Whole transcriptome analysis of demersal fish eggs reveals complex responses to ocean deoxygenation and acidification.

Ocean acidification and deoxygenation co-occur in marine environments, causing deterioration of marine ecosystems. However, effects of compound stresses on marine organisms and their physiological coping mechanisms are largely unknown. Here, we show how high pCO2 and low dissolved oxygen (DO) cause transcriptomic changes in eggs of a demersal fish (Sillago japonica), which are fully exposed to such stresses in natural environment. Overall gene expression was affected more strongly by low DO than by high pCO2. Enrichment analysis detected significant stress responses such as glycolytic processes in response to low DO. Increased expression of a group of glycolytic genes under low DO conditions is presumably because oxygen depletion disables the electron transfer pathway, complementing ATP production in the glycolytic pathway. Contrary to expectations, apparent mitigation of gene expression changes was dominant under combined stress conditions, and may represent an innate fish adaptive trait for severe environments.

Genetic population structures of common scavenging species near hydrothermal vents in the Okinawa Trough.

Deep-sea mining of hydrothermal deposits off the coast of Japan is currently under consideration, and environmental baseline studies of the area are required to understand possible impacts. The aim of this study is to clarify population structures of dominant benthic megafaunal species near hydrothermal vent fields in the Okinawa Trough, using a population genetics approach. We examined dominant deep-sea scavenging species including eels, several amphipods, and a decapod and performed population genetic analyses based on the mitochondrial cytochrome c oxidase subunit I region. Several sites were sampled within Okinawa Trough to examine intra-population diversity while two other locations 1400-2400 km away were chosen for inter-population comparisons. For synaphobranchid eels Simenchelys parasitica and Synaphobranchus kaupii, our results showed significant intra-population diversity but no inter-population genetic differentiation, suggesting strong genetic connectivity and/or large population sizes. In addition, single nucleotide polymorphism analysis also confirmed strong genetic connectivity for Simenchelys parasitica. Among scavenging amphipods, we detected seven putative species using molecular phylogenetic analysis. We evaluated population structures of the most abundant species of amphipods and a decapod species (Nematocarcinus lanceopes). Our results provide basic information on the genetic population structures of benthic megafaunal species near hydrothermal vent fields, which can be used to select candidate species for future connectivity analysis with high-resolution genetic markers and aid understanding of the potential population impacts of environmental disturbances.

Two new species of Rhinogobius (Gobiiformes: Oxudercidae) from Palawan, Philippines, with their phylogenetic placement.

Two new species of Rhinogobius found in streams on central part of Palawan Island, Philippines are described. The two new species, Rhinogobius estrellae and Rhinogobius tandikan share unique transverse rows of sensory papillae on the cheek with Rhinogobius similis Gill, 1859, but differ from the latter in fin ray counts, arrangement of the scales, etc. The two new species are distinguished from each other by the pectoral-fin ray count, the longitudinal- and predorsal-scale counts, and colouration of the body. Rhinogobius estrellae new species and R. tandikan new species have been found allopatrically in a stream within Malatgao River system flowing into the Sulu Sea and in the Cayulo River flowing into the South China Sea, respectively. The Malatgao River system is the southernmost habitat of the genus Rhinogobius. Rhinogobius similis had been considered as the only member of the most basal lineage of this genus, but our mitochondrial genome analysis suggested that the two new species are additional members of this lineage. They are considered to be relicts of their common ancestor with R. similis, which probably had a wider distribution.

Patterns in diversity and species composition in soft-sediment tidepool fishes across topographical types: Implications for conservation with spatial nuances.

Fish communities inhabiting soft-sediment areas are representative conservation targets for coastal habitats, but how the ecological function of soft-sediment tidepools drives diversity is still unknown. To tackle this issue, the ecological functions of soft-sediment tidepools for fishes according to topographic types (open and closed habitats) on Okinawa-jima Island, located in subtropical Japan, were examined in diversity, species composition, and lifestyle (resident and transient species). Landward tidepools serve as permanent habitat for specialists, whereas seaward tidepools are more important for transient species as temporal habitats, which shaped the inverse trend in α- and ß-diversity between topographic types, depending on the habitat heterogeneity and the biological characteristics of resident and transient species. We propose a strategy for the conservation and management of topographically distinct intertidal habitats, basically as a single set, while also considering the ecological functions with spatial nuances at smaller scales within coastal landscapes.

Reproductive traits of the dwarf gobies Pandaka trimaculata and Pandaka lidwilli in the western Pacific Ocean: histological evidence from one of the smallest fishes in the world.

Gobies are generally small fishes which play important roles in estuarine ecosystems, yet little attention has been paid to their life-history traits in the western Pacific region. In the present study, the reproductive traits of the dwarf gobies Pandaka trimaculata and Pandaka lidwilli were explored by examining their populations in a subtropical estuary on Okinawa-jima Island, Japan, over 15 months. The Okinawan populations of both species shared similar reproductive traits. Pandaka trimaculata and P. lidwilli exhibited early female maturation at minimum sizes of 8.8 and 9.4 mm standard length (SL), respectively, which indicate that populations of the Pandaka species in the subtropical region represent some of the smallest fishes in the world. Nonetheless, they also had high relative body sizes at maturity relative to the attained asymptotic SLs, ranging from 75.8% to 80.4%, which suggests that their populations are vulnerable to negative impacts. Both the species also had prolonged spawning periods, extending from February to November (P. trimaculata) and from January to October (P. lidwilli), indicating that these local populations have a high potential for maintenance and resilience. Their spawning periods, sizes at maturity and fecundities varied among seasons and latitudes, possibly because of low water temperatures affecting the relative allocation of energy to growth and reproduction. Such plasticity of life-history traits in these small fishes indicates that they would be suitable models for understanding the evolution of life-history strategies and monitoring the responses of organisms to climate change.