this paper, we used hyperspectral data in the pixel-level to build the aflatoxin classifying model, each of the pixel have 600 hyperspectral bands and labeled 'clean' or 'contaminated'. We use 3 method to extracted feature bands, one method is to select 4 hyperspectral bands from other articles: 390 nm, 440 nm, 540 nm and 710 nm, another method is to use feature extraction PCA to obtain first 5 pcs to shrink the hyperspectral volume, the third method is to use Fscnca, Fscmrmr, Relieff and Fishier algorithm to select top 10 feature bands. After feature band selection or extraction, we put the feature bands into Random Forest (RF) and K-nearest neighbor (KNN) to classify whether a pixel is polluted by aflatoxin. The highest accurate for feature selection is Relieff, it reached the accuracy of 99.38% with RF classifier and 98.77% in KNN classifier. PCA feature extraction with RF classifier also reached a high accuracy 93.83%. And the 600 bands without feature extraction reached the accuracy of 100%. Feature bands selected from other papers could reach an accuracy of 89.51%. The result shows that the feature extraction performs well on its own data set. And if the computing time is not taken into account, we could use full band to classify the aflatoxin due to its high accuracy.

Image features and DUS testing traits for peanut pod variety identification and pedigree analysis.

BACKGROUND: DUS (Distinctness, Uniformity and Stability) testing of new varieties is an important method for peanut germplasm evaluation and identification of varieties. In order to verify the feasibility of variety identification for peanut DUS testing based on image processing, 2000 peanut pod images from 20 varieties were obtained by a scanner. Initially, six DUS testing traits were quantified using a mathematical method based on image processing technology, and then, size, shape, color and texture features (total 31) were also extracted. Next, the Fisher algorithm was used as a feature selection method to select 'good' features from the extracted features to expand the DUS testing traits set. Finally, support vector machine (SVM) and K-means algorithm were respectively used as recognition model and clustering method for variety identification and pedigree clustering. RESULTS: By the Fisher selection method, a number of significant candidate features for DUS testing were selected which can be used in the DUS testing further; using the top half of these features (about 18) ordered by Fisher discrimination ability, the recognition rate of SVM model was found to be more than 90%, which was better than unordered features. In addition, a pedigree clustering tree of 20 peanut varieties was built based on the K-means clustering method, which can be used in deeper studies of the genetic relationship of different varieties. CONCLUSION: This article can provide a novel reference method for future DUS testing, peanut varieties identification and study of peanut pedigree. © 2018 Society of Chemical Industry.

Experimental and Theoretical Study on the Synergistic Inhibition Effect of Pyridine Derivatives and Sulfur-Containing Compounds on the Corrosion of Carbon Steel in CO2-Saturated 3.5 wt.% NaCl Solution.

The corrosion inhibition performance of pyridine derivatives (4-methylpyridine and its quaternary ammonium salts) and sulfur-containing compounds (thiourea and mercaptoethanol) with different molar ratios on carbon steel in CO2-saturated 3.5 wt.% NaCl solution was investigated by weight loss, potentiodynamic polarization, electrochemical impedance spectroscopy, and scanning electron microscopy. The synergistic corrosion inhibition mechanism of mixed inhibitors was elucidated by the theoretical calculation and simulation. The molecules of pyridine derivative compounds with a larger volume has priority to adsorb on the metal surface, while the molecules of sulfur-containing compounds with a smaller volume fill in vacancies. A dense adsorption film would be formed when 4-PQ and sulfur-containing compounds are added at a proper mole ratio.

Single seed precise sowing of maize using computer simulation.

In order to test the feasibility of computer simulation in field maize planting, the selection of the method of single seed precise sowing in maize is studied based on the quadratic function model Y = A×(D-Dm)2+Ym, which depicts the relationship between maize yield and planting density. And the advantages and disadvantages of the two planting methods under the condition of single seed sowing are also compared: Method 1 is optimum density planting, while Method 2 is the ideal seedling emergence number planting. It is found that the yield reduction rate and yield fluctuation of Method 2 are all lower than those of Method 1. The yield of Method 2 increased by at least 0.043 t/hm2, and showed more advantages over Method 1 with higher yield level. Further study made on the influence of seedling emergence rate on the yield of maize finds that the yields of the two methods are both highly positively correlated with the seedling emergence rate and the standard deviations of their yields are both highly negatively correlated with the seedling emergence rate. For the study of the break-up problem of sparse caused by the method of single seed precise sowing, the definition of seedling missing spots is put forward. The study found that the relationship between number of hundred-dot spot and field seedling emergence rate is as the parabola function y = -189.32x2 + 309.55x - 118.95 and the relationship between number of spot missing seedling and field seedling emergence rate is as the negative exponent function y = 395.69e-6.144x. The results may help to guide the maize seeds production and single seed precise sowing to some extent.

Oil Adulteration Identification by Hyperspectral Imaging Using QHM and ICA.

To investigate the feasibility of identification of qualified and adulterated oil product using hyperspectral imaging(HIS) technique, a novel feature set based on quantized histogram matrix (QHM) and feature selection method using improved kernel independent component analysis (iKICA) is proposed for HSI. We use UV and Halogen excitations in this study. Region of interest(ROI) of hyperspectral images of 256 oil samples from four varieties are obtained within the spectral region of 400-720nm. Radiation indexes extracted from each ROI are used as feature vectors. These indexes are individual band radiation index (RI), difference of consecutive spectral band radiation index (DRI), ratio of consecutive spectral band radiation index (RRI) and normalized DRI (NDRI). Another set of features called quantized histogram matrix (QHM) are extracted by applying quantization on the image histogram from these features. Based on these feature sets, improved kernel independent component analysis (iKICA) is used to select significant features. For comparison, algorithms such as plus L reduce R (plusLrR), Fisher, multidimensional scaling (MDS), independent component analysis (ICA), and principle component analysis (PCA) are also used to select the most significant wavelengths or features. Support vector machine (SVM) is used as the classifier. Experimental results show that the proposed methods are able to obtain robust and better classification performance with fewer number of spectral bands and simplify the design of computer vision systems.

Hybrid Progressive Algorithm to Recognize Type II Diabetic Based on Hair Mineral Element Contents.

In this paper, a hybrid progressive algorithm to recognize type II diabetic based on hair mineral element levels is proposed. Hair samples of 244 cases (Table 1) are collected from 51 healthy persons (one case each person), 47 unchecked diabetics (one case each person) and 73 checked diabetics (two cases each person). 8 hair elements (Mg, Ca, Fe, Cu, Zn, Se, Cr and Mn) are measured. The hybrid progressive algorithm is used to form a scalar quantity (dynamic diagnosis index (DDI)) based hair element levels. The result show that hair may be a good symptom index to judge whether a person affected by diabetes mellitus if appropriate sampling and measuring procedure adopted and proper algorithm to retrieve information from multi-elements levels in hair. Because the non-invasive characteristics of hair analysis, this procedure and algorithm is very suitable at least to large population screening of early diabetes.