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1.
Mol Biol Evol ; 39(4)2022 04 10.
Article in English | MEDLINE | ID: mdl-35383850

ABSTRACT

Somatostatin and its related peptides (SSRPs) form an important family of hormones with diverse physiological roles. The ubiquitous presence of SSRPs in vertebrates and several invertebrate deuterostomes suggests an ancient origin of the SSRP signaling system. However, the existence of SSRP genes outside of deuterostomes has not been established, and the evolutionary history of this signaling system remains poorly understood. Our recent discovery of SSRP-like toxins (consomatins) in venomous marine cone snails (Conus) suggested the presence of a related signaling system in mollusks and potentially other protostomes. Here, we identify the molluscan SSRP-like signaling gene that gave rise to the consomatin family. Following recruitment into venom, consomatin genes experienced strong positive selection and repeated gene duplications resulting in the formation of a hyperdiverse family of venom peptides. Intriguingly, the largest number of consomatins was found in worm-hunting species (>400 sequences), indicating a homologous system in annelids, another large protostome phylum. Consistent with this, comprehensive sequence mining enabled the identification of SSRP-like sequences (and their corresponding orphan receptor) in annelids and several other protostome phyla. These results established the existence of SSRP-like peptides in many major branches of bilaterians and challenge the prevailing hypothesis that deuterostome SSRPs and protostome allatostatin-C are orthologous peptide families. Finally, having a large set of predator-prey SSRP sequences available, we show that although the cone snail's signaling SSRP-like genes are under purifying selection, the venom consomatin genes experience rapid directional selection to target receptors in a changing mix of prey.


Subject(s)
Conotoxins , Conus Snail , Animals , Conotoxins/genetics , Conus Snail/genetics , Neuropeptides , Peptides/genetics , Somatostatin/genetics , Venoms
2.
Commun Biol ; 4(1): 1057, 2021 09 09.
Article in English | MEDLINE | ID: mdl-34504298

ABSTRACT

Plant metabolism depends on cascade reactions mediated by dynamic enzyme assemblies known as metabolons. In this context, the cytochrome P450 (P450) superfamily catalyze key reactions underpinning the unique diversity of bioactive compounds. In contrast to their soluble bacterial counterparts, eukaryotic P450s are anchored to the endoplasmic reticulum membrane and serve as metabolon nucleation sites. Hence, membrane anchoring appears to play a pivotal role in the evolution of complex biosynthetic pathways. Here, a model membrane assay enabled characterization of membrane anchor dynamics by single molecule microscopy. As a model system, we reconstituted the membrane anchor of cytochrome P450 oxidoreductase (POR), the ubiquitous electron donor to all microsomal P450s. The transmembrane segment in the membrane anchor of POR is relatively conserved, corroborating its functional importance. We observe dynamic colocalization of the POR anchors in our assay suggesting that membrane anchoring might promote intermolecular interactions and in this way impact assembly of metabolic multienzyme complexes.


Subject(s)
Cytochrome P-450 Enzyme System/metabolism , Plants/enzymology , Endoplasmic Reticulum/metabolism , Membrane Proteins/metabolism , Oxidation-Reduction
3.
Chemistry ; 27(23): 6917-6922, 2021 Apr 21.
Article in English | MEDLINE | ID: mdl-33411939

ABSTRACT

Liposomes are versatile three-dimensional, biomaterial-based frameworks that can spatially enclose a variety of organic and inorganic biomaterials for advanced targeted-delivery applications. Implementation of external-stimuli-controlled release of their cargo will significantly augment their wide application for liposomal drug delivery. This paper presents the synthesis of a carbohydrate-derived lipid, capable of changing its conformation depending on the presence of Zn2+ : an active state in the presence of Zn2+ ions and back to an inactive state in the absence of Zn2+ or when exposed to Na2 EDTA, a metal chelator with high affinity for Zn2+ ions. This is the first report of a lipid triggered by the presence of a metal chelator. Total internal reflection fluorescence microscopy and a single-liposome study showed that it indeed was possible for the lipid to be incorporated into the bilayer of stable liposomes that remained leakage-free for the fluorescent cargo of the liposomes. On addition of EDTA to the liposomes, their fluorescent cargo could be released as a result of the membrane-incorporated lipids undergoing a conformational change.


Subject(s)
Drug Delivery Systems , Liposomes , Carbohydrates , Chelating Agents , Membrane Lipids
4.
ACS Appl Mater Interfaces ; 12(1): 380-389, 2020 Jan 08.
Article in English | MEDLINE | ID: mdl-31804792

ABSTRACT

Inhaled antibiotic treatment of cystic fibrosis-related bacterial biofilm infections is challenging because of the pathological environment of the lungs. Here, we present an "environment-adaptive" nanoparticle composed of a solid poly lactic-co-glycolic acid (PLGA) core and a mucus-inert, enzymatically cleavable shell of d-α-tocopheryl polyethylene glycol 1000 succinate (TPGS) for the site-specific delivery of antibiotics to bacterial biofilms via aerosol administration. The hybrid nanoparticles with ultrasmall size were self-assembled via a nanoprecipitation process by using a facile microfluidic method. The interactions of the nanoparticles with the biological barriers were comprehensively investigated by using cutting-edge techniques (e.g., quartz crystal microbalance with dissipation monitoring, total internal reflection fluorescence microscopy-based particle tracking, in vitro biofilm model cultured in a flow-chamber system, and quantitative imaging analysis). Our results suggest that the mucus-inert, enzymatically cleavable TPGS shell enables the nanoparticles to penetrate through the mucus, accumulate in the deeper layer of the biofilms, and serve as sustained release depot, thereby improving the killing efficacy of azithromycin (a macrolide antibiotic) against biofilm-forming Pseudomonas aeruginosa. In conclusion, the ultrasmall TPGS-PLGA hybrid nanoparticles represent an efficient delivery system to overcome the multiple barriers and release antibiotics in a sustained manner in the vicinity of the biofilm-forming bacteria.


Subject(s)
Anti-Bacterial Agents/chemistry , Biofilms/drug effects , Drug Carriers/administration & dosage , Drug Carriers/chemistry , Nanoparticles/chemistry , Polyglycolic Acid/administration & dosage , Polyglycolic Acid/chemistry , Pseudomonas aeruginosa/drug effects , Administration, Inhalation , Anti-Bacterial Agents/pharmacology , Microbial Sensitivity Tests
5.
Elife ; 72018 10 04.
Article in English | MEDLINE | ID: mdl-30284535

ABSTRACT

Morphogens provide positional information and their concentration is key to the organized development of multicellular organisms. Nitrogen-fixing root nodules are unique organs induced by Nod factor-producing bacteria. Localized production of Nod factors establishes a developmental field within the root where plant cells are reprogrammed to form infection threads and primordia. We found that regulation of Nod factor levels by Lotus japonicus is required for the formation of nitrogen-fixing organs, determining the fate of this induced developmental program. Our analysis of plant and bacterial mutants shows that a host chitinase modulates Nod factor levels possibly in a structure-dependent manner. In Lotus, this is required for maintaining Nod factor signalling in parallel with the elongation of infection threads within the nodule cortex, while root hair infection and primordia formation are not influenced. Our study shows that infected nodules require balanced levels of Nod factors for completing their transition to functional, nitrogen-fixing organs.


Subject(s)
Chitinases/genetics , Nitrogen-Fixing Bacteria/genetics , Root Nodules, Plant/microbiology , Symbiosis/genetics , Chitinases/metabolism , Gene Expression Regulation, Plant , Lipopolysaccharides/genetics , Lotus/chemistry , Lotus/genetics , Nitrogen/metabolism , Nitrogen-Fixing Bacteria/metabolism , Plant Roots/metabolism , Plant Roots/microbiology , Root Nodules, Plant/genetics
6.
Elife ; 72018 06 29.
Article in English | MEDLINE | ID: mdl-29957177

ABSTRACT

Recognition of Nod factors by LysM receptors is crucial for nitrogen-fixing symbiosis in most legumes. The large families of LysM receptors in legumes suggest concerted functions, yet only NFR1 and NFR5 and their closest homologs are known to be required. Here we show that an epidermal LysM receptor (NFRe), ensures robust signalling in L. japonicus. Mutants of Nfre react to Nod factors with increased calcium spiking interval, reduced transcriptional response and fewer nodules in the presence of rhizobia. NFRe has an active kinase capable of phosphorylating NFR5, which in turn, controls NFRe downstream signalling. Our findings provide evidence for a more complex Nod factor signalling mechanism than previously anticipated. The spatio-temporal interplay between Nfre and Nfr1, and their divergent signalling through distinct kinases suggests the presence of an NFRe-mediated idling state keeping the epidermal cells of the expanding root system attuned to rhizobia.


Subject(s)
Gene Expression Regulation, Plant , Lipopolysaccharides/genetics , Lotus/metabolism , Plant Proteins/genetics , Receptors, Cell Surface/genetics , Rhizobium/metabolism , Root Nodules, Plant/metabolism , Calcium/metabolism , Lipopolysaccharides/metabolism , Lotus/genetics , Lotus/microbiology , Mutation , Nitrogen Fixation/physiology , Phosphorylation , Plant Cells/metabolism , Plant Cells/microbiology , Plant Proteins/metabolism , Plant Root Nodulation/genetics , Receptors, Cell Surface/metabolism , Rhizobium/genetics , Root Nodules, Plant/genetics , Root Nodules, Plant/microbiology , Signal Transduction , Symbiosis/physiology
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