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1.
Genet Mol Res ; 16(2)2017 May 10.
Article in English | MEDLINE | ID: mdl-28510247

ABSTRACT

Expressed sequence tags (ETSs) are the sources of microsatellite development. In this study, we isolated and characterized microsatellite markers for Odontobutis potamophila by using Illumina RNA-sequencing. We sequenced a large number of ESTs and screened 200 potential microsatellites. Consequently, a total of 56 novel polymorphic microsatellite repeat markers were identified in thirty-two individuals from a wild population area (Jiande, Zhejiang Province, China). The number of alleles per locus varied from two to eight, the observed heterozygosity (HO) ranged from 0.03571 to 0.9375, and the expected heterozygosity (HE) ranged from 0.14326 to 0.81549. The average number of alleles, HO, and HE were 5.0, 0.4467, and 0.5518, respectively. By the calculation, the range of polymorphism information content (PIC) was 0.1177-0.8492. Most of the loci showed moderate or high polymorphism. These newly developed EST-simple sequence repeat (EST-SSR) markers would serve as an efficient tool for analyzing population connectivity and provide sufficient information for genetic diversity research, parentage, and molecular breeding of O. potamophila and other fishes with similar genetic relationship.


Subject(s)
Expressed Sequence Tags , Microsatellite Repeats , Perciformes/genetics , Transcriptome , Alleles , Animals , Genetic Markers , Heterozygote , Polymorphism, Genetic
2.
Genet Mol Res ; 15(1)2016 Feb 05.
Article in English | MEDLINE | ID: mdl-26909949

ABSTRACT

The aim of this study was to explore the expression of PI3K, AKT, and P-AKT, and to investigate the role of PI3K/AKT signaling pathway in thin endometrium. We included 40 women treated in affiliated Shenzhen Nanshan People's Hospital of Guangdong Medical University for endometrial conditions between August 2013 and January 2015, 20 with a normal endometrium, and 20 with thin endometrium. The expression of PI3K, AKT, and P-AKT was evaluated by the immunohistochemical S-P method. The expression of PI3K, AKT, and P-AKT proteins was significantly lower in the thin endometrium group than in the normal endometrium group (P < 0.05). The expression of PI3K and AKT was positively correlated with the expression of P-AKT. The expression of PI3K, AKT, and P-AKT proteins in the thin endometrium decreases during the proliferative phase, and this process could be associated with PI3K/AKT signaling.


Subject(s)
Endometrium/metabolism , Phosphatidylinositol 3-Kinases/genetics , Phosphoproteins/genetics , Proto-Oncogene Proteins c-akt/genetics , Adult , Case-Control Studies , Endometrium/pathology , Estradiol Congeners/blood , Female , Gene Expression Regulation , Humans , Phosphatidylinositol 3-Kinases/blood , Phosphoproteins/blood , Progesterone Congeners/blood , Proto-Oncogene Proteins c-akt/blood , Signal Transduction
3.
Genet Mol Res ; 13(1): 1314-22, 2014 Feb 28.
Article in English | MEDLINE | ID: mdl-24634229

ABSTRACT

XRCC1 (human X-ray repair complementing defective repair in Chinese hamster cell 1) gene is considered a potentially important gene influencing the risk of hepatocellular carcinoma (HCC). Our analyses detected two allelic variants of XRCC1, c.910A>G and c.1686C>G. We aimed to investigate whether these polymorphisms influence the risk of HCC. The association between the XRCC1 polymorphisms and the risk of HCC was analyzed in 719 patients and 662 controls by polymerase chain reaction-restriction fragment length polymorphism. Our data suggested that the genotypes and alleles of c.910A>G and c.1686C>G polymorphisms were statistically associated with the risk of HCC. For c.910A>G, the GG genotype was associated with increased risk of developing HCC compared with the AA wild genotype (OR = 1.95, 95%CI = 1.40-2.70, P < 0.0001). For c.1686C>G, the risk of HCC was significantly higher for the GG genotype compared with the CC wild genotype (OR = 1.89, 95%CI = 1.375-2.599, P < 0.0001). Significant differences in the risk of HCC were also found with other genetic models for these two SNPs. The G allele of both c.910A>G and c.1686C>G may contribute to the risk of HCC (G versus A: OR = 1.40, 95%CI = 1.20-1.64, P < 0.0001 and G versus C: OR = 1.38, 95%CI = 1.19-1.61, P < 0.0001, respectively). Our findings suggest that the c.910A>G and c.1686C>G polymorphisms of XRCC1 are associated with the risk of HCC in the Chinese population.


Subject(s)
Carcinoma, Hepatocellular/genetics , DNA-Binding Proteins/genetics , Liver Neoplasms/genetics , Polymorphism, Single Nucleotide , Adenine/metabolism , Aged , Asian People/genetics , Carcinoma, Hepatocellular/pathology , Case-Control Studies , Cytosine/metabolism , Female , Gene Frequency , Genetic Association Studies , Genetic Predisposition to Disease , Guanine/metabolism , Humans , Liver Neoplasms/pathology , Male , Middle Aged , Risk Factors , X-ray Repair Cross Complementing Protein 1
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