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1.
BJS Open ; 5(4)2021 07 06.
Article in English | MEDLINE | ID: mdl-34355240

ABSTRACT

BACKGROUND: Hepatectomy with vascular resection (VR) for perihilar cholangiocarcinoma (PHCC) is a challenging procedure. However, only a few reports on this procedure have been published and its clinical significance has not been fully evaluated. METHODS: Patients undergoing surgical resection for PHCC from 2002-2017 were studied. The surgical outcomes of VR and non-VR groups were compared. RESULTS: Some 238 patients were included. VR was performed in 85 patients. The resected vessels were hepatic artery alone (31 patients), portal vein alone (37 patients) or both (17 patients). The morbidity rates were almost the same in the VR (49.4 per cent) and non-VR (43.8 per cent) groups (P = 0.404). The mortality rates of VR (3.5 per cent) and non-VR (3.3 per cent) were also comparable (P > 0.999). The median survival time (MST) was 45 months in the non-VR group and 36 months in VR group (P = 0.124). Among patients in whom tumour involvement was suspected on preoperative imaging and whose carbohydrate antigen 19-9 (CA19-9) value was 37 U/ml or less, MST in the VR group was significantly longer than that in the non-VR group (50 versus 34 months, P = 0.017). In contrast, when the CA19-9 value was greater than 37 U/ml, MST of the VR and non-VR groups was comparable (28 versus 29 months, P = 0.520). CONCLUSION: Hepatectomy with VR for PHCC can be performed in a highly specialized hepatobiliary centre with equivalent short- and long-term outcomes to hepatectomy without VR.


Subject(s)
Bile Duct Neoplasms , Cholangiocarcinoma , Klatskin Tumor , Bile Duct Neoplasms/surgery , Bile Ducts, Intrahepatic , Cholangiocarcinoma/surgery , Hepatectomy , Humans , Klatskin Tumor/surgery
2.
BJS Open ; 5(1)2021 01 08.
Article in English | MEDLINE | ID: mdl-33609394

ABSTRACT

BACKGROUND: Hepatectomy with extrahepatic bile duct resection is associated with a high risk of posthepatectomy liver failure (PHLF). However, the utility of the remnant liver volume (RLV) in cholangiocarcinoma has not been studied intensively. METHODS: Patients who underwent major hepatectomy with extrahepatic bile duct resection between 2002 and 2018 were reviewed. The RLV was divided by body surface area (BSA) to normalize individual physical differences. Risk factors for clinically relevant PHLF were evaluated with special reference to the RLV/BSA. RESULTS: A total of 289 patients were included. The optimal cut-off value for RLV/BSA was determined to be 300 ml/m2. Thirty-two patients (11.1 per cent) developed PHLF. PHLF was more frequent in patients with an RLV/BSA below 300 ml/m2 than in those with a value of 300 ml/m2 or greater: 19 of 87 (22 per cent) versus 13 of 202 (6.4 per cent) (P < 0.001). In multivariable analysis, RLV/BSA below 300 ml/m2 (P = 0.013), future liver remnant plasma clearance rate of indocyanine green less than 0.075 (P = 0.031), and serum albumin level below 3.5 g/dl (P = 0.015) were identified as independent risk factors for PHLF. Based on these risk factors, patients were classified into three subgroups with low (no factors), moderate (1-2 factors), and high (3 factors) risk of PHLF, with PHLF rates of 1.8, 14.8 and 63 per cent respectively (P < 0.001). CONCLUSION: An RLV/BSA of 300 ml/m2 is a simple predictor of PHLF in patients undergoing hepatectomy with extrahepatic bile duct resection.


Subject(s)
Bile Duct Neoplasms/surgery , Cholangiocarcinoma/surgery , Hepatectomy/adverse effects , Liver Failure/etiology , Postoperative Complications/etiology , Adult , Aged , Aged, 80 and over , Bile Ducts, Extrahepatic/surgery , Coloring Agents/pharmacokinetics , Female , Hepatectomy/methods , Hepatectomy/mortality , Humans , Indocyanine Green/pharmacokinetics , Liver Failure/blood , Liver Failure/physiopathology , Logistic Models , Male , Middle Aged , Postoperative Complications/blood , Postoperative Period , Predictive Value of Tests , ROC Curve , Retrospective Studies , Risk Factors , Serum Albumin/analysis
3.
Br J Surg ; 106(12): 1649-1656, 2019 11.
Article in English | MEDLINE | ID: mdl-31626342

ABSTRACT

BACKGROUND: The length of tumour-vein contact between the portal-superior mesenteric vein (PV/SMV) and pancreatic head cancer, and its relationship to prognosis in patients undergoing pancreatic surgery, remains controversial. METHODS: Patients diagnosed with pancreatic head cancer who were eligible for pancreatoduodenectomy between October 2002 and December 2016 were analysed. The PV/SMV contact was assessed retrospectively on CT. Using the minimum P value approach based on overall survival after surgery, the optimal cut-off value for tumour-vein contact length was identified. RESULTS: Among 491 patients included, 462 underwent pancreatoduodenectomy for pancreatic head cancer. PV/SMV contact with the tumour was detected on preoperative CT in 248 patients (53·7 per cent). Overall survival of patients with PV/SMV contact exceeding 20 mm was significantly worse than that of patients with a contact length of 20 mm or less (median survival time (MST) 23·3 versus 39·3 months; P = 0·012). Multivariable analysis identified PV/SMV contact longer than 20 mm as an independent predictor of poor survival, whereas PV/SMV contact greater than 180° was not a predictive factor. Among patients with a PV/SMV contact length exceeding 20 mm on pretreatment CT, those receiving neoadjuvant therapy had significantly better overall survival than patients who had upfront surgery (MST not reached versus 21·6 months; P = 0·002). CONCLUSION: The length of PV/SMV contact predicts survival, and may be used to suggest a role for neoadjuvant therapy to improve prognosis.


ANTECEDENTES: El valor pronóstico de la longitud del contacto del tumor de la cabeza pancreática con las venas porta y mesentérica superior (portal-superior mesenteric vein, PV/SMV) en los pacientes sometidos a cirugía pancreática sigue siendo un tema controvertido. MÉTODOS: Se analizaron los pacientes diagnosticados de un cáncer de la cabeza pancreática a los que se realizó una duodenopancreatectomía cefálica entre octubre de 2002 y diciembre de 2016. El contacto tumoral con la PV/SMV se evaluó de forma retrospectiva mediante tomografía computarizada (TC). Se identificó el valor de corte óptimo para la longitud del contacto tumoral con la PV/SMV, utilizando el valor mínimo de la P basado en la supervivencia global (overall survival, OS) después de la cirugía. RESULTADOS: De 491 pacientes incluidos, en 462 pacientes se realizó una duodenopancreatectomía cefálica por cáncer de la cabeza de páncreas. En la TC preoperatoria, se detectó contacto tumoral con la PV/SMV en 248 (53,7%) pacientes. La OS de los pacientes en los que el contacto del tumor con la PV/SMV fue > 20 mm fue significativamente peor que en aquellos cuyo contacto fue ≤ 20 mm (mediana de supervivencia (median survival time, MST) 23,3 versus 39,3 meses; P = 0,012). En un análisis multivariado se identificó el contacto tumoral-PV/SMV > 20 mm como un factor independiente predictor de mala supervivencia, pero el contacto tumor-PV/SMV > 180° no fue un factor pronóstico. En los pacientes en los que el contacto tumor-PV/SMV fue > 20 mm en el TC preoperatorio, la OS en aquellos que recibieron tratamiento neoadyuvante fue significativamente mejor en comparación con los pacientes tratados directamente con cirugía (MST, no alcanzada versus 21,6 meses, P = 0,002). Conclusión La longitud del contacto tumoral con la PV/SMV predice la supervivencia, por lo cual dicha longitud podría jugar un papel en la indicación de tratamiento neoadyuvante para mejorar el pronóstico.


Subject(s)
Mesenteric Veins/pathology , Pancreatic Neoplasms/pathology , Pancreatic Neoplasms/surgery , Portal Vein/pathology , Aged , Female , Humans , Male , Mesenteric Veins/diagnostic imaging , Middle Aged , Neoadjuvant Therapy , Neoplasm Invasiveness , Pancreatic Neoplasms/diagnostic imaging , Pancreaticoduodenectomy , Portal Vein/diagnostic imaging , Prognosis , Retrospective Studies , Survival Analysis , Tomography, X-Ray Computed
4.
Int J Oral Maxillofac Surg ; 31(3): 267-72, 2002 Jun.
Article in English | MEDLINE | ID: mdl-12190132

ABSTRACT

The purpose of this study was to investigate the selection of resection techniques for primary lesions of advanced tongue carcinoma based on the effectiveness of our current preoperative therapy. Forty-three patients with advanced but potentially resectable squamous cell carcinoma of the tongue were included in this study. All patients were treated with preoperative concurrent chemoradiotherapy followed by conventional surgical resection. Semiserial sections of whole surgical specimen of primary lesion were evaluated histopathologically. In patients who achieved 85% and above regression, the extent of residual tumours two-dimensionally and in the deep layers was lesser, and the rate of tumour cell survival was lower, than in other patients. Furthermore, residual tumours tended to be localized to the superficial layers in the centre. These findings suggest that even in advanced tongue carcinomas it is possible to avoid extended resection and perform a less invasive surgery in which the extent of resection is reduced to preserve morphology and function in patients who achieved 65% and above regression following preoperative chemoradiotherapy.


Subject(s)
Carcinoma, Squamous Cell/surgery , Carcinoma, Squamous Cell/therapy , Neoadjuvant Therapy , Oral Surgical Procedures/methods , Tongue Neoplasms/surgery , Tongue Neoplasms/therapy , Adult , Aged , Aged, 80 and over , Antineoplastic Agents/therapeutic use , Carboplatin/therapeutic use , Carcinoma, Squamous Cell/drug therapy , Carcinoma, Squamous Cell/radiotherapy , Chemotherapy, Adjuvant , Chi-Square Distribution , Cisplatin/therapeutic use , Disease-Free Survival , Female , Humans , Male , Middle Aged , Quality of Life , Radiotherapy Dosage , Radiotherapy, Adjuvant , Remission Induction , Retrospective Studies , Tongue Neoplasms/drug therapy , Tongue Neoplasms/radiotherapy
6.
Biol Pharm Bull ; 24(9): 978-81, 2001 Sep.
Article in English | MEDLINE | ID: mdl-11558580

ABSTRACT

The sialic acid binding lectin from bullfrog Rana catesbeiana oocyte (cSBL) is known to have anti-tumor activity. In order to investigate the relationship between the net charge of cSBL and its anti-tumor effect, cSBL was modified with a water-soluble carbodiimide (EDC) in the presence of three kinds of nucleophiles, taurine, glycine methylester and ethylenediamine. cSBL having four carboxyl groups was partially modified (ca. 2 residues). The anti-tumor activity of modified cSBLs was in the order of ethylenediamine-modified cSBL > glycine methylester-modified cSBL > taurine modified cSBL > or = native cSBL. The results suggested that anti-tumor activity seems to increase with the increase in positive net charge, possibly enhancing the interaction of cSBL with sialoglycoprotein on the surface of tumor cells. The ribonuclease activity of ethylenediamine-modified cSBL decreased with the progress of the reaction, but the number of internalized molecules in the tumor cell increased. Thus, for antitumor activity, a higher incorporation of cSBL with reasonable RNase activity seems to be more important than total RNase activity.


Subject(s)
Antineoplastic Agents/pharmacology , Glycine/analogs & derivatives , Lectins/pharmacology , Oocytes/metabolism , Amino Acid Sequence , Animals , Antineoplastic Agents/chemistry , Antineoplastic Agents/therapeutic use , Cell Division/drug effects , Circular Dichroism , Ethylenediamines/chemistry , Female , Glycine/chemistry , Indicators and Reagents , Lectins/chemistry , Lectins/therapeutic use , Leukemia P388/drug therapy , Leukemia P388/metabolism , Mice , Molecular Sequence Data , Proteins/chemistry , Rana catesbeiana , Ribonucleases/metabolism , Sialic Acid Binding Immunoglobulin-like Lectins , Structure-Activity Relationship
7.
Biol Pharm Bull ; 24(7): 760-6, 2001 Jul.
Article in English | MEDLINE | ID: mdl-11456114

ABSTRACT

A base-nonspecific and acid ribonuclease (RNase Os) belonging to the RNase T2 family was purified from rice bran to a homogeneous state by SDS-PAGE. The primary structure of RNase Os was determined by protein chemistry and molecular cloning. The RNase Os was a simple protein and consisted of 205 amino acid residues. Its molecular weight was 22578 and its amino acid sequence showed that it was most similar to barley RNase among the known RNase T2 family enzymes having 157 amino acid residues identical with barley RNase. However, its N-terminus was blocked by a gamma-pyroglutamyl residue. The optimal pH of RNase Os was around 5.5. The base preference at the B1 and B2 site of RNase Os was estimated from the rates of hydrolysis of 16 dinucleoside phosphates, to be guanine as the case of RNase LE from tomato. RNase Os was successfully expressed from yeast cells using the E. coli yeast expression vector pYE-RNAP.


Subject(s)
Oryza/enzymology , Ribonucleases/analysis , Amino Acid Sequence , Base Sequence , DNA, Plant/analysis , DNA, Plant/genetics , Electrophoresis, Polyacrylamide Gel , Hydrolysis , Indicators and Reagents , Molecular Sequence Data , Peptide Hydrolases , Plant Proteins/metabolism
8.
Proc Natl Acad Sci U S A ; 98(15): 8674-9, 2001 Jul 17.
Article in English | MEDLINE | ID: mdl-11447259

ABSTRACT

Pituitary cell types arise in a temporally and spatially specific fashion, in response to combinatorial actions of transcription factors induced by transient signaling gradients. The critical transcriptional determinants of the two pituitary cell types that express the pro-opiomelanocortin (POMC) gene, the anterior lobe corticotropes, producing adrenocorticotropin, and the intermediate lobe melanotropes, producing melanocyte-stimulating hormone (MSH alpha), have remained unknown. Here, we report that a member of the T-box gene family, Tbx19, which is expressed only in the rostral ventral diencephalon and pituitary gland, commencing on e11.5, marks pituitary cells that will subsequently express the POMC gene and is capable of altering progression of ventral cell types and inducing adrenocorticotropin in rostral tip cells. It is suggested that Tbx19, depending on the presence of synergizing transcription factors, can activate POMC gene expression and repress the alpha glycoprotein subunit and thyroid-stimulating hormone beta promoters.


Subject(s)
Gene Expression Regulation , Homeodomain Proteins , Pro-Opiomelanocortin/genetics , Transcription Factors/metabolism , Amino Acid Sequence , Animals , Base Sequence , Basic Helix-Loop-Helix Transcription Factors , DNA-Binding Proteins/genetics , DNA-Binding Proteins/physiology , HeLa Cells , Helix-Loop-Helix Motifs , Humans , Mice , Mice, Transgenic , Molecular Sequence Data , Pituitary Gland/embryology , Promoter Regions, Genetic , T-Box Domain Proteins , Trans-Activators/genetics , Trans-Activators/physiology , Transcription Factors/genetics , Transcription Factors/physiology
9.
Nihon Igaku Hoshasen Gakkai Zasshi ; 61(5): 215-21, 2001 Apr.
Article in Japanese | MEDLINE | ID: mdl-11398345

ABSTRACT

Recent advances in MR hydrography have enabled various clinical applications in the areas of abdominal and pelvic disorders, for example, MR cholangiopancreatography (MRCP), MR urography(MRU), and MR hydrography of the fetus. Although the two-dimensional(2D) single-slice method provides excellent information as to the global relationship between lesions and various anatomical structures, small lesions or detailed anatomical characteristics may not be visualized owing to the partial volume effect. Source images of the 2D multislice method are most suitable for the detection of small lesions and detailed evaluation of anatomical structures as "tomographic imaging", while the three-dimensional(3D) method is useful in obtaining data sets for 3D imaging. MR hydrography is a promising method for the noninvasive evaluation of various abdominal disorders, and it has the potential to play new roles in various anatomical regions. However, knowledge of the proper indications is essential for successful clinical application.


Subject(s)
Abdomen/pathology , Magnetic Resonance Imaging/methods , Female , Fetal Diseases/diagnosis , Fetus/pathology , Humans , Pregnancy , Urography
10.
Nature ; 414(6866): 901-5, 2001.
Article in English | MEDLINE | ID: mdl-11780061

ABSTRACT

The genetic and molecular basis of morphological evolution is poorly understood, particularly in vertebrates. Genetic studies of the differences between naturally occurring vertebrate species have been limited by the expense and difficulty of raising large numbers of animals and the absence of molecular linkage maps for all but a handful of laboratory and domesticated animals. We have developed a genome-wide linkage map for the three-spined stickleback (Gasterosteus aculeatus), an extensively studied teleost fish that has undergone rapid divergence and speciation since the melting of glaciers 15,000 years ago. Here we use this map to analyse the genetic basis of recently evolved changes in skeletal armour and feeding morphologies seen in the benthic and limnetic stickleback species from Priest Lake, British Columbia. Substantial alterations in spine length, armour plate number, and gill raker number are controlled by genetic factors that map to independent chromosome regions. Further study of these regions will help to define the number and type of genetic changes that underlie morphological diversification during vertebrate evolution.


Subject(s)
Smegmamorpha/genetics , Animals , Chromosome Mapping , Crosses, Genetic , Evolution, Molecular , Feeding Behavior , Female , Gene Library , Genetic Linkage , Genetic Variation , Male , Molecular Sequence Data
11.
Biol Pharm Bull ; 24(12): 1356-61, 2001 Dec.
Article in English | MEDLINE | ID: mdl-11767101

ABSTRACT

A trypsin inhibitor that is highly homologous with bovine pancreatic trypsin inhibitor (BPTI) was co-purified along with RNase from Spirometra (Spirometra erinaceieuropaei). The amino acid sequence of this inhibitor (SETI) and the nucleotide sequence of the cDNA encoding this protein were determined by protein chemistry and gene technology. SETI contains 68 amino acid residues and has a molecular mass of 7,798 Da. SETI has 31 amino acid residues that are identical with BPTI's sequence, including 6 half-cystine and 5 aromatic amino acid residues. The active site Lys residue in BPTI is replaced by an Arg residue in SETI. SETI is an effective inhibitor of trypsin and moderately inhibits a-chymotrypsin, but less inhibits elastase or subtilisin. SETI was expressed by E. coli containing a PelB vector carrying the SETI encoding cDNA; an expression yield of 0.68 mg/l was obtained. The phylogenetic relationship of SETI and the other BPTI-like trypsin inhibitors was analyzed using most likelihood inference methods.


Subject(s)
Helminth Proteins/isolation & purification , Spirometra/metabolism , Trypsin Inhibitors/isolation & purification , Amino Acid Sequence , Animals , Aprotinin/chemistry , Base Sequence , Cattle , DNA, Complementary/analysis , DNA, Complementary/biosynthesis , DNA, Complementary/isolation & purification , Escherichia coli/chemistry , Escherichia coli/metabolism , Helminth Proteins/chemistry , Helminth Proteins/genetics , Molecular Sequence Data , Sequence Homology, Amino Acid , Spirometra/chemistry , Spirometra/isolation & purification , Trypsin Inhibitors/chemistry , Trypsin Inhibitors/genetics
12.
Biol Pharm Bull ; 24(12): 1366-9, 2001 Dec.
Article in English | MEDLINE | ID: mdl-11767103

ABSTRACT

The anti-tumor activity of sialic acid binding lectin from Rana catesbeiana (cSBL) was increased by chemical modification with a water-soluble carbodiimide (EDC) in the presence of nucleophiles such as ethylenediamine and glycine methylester. Investigations on ribonuclease (RNase) activities of the modified cSBLs were conducted to elucidate the fundamental mechanisms underlying enhancement of the anti-tumor activity conferred by these modifications. The following three characteristics were observed with modification. (i) RNase activity of the modified cSBL was enhanced towards double stranded RNA and RNA-oligo dA hybrids. The activity increase was observed even under physiologic ionic strength conditions; (ii) RNase activity of the modified cSBL towards single stranded RNA and poly U decreased, while the activity towards poly C was unaffected; (iii) the base preference of the B2 base recognition site of modified cSBL decreased for guanine. On the contrary, the preference for cytosine and adenine increased. This result may explain why the RNase activity towards poly C was not affected by EDC-modification as mentioned above.


Subject(s)
Amphibian Proteins , Ethyldimethylaminopropyl Carbodiimide/analogs & derivatives , Ethyldimethylaminopropyl Carbodiimide/pharmacology , Lectins/metabolism , Purine Nucleosides/metabolism , Pyrimidine Nucleosides/metabolism , Rana catesbeiana , Ribonucleases/metabolism , Animals , Dinucleoside Phosphates/metabolism , Ethyldimethylaminopropyl Carbodiimide/metabolism , Hydrolysis , Poly U/metabolism , Purine Nucleosides/pharmacology , Pyrimidine Nucleosides/pharmacology , RNA, Double-Stranded/metabolism , Solubility , Uridine/metabolism
13.
Biosci Biotechnol Biochem ; 64(10): 2068-74, 2000 Oct.
Article in English | MEDLINE | ID: mdl-11129577

ABSTRACT

To investigate the role of Phe101, a component of a base recognition site (B2 site) of a base-nonspecific RNase Rh from Rhizopus niveus, we prepared several enzymes mutated at this position, F101W, F101L, F101I, F101A, F101Q, F101R, and F101K, and their enzymatic activities towards RNA, 16 dinucleoside phosphates, and 2', 3'-cyclic pyrimidine nucleotides were measured. Enzymatic activity toward RNA of F101W, F101L, and F101I were about 7, 20, and 3.8% of the native enzyme, respectively, and those of the other mutants were less than 1% of the RNase Rh. Similar results were also obtained with GpG as substrate. Thus, it was concluded that Phe101 is a very important residue as a component of the B2 site of RNase Rh, and its role could be replaced by Leu, then Trp and Ile, though in less effectively. The results suggested that some kind of interaction between B2 base and the side chain of amino acid residue at the 101th position, such as pi/pi or CH/pi interaction is very important for the enzymatic activity of RNase Rh. The mutation of Phe101 markedly affected the enzymatic activity toward dinucleoside phosphates and polymer substrates, but only moderately the rate of hydrolysis of cyclic nucleotides, indicating the presence of secondary effect of the mutation on B1 site.


Subject(s)
Endoribonucleases/metabolism , Phenylalanine/metabolism , Rhizopus/enzymology , Base Sequence , DNA Primers , Endoribonucleases/chemistry , Endoribonucleases/genetics , Hydrolysis , Kinetics , Mutagenesis, Site-Directed , Phenylalanine/genetics , Protein Conformation , Substrate Specificity
14.
Article in English | MEDLINE | ID: mdl-11027381

ABSTRACT

Extranodal presentation in non-Hodgkin's lymphoma (NHL) is uncommon, and the mandible is very rarely involved. Primary NHL of the mandible, for the most part, has intermediate or high malignancy and has a much greater incidence of local recurrence compared with other sites of involvement. A 48-year-old Japanese man with NHL of the mandible received radiotherapy, followed by high-dose chemotherapy supported with peripheral blood stem cell transplantation (PBSCT). High-dose cyclophosphamide, Adriamycin, and vincristine were used for pretransplant conditioning. He achieved complete remission and has survived in continuous complete remission for more than 72 months to date. Marrow-ablative chemotherapy facilitated by PBSCT is thought to be useful as part of the primary therapy for patients with NHL who have poorer prognoses.


Subject(s)
Lymphoma, B-Cell/therapy , Lymphoma, Large B-Cell, Diffuse/therapy , Mandibular Neoplasms/therapy , Antineoplastic Combined Chemotherapy Protocols/therapeutic use , Combined Modality Therapy , Cranial Irradiation , Hematopoietic Stem Cell Transplantation , Humans , Male , Middle Aged , Remission Induction
15.
Biol Pharm Bull ; 23(7): 800-4, 2000 Jul.
Article in English | MEDLINE | ID: mdl-10919355

ABSTRACT

Lentinus edodes (shiitake) produces three base non- specific and acid ribonucleases, RNase Le2, RNase Le37 and RNase Le45. The primary structures of the former two RNases, having molecular masses about 24 and 37 kDa, respectively, have been elucidated to be members of the RNase T2 family. The latter two are excreted from mycelia into the medium. In this report, we estimated the primary structure of RNase Le45 using the following experimental evidence. (i) The partial amino acid sequence of RNase Le45 determined that up to about 60% of total protein was identical with that of RNase Le37. (ii) The amino acid composition of RNase Le45 was identical to that of RNase Le37. (iii) The elution profiles on HPLC of lysylendopeptidase and Staphylococcus aureus V8 protease digests of RCM-RNase Le45 (reduced and S-carboxymethylated RNase Le45) were very similar to those of RNase Le37, except for the absence of C-terminus peptide which contained O-glycosylated peptides. However, RNase Le45 contained about 70 residues of mannose and 4 residues of hexosamine. These values were more than twice those of RNase Le37. (iv) RNase Le45 was immunologically indistinguishable from RNase Le37. (v) After treatment with both glycosidase EndoH and alpha-mannosidase, RNases Le37 and Le45 gave complex bands by slab-gel electrophoresis. However, one of the major bands with the highest mobility from RNase Le45 and Le37 showed the molecular mass of 29 kDa in common, which is slightly larger than that of RNase Le2 containing no carbohydrate. These results indicated that RNase Le45 is an enzyme which is a heavily glycosylated species of RNase Le37.


Subject(s)
Ribonucleases/chemistry , Shiitake Mushrooms/enzymology , Amino Acid Sequence , Amino Acids/analysis , Culture Media/analysis , Electrophoresis, Polyacrylamide Gel , Molecular Sequence Data , Molecular Weight , Ribonucleases/metabolism , Sequence Analysis, Protein , Sequence Homology, Amino Acid
16.
Biosci Biotechnol Biochem ; 64(5): 948-57, 2000 May.
Article in English | MEDLINE | ID: mdl-10879463

ABSTRACT

The fruit bodies of Lentinus edodes produce two acid nucleases, nucleases Le1 and Le3, both of which are thought to be candidates for the enzymes producing a tasty substance, 5'-GMP. To obtain the basic information on the mechanism of production of 5'-GMP, and structure-function relationship of these nucleases, the primary structure of nuclease Le1 was estimated by both protein chemistry and gene cloning. Nuclease Le1 is a glycoprotein and consists of 290 amino acid residues, and about 2 and 6 residues of hexosamine and neutral sugar, respectively. The nucleotide sequence of cDNA and genomic DNA encoding nuclease Le1 indicated the presence of 20 amino acid residues of a signal peptide. Nuclease Le1 has 115 and 108 residues of identical amino acid residues with nucleases P1 and S, respectively. The amino acid residues concerning the coordination with Zn2+ in nuclease P1 are all conserved in nuclease Le1. Nuclease Le1 contains 8 half-cystine residues and 4 of them are located at the same places as those of nucleases P1 and S.


Subject(s)
Amino Acid Sequence , Base Sequence , Nucleotidases/chemistry , Ribonucleases/genetics , Ribonucleases/isolation & purification , Shiitake Mushrooms/enzymology , DNA, Complementary/analysis , Molecular Sequence Data , Protein Conformation , Reverse Transcriptase Polymerase Chain Reaction , Ribonucleases/metabolism , Sequence Alignment , Sequence Analysis, DNA , Sequence Analysis, Protein , Shiitake Mushrooms/genetics
17.
J Mol Biol ; 298(5): 859-73, 2000 May 19.
Article in English | MEDLINE | ID: mdl-10801354

ABSTRACT

Ribonuclease LE (RNase LE) from cultured tomato (Lycopersicon esculentum) cells is a member of the RNase T(2) family showing broad base specificity. The crystal structure of RNase LE has been determined at 1.65 A resolution. The structure consists of seven alpha-helices and seven beta-strands, belonging to an alpha+beta type structure. Comparison of the structure of RNase LE with that of RNase Rh, a microbial RNase belonging to the RNase T(2) family, reveals that while the overall folding topologies are similar to each other, major insertions and deletions are found at the N-terminal regions. The structural comparison, an amino acid sequence alignment of the RNase T(2) enzymes, and comparison of the disulfide-bonding pattern of these enzymes show that the structure of RNase LE shown here is the basic framework of the animal/plant subfamily of RNase T(2) enzymes (including a self-incompatibility protein called S-RNase), and the structure of RNase Rh is that of the fungal subfamily of RNase T(2) enzymes (including RNase T(2)). Subsequently, we superposed the active-site of the RNase LE with that of RNase Rh and found that (1) His39, Trp42, His92, Glu93, Lys96, and His97 of RNase LE coincided exactly with His46, Trp49, His104, Glu105, Lys108, and His109, respectively, of RNase Rh, and (2) two conserved water molecules were found at the putative P(1) sites of both enzymes. These facts suggest that plant RNase LE has a very similar hydrolysis mechanism to that of fungal RNase Rh, and almost all the RNase T(2) enzymes widely distributed in various species share a common catalytic mechanism. A cluster of hydrophobic residues was found on the active-site face of the RNase LE molecule and two large hydrophobic pockets exist. These hydrophobic pockets appear to be base binding sites mainly by hydrophobic interactions and are responsible for the base non-specificity of RNase LE.


Subject(s)
Endoribonucleases/chemistry , Plant Proteins/chemistry , Solanum lycopersicum/enzymology , Amino Acid Sequence , Animals , Binding Sites , Catalysis , Conserved Sequence , Crystallography, X-Ray , DNA-Binding Proteins/chemistry , DNA-Binding Proteins/classification , DNA-Binding Proteins/metabolism , Disulfides/metabolism , Endoribonucleases/classification , Endoribonucleases/metabolism , Fungal Proteins/chemistry , Fungal Proteins/classification , Fungal Proteins/metabolism , Models, Molecular , Molecular Sequence Data , Plant Proteins/classification , Plant Proteins/metabolism , Protein Structure, Secondary , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Sequence Alignment , Structure-Activity Relationship , Substrate Specificity , Water/metabolism
18.
Biosci Biotechnol Biochem ; 64(1): 44-51, 2000 Jan.
Article in English | MEDLINE | ID: mdl-10705447

ABSTRACT

The mushroom Lentinus edodes produces three base-non-specific and acid ribonucleases, RNases Le2, Le37, and Le45. The latter two are excreted from mycelia into the medium. The primary structure of RNase Le37, which had a molecular mass of 37 kDa, was sequenced. It was a member of the RNase T2 family, as is RNase Le2. RNase Le37 was some 30 amino acid residues longer at the C-terminal end than RNase Le2. The C-terminal region of RNase LE37 was rich in O-glycosylated serine and threonine. In fungal glucoamylases and chitinases, which hydrolyze raw-starch and chitin, respectively, have structures resembling the structure of the C-terminal of RNase Le37.


Subject(s)
Agaricales/enzymology , Ribonucleases/chemistry , Serine/analysis , Threonine/analysis , Amino Acid Sequence , Culture Media , Endoribonucleases/analysis , Glycosylation , Molecular Sequence Data
19.
FEBS Lett ; 468(1): 11-4, 2000 Feb 18.
Article in English | MEDLINE | ID: mdl-10683431

ABSTRACT

The 62 residue peptide, SSR(1-62), whose sequence corresponds to that of ribonuclease (RNase) from Sulfolobus solfataricus, and its related peptides, SSR(1-22) and SSR(10-62), were chemically synthesized and their RNase activity and DNA-binding activity were examined. The RNase activity assay using yeast RNA or tRNA(fMet) as substrate showed that the synthetic peptide SSR(1-62) did not hydrolyze yeast RNA or tRNA(fMet). These data were not consistent with previous reports that both the native peptide isolated from S. solfataricus [Fusi et al. (1993) Eur. J. Biochem. 211, 305-311] and the recombinant peptide expressed in Escherichia coli [Fusi et al. (1995) Gene 154, 99-103] were able to hydrolyze tRNA(fMet). However, the synthetic SSR(1-62) exhibited DNA-binding activity. In the presence of synthetic SSR(1-62), the cleavage of DNA (plasmid pUCRh2-4) by restriction endonuclease (EcoRI) was not observed, suggesting that synthetic SSR(1-62) bound to DNA protected DNA from its enzymatic digestion. Neither SSR(1-22) nor SSR(10-62) prevented DNA from being cleaved by a restriction enzyme. These findings strongly suggest the importance of not only the N-terminal region of SSR(1-62) but also the C-terminal region for DNA-binding. Circular dichroism spectroscopy of synthetic SSR(1-62) indicated a beta-sheet conformation, in contrast with synthetic SSR(1-22), which exhibited an unordered conformation.


Subject(s)
Amino Acids/metabolism , Archaeal Proteins/metabolism , Peptide Fragments/metabolism , Ribonucleases/metabolism , Sulfolobus/enzymology , Amino Acid Sequence , Archaeal Proteins/chemical synthesis , Circular Dichroism , DNA/metabolism , DNA-Binding Proteins/chemical synthesis , DNA-Binding Proteins/metabolism , Electrophoresis, Polyacrylamide Gel , Hydrolysis , Molecular Sequence Data , Peptide Fragments/chemical synthesis , Protein Conformation , RNA/metabolism , RNA, Transfer, Met/metabolism , Ribonucleases/chemical synthesis , Sequence Analysis
20.
Chem Pharm Bull (Tokyo) ; 47(8): 1089-96, 1999 Aug.
Article in English | MEDLINE | ID: mdl-10478464

ABSTRACT

The 2-adamantyloxycarbonyl group was employed for the protection of the epsilon-amino group of Lys and the hydroxyl group of Tyr, and the 2-adamantyl ester was employed for the protection of the beta-carboxyl group of Asp in order to construct eight peptide segments as building blocks for the preparation of peptide fragments related to the sequence of Sulfolobus solifataricus Ribonuclease. The usefulness of the above protecting groups developed in our laboratory was confirmed.


Subject(s)
Adamantane/analogs & derivatives , Peptide Fragments/chemical synthesis , Ribonucleases/chemical synthesis , Sulfolobus/enzymology , Adamantane/chemical synthesis , Adamantane/chemistry , Amino Acid Sequence , Indicators and Reagents , Molecular Sequence Data , Peptide Fragments/chemistry , Ribonucleases/chemistry
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