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1.
Biochim Biophys Acta Gen Subj ; 1864(7): 129599, 2020 07.
Article in English | MEDLINE | ID: mdl-32173377

ABSTRACT

BACKROUND: Cytosolic glutaredoxin 2 (Grx2c) controls axonal outgrowth and is specifically induced in many cancer cell lines. We thus hypothesized that Grx2c promotes cell motility and invasiveness. METHODS: We characterized the impact of Grx2c expression in cell culture models. We combined stable isotope labeling, phosphopeptide enrichment, and high-accuracy mass spectrometry to characterize the underlying mechanisms. RESULTS: The most prominent associations were found with actin dynamics, cellular adhesion, and receptor-mediated signal transduction, processes that are crucial for cell motility. For instance, collapsin response mediator protein 2, a protein involved in the regulation of cytoskeletal dynamics, is regulated by Grx2c through a redox switch that controls the phosphorylation state of the protein as well. Cell lines expressing Grx2c showed dramatic alterations in morphology. These cells migrated two-fold faster and gained the ability to infiltrate a collagen matrix. CONCLUSIONS: The expression of Grx2c promotes cell migration, and may negatively correlate with cancer-specific survival. GENERAL SIGNIFICANCE: Our results imply critical roles of Grx2c in cytoskeletal dynamics, cell adhesion, and cancer cell invasiveness.


Subject(s)
Glutaredoxins , Neoplasms , Cell Adhesion/physiology , Cell Movement/physiology , Glutaredoxins/chemistry , Humans , Protein Isoforms/metabolism , Signal Transduction
2.
Proc Natl Acad Sci U S A ; 117(1): 741-751, 2020 01 07.
Article in English | MEDLINE | ID: mdl-31871212

ABSTRACT

Seeds preserve a far developed plant embryo in a quiescent state. Seed metabolism relies on stored resources and is reactivated to drive germination when the external conditions are favorable. Since the switchover from quiescence to reactivation provides a remarkable case of a cell physiological transition we investigated the earliest events in energy and redox metabolism of Arabidopsis seeds at imbibition. By developing fluorescent protein biosensing in intact seeds, we observed ATP accumulation and oxygen uptake within minutes, indicating rapid activation of mitochondrial respiration, which coincided with a sharp transition from an oxidizing to a more reducing thiol redox environment in the mitochondrial matrix. To identify individual operational protein thiol switches, we captured the fast release of metabolic quiescence in organello and devised quantitative iodoacetyl tandem mass tag (iodoTMT)-based thiol redox proteomics. The redox state across all Cys peptides was shifted toward reduction from 27.1% down to 13.0% oxidized thiol. A large number of Cys peptides (412) were redox switched, representing central pathways of mitochondrial energy metabolism, including the respiratory chain and each enzymatic step of the tricarboxylic acid (TCA) cycle. Active site Cys peptides of glutathione reductase 2, NADPH-thioredoxin reductase a/b, and thioredoxin-o1 showed the strongest responses. Germination of seeds lacking those redox proteins was associated with markedly enhanced respiration and deregulated TCA cycle dynamics suggesting decreased resource efficiency of energy metabolism. Germination in aged seeds was strongly impaired. We identify a global operation of thiol redox switches that is required for optimal usage of energy stores by the mitochondria to drive efficient germination.


Subject(s)
Arabidopsis/physiology , Citric Acid Cycle/physiology , Germination/physiology , Mitochondria/metabolism , Seeds/metabolism , Adenosine Triphosphate/metabolism , Arabidopsis Proteins/genetics , Arabidopsis Proteins/metabolism , Glutathione Reductase/genetics , Glutathione Reductase/metabolism , Oxidation-Reduction , Oxygen/metabolism , Plants, Genetically Modified , Proteomics/methods , Seeds/cytology , Seeds/growth & development , Thioredoxin h/genetics , Thioredoxin h/metabolism , Thioredoxin-Disulfide Reductase/genetics , Thioredoxin-Disulfide Reductase/metabolism
3.
Oxid Med Cell Longev ; 2018: 4829872, 2018.
Article in English | MEDLINE | ID: mdl-30584462

ABSTRACT

Nucleoredoxin (Nrx) is an oxidoreductase of the thioredoxin family of proteins. It was shown to act as a signal transducer in some pathways; however, so far, no comprehensive analysis of its regulated substrates and functions was available. Here, we used a combination of two different strategies to fill this gap. First, we analyzed the thiol-redox state of the proteome of SH-SY5Y neuroblastoma cells depleted of Nrx compared to control cells using a differential thiol-labeling technique and quantitative mass spectrometry. 171 proteins were identified with an altered redox state; 161 of these were more reduced in the absence of Nrx. This suggests functions of Nrx in the oxidation of protein thiols. Second, we utilized the active site mutant Cys208Ser of Nrx, which stabilizes a mixed disulfide intermediate with its substrates and therefore trapped interacting proteins from the mouse brain (identifying 1710 proteins) and neuronal cell culture extracts (identifying 609 proteins). Profiling of the affected biological processes and molecular functions in cells of neuronal origin suggests numerous functions of Nrx in the redox regulation of metabolic pathways, cellular morphology, and signal transduction. These results characterize Nrx as a cellular oxidase that itself may be oxidized by the formation of disulfide relays with peroxiredoxins.


Subject(s)
Neurons/metabolism , Nuclear Proteins/metabolism , Oxidoreductases/metabolism , Animals , Blotting, Western , Brain/metabolism , Cell Line, Tumor , Electrophoresis, Polyacrylamide Gel , Humans , Mice , Nuclear Proteins/genetics , Oxidation-Reduction , Oxidoreductases/genetics
4.
Front Microbiol ; 9: 935, 2018.
Article in English | MEDLINE | ID: mdl-29867844

ABSTRACT

Burkholderia pseudomallei is a soil-dwelling bacterium able to survive not only under adverse environmental conditions, but also within various hosts which can lead to the disease melioidosis. The capability of B. pseudomallei to adapt to environmental changes is facilitated by the large number of regulatory proteins encoded by its genome. Among them are more than 60 uncharacterized LysR-type transcriptional regulators (LTTRs). Here we analyzed a B. pseudomallei mutant harboring a transposon in the gene BPSL0117 annotated as a LTTR, which we named gvmR (globally acting virulence and metabolism regulator). The gvmR mutant displayed a growth defect in minimal medium and macrophages in comparison with the wild type. Moreover, disruption of gvmR rendered B. pseudomallei avirulent in mice indicating a critical role of GvmR in infection. These defects of the mutant were rescued by ectopic expression of gvmR. To identify genes whose expression is modulated by GvmR, global transcriptome analysis of the B. pseudomallei wild type and gvmR mutant was performed using whole genome tiling microarrays. Transcript levels of 190 genes were upregulated and 141 genes were downregulated in the gvmR mutant relative to the wild type. Among the most downregulated genes in the gvmR mutant were important virulence factor genes (T3SS3, T6SS1, and T6SS2), which could explain the virulence defect of the gvmR mutant. In addition, expression of genes related to amino acid synthesis, glyoxylate shunt, iron-sulfur cluster assembly, and syrbactin metabolism (secondary metabolite) was decreased in the mutant. On the other hand, inactivation of GvmR increased expression of genes involved in pyruvate metabolism, ATP synthesis, malleobactin, and porin genes. Quantitative real-time PCR verified the differential expression of 27 selected genes. In summary, our data show that GvmR acts as an activating and repressing global regulator that is required to coordinate expression of a diverse set of metabolic and virulence genes essential for the survival in the animal host and under nutrient limitation.

5.
Mitochondrion ; 33: 72-83, 2017 Mar.
Article in English | MEDLINE | ID: mdl-27456428

ABSTRACT

Mitochondria are hotspots of cellular redox biochemistry. Respiration as a defining mitochondrial function is made up of a series of electron transfers that are ultimately coupled to maintaining the proton motive force, ATP production and cellular energy supply. The individual reaction steps involved require tight control and flexible regulation to maintain energy and redox balance in the cell under fluctuating demands. Redox regulation by thiol switching has been a long-standing candidate mechanism to support rapid adjustment of mitochondrial protein function at the posttranslational level. Here we review recent advances in our understanding of cysteine thiol switches in the mitochondrial proteome with a focus on their operation in vivo. We assess the conceptual basis for thiol switching in mitochondria and discuss to what extent insights gained from in vitro studies may be valid in vivo, considering thermodynamic, kinetic and structural constraints. We compare functional proteomic approaches that have been used to assess mitochondrial protein thiol switches, including thioredoxin trapping, redox difference gel electrophoresis (redoxDIGE), isotope-coded affinity tag (OxICAT) and iodoacetyl tandem mass tag (iodoTMT) labelling strategies. We discuss conditions that may favour active thiol switching in mitochondrial proteomes in vivo, and appraise recent advances in dissecting their impact using combinations of in vivo redox sensing and quantitative redox proteomics. Finally we focus on four central facets of mitochondrial biology, aging, carbon metabolism, energy coupling and electron transport, exemplifying the current emergence of a mechanistic understanding of mitochondrial regulation by thiol switching in living plants and animals.


Subject(s)
Cysteine/metabolism , Mitochondria/physiology , Mitochondrial Proteins/metabolism , Protein Processing, Post-Translational , Proteome/metabolism , Sulfhydryl Compounds/metabolism , Adaptation, Physiological , Animals , Cell Respiration , Energy Metabolism , Oxidation-Reduction , Plants , Proton-Motive Force
6.
J Proteome Res ; 15(12): 4369-4386, 2016 12 02.
Article in English | MEDLINE | ID: mdl-27762562

ABSTRACT

Internalization of Staphylococcus aureus by nonprofessional phagocytic cells is a major suspected cause of persistent and difficult-to-treat infections, including pneumonia. In this study, we established an infection model with 16HBE14o- human bronchial epithelial cells and demonstrated internalization, escape from phagosomal clearance, and intracellular replication of S. aureus HG001 within the first 4 h postinfection. We used quantitative phosphoproteomics to identify characteristic signaling networks in the host at different infection stages. Although we found only minor changes in protein abundance, the infection was accompanied by highly dynamic alterations in phosphorylation events primarily in proteins that are associated with pathways of cytoskeleton dynamics, cell-cell and cell-matrix contacts, vesicle trafficking, autophagy, and GTPase signaling. Analyses of host protein kinases by kinase-substrate mapping, active regulatory site immunoblotting, and prediction algorithms highlighted known and novel host kinases with putative critical roles in S. aureus infection-accompanied signaling including FAK, PKA, PKC, and CDK. Targeted pharmacological inhibition of these kinases resulted in a significant reduction of intracellular S. aureus cells. The current study constitutes a valuable resource for better understanding the infection-relevant molecular pathomechanisms of airway cells and for developing novel host-centric anti-infective strategies for treating S. aureus infections.


Subject(s)
Proteome/metabolism , Proteomics/methods , Bacterial Proteins/analysis , Bronchi/cytology , Bronchi/microbiology , Cells, Cultured , Epithelial Cells/metabolism , Epithelial Cells/microbiology , Host-Pathogen Interactions , Humans , Infections , Phosphorylation , Staphylococcus aureus/chemistry , Staphylococcus aureus/physiology
7.
In Vivo ; 30(5): 573-9, 2016.
Article in English | MEDLINE | ID: mdl-27566074

ABSTRACT

BACKGROUND/AIM: The high variability of primary cells propagated in vitro led us to study the expression patterns of 11 most commonly accepted and widely used biomarkers specific for prostate cancer (PC) cells in primary cell models. MATERIALS AND METHODS: Primary PC cells from five PC patients were partially subjected to RNA preparation immediately and remaining cells were propagated up to 84 days followed by RNA preparation. Subsequently, biomarker mRNA quantification was performed by quantitative reverse transcription-polymerase chain reaction (RT-PCR) and biomarker transcript concentrations before and after cultivation of primary PC cells were compared. RESULTS: Evaluation of androgen receptor, prostate-specific antigen, acid phosphatase, prostate-specific membrane antigen, fatty acid synthase, cytokeratin types 5/8/19, E-cadherin, epithelial cell adhesion molecule and fibroblast-specific protein 1 demonstrated temporal changes, as well as individual differences in expression, during primary PC cell propagation. CONCLUSION: Experimental design, as well as data evaluation, may need to take under consideration the high variability of biomarker expression in primary PC cells.


Subject(s)
Biomarkers, Tumor/biosynthesis , Prostatic Neoplasms/genetics , RNA, Messenger/biosynthesis , Antigens, CD , Antigens, Surface/biosynthesis , Antigens, Surface/genetics , Biomarkers, Tumor/genetics , Cadherins/biosynthesis , Cadherins/genetics , Epithelial Cell Adhesion Molecule/biosynthesis , Epithelial Cell Adhesion Molecule/genetics , Gene Expression Regulation, Neoplastic , Glutamate Carboxypeptidase II/biosynthesis , Glutamate Carboxypeptidase II/genetics , Humans , Male , Primary Cell Culture , Prostate-Specific Antigen/biosynthesis , Prostate-Specific Antigen/genetics , Prostatic Neoplasms/pathology , RNA, Messenger/genetics , Receptors, Androgen/biosynthesis , Receptors, Androgen/genetics
8.
Proteomics Clin Appl ; 10(9-10): 994-1010, 2016 10.
Article in English | MEDLINE | ID: mdl-27440122

ABSTRACT

Protein phosphorylation catalyzed by protein kinases acts as a reversible molecular switch in signal transduction, providing a mechanism for the control of protein function in cellular processes. During microbial infection, cellular signaling essentially contributes to immune control to restrict the dissemination of invading pathogens within the host organism. However, pathogenic microbes compete for the control of host signaling to create a beneficial environment for successful invasion and infection. Although efforts to achieve a better understanding of the host-pathogen interaction and its molecular consequences have been made, there is urgent need for a comprehensive characterization of infection-related host signaling processes. System-wide and hypothesis-free analysis of phosphorylation-mediated host signaling during host-microbe interactions by mass spectrometry (MS)-based methods is not only promising in view of a greater understanding of the pathogenesis of the infection but also may result in the identification of novel host targets for preventive or therapeutic intervention. Here, we review state-of-the-art MS-based techniques for the system-wide identification and quantitation of protein phosphorylation and compare them to array-based phosphoprotein analyses. We also provide an overview of how phosphoproteomics and kinomics have contributed to our understanding of protein kinase-driven phosphorylation networks that operate during host-microbe interactions.


Subject(s)
Bacterial Infections/metabolism , Bacterial Infections/pathology , Protein Kinases/metabolism , Proteomics/methods , Signal Transduction , Animals , Humans , Mass Spectrometry , Phosphoproteins/metabolism
9.
Front Cell Dev Biol ; 4: 21, 2016.
Article in English | MEDLINE | ID: mdl-27066479

ABSTRACT

Macrophages represent the primary human host response to pathogen infection and link the immediate defense to the adaptive immune system. Mature tissue macrophages convert from circulating monocyte precursor cells by terminal differentiation in a process that is not fully understood. Here, we analyzed the protein kinases of the human monocytic cell line THP-1 before and after induction of macrophage differentiation by using kinomics and phosphoproteomics. When comparing the macrophage-like state with the monocytic precursor, 50% of the kinome was altered in expression and even 71% of covered kinase phosphorylation sites were affected. Kinome rearrangements are for example characterized by a shift of overrepresented cyclin-dependent kinases associated with cell cycle control in monocytes to calmodulin-dependent kinases and kinases involved in proinflammatory signaling. Eventually, we show that monocyte-to-macrophage differentiation is associated with major rewiring of mitogen-activated protein kinase signaling networks and demonstrate that protein kinase MAP3K7 (TAK1) acts as the key signaling hub in bacterial killing, chemokine production and differentiation. Our study proves the fundamental role of protein kinases and cellular signaling as major drivers of macrophage differentiation and function. The finding that MAP3K7 is central to macrophage function suggests MAP3K7 and its networking partners as promising targets in host-directed therapy for macrophage-associated disease.

10.
PLoS One ; 10(3): e0122089, 2015.
Article in English | MEDLINE | ID: mdl-25816343

ABSTRACT

Responsiveness of cells to alpha-toxin (Hla) from Staphylococcus aureus appears to occur in a cell-type dependent manner. Here, we compare two human bronchial epithelial cell lines, i.e. Hla-susceptible 16HBE14o- and Hla-resistant S9 cells, by a quantitative multi-omics strategy for a better understanding of Hla-induced cellular programs. Phosphoproteomics revealed a substantial impact on phosphorylation-dependent signaling in both cell models and highlights alterations in signaling pathways associated with cell-cell and cell-matrix contacts as well as the actin cytoskeleton as key features of early rHla-induced effects. Along comparable changes in down-stream activity of major protein kinases significant differences between both models were found upon rHla-treatment including activation of the epidermal growth factor receptor EGFR and mitogen-activated protein kinases MAPK1/3 signaling in S9 and repression in 16HBE14o- cells. System-wide transcript and protein expression profiling indicate induction of an immediate early response in either model. In addition, EGFR and MAPK1/3-mediated changes in gene expression suggest cellular recovery and survival in S9 cells but cell death in 16HBE14o- cells. Strikingly, inhibition of the EGFR sensitized S9 cells to Hla indicating that the cellular capacity of activation of the EGFR is a major protective determinant against Hla-mediated cytotoxic effects.


Subject(s)
Bacterial Toxins/toxicity , Hemolysin Proteins/toxicity , MAP Kinase Signaling System , Proteome/metabolism , Respiratory Mucosa/metabolism , Bacterial Toxins/immunology , Cell Line , ErbB Receptors/genetics , ErbB Receptors/metabolism , Hemolysin Proteins/immunology , Humans , Organ Specificity , Proteome/genetics , Respiratory Mucosa/drug effects , Respiratory Mucosa/immunology
11.
PLoS One ; 9(4): e94818, 2014.
Article in English | MEDLINE | ID: mdl-24733556

ABSTRACT

Staphylococcus aureus alpha-toxin (Hla) is a potent pore-forming cytotoxin that plays an important role in the pathogenesis of S. aureus infections, including pneumonia. The impact of Hla on the dynamics of the metabolome in eukaryotic host cells has not been investigated comprehensively. Using 1H-NMR, GC-MS and HPLC-MS, we quantified the concentrations of 51 intracellular metabolites and assessed alterations in the amount of 25 extracellular metabolites in the two human bronchial epithelial cell lines S9 and 16HBE14o- under standard culture conditions and after treatment with sub-lethal amounts (2 µg/ml) of recombinant Hla (rHla) in a time-dependent manner. Treatment of cells with rHla caused substantial decreases in the concentrations of intracellular metabolites from different metabolic pathways in both cell lines, including ATP and amino acids. Concomitant increases in the extracellular concentrations were detected for various intracellular compounds, including nucleotides, glutathione disulfide and NAD+. Our results indicate that rHla has a major impact on the metabolome of eukaryotic cells as a consequence of direct rHla-mediated alterations in plasma membrane permeability or indirect effects mediated by cellular signalling. However, cell-specific changes also were observed. Glucose consumption and lactate production rates suggest that the glycolytic activity of S9 cells, but not of 16HBE14o- cells, is increased in response to rHla. This could contribute to the observed higher level of resistance of S9 cells against rHla-induced membrane damage.


Subject(s)
Bacterial Toxins/toxicity , Bronchi/cytology , Epithelial Cells/cytology , Epithelial Cells/metabolism , Hemolysin Proteins/toxicity , Cell Line, Transformed , Cell Survival/drug effects , Citric Acid Cycle/drug effects , Epithelial Cells/drug effects , Extracellular Space/drug effects , Extracellular Space/metabolism , Glucose/metabolism , Glutamine/metabolism , Glycolysis/drug effects , Humans , Intracellular Space/drug effects , Intracellular Space/metabolism , Lactates/metabolism , Metabolomics , Nucleotides/metabolism , Principal Component Analysis , Recombinant Proteins/toxicity
12.
Mol Vis ; 19: 1321-31, 2013.
Article in English | MEDLINE | ID: mdl-23805039

ABSTRACT

PURPOSE: For an aqueous shunt draining from the anterior chamber into the choroidal space, fibroblasts from the choroidea and/or the sclera are most likely responsible for a fibrotic response around the outflow region of such a shunt. The prevention of fibrosis should extend the operating life of the shunt. A detailed characterization of fibroblasts derived from choroidea and sclera should provide information about whether a fibrosis reaction can be inhibited by cell type-specific agents. METHODS: We generated mRNA profiles of fibroblasts from the choroidea, sclera, and Tenon's space by gene array hybridization to provide a basis on which to search for potential pharmacological targets for fibrosis prevention. Hybridization data were analyzed by the Rosetta Resolver system and Limma to obtain mRNA profiles of the three fibroblast types. RESULTS: The three fibroblast types investigated shared fibroblast-specific gene expression patterns concerning extracellular matrix proteins as collagens and fibronectin, but also showed distinct mRNA patterns. CONCLUSIONS: Individual mRNA species overexpressed in one of the fibroblast types might serve as markers for the identification of the fibroblast type in histological analyses. Future in-depth analyses of the gene expression patterns might help identify pharmacological targets for fibrosis prevention.


Subject(s)
Eye, Artificial/adverse effects , Eye/pathology , Fibroblasts/metabolism , Gene Expression Profiling , Glaucoma Drainage Implants/adverse effects , Collagen Type I/genetics , Collagen Type I/metabolism , Connective Tissue/metabolism , Extracellular Matrix/genetics , Fibroblasts/pathology , Fibrosis , Gene Expression Regulation , Humans , Oligonucleotide Array Sequence Analysis , Organ Specificity/genetics , Polymerase Chain Reaction , Principal Component Analysis , RNA, Messenger/genetics , RNA, Messenger/metabolism
13.
Int J Med Microbiol ; 303(3): 114-23, 2013 Apr.
Article in English | MEDLINE | ID: mdl-23517692

ABSTRACT

Bacillithiol (Cys-GlcN-malate, BSH) serves as a major low molecular weight thiol in low GC Gram-positive bacteria including Bacillus species and a variety of Staphylococcus aureus strains. These bacteria do not produce glutathione (GSH). In this study, HPLC analyses were used to determine BSH levels in different S. aureus strains. Furthermore, the role of BSH in the resistance against oxidants and antibiotics and its function in virulence was investigated. We and others (Newton, G.L., Fahey, R.C., Rawat, M., 2012. Microbiology 158, 1117-1126) found that BSH is not produced by members of the S. aureus NCTC8325 lineage, such as strains 8325-4 and SH1000. Using bioinformatics we show that the BSH-biosynthetic gene bshC is disrupted by an 8-bp duplication in S. aureus NCTC8325. The functional bshC-gene from BSH-producing S. aureus Newman (NWMN_1087) was expressed in S. aureus 8325-4 to reconstitute BSH-synthesis. Comparison of the BSH-producing and BSH-minus strains revealed higher resistance of the BSH-producing strain against the antibiotic fosfomycin and the oxidant hypochlorite but not against hydrogen peroxide or diamide. In addition, a higher bacterial load of the BSH-producing strain was detected in human upper-airway epithelial cells and murine macrophages. This indicates a potential role of BSH in protection of S. aureus during infection.


Subject(s)
Cysteine/analogs & derivatives , Glucosamine/analogs & derivatives , Staphylococcus aureus/metabolism , Staphylococcus aureus/pathogenicity , Virulence Factors/biosynthesis , Animals , Anti-Bacterial Agents/pharmacology , Antioxidants , Bacterial Load , Cell Line , Chromatography, High Pressure Liquid , Cysteine/biosynthesis , Cysteine/genetics , Diamide/pharmacology , Drug Resistance, Bacterial , Epithelial Cells/microbiology , Fosfomycin/pharmacology , Gene Expression , Glucosamine/biosynthesis , Glucosamine/genetics , Humans , Hydrogen Peroxide/pharmacology , Hypochlorous Acid/pharmacology , Macrophages/microbiology , Mice , Oxidants/pharmacology , Staphylococcus aureus/chemistry , Staphylococcus aureus/genetics , Virulence Factors/genetics
14.
Int J Cardiol ; 168(3): 2100-8, 2013 Oct 03.
Article in English | MEDLINE | ID: mdl-23414741

ABSTRACT

BACKGROUND: Atrial fibrillation (AF) is characterized by electrical and structural remodeling of the atria with atrial fibrosis being one hallmark. Angiotensin II (AngII) is a major contributing factor and blockage of its type I receptor (AT1R) prevents remodeling to some extent. Here we explored the effects of the AT1R antagonist irbesartan on global gene expression and profibrotic signaling pathways after induction of rapid atrial pacing (RAP) in vivo in pigs. METHODS AND RESULTS: Microarray-based RNA profiling was used to screen left atrial (LA) tissue specimens for differences in atrial gene expression in a model of acute RAP. RAP caused an overall expression profile that reflected AngII-induced ROS production, tissue remodeling, and energy depletion. Of special note, the mRNA levels of EDN1, SGK1, and CTGF encoding pro-endothelin, stress- and glucocorticoid activated kinase-1, and of connective tissue growth factor were identified to be significantly increased after 7h of rapid pacing. These specific expression changes were additionally validated by RT-qPCR or immunoblot analyses in LA, RA, and partly in LV samples. All RAP-induced differential gene expression patterns were partially attenuated in the presence of irbesartan. Similar results were obtained after RAP of HL-1 cardiomyocytes in vitro. Furthermore, exogenously added endothelin-1 (ET1) induced CTGF expression concomitant to the transcriptional activation of SGK1 in HL-1 cells. CONCLUSIONS: RAP provokes substantial changes in atrial and ventricular myocardial gene expression that could be partly reversed by irbesartan. ET1 contributes to AF-dependent atrial fibrosis by synergistic activity with AngII to stimulate SGK1 expression and enhance phosphorylation of the SGK1 protein which, in turn, induces CTGF. The latter has been consistently associated with tissue fibrosis. These findings suggest ETR antagonists as being beneficial in AF treatment.


Subject(s)
Atrial Fibrillation/genetics , Biphenyl Compounds/pharmacology , Connective Tissue Growth Factor/genetics , Gene Expression Profiling/methods , Gene Expression Regulation/drug effects , Heart Atria/metabolism , RNA, Messenger/genetics , Tetrazoles/pharmacology , Angiotensin II , Angiotensin II Type 1 Receptor Blockers/pharmacology , Animals , Atrial Fibrillation/drug therapy , Atrial Fibrillation/physiopathology , Blotting, Western , Cell Line , Connective Tissue Growth Factor/biosynthesis , Disease Models, Animal , Heart Atria/drug effects , Heart Atria/pathology , Heart Rate , Irbesartan , Mice , Microarray Analysis , Myocytes, Cardiac/metabolism , Myocytes, Cardiac/pathology , Reverse Transcriptase Polymerase Chain Reaction , Swine
15.
PLoS One ; 7(4): e34907, 2012.
Article in English | MEDLINE | ID: mdl-22529955

ABSTRACT

Parietal epithelial cells (PECs) are crucially involved in the pathogenesis of rapidly progressive glomerulonephritis (RPGN) as well as in focal and segmental glomerulosclerosis (FSGS). In this study, transgenic mouse lines were used to isolate pure, genetically tagged primary cultures of PECs or podocytes using FACsorting. By this approach, the morphology of primary glomerular epithelial cells in culture could be resolved: Primary podocytes formed either large cells with intracytoplasmatic extensions or smaller spindle shaped cells, depending on specific culture conditions. Primary PECs were small and exhibited a spindle-shaped or polygonal morphology. In the very early phases of primary culture, rapid changes in gene expression (e.g. of WT-1 and Pax-2) were observed. However, after prolonged culture primary PECs and podocytes still segregated clearly in a transcriptome analysis--demonstrating that the origin of primary cell cultures is important. Of the classical markers, synaptopodin and podoplanin expression were differentially regulated the most in primary PEC and podocyte cultures. However, no expression of any endogenous gene allowed to differentiate between the two cell types in culture. Finally, we show that the transcription factor WT1 is also expressed by PECs. In summary, genetic tagging of PECs and podocytes is a novel and necessary tool to derive pure primary cultures with proven origin. These cultures will be a powerful tool for the emerging field of parietal epithelial cell biology.


Subject(s)
Podocytes/cytology , Podocytes/metabolism , Animals , Cell Lineage , Cluster Analysis , Female , Gene Expression Profiling , Gene Order , Kidney Glomerulus/cytology , Kidney Glomerulus/growth & development , Kidney Glomerulus/metabolism , Mice , Mice, Transgenic , PAX2 Transcription Factor/genetics , PAX2 Transcription Factor/metabolism , Primary Cell Culture , Transcriptome , WT1 Proteins/genetics , WT1 Proteins/metabolism
16.
Proteomics ; 11(14): 2851-66, 2011 Jul.
Article in English | MEDLINE | ID: mdl-21674797

ABSTRACT

The oxidative stress response of Bacillus licheniformis after treatment with hydrogen peroxide was investigated at the transcriptome, proteome and metabolome levels. In this comprehensive study, 84 proteins and 467 transcripts were found to be up or downregulated in response to the stressor. Among the upregulated genes were many that are known to have important functions in the oxidative stress response of other organisms, such as catalase, alkylhydroperoxide reductase or the thioredoxin system. Many of these genes could be grouped into putative regulons by genomic mining. The occurrence of oxidative damage to proteins was analyzed by a 2-DE-based approach. In addition, we report the induction of genes with hitherto unknown functions, which may be important for the specific oxidative stress response of B. licheniformis. The genes BLi04114 and BLi04115, that are located adjacent to the catalase gene, were massively induced during peroxide stress. Furthermore, the genes BLi04207 and BLi04208, which encode proteins homologous to glyoxylate cycle enzymes, were also induced by peroxide. Metabolomic analyses support the induction of the glyoxylate cycle during oxidative stress in B. licheniformis.


Subject(s)
Bacillus/drug effects , Bacillus/physiology , Hydrogen Peroxide/pharmacology , Oxidants/pharmacology , Oxidative Stress/drug effects , Bacillus/chemistry , Bacillus/genetics , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Cluster Analysis , Electrophoresis, Gel, Two-Dimensional/methods , Gene Expression Profiling , Gene Expression Regulation , Iron/metabolism , Metabolome , Microarray Analysis , Molecular Sequence Data , Oxidation-Reduction , Proteome/analysis , Regulon
17.
Proteomics ; 8(13): 2676-90, 2008 Jul.
Article in English | MEDLINE | ID: mdl-18601268

ABSTRACT

Thiol-disulfide oxidoreductases of the thioredoxin superfamily are crucial for maintaining the thiol redox state in living organisms. For the bacterium Bacillus subtilis thioredoxin A (TrxA) was described as the product of an essential gene indicating a key role during growth. By means of mRNA profiling Smits et al. (J. Bacteriol. 2005, 187, 3921-3930) suggested a critical function for TrxA in sulfur utilization during stationary phase. We extended the analysis of TrxA to exponential growth and characterized a trxA conditional mutant by proteome analysis complemented by transcriptomics. After TrxA-depletion, the growth rate was dramatically decreased. The cells responded at mRNA and protein level by the increased expression of genes involved in the utilization of sulfur, which represents the most obvious response as visualized by gel-based proteomics. Furthermore, several genes of the antioxidant response were found at higher expression levels after TrxA-depletion. When sulfate was replaced by thiosulfate or methionine as sulfur source, the growth inhibition was abolished. In the presence of thiosulfate but in the absence of TrxA, the induction of the sulfur limitation response and the oxidative stress response was not observed. Our results show that the global change of gene expression is primarily caused by the interruption of the sulfate utilization after TrxA depletion. Thus, its function in sulfate assimilation renders TrxA an essential protein in growing B. subtilis cells.


Subject(s)
Bacillus subtilis/physiology , Bacterial Proteins/physiology , Proteomics/methods , Thioredoxins/metabolism , Transcription, Genetic , Bacillus subtilis/metabolism , Bacterial Proteins/genetics , Gene Expression Regulation, Bacterial , Thioredoxins/genetics
18.
J Biol Chem ; 282(36): 25981-5, 2007 Sep 07.
Article in English | MEDLINE | ID: mdl-17611193

ABSTRACT

S-Thiolation is crucial for protection and regulation of thiol-containing proteins during oxidative stress and is frequently achieved by the formation of mixed disulfides with glutathione. However, many Gram-positive bacteria including Bacillus subtilis lack the low molecular weight (LMW) thiol glutathione. Here we provide evidence that S-thiolation by the LMW thiol cysteine represents a general mechanism in B. subtilis. In vivo labeling of proteins with [(35)S]cysteine and nonreducing two-dimensional PAGE analyses revealed that a large subset of proteins previously identified as having redox-sensitive thiols are modified by cysteine in response to treatment with the thiol-specific oxidant diamide. By means of multidimensional shotgun proteomics, the sites of S-cysteinylation for six proteins could be identified, three of which are known to be S-glutathionylated in other organisms.


Subject(s)
Bacillus subtilis/metabolism , Bacterial Proteins/metabolism , Cysteine/metabolism , Oxidative Stress/physiology , Protein Processing, Post-Translational/physiology , Bacterial Proteins/analysis , Cysteine/analysis , Diamide/analysis , Diamide/metabolism , Electrophoresis, Gel, Two-Dimensional , Glutathione/deficiency , Glutathione/metabolism
19.
Shock ; 28(5): 564-9, 2007 Nov.
Article in English | MEDLINE | ID: mdl-17589384

ABSTRACT

One of the clinical characteristics associated with septic shock is heart failure. Several lines of evidence indicate that functional consequences of heart failure in septic shock are linked to the activated NO-cyclic guanosine monophosphate (NO-cGMP) pathway. We have previously shown that the high-affinity cGMP export transporter, multidrug resistance protein 5 (MRP5), is expressed in the heart, which modulates intracellular concentrations and, hence, the effects of cGMP. Thus, modified expression of cardiac MRP5 in septic shock can alter cGMP concentrations and contribute to the development of heart failure. We therefore investigated MRP5 expression in the heart using two established murine models of septic shock (intraperitoneal LPS injection and surgical implantation of a stent into the ascending colon, resulting in a multibacterial peritonitis [CASP, colon ascendens stent peritonitis] in C57BL/6N mice, respectively; n = 38). Cardiac MRP5 was assessed by quantitative polymerase chain reaction and immunofluorescence. The protein was localized in the endothelial wall, smooth muscle, and cardiac myocytes. MRP5 mRNA expression was significantly reduced compared with controls both in the LPS (31.9 +/- 16.8 x 10(-4) vs. 54.1 +/- 14.8 x 10(-4), P = 0.025) and CASP model (18.3 +/- 9.4 x 10(-4) vs. 42.8 +/- 12.1 x 10(-4), P = 0.009; MRP5/glyceraldehyde 3-phosphate dehydrogenase copy numbers, respectively). In parallel, IL-6 plasma levels were significantly increased in both models. Incubation of cultured murine cardiomyocytes (HL1) with 5 ng/mL IL-6 resulted in decreased expression of MRP5 (54% of control), as did incubation of the cells with serum from septic mice (LPS serum, 22% of control; CASP serum, 11% of control). In conclusion, cardiac expression of the cGMP export transporter MRP5 is decreased in two murine models of septic shock, most likely by a transcriptional mechanism. Reduced cGMP export as a consequence of decreased MRP5 expression can attenuate heart failure in sepsis.


Subject(s)
Cyclic GMP/metabolism , Gene Expression Regulation , Heart Failure/metabolism , Multidrug Resistance-Associated Proteins/biosynthesis , Myocardium/metabolism , Shock, Septic/metabolism , Animals , Cells, Cultured , Colon , Disease Models, Animal , Endothelium/metabolism , Endothelium/pathology , Female , Gene Expression Regulation/drug effects , Glyceraldehyde-3-Phosphate Dehydrogenases/metabolism , Heart Failure/chemically induced , Heart Failure/pathology , Interleukin-6/blood , Interleukin-6/pharmacology , Lipopolysaccharides/toxicity , Mice , Myocardium/pathology , Myocytes, Cardiac/metabolism , Myocytes, Cardiac/pathology , Myocytes, Smooth Muscle/metabolism , Myocytes, Smooth Muscle/pathology , Nitric Oxide/metabolism , Peritonitis/metabolism , Peritonitis/pathology , Polymerase Chain Reaction , RNA, Messenger , Shock, Septic/chemically induced , Shock, Septic/pathology , Stents
20.
Mol Microbiol ; 58(2): 409-25, 2005 Oct.
Article in English | MEDLINE | ID: mdl-16194229

ABSTRACT

Oxidatively modified thiol groups of cysteine residues are known to modulate the activity of a growing number of proteins. In this study, we developed a fluorescence-based thiol modification assay and combined it with two-dimensional gel electrophoresis and mass spectrometry to monitor the in vivo thiol state of cytoplasmic proteins. For the Gram-positive model organism Bacillus subtilis our results show that protein thiols of growing cells are mainly present in the reduced state. Only a few proteins were found to be thiol-modified, e.g. enzymes that include oxidized thiols in their catalytic cycle. To detect proteins that are particularly sensitive to oxidative stress we exposed growing B. subtilis cells to diamide, hydrogen peroxide or to the superoxide generating agent paraquat. Diamide mediated a significant increase of oxidized thiols in a variety of metabolic enzymes, whereas treatment with paraquat affected only a few proteins. Exposure to hydrogen peroxide forced the oxidation especially of proteins with active site cysteines, e.g. of cysteine-based peroxidases and glutamine amidotransferase-like proteins. Moreover, high levels of hydrogen peroxide were observed to influence the isoelectric point of proteins of this group indicating the generation of irreversibly oxidated thiols. From the overlapping set of oxidatively modified proteins, also enzymes necessary for methionine biosynthesis were identified, e.g. cobalamin-independent methionine synthase MetE. Growth experiments revealed a methionine limitation after diamide and hydrogen peroxide stress, which suggests a thiol-oxidation-dependent inactivation of MetE. Finally, evidence is presented that the antibiotic nitrofurantoin mediates the formation of oxidized thiols in B. subtilis.


Subject(s)
Bacillus subtilis/chemistry , Bacterial Proteins/chemistry , Fluorescent Dyes/chemistry , Sulfhydryl Compounds/chemistry , Bacillus subtilis/drug effects , Bacterial Proteins/metabolism , Boron Compounds/chemistry , Boron Compounds/metabolism , Diamide/pharmacology , Electrophoresis, Gel, Two-Dimensional/methods , Fluorescent Dyes/metabolism , Herbicides/pharmacology , Hydrogen Peroxide/pharmacology , Methionine/chemistry , Methionine/metabolism , Oxidants/pharmacology , Oxidation-Reduction , Oxidative Stress , Paraquat/pharmacology , Proteome/analysis , Sulfhydryl Reagents/pharmacology
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