Provenance analyses of silted sediments in Shenzhen Bay: Insights based on rare earth elements and stable isotopes.

Shenzhen Bay (SZB) in southern China is a typical eutrophic area, with internal pollution from its sediments representing an important nutrient source. However, the transport paths and sources of sediments in SZB remain unclear, making it difficult to analyze the nutritional budget and propose effective sediment management strategies. To address this, we linked a sediment fingerprinting technique to a Bayesian mixing model (MixSIAR) and conducted provenance analyses. We collected particle samples from SZB sediment and surrounding areas, including the Shenzhen River (SZR), Pearl River Estuary (PRE), and the northern South China Sea (SCS). Two groups of natural tracers were measured to trace different phases of sediments: (1) C and N parameters for the fates of the organic phase of sediments, and (2) rare earth element (REE) patterns for the provenance of mineral fragments. The results showed that the concentrations of total organic C and total N were 0.89-1.44 % and 0.05-0.13 %, respectively. MixSIAR suggested that fluvial inputs from SZR and PRE contributed 46.6 % and 30.3 % of organic matter, respectively. The organic matter in the PRE mainly originated from sewage and the upper reaches of the Pearl River. The concentration range of REEs in SZB sediments was 153.12-480.09 mg/kg with clear enrichment for light REE. MixSIAR results showed that the mineral fragments mainly originated from the outer bay (SCS and PRE, which contributed 57.2 % and 32.7 %, respectively). These results indicate that organic pollution follows a different path from the inorganic base, which is mainly related to anthropogenic input from land. This study highlights that complex sediment transport processes and pollution intrusions from the Pearl River are the issues that must be considered for eutrophication restoration in SZB.

Detection of linezolid resistance cfr gene among MRSA isolates.

BACKGROUND: Linezolid (Oxazolidinones) is commonly used against a variety of Gram-positive infections, especially methicillin-resistant Staphylococcus aureus (MRSA). The emerging resistance to linezolid curtail the treatment of infections caused by MRSA and other Gram-positive bacteria. Presence of cfr gene plays a crucial role in Linezolid resistance. OBJECTIVE: Present study was aimed to detect cfr gene among clinical MRSA isolates. MATERIALS AND METHODS: The suspected Staphylococcus aureus isolates were processed through Kirby Bauer disc diffusion methods for the confirmation of MRSA strains. Phenotypic Linezolid resistance was determined through broth micro-dilution method. The plasmid and DNA of Linezolid resistant isolates were subjected to molecular characterization for the presence of cfr gene. RESULTS: Among 100 Staphylococcus aureus isolates, 85 of them were confirmed as MRSA isolates. Categorically, 65% MRSA isolates were sensitive to linezolid with MIC lower than 8 µg/ml, whereas, 35% of them were resistant to linezolid having MIC greater than 8 µg/ml. MIC level of 128 µg/ml was observed among 3.5% of the resistant isolates. Similarly, MIC level of 64 µg/ml, 32 µg/ml, 16 µg/ml and 8 µg/ml were noted for 3.5%, 4.7%, 8.2% and 15.3% isolates respectively. Linezolid resistance cfr gene was detected only in 9.4% of the resistant isolates. CONCLUSION: Multi drug resistance among MRSA isolates is keenly attributed to the presence of cfr gene as evident in the present study, and horizontal dissemination of cfr gene among MRSA strains is accredited to cfr-carrying transposons and plasmids.

Oyster Biodeposition Alleviates Sediment Nutrient Overload: A Case Study at Shenzhen Bay, China.

Oysters are ecological engineers, and previous studies have examined their role as competent facilitators of ecological restoration. However, the decisive role of oysters in the aquatic environment is still debatable because oyster biodeposition (OBD) may also increase the nutrients enriched in sediments. In order to better interpret this problem, we sampled sediment cores from representative oyster culture areas and uncultured areas in Shenzhen Bay. The results have shown that the TOC (total organic carbon) and TN (total nitrogen) decreased significantly (p < 0.05) at the surface sediment layer (0-20-cm deep) and the sediment layer (20-40-cm deep) of the oyster site compared with the reference site. The decreased TOC and TN were also observed at 60- to 100-cm sediment depth in the oyster site. This indicated that the OBD significantly impacted the concentration of TOC and TN in the sediment. To confirm the alleviative role of OBD, we conducted stable isotope (δ13C and δ15N) analyses, which further demonstrated the presence of heavier and less lighter forms of organic carbon and nitrogen sediment. The surface sediment layer (0-20 cm) at the oyster site showed 8% more δ13C‰ compared with the control site (p < 0.05), reflecting the reduction in the TOC. In order to reveal the potential microbial mechanisms involved in OBD, we performed a functional analysis using the Geochip5 advanced microarray technology. Regarding carbon metabolism, we observed that genes (encoding pullulanase, glucoamylase, exoglucanase, cellobiase, and xylanase) involved in the degradation of relatively labile C-based molecules (e.g., starch, cellulose, and hemicellulose) were highly represented in an experimental area (p < 0.05). In addition, microbes in the experimental area exhibited a greater capacity for degrading recalcitrant C (e.g., lignin), which involves glyoxal oxidase (glx), manganese peroxidase (mnp), and phenol oxidase. Among the genes controlling nitrogen metabolism, the genes involved in denitrification, assimilation, ammonification, and nitrification were differentially expressed compared with the control area. These results indicated that microbial metabolic roles might have enhanced the C/N-flux speed and reduced the overall nutrient status. We concluded that OBD alleviates sediment nutrient overload under oyster farming from a microbial ecological perspective in a rapidly urbanized coastal area.